BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022546
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/291 (65%), Positives = 220/291 (75%), Gaps = 1/291 (0%)
Query: 1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
MK++PLVS L LYD+ N PGV AD+SH+++ A V G+ G++QL AL G D++I+PAGVP
Sbjct: 64 MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 123
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
RKPGMTRDDLF INAGIVK+LC IA CP A+VN+ISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 124 RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDP 183
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
K+L GVT LDVVRA TF A +GGHAGVTILPL SQ P S + + EE
Sbjct: 184 KRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPS-SFTQEE 242
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
I LT R Q+GGTEVVEAKAG GSATLSMAYA FADACL GL G ++EC FV S V
Sbjct: 243 ISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQV 302
Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
TELPFFASKVRLG+NG +EV LGPL++YE+ GLE K EL SIEKG+ F
Sbjct: 303 TELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/291 (65%), Positives = 220/291 (75%), Gaps = 1/291 (0%)
Query: 1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
MK++PLVS L LYD+ N PGV AD+SH+++ A V G+ G++QL AL G D++I+PAGVP
Sbjct: 28 MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
RKPGMTRDDLF INAGIVK+LC IA CP A+VN+ISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 88 RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDP 147
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
K+L GVT LDVVRA TF A +GGHAGVTILPL SQ P S + + EE
Sbjct: 148 KRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPS-SFTQEE 206
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
I LT R Q+GGTEVVEAKAG GSATLSMAYA FADACL GL G ++EC FV S V
Sbjct: 207 ISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQV 266
Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
TELPFFASKVRLG+NG +EV LGPL++YE+ GLE K EL SIEKG+ F
Sbjct: 267 TELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 317
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 323 bits (827), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 165/291 (56%), Positives = 209/291 (71%), Gaps = 1/291 (0%)
Query: 1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+K PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL L+G DVV+IPAGVP
Sbjct: 48 LKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVP 107
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
RKPGMTRDDLFN NA IV +L A A +CP A++ +I+NPVNST+PI AEVFKK G Y+
Sbjct: 108 RKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNP 167
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
K+FGVTTLD+VRA TF A IGGHAG TI+PL SQ TPK + ++
Sbjct: 168 NKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKV-DFPQDQ 226
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
+ ALT R Q+ GTEVV+AKAG GSATLSMAYAGA F + + +NG +VEC+FV+S
Sbjct: 227 LTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 286
Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
TE +F++ + LGK G ++ LG+G +S +E++ + PELKASI+KG F
Sbjct: 287 TECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDF 337
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 322 bits (826), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 164/291 (56%), Positives = 209/291 (71%), Gaps = 1/291 (0%)
Query: 1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+K PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL L+G DVV+IPAGVP
Sbjct: 20 LKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
RKPGMTRDDLFN NA IV +L A A +CP A++ +ISNPVNST+PI AEVFKK G Y+
Sbjct: 80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNP 139
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
K+FGVTTLD+VRA F A IGGHAG TI+PL SQ TPK + ++
Sbjct: 140 NKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKV-DFPQDQ 198
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
+ LT R Q+ GTEVV+AKAG GSATLSMAYAGA F + + +NG +VEC+FV+S
Sbjct: 199 LSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 258
Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
T+ P+F++ + LGK G ++ LG+G +S +E++ + PELKASI+KG +F
Sbjct: 259 TDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEF 309
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 281 bits (718), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/288 (54%), Positives = 194/288 (67%), Gaps = 5/288 (1%)
Query: 5 PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
P S L+LYDIA TPGVAAD+SHI + ++GYAGE+ ALEG+DVV+I AGV RKP
Sbjct: 28 PAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGEDPT-PALEGADVVLISAGVARKP 86
Query: 64 GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
G R DLFN+NAGIVKSL IA CP+A + +I+NPVN+TVPIAAEV KKAG YD++KL
Sbjct: 87 GXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNPVNTTVPIAAEVLKKAGVYDKRKL 146
Query: 124 FGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
FGVTTLDV+R++TF A IGGH+GVTILPL SQ + SDEEI A
Sbjct: 147 FGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGVTILPLLSQV--EGVEFSDEEIAA 204
Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
LTKR Q+ GTEVVEAKAG GSATLS A F A + L G +++E +V+ +
Sbjct: 205 LTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALVKALQG-EEVIEYAYVEGNGEHA 263
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
FFA V+LGK G +E+L G LSD+EK L+ L + I+ G+ F
Sbjct: 264 SFFAQPVKLGKEGVEEILPYGELSDFEKAALDGXLETLNSDIQIGVDF 311
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 150/291 (51%), Positives = 191/291 (65%), Gaps = 4/291 (1%)
Query: 5 PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
P S LSLYDIA TPGVA D+SHI + +++G++GE+ ALEG+DVV+I AGV RKP
Sbjct: 25 PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVRRKP 83
Query: 64 GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
GM R DLFN+NAGIVK+L +A CP A + +I+NPVN+TV IAAEV KKAG YD+ KL
Sbjct: 84 GMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKL 143
Query: 124 FGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
FGVTTLD++R+ TF A IGGH+GVTILPL SQ S +++E+
Sbjct: 144 FGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS--FTEQEVAD 201
Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
LTKR Q+ GTEVVEAKAG GSATLSM A A F + + L G +VEC +V+
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA 261
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
FF+ + LGKNG +E +G LS +E+ LE + LK I G +F N+
Sbjct: 262 RFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 312
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 150/291 (51%), Positives = 191/291 (65%), Gaps = 4/291 (1%)
Query: 5 PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
P S LSLYDIA TPGVA D+SHI + +++G++GE+ ALEG+DVV+I AGV RKP
Sbjct: 25 PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKP 83
Query: 64 GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
GM R DLFN+NAGIVK+L +A CP A + +I+NPVN+TV IAAEV KKAG YD+ KL
Sbjct: 84 GMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKL 143
Query: 124 FGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
FGVTTLD++R+ TF A IGGH+GVTILPL SQ S +++E+
Sbjct: 144 FGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS--FTEQEVAD 201
Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
LTKR Q+ GTEVVEAKAG GSATLSM A A F + + L G +VEC +V+
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA 261
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
FF+ + LGKNG +E +G LS +E+ LE + LK I G +F N+
Sbjct: 262 RFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/291 (51%), Positives = 190/291 (65%), Gaps = 4/291 (1%)
Query: 5 PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
P S LSLYDIA TPGVA D+SHI + +++G++GE+ ALEG+DVV+I AGV RKP
Sbjct: 25 PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKP 83
Query: 64 GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
GM R DLFN+NAGIVK+L +A CP A + +I+NPVN+TV IAAEV KKAG YD+ KL
Sbjct: 84 GMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKL 143
Query: 124 FGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
FGVTTLD++ + TF A IGGH+GVTILPL SQ S +++E+
Sbjct: 144 FGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS--FTEQEVAD 201
Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
LTKR Q+ GTEVVEAKAG GSATLSM A A F + + L G +VEC +V+
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA 261
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
FF+ + LGKNG +E +G LS +E+ LE + LK I G +F N+
Sbjct: 262 RFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 312
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 11/230 (4%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
SDVV+I AG+ RKPGM+RDDL N+ I+KS+ IA + P+A++ +++NPV++ +
Sbjct: 79 SDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA---MTY 135
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPL---- 165
VFK+AG E+ + LD R +TF A + +GGH G ++PL
Sbjct: 136 SVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYS 194
Query: 166 FSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN 225
++ P + E ++A+ +RT+ GG E+V G GSA + A + +A L
Sbjct: 195 YAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAYYAPAASLVEMTEAILKDQR 253
Query: 226 GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
V + + ++L + V LG NG ++++ L L+D EK+ L+
Sbjct: 254 RVLPAIAYLEGEYGYSDL-YLGVPVILGGNGIEKIIELELLAD-EKEALD 301
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 120/257 (46%), Gaps = 30/257 (11%)
Query: 45 KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNST 104
K LE SDVVI+ AGVPRKPG +RDDL IN + +++ I + CP+A V I+NP++
Sbjct: 69 KDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITNPLDIX 128
Query: 105 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILP 164
V + K +G D K + LD R +TF A + GGH G T +P
Sbjct: 129 V---NXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGH-GDTXVP 184
Query: 165 LFS---------QATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAV 215
L + K L E + A+ RT+ GG E+V A GSA + A AG
Sbjct: 185 LTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAYYAPAAAGIQ 243
Query: 216 FADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
A+ +F++ LP A+KV+ G G DE L +G ++ G+
Sbjct: 244 XAE---------------SFLKDKKXILP-CAAKVKAGXYGLDEDLFVGVPTEISANGVR 287
Query: 276 SLKPELKASIEKGIQFA 292
++ E+ + +Q +
Sbjct: 288 PIEVEISDKEREQLQVS 304
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 140/287 (48%), Gaps = 37/287 (12%)
Query: 20 GVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINA 75
G A D++H I SPA++ G E L + SDVVII AGVPRKP MTR DL +NA
Sbjct: 53 GKALDLNHCMALIGSPAKIFGENNYEYL----QNSDVVIITAGVPRKPNMTRSDLLTVNA 108
Query: 76 GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVT-TLDVVRA 134
IV S+ + YCP+A V I+NP+++ V FK+ K+ G++ LD R
Sbjct: 109 KIVGSVAENVGKYCPNAFVICITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSARF 164
Query: 135 KTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSD---------EEIKALT 185
+ + +GGH G ++PL S T LSD +I +
Sbjct: 165 RCNLSRALGVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEII 223
Query: 186 KRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFV--QSSVTEL 243
K+T GG E+VE GSA + A + A A L V +V T++ Q +V L
Sbjct: 224 KKTAFGGGEIVEL-LKTGSAFYAPAASAVAMAQAYLKDSKSV--LVCSTYLTGQYNVNNL 280
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEK-------QGLESLKPELKA 283
F V +GKNG ++V+ + LSD EK + +++L +LK+
Sbjct: 281 -FVGVPVVIGKNGIEDVV-IVNLSDDEKSLFSKSVESIQNLVQDLKS 325
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 10/215 (4%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
SD+V+I AG+PRKPGMTR+DL ++NAGIV+ + I + + ++ ++SNP++ +A
Sbjct: 70 SDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPLDIMTHVA- 128
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
++K+G E+ + LD R ++F A + +GGH G ++P+
Sbjct: 129 --WQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGH-GDAMVPVVKYT 185
Query: 170 T----PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN 225
T P ++ +S E I L +RT+ GG E+V +GSA S A + ++ ++
Sbjct: 186 TVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYSPATSVVEMVESIVLDRK 244
Query: 226 GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEV 260
V Q + + F V+LGKNG + +
Sbjct: 245 RVLTCAVSLDGQYGI-DGTFVGVPVKLGKNGVEHI 278
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 30/225 (13%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
SD+VII AG+PRKPGMTR+DL NAGIVK + I + + ++ ++SNP++ +A
Sbjct: 70 SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA- 128
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
+ ++G E+ + LD R ++F A + +GGH G ++P+
Sbjct: 129 --WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYT 185
Query: 170 T----PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA------ 219
T P S+ L E I L +RT++GG E+VE +GSA + A + ++
Sbjct: 186 TVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDRK 244
Query: 220 ----CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEV 260
C +GL G I + F V+LG+NG +++
Sbjct: 245 RVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQI 278
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 30/225 (13%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
SD+VII AG+PRKPGMTR+DL NAGIVK + I + + ++ ++SNP++ +A
Sbjct: 70 SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA- 128
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
+ ++G E+ + LD R ++F A + +GGH G ++P+
Sbjct: 129 --WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYT 185
Query: 170 T----PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA------ 219
T P S+ L E I L +RT++GG E+VE +GSA + A + ++
Sbjct: 186 TVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDRK 244
Query: 220 ----CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEV 260
C +GL G Q + + F V+LG+NG +++
Sbjct: 245 RVLPCAVGLEG----------QYGIDK-TFVGVPVKLGRNGVEQI 278
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 9/240 (3%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
SDV+++ +G PRKPGM+R+DL +NA I ++ + A P+A++ M++NP+++ +AA
Sbjct: 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAA 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTI-LPLFSQ 168
EV +G E+ + LD R +TF A + +GGH + LP FS
Sbjct: 131 EV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFST 187
Query: 169 AT--PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226
+ P S ++ + + + +RT+ GG E+V GSA + A A A +A L
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 227 VPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
V + Q + ++ +F V LG G +++L L PL++ E L + ++A+++
Sbjct: 247 VMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLD 304
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 9/240 (3%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
SDV+++ +G PRKPGM+R+DL +NA I ++ + A P+A++ M++NP+++ +AA
Sbjct: 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAA 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTI-LPLFSQ 168
EV +G E+ + LD R +TF A + +GGH + LP FS
Sbjct: 131 EV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFST 187
Query: 169 AT--PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226
+ P S ++ + + + +RT+ GG E+V GSA + A A A +A L
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 227 VPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
V + Q + ++ +F V LG G +++L L PL++ E L + ++A+++
Sbjct: 247 VMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLD 304
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 9/240 (3%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
SDV+++ +G PRKPGM+R+DL +NA I ++ + A P+A++ M++NP+++ +AA
Sbjct: 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAA 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTI-LPLFSQ 168
EV +G E+ + LD R +TF A + +GGH + LP FS
Sbjct: 131 EV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFST 187
Query: 169 AT--PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226
+ P S ++ + + + +RT+ GG E+V GSA + A A A +A L
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 227 VPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
V + Q + ++ +F V LG G +++L L PL++ E L + ++A+++
Sbjct: 247 VMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLD 304
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 9/240 (3%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
SDV+++ +G PRKPGM+R+DL +NA I ++ + A P+A++ M++NP+++ +AA
Sbjct: 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAA 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTI-LPLFS- 167
EV +G E+ + LD R +TF A + +GGH + LP FS
Sbjct: 131 EV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFSC 187
Query: 168 -QATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226
P S ++ + + + +RT+ GG E+V GSA + A A A +A L
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 227 VPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
V + Q + ++ +F V LG G +++L L PL++ E L + ++A+++
Sbjct: 247 VMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLD 304
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 15/161 (9%)
Query: 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTV 105
A+EG+DVVI+ AGVPRKPGM+RDDL IN +++ + I Y P A V I+NP+++ V
Sbjct: 72 AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMV 131
Query: 106 PIAAEVFKKAGTYDEKKLFGVT-TLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILP 164
+K K+ G+ LD R + F + + +GGH G +++P
Sbjct: 132 ----WALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGH-GDSMVP 186
Query: 165 LFSQAT---------PKSNNLSDEEIKALTKRTQDGGTEVV 196
L +T K S +++ + +RT+DGG E+V
Sbjct: 187 LARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIV 227
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 105/238 (44%), Gaps = 46/238 (19%)
Query: 47 LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
L+GSDVVI+ AGVP+KPG TR L NA ++K + ++ Y P ++V +++NPV+
Sbjct: 65 LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 107 IAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPL 165
+ F K D +K+FG T LD R +T A IG H G + +P+
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-GDSEVPV 179
Query: 166 FSQAT----PKSN------NLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAV 215
+S A P N + ++ ++T+ E++E KG+ ++A A
Sbjct: 180 WSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIER---KGATHYAIALA--- 233
Query: 216 FADACLMGLNGVPDIVECTFV-QSSVTELPFFASK------------VRLGKNGADEV 260
V DIVE F + V L + V LGK+G + +
Sbjct: 234 -----------VADIVESIFFDEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERI 280
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 131/298 (43%), Gaps = 49/298 (16%)
Query: 15 IANTPGV----AADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL 70
IA TPG A D++H + V+ + + GSD+V++ AG+ RKPGMTR+ L
Sbjct: 29 IARTPGKPQGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIGRKPGMTREQL 88
Query: 71 FNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLD 130
NA + L I Y A+V + +NPV++ + ++KK G E+ + LD
Sbjct: 89 LEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYV---MYKKTGFPRERVIGFSGILD 145
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQAT----PKSNNLSDEEIKALTK 186
R + + K +G H G + P+ ++ P + +S EEI+ +
Sbjct: 146 SARMAYYISQKLGVSFKSVNAIVLGMH-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVS 204
Query: 187 RTQDGGTEVVEAK---AGKGSATLSMAYAGAVFADA--------CLMGLNGVPDIVECTF 235
T + G ++ E + + G A + A+ D+ L G G DI
Sbjct: 205 ETVNAGAKITELRGYSSNYGPAAGLVLTVEAIKRDSKRIYPYSLYLQGEYGYNDI----- 259
Query: 236 VQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQG-----------LESLKPELK 282
V E+P +GK+G + ++ L PL++ EK+ +E+L P+L+
Sbjct: 260 ----VAEVPAV-----IGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETLPPQLR 307
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 23/232 (9%)
Query: 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG 64
++ + L+D+ G A D S S A + + GSDVVII AG+ + PG
Sbjct: 32 LADVVLFDVVTGMPEGKALDDSQATSIADTNVSVTSANQYEKIAGSDVVIITAGLTKVPG 91
Query: 65 -----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
+R+DL NA I++ + + YCP A V +++NP++ V + F +A
Sbjct: 92 KSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVIVVTNPLDCMV----KCFHEASGLP 147
Query: 120 EKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATP------- 171
+ + G+ LD R + F A + IG H G +LPL T
Sbjct: 148 KNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGTH-GDHMLPLARYVTVNGFPLRE 206
Query: 172 --KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 221
K +++ ++ + +RT+ G E+V G+GSA + A + A A L
Sbjct: 207 FIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSAYYAPALSAITMAQAFL 257
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 23/232 (9%)
Query: 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG 64
++ + L+D+ G A D S S A + + GSDVVII AG+ + PG
Sbjct: 32 LADVVLFDVVTGMPEGKALDDSQATSIADTNVSVTSANQYEKIAGSDVVIITAGLTKVPG 91
Query: 65 -----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
+R+DL NA I++ + + YCP A V +++NP++ V + F +A
Sbjct: 92 KSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVIVVTNPLDCMV----KCFHEASGLP 147
Query: 120 EKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATP------- 171
+ + G+ LD R + F A + IG H G +LPL T
Sbjct: 148 KNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGTH-GDHMLPLARYVTVNGFPLRE 206
Query: 172 --KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 221
K +++ ++ + +RT+ G E+V G+GSA + A + A A L
Sbjct: 207 FIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSAYYAPALSAITMAQAFL 257
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 10/155 (6%)
Query: 48 EGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPI 107
E SDV II AG+PR PGM+RDDL N IV + P + + +++NP++ +
Sbjct: 68 EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYV 127
Query: 108 AAEVFKKAGTYDEKKLFGVT-TLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLF 166
A E A + ++ G+ LD R ++F A + +GGH G T++PL
Sbjct: 128 AYE----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLP 182
Query: 167 SQAT----PKSNNLSDEEIKALTKRTQDGGTEVVE 197
T P + D I+ + +RT+ G E+V+
Sbjct: 183 RYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVD 217
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 124/292 (42%), Gaps = 35/292 (11%)
Query: 12 LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
L+DI N P G A D SH N A L GSDVVI+ AG + PG
Sbjct: 33 LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKE 92
Query: 65 MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
RDDL +N I+ + I CP+A + +++NPV+ V ++ + + K+
Sbjct: 93 WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 148
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
G+ LD R K + + K +G H +L PL Q +
Sbjct: 149 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 206
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
+SD E++A+ RT + E+V A S ++ A A A++ L L V +
Sbjct: 207 KLISDAELEAIFDRTVNTALEIVNLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTL 263
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
+E + S + F + V LG NG ++V+ L L+ EK + E K
Sbjct: 264 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 310
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 124/292 (42%), Gaps = 35/292 (11%)
Query: 12 LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
L+DI N P G A D SH N A L G+DVVI+ AG + PG
Sbjct: 32 LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKE 91
Query: 65 MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
RDDL +N I+ + I CP+A + +++NPV+ V ++ + + K+
Sbjct: 92 WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 147
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
G+ LD R K + + K +G H +L PL Q +
Sbjct: 148 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 205
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
+SD E++A+ RT + E+V A S ++ A A A++ L L V +
Sbjct: 206 KLISDAELEAIFDRTVNTALEIVNLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTL 262
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
+E + S + F + V LG NG ++V+ L L+ EK + E K
Sbjct: 263 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 309
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 124/292 (42%), Gaps = 35/292 (11%)
Query: 12 LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
L+DI N P G A D SH N A L G+DVVI+ AG + PG
Sbjct: 33 LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKE 92
Query: 65 MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
RDDL +N I+ + I CP+A + +++NPV+ V ++ + + K+
Sbjct: 93 WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 148
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
G+ LD R K + + K +G H +L PL Q +
Sbjct: 149 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 206
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
+SD E++A+ RT + E+V A S ++ A A A++ L L V +
Sbjct: 207 KLISDAELEAIFDRTVNTALEIVNLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTL 263
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
+E + S + F + V LG NG ++V+ L L+ EK + E K
Sbjct: 264 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 310
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 124/292 (42%), Gaps = 35/292 (11%)
Query: 12 LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
L+DI N P G A D SH N A L G+DVVI+ AG + PG
Sbjct: 32 LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKE 91
Query: 65 MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
RDDL +N I+ + I CP+A + +++NPV+ V ++ + + K+
Sbjct: 92 WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 147
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
G+ LD R K + + K +G H +L PL Q +
Sbjct: 148 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 205
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
+SD E++A+ RT + E+V A S ++ A A A++ L L V +
Sbjct: 206 KLISDAELEAIFDRTVNTALEIVNLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTL 262
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
+E + S + F + V LG NG ++V+ L L+ EK + E K
Sbjct: 263 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 309
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 126/285 (44%), Gaps = 30/285 (10%)
Query: 12 LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
++DI N P G A D SH N A L+ +DVVI+ AG + PG
Sbjct: 33 MFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLKDADVVIVTAGFTKAPGKSDKE 92
Query: 65 MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
RDDL +N I+ + I N CP+A + +++NPV+ V ++ + + K+
Sbjct: 93 WNRDDLLPLNNKIMIEIGGHIKNNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIV 148
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
G+ LD R K + + K +G H +L PL Q +
Sbjct: 149 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 206
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC 233
++D+E+ A+ RT + E+V A S ++ A A A++ + L V ++
Sbjct: 207 KKITDQELDAIFDRTINTALEIVNLHA---SPYVAPAAAIIEMAESYIRDLRKV--LICS 261
Query: 234 TFVQSSVTELPFFA-SKVRLGKNGADEVLGLGPLSDYEKQGLESL 277
T ++ FA + + +G NG ++V+ L +D +K+ E++
Sbjct: 262 TLLEGQYGHKDIFAGTPLVIGGNGVEQVIELQLNADEKKKFDEAV 306
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 12 LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
++D+ N P G A D SH N A L+G+DVVI+ AG + PG
Sbjct: 32 MFDVVKNMPQGKALDTSHSNVMAYSNCKVTGSNSYDDLKGADVVIVTAGFTKAPGKSDKE 91
Query: 65 MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
RDDL +N I+ + I N CP+A + +++NPV+ V + +F+ +G + K+
Sbjct: 92 WNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVTNPVDVMVQL---LFEHSGV-PKNKII 147
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
G+ LD R K + + K +G H +L PL Q +
Sbjct: 148 GLGGVLDTSRLKYYISQKLNVCPRDVNALIVGAHGNKMVLLKRYITVGGIPL--QEFINN 205
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKA 200
++DEE++ + RT + E+V A
Sbjct: 206 KKITDEEVEGIFDRTVNTALEIVNLLA 232
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 123/292 (42%), Gaps = 35/292 (11%)
Query: 12 LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
L+DI N P G A D SH N A L GSDVVI+ AG + PG
Sbjct: 33 LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKE 92
Query: 65 MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
R DL +N I+ + I CP+A + +++NPV+ V ++ + + K+
Sbjct: 93 WNRLDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 148
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
G+ LD R K + + K +G H +L PL Q +
Sbjct: 149 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 206
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
+SD E++A+ RT + E+V A S ++ A A A++ L L V +
Sbjct: 207 KLISDAELEAIFDRTVNTALEIVNLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTL 263
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
+E + S + F + V LG NG ++V+ L L+ EK + E K
Sbjct: 264 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 310
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 31/282 (10%)
Query: 17 NTPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71
+T G AAD +H N+ + GY + GSDVV+I AG+PR+PG TR DL
Sbjct: 41 DTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVVVITAGIPRQPGQTRIDLA 93
Query: 72 NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130
NA I++ + +++ + + SNPV+ + +AG +++ G LD
Sbjct: 94 GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 149
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRT 188
R + + + +G H G +P+FS+ + S +E + L
Sbjct: 150 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 208
Query: 189 QDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIV--ECTFVQSSVTELPF 245
Q+ +V+E KG+ A A +A L V P V E F
Sbjct: 209 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 261
Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
F VRLG NG +E++ L DYE+ + +L +K
Sbjct: 262 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 31/282 (10%)
Query: 17 NTPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71
+T G AAD +H N+ + GY + GSDVV+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVVVITAGIPRQPGQTRIDLA 92
Query: 72 NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130
NA I++ + +++ + + SNPV+ + +AG +++ G LD
Sbjct: 93 GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRT 188
R + + + +G H G +P+FS+ + S +E + L
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 207
Query: 189 QDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIV--ECTFVQSSVTELPF 245
Q+ +V+E KG+ A A +A L V P V E F
Sbjct: 208 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 260
Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
F VRLG NG +E++ L DYE+ + +L +K
Sbjct: 261 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 31/282 (10%)
Query: 17 NTPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71
+T G AAD +H N+ + GY + GSDVV+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVVVITAGIPRQPGQTRIDLA 92
Query: 72 NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130
NA I++ + +++ + + SNPV+ + +AG +++ G LD
Sbjct: 93 GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRT 188
R + + + +G H G +P+FS+ + S +E + L
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 207
Query: 189 QDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIV--ECTFVQSSVTELPF 245
Q+ +V+E KG+ A A +A L V P V E F
Sbjct: 208 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGRVLPASVKLEGEFGHEDTA---- 260
Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
F VRLG NG +E++ L DYE+ + +L +K
Sbjct: 261 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 121/292 (41%), Gaps = 35/292 (11%)
Query: 12 LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
L+DI N P G A D SH N A L G+DVVI+ AG + PG
Sbjct: 33 LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKE 92
Query: 65 MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
RDDL +N I+ + I CP+A + +++NPV+ + ++ + + K+
Sbjct: 93 WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKII 148
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
G+ LD R K + + K +G H +L PL Q +
Sbjct: 149 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 206
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
+SD E++A+ RT + E+V A A + A++ L L V +
Sbjct: 207 KLISDAELEAIFDRTVNTALEIVNLHAAPYVAPAAAIIE---MAESYLKDLKKVLICSTL 263
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
+E + S + F + V LG NG ++V+ L L+ EK + E K
Sbjct: 264 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 310
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 7 VSSLSLYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIPA 57
++ + L+DIA G A D++H S ++V G YA + GSDVVII A
Sbjct: 28 LADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYAD-------ISGSDVVIITA 80
Query: 58 GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
+P +P R +L NA I+ S+ + YCP+A V I+NP++ + F+K
Sbjct: 81 SIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVSHFQKVSG 136
Query: 118 YDEKKLFGVT-TLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATP----- 171
K+ G+ LD R +TF A IGGH G ++P S +
Sbjct: 137 LPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPL 195
Query: 172 ----KSNNLSDEEIKALTKRTQDGGTEVVE 197
K ++ E+I + T+ EV +
Sbjct: 196 SSFIKQGLITQEQIDEIVCHTRIAWKEVAD 225
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 25/295 (8%)
Query: 1 MKLDPLVSSLSLYDI--ANTPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVII 55
M L + + + DI T G A D+S+ SP ++ Y+ E K +D+V+I
Sbjct: 27 MVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI--YSAEYSDAK---DADLVVI 81
Query: 56 PAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
AG P++PG TR DL N N I+KS+ I + + + + +NPV+ + +K +
Sbjct: 82 TAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVDI---LTYATWKLS 138
Query: 116 GTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN 175
G + + T+LD R + A +G H G T P++S A
Sbjct: 139 GFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVT 197
Query: 176 LSDEEIKA--------LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV 227
++ E +KA L K +D E KG+ +A A A + A L N V
Sbjct: 198 IA-EWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAV 256
Query: 228 PDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
+ Q + +L + + + +NG +L + PL+D+E++ ++ +LK
Sbjct: 257 LPLSVYMDGQYGINDL-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK 309
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 7 VSSLSLYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIPA 57
++ + L+DIA G A D++H S ++V G YA + GSDVVII A
Sbjct: 28 LADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTNDYAD-------ISGSDVVIITA 80
Query: 58 GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
+P +P R +L NA I+ S+ + YCP+A V I+NP++ V F+K
Sbjct: 81 SIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMV----SHFQKVSG 136
Query: 118 YDEKKLFGVT-TLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATP----- 171
K+ G+ LD R +TF A IGGH G ++P S +
Sbjct: 137 LPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPL 195
Query: 172 ----KSNNLSDEEIKALTKRTQDGGTEVVE 197
K ++ E+I + T+ EV +
Sbjct: 196 SSFIKQGLITQEQIDEIVCHTRIAWKEVAD 225
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 25/295 (8%)
Query: 1 MKLDPLVSSLSLYDI--ANTPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVII 55
M L + + + DI T G A D+S+ SP ++ Y+ E K +D+V+I
Sbjct: 28 MVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI--YSAEYSDAK---DADLVVI 82
Query: 56 PAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
AG P+KPG TR DL N N I+KS+ I + + + + +NPV+ + +K +
Sbjct: 83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI---LTYATWKLS 139
Query: 116 GTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN 175
G + + T+LD R + A +G H G T P++S A
Sbjct: 140 GFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVT 198
Query: 176 LSDEEIKA--------LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV 227
++ E +KA L K +D E KG+ +A A A + A L N V
Sbjct: 199 IA-EWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAV 257
Query: 228 PDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
+ Q + ++ + + + +NG +L + PL+D+E++ ++ +LK
Sbjct: 258 LPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK 310
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 119/282 (42%), Gaps = 31/282 (10%)
Query: 17 NTPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71
+T G AAD +H N+ + GY + GSDVV+I AG+PR+PG TR DL
Sbjct: 41 DTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVVVITAGIPRQPGQTRIDLA 93
Query: 72 NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130
NA I++ + +++ + + SNPV+ + +AG +++ G LD
Sbjct: 94 GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 149
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRT 188
R + + + +G H G +P+FS+ + + S +E + L
Sbjct: 150 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDL 208
Query: 189 QDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIV--ECTFVQSSVTELPF 245
Q+ +V+E KG+ A A +A L V P V E F
Sbjct: 209 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 261
Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
F V LG NG +E++ L DYE+ + +L +K
Sbjct: 262 FGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 119/282 (42%), Gaps = 31/282 (10%)
Query: 17 NTPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71
+T G AAD +H N+ + GY + GSDVV+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVVVITAGIPRQPGQTRIDLA 92
Query: 72 NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130
NA I++ + +++ + + SNPV+ + +AG +++ G LD
Sbjct: 93 GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRT 188
R + + + +G H G +P+FS+ + + S +E + L
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDL 207
Query: 189 QDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIV--ECTFVQSSVTELPF 245
Q+ +V+E KG+ A A +A L V P V E F
Sbjct: 208 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 260
Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
F V LG NG +E++ L DYE+ + +L +K
Sbjct: 261 FGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 23/294 (7%)
Query: 1 MKLDPLVSSLSLYDI--ANTPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVII 55
M L + + + DI T G A D+ SP ++ Y+ E K +D+V+I
Sbjct: 28 MVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKI--YSAEYSDAK---DADLVVI 82
Query: 56 PAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
AG P+KPG TR DL N N I+KS+ I + + + + +NPV+ + +K +
Sbjct: 83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI---LTYATWKLS 139
Query: 116 GTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN 175
G + + T+LD R + A K I G G T P++S A
Sbjct: 140 GFPKNRVVGSGTSLDTARFRQSIA-KMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVT 198
Query: 176 LSDE-----EIK--ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP 228
+++ EIK L K +D + E KG+ +A A A + A L N V
Sbjct: 199 IAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATALARISKAILNDENAVL 258
Query: 229 DIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
+ Q + ++ + + + +NG +L + PL+D+E++ ++ +LK
Sbjct: 259 PLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK 310
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 15/136 (11%)
Query: 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKA----LEGSDVVIIPAGVP 60
V ++L DIA G A D++H + A ++ Y + +G A L+GS+++++ AG+
Sbjct: 25 VDEIALVDIAEDLAVGEAMDLAH--AAAGIDKYP--KIVGGADYSLLKGSEIIVVTAGLA 80
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
RKPGMTR DL + NAGI+K + I P + + +++NP++ I ++K++G
Sbjct: 81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYI---MWKESGK-PR 136
Query: 121 KKLFGV-TTLDVVRAK 135
++FG+ LD R K
Sbjct: 137 NEVFGMGNQLDSQRLK 152
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVE-GYAGEEQLGKALEGSDVVIIPAGVPRKP 63
++ + LYD+ G A D+SH+ S E AL G+D VI+ AG+ + P
Sbjct: 33 LADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVP 92
Query: 64 G-----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
G +R+DL N+ I++ + I YCP + +++NP++ V + E A
Sbjct: 93 GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCE----ASGV 148
Query: 119 DEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS---------Q 168
+ G+ LD R + + A IG H G ++PL Q
Sbjct: 149 PTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQ 207
Query: 169 ATPKSNNLSDEEIKALTKRTQDGGTEVVE 197
K +++++++ + + T+ G E+V
Sbjct: 208 KFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVE-GYAGEEQLGKALEGSDVVIIPAGVPRKP 63
++ + LYD+ G A D+SH+ S E AL G+D VI+ AG+ + P
Sbjct: 31 LADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVP 90
Query: 64 G-----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
G +R+DL N+ I++ + I YCP + +++NP++ V + E A
Sbjct: 91 GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCE----ASGV 146
Query: 119 DEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS---------Q 168
+ G+ LD R + + A IG H G ++PL Q
Sbjct: 147 PTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQ 205
Query: 169 ATPKSNNLSDEEIKALTKRTQDGGTEVVE 197
K +++++++ + + T+ G E+V
Sbjct: 206 KFIKDGVVTEKQLEEIAEHTKVSGGEIVR 234
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVE-GYAGEEQLGKALEGSDVVIIPAGVPRKP 63
++ + LYD+ G A D+SH+ S E AL G+D VI+ AG+ + P
Sbjct: 33 LADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVP 92
Query: 64 G-----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
G +R+DL N+ I++ + I YCP + +++NP++ V + E A
Sbjct: 93 GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMXE----ASGV 148
Query: 119 DEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS---------Q 168
+ G+ LD R + + A IG H G ++PL Q
Sbjct: 149 PTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQ 207
Query: 169 ATPKSNNLSDEEIKALTKRTQDGGTEVVE 197
K +++++++ + + T+ G E+V
Sbjct: 208 KFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 25/215 (11%)
Query: 1 MKLDPLVSSLSLYDI--ANTPGVAADVSH-INSPAQVEGYAGEEQLGKALEGSDVVIIPA 57
M L + L L D+ G A D++H + Q+ YAG+ ++ DV+++ A
Sbjct: 26 MALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYS---DVKDCDVIVVTA 82
Query: 58 GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
G RKPG TR DL N I K + I Y H ++ ++SNPV+ I + +K
Sbjct: 83 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSG 138
Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA------- 169
K+ G T LD +R + + K IG H G + LPL+S
Sbjct: 139 LPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNI 197
Query: 170 -----TPKSNNLSDEEIKALTKRTQDGGTEVVEAK 199
PK N ++E+ K + + + G +++ K
Sbjct: 198 NEYIDDPKC-NFTEEDKKKIAEDVKTAGATIIKNK 231
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 13/172 (7%)
Query: 37 YAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNM 96
Y ++ + ++ SDVVII +GVPRK GM+R DL NA IV IA C + +
Sbjct: 62 YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 97 ISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIG 155
I+NPV+ + A V K ++ ++FG+ T LD +R K A IG
Sbjct: 121 ITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIG 176
Query: 156 GHAGVTILPLFSQAT------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAG 201
H G +++PL S + K + I + + + G +++ K G
Sbjct: 177 EH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGG 227
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 115/286 (40%), Gaps = 19/286 (6%)
Query: 3 LDPLVSSLSLYDIA--NTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
L L L+L D+ G A D+ H + + ++ S VV++ AG
Sbjct: 41 LKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVADKDYS-VTANSKVVVVTAGAR 99
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
++ G +R +L N I K + I Y P+ ++ ++SNPV+ +A +K +G
Sbjct: 100 QQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSGLPRN 156
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGH--------AGVTILPLFSQA-TP 171
+ + T LD R + K IG H +GV + +F Q P
Sbjct: 157 RVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNVAGVFLQGLNP 216
Query: 172 KSNNLSD-EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI 230
D E+ K++ K D EV++ KG + ++ + A + L L +
Sbjct: 217 DMGTDKDKEDWKSVHKMVVDSAYEVIKL---KGYTSWAIGMSAADLCQSILKNLRKCHPV 273
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLES 276
V E F + LG +G +V+ + SD EKQ ++S
Sbjct: 274 STLVKGMHGVNEEVFLSVPCILGNSGLTDVVHMTLKSDEEKQLVKS 319
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
+D+V+I AG +KPG +R +L I+K++ + P+A+ +I+NPV+ IA
Sbjct: 76 ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IAT 131
Query: 110 EVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQ 168
V +K E ++FG T LD R + F + I G G + +PL+
Sbjct: 132 HVAQKLTGLPENQIFGSGTNLDSARLR-FLIAQQTGVNVKNVHAYIAGEHGDSEVPLWES 190
Query: 169 AT------------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF 216
AT P + L ++ + + + ++ +++ GKG+ ++ +G
Sbjct: 191 ATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---GKGATNYAIGMSGVDI 247
Query: 217 ADACLMGLNGV 227
+A L N +
Sbjct: 248 IEAVLHDTNRI 258
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 22/236 (9%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S VV++ AG ++ G +R +L N I K + I Y P+ ++ ++SNPV+ +A
Sbjct: 88 SKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVA- 146
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
+K +G + + T LD R + K +G H G + +P++S
Sbjct: 147 --WKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGV 203
Query: 170 ----------TPKSNNLSD-EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
P+ D E KA+ K DG EV++ K G S + M+ A V +
Sbjct: 204 NVAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVIKLK-GYTSWAIGMSVADLV--E 260
Query: 219 ACLMGLNGVPDIVECTFVQ--SSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQ 272
+ + ++ V + T VQ V + F + LG +G +V+ + ++ EKQ
Sbjct: 261 SIIKNMHKVHPV--STLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHMTLKAEEEKQ 314
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 20/253 (7%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S +VII AG ++ G +R +L N I K + + Y PH + ++SNPV+ +A
Sbjct: 88 SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVA- 146
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS-- 167
+K +G + + LD R + + G+ I G G + +P++S
Sbjct: 147 --WKISGFPKNRVIGSGCNLDSARFR-YLMGERLGVHALSCHGWILGEHGDSSVPVWSGM 203
Query: 168 --------QATPKSNNLSD-EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
P+ +D E+ K + K+ D EV++ KG T ++ + A A+
Sbjct: 204 NVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKL---KGYTTWAIGLSVADLAE 260
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
+ + L V I + E F + LG+NG +V+ + S+ E +S
Sbjct: 261 SIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKS-- 318
Query: 279 PELKASIEKGIQF 291
+ I+K +QF
Sbjct: 319 ADTLWGIQKELQF 331
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 29/281 (10%)
Query: 6 LVSSLSLYDIANTPGVAADVSHIN-----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+V L + D+ +T V DV + SP V AGE +D+V+I AG
Sbjct: 30 IVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVKAGEYS---DCHDADLVVICAGAA 85
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
+KPG TR DL + N I KS+ + + + +NPV+ +A +K +G E
Sbjct: 86 QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDI---LAYATWKFSGLPKE 142
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
+ + T LD R + + IG H G T LP++S A N++ +
Sbjct: 143 RVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA-----NIAGQP 196
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIV----ECTFV 236
+K L ++ +G ++ + A + A MGL + + + +
Sbjct: 197 LKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARITEAIFRNEDAVLT 256
Query: 237 QSSVTELPFFASKVRLG------KNGADEVLGLGPLSDYEK 271
S++ E + V +G +NG V+ + PL+D E+
Sbjct: 257 VSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQ 296
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 29/281 (10%)
Query: 6 LVSSLSLYDIANTPGVAADVSHIN-----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+V L + D+ +T V DV + SP V AGE +D+V+I AG
Sbjct: 30 IVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVKAGEYS---DCHDADLVVICAGAR 85
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
+KPG TR DL + N I KS+ + + + +NPV+ +A +K +G E
Sbjct: 86 QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDI---LAYATWKFSGLPKE 142
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
+ + T LD R + + IG H G T LP++S A N++ +
Sbjct: 143 RVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA-----NIAGQP 196
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIV----ECTFV 236
+K L ++ +G ++ + A + A MGL + + + +
Sbjct: 197 LKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARITEAIFRNEDAVLT 256
Query: 237 QSSVTELPFFASKVRLG------KNGADEVLGLGPLSDYEK 271
S++ E + V +G +NG V+ + PL+D E+
Sbjct: 257 VSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQ 296
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 17/222 (7%)
Query: 47 LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
LEG+ V++ AGV ++PG TR L + NA + + + P A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 107 IAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL--- 163
+A ++ +G + + T LD R + A +G H +L
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 164 -------PLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF 216
PL A + LS E+ + + + ++E GKG+ + A
Sbjct: 182 SAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARL 238
Query: 217 ADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGAD 258
A L GV + T V E+ ++ LG G +
Sbjct: 239 VRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVE 279
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 118/283 (41%), Gaps = 30/283 (10%)
Query: 20 GVAADVSH--INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77
G A D +H + +P V+ + G+ +D+V+I AG +KPG TR DL + N I
Sbjct: 46 GDAMDFNHGKVFAPKPVDIWHGDYD---DCRDADLVVICAGANQKPGETRLDLVDKNIAI 102
Query: 78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTF 137
+S+ ++ L + +NPV+ + +K +G E+ + T LD R + F
Sbjct: 103 FRSIVESVMASGFQGLFLVATNPVD---ILTYATWKFSGLPHERVIGSGTILDTARFR-F 158
Query: 138 YAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA----------TPKSNNLSDEEIKALTKR 187
G+ I G G T LP++SQA + ++++ +
Sbjct: 159 LLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVN 218
Query: 188 TQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI---VECTFVQSSVTELP 244
+D +++E KG+ +A A A L N + + ++ + + V
Sbjct: 219 VRDAAYQIIEK---KGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDV---- 271
Query: 245 FFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
+ + +NG EV+ + L+D EK LK+ + +
Sbjct: 272 YIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLAR 313
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 118/283 (41%), Gaps = 30/283 (10%)
Query: 20 GVAADVSH--INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77
G A D +H + +P V+ + G+ +D+V+I AG +KPG TR DL + N I
Sbjct: 46 GDAMDFNHGKVFAPKPVDIWHGDYD---DCRDADLVVICAGANQKPGETRLDLVDKNIAI 102
Query: 78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTF 137
+S+ ++ L + +NPV+ + +K +G E+ + T LD R + F
Sbjct: 103 FRSIVESVMASGFQGLFLVATNPVD---ILTYATWKFSGLPHERVIGSGTILDTARFR-F 158
Query: 138 YAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA----------TPKSNNLSDEEIKALTKR 187
G+ I G G T LP++SQA + ++++ +
Sbjct: 159 LLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVN 218
Query: 188 TQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI---VECTFVQSSVTELP 244
+D +++E KG+ +A A A L N + + ++ + + V
Sbjct: 219 VRDAAYQIIEK---KGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDV---- 271
Query: 245 FFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
+ + +NG EV+ + L+D EK LK+ + +
Sbjct: 272 YIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLAR 313
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 17/222 (7%)
Query: 47 LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
LEG+ V++ AGV ++PG TR L + NA + + + P A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 107 IAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL--- 163
+A ++ +G + + T LD R + A +G H +L
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 164 -------PLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF 216
PL A + LS E+ + + + ++E GKG+ + A
Sbjct: 182 SAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARL 238
Query: 217 ADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGAD 258
A L GV + T V E+ ++ LG G +
Sbjct: 239 VRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVE 279
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 22/114 (19%)
Query: 1 MKLDPLVSSLSLYD--IANTPGVAADVSHINSPAQVEGYAG-----EEQLGKALEGSDVV 53
M+L P +L LYD GVA ++ H G+ G + +AL + +
Sbjct: 31 MRLTP---NLCLYDPFAVGLEGVAEEIRHC-------GFEGLNLTFTSDIKEALTDAKYI 80
Query: 54 IIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP---HALVNMISNPVNST 104
+ G PRK GMTR+DL NA I L I +YCP H ++ I NP + T
Sbjct: 81 VSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVII--IFNPADIT 132
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 17/222 (7%)
Query: 47 LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
LEG+ V++ AGV ++PG TR L + NA + + + P A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 107 IAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL--- 163
+A ++ +G + + T LD R + A +G H +L
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 164 -------PLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF 216
PL A + LS E+ + + + ++E GKG+ + A
Sbjct: 182 SAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARL 238
Query: 217 ADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGAD 258
A L GV + T V E+ ++ LG G +
Sbjct: 239 VRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVE 279
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 20/253 (7%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S +V+I AG ++ G +R +L N I K + I Y P+ + ++SNPV+ +A
Sbjct: 89 SRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVA- 147
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
+K +G + + LD R + + G+ I G G + +P++S
Sbjct: 148 --WKISGFPKNRVIGSGCNLDSARFR-YLMGERLGVHPLSCHGWILGEHGDSSVPVWSGV 204
Query: 170 TPKSNNLSD-----------EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
+L + E KA+ K D EV++ KG + ++ + A A+
Sbjct: 205 NVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKL---KGYTSWAIGLSVADLAE 261
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
+ + L V I + E F + LG+NG +V+ + L+ E+ L+
Sbjct: 262 SIMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGISDVVKV-TLTPEEEAHLKKSA 320
Query: 279 PELKASIEKGIQF 291
L I+K +QF
Sbjct: 321 DTL-WGIQKELQF 332
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 17/220 (7%)
Query: 47 LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
LEG+ V++ AGV ++PG TR L + NA + + + P A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 107 IAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL--- 163
+A + +G + + T LD R + A +G H +L
Sbjct: 125 VA---YALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 164 -------PLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF 216
PL A + LS E+ + + + ++E GKG+ + A
Sbjct: 182 SAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARL 238
Query: 217 ADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNG 256
A L GV + T + V E+ ++ LG G
Sbjct: 239 VRAILTDEKGVYTVSAFTPEVAGVLEVSLSLPRI-LGAGG 277
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 6/143 (4%)
Query: 60 PRKPGMTRDDLFNINAGIVKSLCTAI-ANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
PR PGM R DL +IN I A+ A P+ V ++ NP N+ I K A
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 119 DEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSD 178
K +T LD RAK A K I G+ T +P F A K + +
Sbjct: 186 PPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNA--KIHGIPV 243
Query: 179 EEIKALTKRTQDGGTEVVEAKAG 201
E+ K +D T +V+ + G
Sbjct: 244 TEVIRDRKWLEDEFTNMVQTRGG 266
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 20/253 (7%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S +VII AG ++ G +R +L N I K + + Y P + ++SNPV+ +A
Sbjct: 88 SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA- 146
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS-- 167
+K +G + + LD R + + +G H G + +P++S
Sbjct: 147 --WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGV 203
Query: 168 --------QATPKSNNLSD-EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
P+ +D E+ K + K+ D EV++ KG + ++ + A A+
Sbjct: 204 NVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL---KGYTSWAIGLSVADLAE 260
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
+ + L V I + E F + LG+NG +V+ + D E + +S
Sbjct: 261 SIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKS-- 318
Query: 279 PELKASIEKGIQF 291
+ I+K +QF
Sbjct: 319 ADTLWGIQKELQF 331
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 20/253 (7%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S +VII AG ++ G +R +L N I K + + Y P + ++SNPV+ +A
Sbjct: 89 SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA- 147
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS-- 167
+K +G + + LD R + + +G H G + +P++S
Sbjct: 148 --WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGV 204
Query: 168 --------QATPKSNNLSD-EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
P+ +D E+ K + K+ D EV++ KG + ++ + A A+
Sbjct: 205 NVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL---KGYTSWAIGLSVADLAE 261
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
+ + L V I + E F + LG+NG +V+ + D E + +S
Sbjct: 262 SIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKS-- 319
Query: 279 PELKASIEKGIQF 291
+ I+K +QF
Sbjct: 320 ADTLWGIQKELQF 332
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 36/260 (13%)
Query: 24 DVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCT 83
D +P ++ Y+GE K +D+V+I AG P+KPG +R DL N N I+ S+
Sbjct: 52 DAQAFTAPKKI--YSGEYSDCK---DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVK 106
Query: 84 AIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXX 143
+ + + + +NPV+ + +K +G E+ + T+LD R + GK
Sbjct: 107 PVVDSGFDGIFLVAANPVDI---LTYATWKFSGFPKERVIGSGTSLDSSRLRVAL-GKQF 162
Query: 144 XXXXXXXXXXIGGHAGVTILPLFSQAT---------PKSNNLSDEEIKALTKRTQDGGTE 194
I G G + +S AT K +SD+++ L ++ +
Sbjct: 163 NVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYD 222
Query: 195 VVEAKA----GKGSATLSMAYA-----GAVFADACLM----GLN----GVPDIVECTFVQ 237
++ K G G+A + ++ A AV M GLN G P I+ T ++
Sbjct: 223 IINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLK 282
Query: 238 SSVTELPFFASKVRLGKNGA 257
+ E P A +++ ++ A
Sbjct: 283 -QIIESPLSADELKKMQDSA 301
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANY-CPHALVNMISNPVNST 104
A +G + I+ PRK GM R DL +NA I K AIA V ++ NP N+
Sbjct: 97 AFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTN 156
Query: 105 VPIAAEVFKKA-GTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL 163
I + K A G + + + +T LD RA + A K I G+ T +
Sbjct: 157 ALI---LLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQV 213
Query: 164 PLFSQA----TP-----KSNNLSDEEIKALTKRTQDGGTEVVEAK 199
P A TP K + L D+ ++ + R G E+++ +
Sbjct: 214 PDTDSAVIGTTPAREAIKDDALDDDFVQVVRGR----GAEIIQLR 254
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 47 LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
L + VVI+ AG +KPG +R DL NA I + L I P A++ + SNPV+
Sbjct: 65 LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 107 IAAEV 111
+A ++
Sbjct: 125 LATQL 129
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 17/188 (9%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
+D+V I AG +KPG TR +L N I K + + + + + +NPV+ +
Sbjct: 74 ADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD---ILTY 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
+K +G E+ + TTLD R + + IG H G T LP++S A
Sbjct: 131 ATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH-GDTELPVWSHA 189
Query: 170 T----------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA 219
K++ EE+ + ++ ++E KG+ +A + A A
Sbjct: 190 NVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGVAMSLARITKA 246
Query: 220 CLMGLNGV 227
L N +
Sbjct: 247 ILHNENSI 254
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 17/188 (9%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
+D+V I AG +KPG TR +L N I K + + + + + +NPV+ +
Sbjct: 74 ADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD---ILTY 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
+K +G E+ + TTLD R + + IG H G T LP++S A
Sbjct: 131 ATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-GDTELPVWSHA 189
Query: 170 T----------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA 219
K++ EE+ + ++ ++E KG+ +A + A A
Sbjct: 190 NVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGVAMSLARITKA 246
Query: 220 CLMGLNGV 227
L N +
Sbjct: 247 ILHNENSI 254
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S +V++ AGV ++ G +R +L N + K + I Y P+ ++ ++SNPV+ +A
Sbjct: 90 SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVDILTYVA- 148
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGH--------AGVT 161
+K +G + + LD R + K +G H +GV
Sbjct: 149 --WKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSVAVWSGVN 206
Query: 162 IL-PLFSQATPKSNNLSD-EEIKALTKRTQDGGTEVVEAK 199
+ + Q P+ +D E K + K + EV++ K
Sbjct: 207 VAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAYEVIKLK 246
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 106/253 (41%), Gaps = 20/253 (7%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S +VII AG ++ G +R +L N I K + + Y P+ + ++SNPV+ +A
Sbjct: 88 SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVA- 146
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
+K +G + + LD R + + +G H G + +P++S
Sbjct: 147 --WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGM 203
Query: 170 TPKSNNLS-----------DEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
+L E+ K + K+ + EV++ KG + ++ + A A+
Sbjct: 204 NVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKL---KGYTSWAIGLSVADLAE 260
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
+ + L V + + + F + LG+NG +++ + S+ E + +S
Sbjct: 261 SIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKS-- 318
Query: 279 PELKASIEKGIQF 291
+ I+K +QF
Sbjct: 319 ADTLWGIQKELQF 331
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 106/253 (41%), Gaps = 20/253 (7%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S +VII AG ++ G +R +L N I K + + Y P+ + ++SNPV+ +A
Sbjct: 88 SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVA- 146
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
+K +G + + LD R + + +G H G + +P++S
Sbjct: 147 --WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGM 203
Query: 170 TPKSNNLS-----------DEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
+L E+ K + K+ + EV++ KG + ++ + A A+
Sbjct: 204 NVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKL---KGYTSWAIGLSVADLAE 260
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
+ + L V + + + F + LG+NG +++ + S+ E + +S
Sbjct: 261 SIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKS-- 318
Query: 279 PELKASIEKGIQF 291
+ I+K +QF
Sbjct: 319 ADTLWGIQKELQF 331
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHAL-VNMISNPVNST 104
A + +DV ++ PR GM R DL + NA I A+ + V ++ NP N+
Sbjct: 82 AFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTN 141
Query: 105 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILP 164
IA K A +K + LD RA + A K + G+ T+ P
Sbjct: 142 AYIA---MKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYP 198
Query: 165 LFSQATPKSNNL 176
F AT + +L
Sbjct: 199 DFRFATAEGESL 210
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 17/251 (6%)
Query: 49 GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIA 108
GS +V+I AG ++ G +R +L N I K + I + P ++ ++SNPV+ +A
Sbjct: 89 GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDVLTYVA 148
Query: 109 AEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQ 168
+K +G + + LD R + + IG H G ++ ++S
Sbjct: 149 ---WKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEH-GDSVPSVWSG 204
Query: 169 ATPKS--------NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADAC 220
S N ++ K L K D EV++ KG + ++ + A A+
Sbjct: 205 MNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL---KGYTSWAIGLSVADLAETI 261
Query: 221 LMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPE 280
+ L V + + + F + L +G ++ + L E+Q L+
Sbjct: 262 MKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATT 320
Query: 281 LKASIEKGIQF 291
L I+K ++F
Sbjct: 321 L-WDIQKDLKF 330
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 17/251 (6%)
Query: 49 GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIA 108
GS +V+I AG ++ G +R +L N I K + I + P ++ ++SNPV+ +A
Sbjct: 88 GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDVLTYVA 147
Query: 109 AEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQ 168
+K +G + + LD R + + IG H G ++ ++S
Sbjct: 148 ---WKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEH-GDSVPSVWSG 203
Query: 169 ATPKS--------NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADAC 220
S N ++ K L K D EV++ KG + ++ + A A+
Sbjct: 204 MNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL---KGYTSWAIGLSVADLAETI 260
Query: 221 LMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPE 280
+ L V + + + F + L +G ++ + L E+Q L+
Sbjct: 261 MKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATT 319
Query: 281 LKASIEKGIQF 291
L I+K ++F
Sbjct: 320 L-WDIQKDLKF 329
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 9/146 (6%)
Query: 45 KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAI-ANYCPHALVNMISNPVNS 103
+ E D ++ PR PGM R L +IN I A+ A + V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 104 TVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL 163
I K A K +T LD RAK A K I G+ T +
Sbjct: 164 NALIC---LKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 220
Query: 164 PLFSQATPKSNNLSDEEIKALTKRTQ 189
P F A + +K + KRT+
Sbjct: 221 PDFLNA-----KIDGRPVKEVIKRTK 241
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 22/254 (8%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S +VII AG G TR DL N I+K++ + P + +++NPV+ I
Sbjct: 88 SKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILT 143
Query: 110 EVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS- 167
V K + ++ G LD R + K +G H G + +P++S
Sbjct: 144 YVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSG 202
Query: 168 ----QATPKSNN------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFA 217
T KS N + + K + K+ +GG EV++ KG + ++ + A
Sbjct: 203 VNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDM---KGYTSWAIGLSVTDLA 259
Query: 218 DACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESL 277
+ L L V + + E F + LG++G + + + + E++GL
Sbjct: 260 RSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTA--EEEGLLKK 317
Query: 278 KPELKASIEKGIQF 291
+ +++K ++
Sbjct: 318 SADTLWNMQKNLEL 331
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S +V++ AGV ++ G +R +L N + K + I Y P ++ ++SNPV+ +
Sbjct: 89 SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT- 147
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGK 141
+K +G + + LD R + A K
Sbjct: 148 --WKLSGLPKHRVIGSGCNLDSARFRYLMAEK 177
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 50 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
S +V++ AGV ++ G +R +L N + K + I Y P ++ ++SNPV+ +
Sbjct: 89 SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT- 147
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGK 141
+K +G + + LD R + A K
Sbjct: 148 --WKLSGLPKHRVIGSGCNLDSARFRYLMAEK 177
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHAL-VNMISNPVNST 104
A + +DV ++ PR PGM R DL NA I AI + V ++ NP N+
Sbjct: 80 AFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTN 139
Query: 105 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGK 141
IA K A + K + LD RA + A K
Sbjct: 140 AYIA---MKSAPSLPAKNFTAMLRLDHNRALSQIAAK 173
>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|2I6T|B Chain B, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|A Chain A, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|B Chain B, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
Length = 303
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 24/194 (12%)
Query: 69 DLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-T 127
D+ N + ++L A+ +Y H+++ + S PV I V K T+ ++ G+
Sbjct: 96 DVVQSNVDMFRALVPALGHYSQHSVLLVASQPV----EIMTYVTWKLSTFPANRVIGIGC 151
Query: 128 TLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSN-------NLSDEE 180
LD R + IG +L Q S+ N + E
Sbjct: 152 NLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQEEVVSHTSQVQLSNRAMEL 211
Query: 181 IKALTKRTQDGGTEVVEA--------KAGKGSATLSMAYA---GAVFADA-CLMGLNGVP 228
++ +R+ G V + K + L+ Y VF C++G NGV
Sbjct: 212 LRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVS 271
Query: 229 DIVECTFVQSSVTE 242
++++ T + +VTE
Sbjct: 272 EVIKTTLKEDTVTE 285
>pdb|1F1C|A Chain A, Crystal Structure Of Cytochrome C549
pdb|1F1C|B Chain B, Crystal Structure Of Cytochrome C549
Length = 129
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 20 GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV 78
+AA V +I +P +G+ +L +L+ SD+ P+ ++ DDL+N+ I+
Sbjct: 66 NIAALVDYIKNPTTYDGFVEISELHPSLKSSDI------FPKMRNISEDDLYNVAGYIL 118
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 162 ILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 221
I + S A P+ ++ SD E++ T R Q G + ++A+ L Y G F + C
Sbjct: 48 IKWILSSAAPQGSDSSDSELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRG--FKNECP 105
Query: 222 MGL 224
GL
Sbjct: 106 TGL 108
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 5 PLVSSLSLYDIANTPGVAAD---------VSHINSP-AQVEGYAGEEQLGKALEGSDVVI 54
P + SL +I T +A+D V ++N P G+AG G +G ++V+
Sbjct: 219 PWYAGQSLXEILETVEIASDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVV 278
Query: 55 IPAG 58
+P+G
Sbjct: 279 LPSG 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,117,536
Number of Sequences: 62578
Number of extensions: 319474
Number of successful extensions: 867
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 88
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)