RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 022545
         (295 letters)



>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
           [TaxId: 274]}
          Length = 224

 Score =  226 bits (578), Expect = 7e-75
 Identities = 109/223 (48%), Positives = 158/223 (70%), Gaps = 1/223 (0%)

Query: 63  KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSL 122
           KR+  +    +  K Y +  A  L+K++++ KF ET E H +L IDP+ +DQ +R TVSL
Sbjct: 1   KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 60

Query: 123 PKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVA 182
           P G GK V+V  +A+GEK  EA+ AGAD VGG+++I++I  G+M+FD ++A+PD+M  V 
Sbjct: 61  PHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 120

Query: 183 S-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 241
           S LG+ILGPRGL+PNPKAGTV  NI + I E K G++E+R DKTG +H P GKA F  + 
Sbjct: 121 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEK 180

Query: 242 LLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 284
           L  N  A ++++EA+KP+GAKG + +S Y+ ++MGPS+R+N  
Sbjct: 181 LADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPH 223


>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
           acidocaldarius [TaxId: 2285]}
          Length = 217

 Score =  149 bits (378), Expect = 5e-45
 Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 18/217 (8%)

Query: 77  EYDLKTAISLLKQMSST---KFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKV 132
           +  L  A+ L           FT++ E       ID K  D +LR  V LPK   K+ +V
Sbjct: 5   KESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRV 64

Query: 133 AVLAQGEKFNEAKNAGADLVGGDDLIEQIKG-------GFMEFDKLIASPDM-MVKVASL 184
            V+   E+   AK A   +V   + +++++G          + +  + + +   +    L
Sbjct: 65  LVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRIL 124

Query: 185 GKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLI 244
           G  LGPRG  P P     T +I + I  FK+  +    D+  +  +  G  D   +DL  
Sbjct: 125 GPALGPRGKFPTPL--PNTADISEYINRFKRSVLVKTKDQPQV-QVFIGTEDMKPEDLAE 181

Query: 245 NFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 281
           N +A + +I   + K       ++ Y+ ++MG ++++
Sbjct: 182 NAIAVLNAI---ENKAKVETNLRNIYVKTTMGKAVKV 215


>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 212

 Score =  143 bits (361), Expect = 2e-42
 Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 14/211 (6%)

Query: 80  LKTAISLLKQMS-STKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQ 137
           L  A+   ++++    FT++ E    L  ID +  + +++  V LP G GK  K+AV+  
Sbjct: 6   LLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGT 65

Query: 138 GEKFNEAKNAGADLVGGDDLIEQIK------GGFMEFDKLIASPDMMVKVAS-LGKILGP 190
           G+   +A+  G  ++  +++ E  K            D  IA  D+M  +   +G ILGP
Sbjct: 66  GDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGP 125

Query: 191 RGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAV 250
           RG MP P       NI   +E  KK  V    DK     +  G    +++ ++ N  A +
Sbjct: 126 RGKMPKPV--PANANIKPLVERLKKTVVINTRDK-PYFQVLVGNEKMTDEQIVDNIEAVL 182

Query: 251 KSIEANKPKGAKGVYWKSAYICSSMGPSIRL 281
             +     KG    + K AY+  +MGP++++
Sbjct: 183 NVVAKKYEKGLY--HIKDAYVKLTMGPAVKV 211


>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
           [TaxId: 2026]}
          Length = 279

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 25/185 (13%), Positives = 48/185 (25%), Gaps = 16/185 (8%)

Query: 108 DPKYNDQQ-----LRATVSLPKGTGKSVKVAVLAQG-----EKFNEAKNAGADLVGGD-- 155
           DP ++ +Q     ++A  +     G   K+A++  G              G D V  D  
Sbjct: 5   DPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDST 64

Query: 156 --DLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEF 213
             +              +  +   +   A    IL  R L  +       T +   I   
Sbjct: 65  PQNGNGHGTHCAGIAAAVTNNSTGIAGTAPKASILAVRVLDNS--GSGTWTAVANGITYA 122

Query: 214 KKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICS 273
                +  +   G      G             +    +  A         Y+ +A   +
Sbjct: 123 ADQGAKVISLSLGGTVGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVA 182

Query: 274 SMGPS 278
           S   +
Sbjct: 183 STDQN 187


>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 339

 Score = 29.8 bits (65), Expect = 0.44
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 13/54 (24%)

Query: 97  ETAEAHFRLNIDPKYNDQ-------QLRATVSLPKG-----TGKSVKVAVLAQG 138
           + AE    +N DP +  Q          + +++        TG  V  A++  G
Sbjct: 4   KEAEDKLSIN-DPLFERQWHLVNPSFPGSDINVLDLWYNNITGAGVVAAIVDDG 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0380    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,067,184
Number of extensions: 49089
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 8
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.7 bits)