Query 022546
Match_columns 295
No_of_seqs 127 out of 1141
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0039 Mdh Malate/lactate deh 100.0 7.4E-68 1.6E-72 474.7 29.4 278 3-293 21-312 (313)
2 TIGR01772 MDH_euk_gproteo mala 100.0 1.2E-67 2.5E-72 479.3 29.9 291 1-293 19-311 (312)
3 cd01337 MDH_glyoxysomal_mitoch 100.0 2.7E-67 5.9E-72 476.1 29.8 289 1-292 20-310 (310)
4 cd05290 LDH_3 A subgroup of L- 100.0 1.7E-65 3.7E-70 465.2 28.6 269 2-285 19-306 (307)
5 KOG1495 Lactate dehydrogenase 100.0 1.1E-64 2.4E-69 434.6 24.4 270 3-289 41-330 (332)
6 TIGR01771 L-LDH-NAD L-lactate 100.0 2.7E-64 5.9E-69 456.4 27.9 268 1-283 15-299 (299)
7 PTZ00325 malate dehydrogenase; 100.0 9.8E-63 2.1E-67 448.4 32.5 288 2-294 29-319 (321)
8 TIGR01759 MalateDH-SF1 malate 100.0 2.2E-63 4.8E-68 453.7 27.6 275 1-288 23-323 (323)
9 cd05293 LDH_1 A subgroup of L- 100.0 4.3E-63 9.4E-68 450.7 28.6 272 1-286 22-311 (312)
10 PLN00106 malate dehydrogenase 100.0 1.5E-62 3.2E-67 447.5 30.8 281 1-286 38-322 (323)
11 PLN02602 lactate dehydrogenase 100.0 6.2E-63 1.3E-67 454.5 28.0 273 2-288 57-348 (350)
12 PLN00135 malate dehydrogenase 100.0 1.7E-62 3.6E-67 444.7 29.3 273 9-293 15-309 (309)
13 PRK05086 malate dehydrogenase; 100.0 1.3E-61 2.9E-66 441.5 31.9 288 3-294 23-312 (312)
14 PRK00066 ldh L-lactate dehydro 100.0 1.4E-61 3E-66 441.9 30.5 273 1-288 25-313 (315)
15 TIGR01756 LDH_protist lactate 100.0 2.4E-61 5.3E-66 438.2 29.5 273 9-293 17-313 (313)
16 PRK05442 malate dehydrogenase; 100.0 1E-61 2.2E-66 443.3 26.9 276 3-291 26-325 (326)
17 cd00300 LDH_like L-lactate deh 100.0 2.6E-61 5.6E-66 438.2 28.3 271 1-285 17-299 (300)
18 PLN00112 malate dehydrogenase 100.0 3.3E-61 7.1E-66 451.8 29.6 277 4-293 130-425 (444)
19 cd00704 MDH Malate dehydrogena 100.0 1.4E-61 3E-66 442.5 26.4 276 2-289 21-323 (323)
20 TIGR01757 Malate-DH_plant mala 100.0 4.4E-61 9.5E-66 445.0 28.7 278 2-292 65-368 (387)
21 cd05291 HicDH_like L-2-hydroxy 100.0 8.7E-61 1.9E-65 436.4 28.0 270 2-286 20-305 (306)
22 KOG1494 NAD-dependent malate d 100.0 3.7E-60 8.1E-65 408.5 26.7 293 1-294 48-341 (345)
23 cd01338 MDH_choloroplast_like 100.0 1.5E-59 3.2E-64 429.0 28.7 276 2-289 23-321 (322)
24 PTZ00117 malate dehydrogenase; 100.0 7.7E-59 1.7E-63 425.1 30.9 276 3-291 26-317 (319)
25 TIGR01763 MalateDH_bact malate 100.0 8E-59 1.7E-63 422.2 28.1 269 3-286 22-303 (305)
26 TIGR01758 MDH_euk_cyt malate d 100.0 1.5E-58 3.3E-63 422.7 27.6 277 3-289 21-323 (324)
27 PTZ00082 L-lactate dehydrogena 100.0 7.6E-58 1.6E-62 418.1 30.5 271 3-286 27-318 (321)
28 cd05292 LDH_2 A subgroup of L- 100.0 4.8E-58 1E-62 418.3 28.4 270 2-286 20-306 (308)
29 cd01336 MDH_cytoplasmic_cytoso 100.0 3.3E-57 7.1E-62 414.6 26.8 276 2-289 23-325 (325)
30 cd05295 MDH_like Malate dehydr 100.0 6.4E-57 1.4E-61 422.6 26.1 266 9-289 156-451 (452)
31 cd01339 LDH-like_MDH L-lactate 100.0 1.5E-55 3.4E-60 401.0 29.1 270 3-285 19-299 (300)
32 cd05294 LDH-like_MDH_nadp A la 100.0 2E-55 4.3E-60 400.9 27.8 271 2-286 21-307 (309)
33 PRK06223 malate dehydrogenase; 100.0 4.4E-54 9.6E-59 392.8 29.3 272 3-287 23-305 (307)
34 cd00650 LDH_MDH_like NAD-depen 100.0 1.5E-50 3.3E-55 361.7 27.1 235 3-285 20-262 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 1.1E-48 2.3E-53 331.0 18.5 277 9-293 37-331 (332)
36 PF02866 Ldh_1_C: lactate/mala 100.0 1.1E-36 2.3E-41 256.2 17.7 160 127-292 1-174 (174)
37 cd05197 GH4_glycoside_hydrolas 100.0 2.2E-30 4.7E-35 244.6 24.8 263 6-288 28-391 (425)
38 cd05296 GH4_P_beta_glucosidase 100.0 2.5E-29 5.5E-34 237.0 24.6 264 6-288 28-380 (419)
39 PF00056 Ldh_1_N: lactate/mala 100.0 1E-29 2.2E-34 206.4 8.6 118 1-125 20-141 (141)
40 PRK15076 alpha-galactosidase; 100.0 1.2E-27 2.5E-32 226.8 23.7 267 4-288 26-385 (431)
41 cd05298 GH4_GlvA_pagL_like Gly 100.0 1E-26 2.2E-31 220.1 26.3 271 6-288 28-394 (437)
42 COG1486 CelF Alpha-galactosida 99.9 1.5E-24 3.2E-29 201.5 22.7 268 7-288 32-397 (442)
43 cd05297 GH4_alpha_glucosidase_ 99.9 4.7E-24 1E-28 202.4 24.1 264 8-288 30-388 (423)
44 PF02056 Glyco_hydro_4: Family 99.8 2.5E-18 5.5E-23 144.1 10.7 128 7-144 28-183 (183)
45 PF11975 Glyco_hydro_4C: Famil 97.2 0.0033 7.1E-08 55.1 10.1 78 203-289 134-215 (232)
46 COG1004 Ugd Predicted UDP-gluc 91.9 6.8 0.00015 37.0 14.1 63 40-108 67-131 (414)
47 TIGR01915 npdG NADPH-dependent 89.5 4.9 0.00011 34.6 10.5 76 8-103 25-106 (219)
48 PRK08293 3-hydroxybutyryl-CoA 84.5 4.7 0.0001 36.3 7.8 65 41-126 76-141 (287)
49 PF01073 3Beta_HSD: 3-beta hyd 81.9 7.2 0.00016 35.0 7.9 89 2-91 18-109 (280)
50 PF02423 OCD_Mu_crystall: Orni 76.3 4.7 0.0001 36.9 5.0 48 4-57 151-200 (313)
51 TIGR00640 acid_CoA_mut_C methy 73.2 27 0.00059 27.6 8.0 63 48-130 52-117 (132)
52 PLN02353 probable UDP-glucose 71.3 9.7 0.00021 37.1 6.0 68 40-109 69-139 (473)
53 PRK05808 3-hydroxybutyryl-CoA 66.2 19 0.00041 32.2 6.4 64 41-126 75-139 (282)
54 PRK07066 3-hydroxybutyryl-CoA 64.1 23 0.00051 32.6 6.7 66 41-126 75-140 (321)
55 PF04026 SpoVG: SpoVG; InterP 63.4 30 0.00066 25.2 5.8 41 235-278 36-76 (84)
56 PRK06035 3-hydroxyacyl-CoA deh 62.9 26 0.00057 31.5 6.8 64 41-126 78-142 (291)
57 PF08885 GSCFA: GSCFA family; 62.8 22 0.00049 31.5 6.1 63 43-105 95-181 (251)
58 PF02719 Polysacc_synt_2: Poly 60.9 16 0.00034 33.3 4.8 140 7-168 23-184 (293)
59 COG2085 Predicted dinucleotide 60.4 39 0.00084 29.2 6.9 42 44-101 55-96 (211)
60 COG1250 FadB 3-hydroxyacyl-CoA 60.4 28 0.00061 31.9 6.4 65 40-126 74-139 (307)
61 PRK06407 ornithine cyclodeamin 59.5 15 0.00033 33.4 4.6 50 5-58 140-191 (301)
62 PF01210 NAD_Gly3P_dh_N: NAD-d 58.4 11 0.00023 30.7 3.1 72 8-98 23-103 (157)
63 cd01833 XynB_like SGNH_hydrola 58.4 39 0.00085 26.7 6.4 49 48-100 39-88 (157)
64 PF03721 UDPG_MGDP_dh_N: UDP-g 58.2 12 0.00025 31.5 3.4 74 33-116 63-139 (185)
65 COG1086 Predicted nucleoside-d 57.9 93 0.002 31.0 9.7 99 6-104 274-386 (588)
66 PRK08269 3-hydroxybutyryl-CoA 57.6 31 0.00066 31.6 6.3 72 33-126 64-136 (314)
67 cd01836 FeeA_FeeB_like SGNH_hy 57.5 40 0.00087 27.7 6.6 49 48-100 66-115 (191)
68 COG2423 Predicted ornithine cy 56.9 14 0.00031 34.2 3.9 47 7-57 155-203 (330)
69 PRK06199 ornithine cyclodeamin 54.3 24 0.00053 33.3 5.1 51 4-57 178-231 (379)
70 cd01838 Isoamyl_acetate_hydrol 54.1 45 0.00098 27.3 6.3 50 49-101 63-117 (199)
71 cd02071 MM_CoA_mut_B12_BD meth 53.8 52 0.0011 25.4 6.2 63 48-130 49-114 (122)
72 PRK12549 shikimate 5-dehydroge 52.7 33 0.00071 30.9 5.5 47 7-56 151-199 (284)
73 cd00762 NAD_bind_malic_enz NAD 52.6 32 0.00069 30.6 5.3 67 41-127 96-167 (254)
74 PF11239 DUF3040: Protein of u 51.9 16 0.00034 26.4 2.7 19 265-283 2-20 (82)
75 COG0565 LasT rRNA methylase [T 51.6 22 0.00047 31.4 4.0 52 7-61 30-84 (242)
76 PRK07589 ornithine cyclodeamin 51.5 28 0.00061 32.5 5.0 47 6-57 153-201 (346)
77 cd01844 SGNH_hydrolase_like_6 51.3 33 0.00072 28.0 5.0 48 48-101 56-103 (177)
78 cd05212 NAD_bind_m-THF_DH_Cycl 51.2 37 0.00079 27.3 5.0 52 7-60 28-82 (140)
79 TIGR02371 ala_DH_arch alanine 50.7 23 0.00049 32.7 4.2 48 5-57 151-200 (325)
80 PF00185 OTCace: Aspartate/orn 47.8 16 0.00035 29.8 2.5 62 32-100 59-121 (158)
81 PF04432 FrhB_FdhB_C: Coenzyme 46.8 60 0.0013 26.4 5.8 62 91-156 4-72 (161)
82 COG0426 FpaA Uncharacterized f 46.4 88 0.0019 29.7 7.4 78 73-159 259-341 (388)
83 PRK06823 ornithine cyclodeamin 46.2 43 0.00094 30.7 5.3 48 6-58 152-201 (315)
84 cd04121 Rab40 Rab40 subfamily. 45.5 43 0.00093 28.0 4.9 47 47-103 76-122 (189)
85 cd01828 sialate_O-acetylestera 45.1 78 0.0017 25.3 6.3 49 48-100 47-96 (169)
86 PRK06130 3-hydroxybutyryl-CoA 44.8 67 0.0014 29.0 6.4 17 41-57 71-87 (311)
87 cd01841 NnaC_like NnaC (CMP-Ne 43.9 82 0.0018 25.3 6.3 49 48-100 50-99 (174)
88 PRK15098 beta-D-glucoside gluc 43.8 27 0.00059 36.2 4.0 56 45-104 497-558 (765)
89 PRK13259 regulatory protein Sp 43.6 44 0.00095 25.0 4.0 41 235-278 36-76 (94)
90 PF09370 TIM-br_sig_trns: TIM- 42.8 1.7E+02 0.0037 26.3 8.2 89 48-139 169-262 (268)
91 cd01827 sialate_O-acetylestera 41.7 1E+02 0.0022 25.1 6.6 49 49-100 67-117 (188)
92 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 41.6 52 0.0011 27.3 4.8 50 46-104 73-122 (182)
93 cd01831 Endoglucanase_E_like E 41.4 1E+02 0.0022 24.8 6.5 48 50-101 56-106 (169)
94 PRK15057 UDP-glucose 6-dehydro 41.2 1.6E+02 0.0035 27.8 8.5 63 41-108 65-128 (388)
95 PF07685 GATase_3: CobB/CobQ-l 40.8 34 0.00074 27.8 3.4 39 45-87 3-41 (158)
96 PRK14619 NAD(P)H-dependent gly 40.8 98 0.0021 28.0 6.8 64 19-100 17-84 (308)
97 PTZ00345 glycerol-3-phosphate 40.4 1.5E+02 0.0032 27.9 8.0 73 8-99 42-130 (365)
98 TIGR03310 matur_ygfJ molybdenu 40.4 31 0.00067 28.2 3.2 50 51-100 1-50 (188)
99 PRK09458 pspB phage shock prot 40.2 60 0.0013 23.2 4.0 30 265-294 35-67 (75)
100 PRK00961 H(2)-dependent methyl 40.2 49 0.0011 30.0 4.4 51 40-108 133-183 (342)
101 PRK11154 fadJ multifunctional 40.1 84 0.0018 32.3 6.8 69 33-126 377-446 (708)
102 PF03807 F420_oxidored: NADP o 39.3 27 0.00058 25.3 2.4 43 42-100 54-96 (96)
103 PRK12921 2-dehydropantoate 2-r 39.3 1.1E+02 0.0024 27.3 6.9 66 42-130 61-128 (305)
104 PRK09260 3-hydroxybutyryl-CoA 38.7 98 0.0021 27.6 6.4 17 41-57 73-89 (288)
105 cd05312 NAD_bind_1_malic_enz N 38.6 37 0.00081 30.6 3.5 66 41-126 95-165 (279)
106 TIGR03376 glycerol3P_DH glycer 37.9 2.1E+02 0.0045 26.6 8.5 74 7-99 30-117 (342)
107 cd04502 SGNH_hydrolase_like_7 37.6 1.1E+02 0.0025 24.4 6.2 48 49-100 50-98 (171)
108 PF13460 NAD_binding_10: NADH( 37.4 80 0.0017 25.5 5.2 45 42-98 53-97 (183)
109 TIGR01723 hmd_TIGR 5,10-methen 37.2 55 0.0012 29.7 4.3 52 40-109 131-182 (340)
110 PRK08618 ornithine cyclodeamin 36.9 52 0.0011 30.2 4.4 50 5-58 150-201 (325)
111 cd04131 Rnd Rnd subfamily. Th 36.7 65 0.0014 26.5 4.6 50 46-104 69-118 (178)
112 PF02737 3HCDH_N: 3-hydroxyacy 36.6 80 0.0017 26.2 5.1 50 33-102 66-116 (180)
113 COG0240 GpsA Glycerol-3-phosph 35.5 74 0.0016 29.4 5.0 116 8-159 25-156 (329)
114 PRK08268 3-hydroxy-acyl-CoA de 35.5 61 0.0013 31.9 4.8 16 41-57 79-94 (507)
115 PF11458 Mistic: Membrane-inte 35.4 79 0.0017 22.5 4.0 31 265-295 2-32 (84)
116 TIGR03289 frhB coenzyme F420 h 35.4 1.6E+02 0.0036 26.4 7.2 62 90-154 91-161 (275)
117 PF00919 UPF0004: Uncharacteri 35.2 1.4E+02 0.003 22.2 5.7 42 47-99 34-77 (98)
118 cd01825 SGNH_hydrolase_peri1 S 35.1 1.3E+02 0.0029 24.2 6.3 51 48-101 55-106 (189)
119 cd01820 PAF_acetylesterase_lik 35.0 1.1E+02 0.0024 25.7 5.9 47 49-99 89-136 (214)
120 TIGR01777 yfcH conserved hypot 34.8 80 0.0017 27.6 5.2 48 44-91 52-103 (292)
121 PF03949 Malic_M: Malic enzyme 34.5 34 0.00073 30.5 2.6 51 42-106 97-151 (255)
122 PRK15469 ghrA bifunctional gly 34.3 76 0.0016 29.1 5.0 45 42-99 183-227 (312)
123 cd02067 B12-binding B12 bindin 34.0 1.4E+02 0.003 22.5 5.8 53 48-116 49-102 (119)
124 PRK08291 ectoine utilization p 33.7 68 0.0015 29.5 4.6 49 6-58 156-206 (330)
125 PF00071 Ras: Ras family; Int 33.3 62 0.0013 25.5 3.8 50 45-104 67-117 (162)
126 cd05213 NAD_bind_Glutamyl_tRNA 33.3 1.6E+02 0.0035 26.7 7.0 78 6-105 201-280 (311)
127 PRK00094 gpsA NAD(P)H-dependen 31.9 2.6E+02 0.0056 25.1 8.2 46 41-102 63-109 (325)
128 TIGR02440 FadJ fatty oxidation 31.9 1.3E+02 0.0029 30.8 6.8 65 40-126 376-441 (699)
129 PRK07819 3-hydroxybutyryl-CoA 31.5 1.5E+02 0.0033 26.6 6.4 66 40-127 76-143 (286)
130 PTZ00317 NADP-dependent malic 31.4 98 0.0021 30.8 5.4 71 41-131 371-447 (559)
131 PRK07530 3-hydroxybutyryl-CoA 31.1 1.5E+02 0.0032 26.5 6.3 16 41-57 76-91 (292)
132 PRK10433 putative RNA methyltr 31.0 1.6E+02 0.0035 25.7 6.2 52 7-61 28-82 (228)
133 cd01832 SGNH_hydrolase_like_1 30.6 1.5E+02 0.0032 24.0 5.8 49 48-101 66-115 (185)
134 cd04133 Rop_like Rop subfamily 30.6 1E+02 0.0022 25.4 4.8 50 46-104 69-118 (176)
135 PF04016 DUF364: Domain of unk 30.5 42 0.00091 27.1 2.3 76 42-140 55-130 (147)
136 COG1035 FrhB Coenzyme F420-red 30.4 1.7E+02 0.0038 27.1 6.6 77 76-155 128-212 (332)
137 cd01823 SEST_like SEST_like. A 30.4 1.4E+02 0.003 25.8 5.9 27 74-100 129-155 (259)
138 PRK12439 NAD(P)H-dependent gly 30.3 99 0.0022 28.5 5.1 47 41-103 69-116 (341)
139 PLN03080 Probable beta-xylosid 30.2 55 0.0012 34.1 3.7 57 45-103 483-544 (779)
140 PF02882 THF_DHG_CYH_C: Tetrah 30.0 56 0.0012 26.9 3.0 52 8-61 37-91 (160)
141 TIGR02441 fa_ox_alpha_mit fatt 29.3 1.2E+02 0.0025 31.5 5.8 64 41-126 407-471 (737)
142 PRK07531 bifunctional 3-hydrox 29.2 1.4E+02 0.0031 29.1 6.3 17 41-57 72-88 (495)
143 cd00877 Ran Ran (Ras-related n 29.1 1.1E+02 0.0024 24.4 4.8 26 79-104 92-117 (166)
144 PRK06129 3-hydroxyacyl-CoA deh 29.1 1.6E+02 0.0035 26.6 6.2 17 41-57 74-90 (308)
145 PF02492 cobW: CobW/HypB/UreG, 28.9 86 0.0019 25.8 4.1 40 45-95 138-177 (178)
146 PRK09325 coenzyme F420-reducin 28.8 1.6E+02 0.0035 26.4 6.1 65 88-154 91-163 (282)
147 TIGR02992 ectoine_eutC ectoine 28.8 86 0.0019 28.8 4.4 49 6-58 153-203 (326)
148 KOG0652 26S proteasome regulat 28.7 1.3E+02 0.0028 27.2 5.2 66 77-146 294-362 (424)
149 PRK07502 cyclohexadienyl dehyd 28.6 2.2E+02 0.0047 25.7 7.0 48 3-58 27-75 (307)
150 PLN03129 NADP-dependent malic 28.5 1.3E+02 0.0027 30.2 5.6 71 41-131 391-467 (581)
151 COG0078 ArgF Ornithine carbamo 28.5 54 0.0012 30.0 2.8 20 33-55 208-227 (310)
152 PRK14178 bifunctional 5,10-met 28.1 92 0.002 28.1 4.3 51 8-60 153-206 (279)
153 TIGR02437 FadB fatty oxidation 28.1 1.7E+02 0.0037 30.2 6.7 64 41-126 385-449 (714)
154 TIGR03026 NDP-sugDHase nucleot 28.0 2.3E+02 0.005 26.8 7.3 62 41-108 68-131 (411)
155 PF02153 PDH: Prephenate dehyd 27.8 98 0.0021 27.3 4.5 74 1-99 5-80 (258)
156 PRK06141 ornithine cyclodeamin 27.8 1.1E+02 0.0024 27.8 5.0 47 7-58 150-198 (314)
157 cd07368 PhnC_Bs_like PhnC is a 27.6 2.1E+02 0.0046 25.6 6.6 36 67-103 24-59 (277)
158 COG2088 SpoVG Uncharacterized 27.5 1.1E+02 0.0024 22.5 3.7 43 235-280 36-78 (95)
159 PF08899 DUF1844: Domain of un 26.7 79 0.0017 22.5 2.9 20 264-283 53-72 (74)
160 cd01873 RhoBTB RhoBTB subfamil 26.7 1.2E+02 0.0027 25.3 4.7 50 46-104 84-133 (195)
161 KOG2304 3-hydroxyacyl-CoA dehy 26.6 1.4E+02 0.0031 26.4 4.9 65 41-126 88-153 (298)
162 smart00775 LNS2 LNS2 domain. T 26.2 1.2E+02 0.0026 24.6 4.4 40 80-126 105-148 (157)
163 smart00176 RAN Ran (Ras-relate 26.1 1.3E+02 0.0029 25.3 4.8 49 45-103 63-111 (200)
164 cd01839 SGNH_arylesterase_like 26.0 1.8E+02 0.0038 24.2 5.6 50 48-100 78-134 (208)
165 PRK07340 ornithine cyclodeamin 25.8 1.2E+02 0.0025 27.6 4.7 47 7-59 150-198 (304)
166 COG0771 MurD UDP-N-acetylmuram 25.3 2E+02 0.0043 28.0 6.2 104 8-116 31-136 (448)
167 PLN03209 translocon at the inn 25.3 2.3E+02 0.005 28.5 6.8 57 42-99 152-208 (576)
168 PF09695 YtfJ_HI0045: Bacteria 25.1 1.4E+02 0.003 24.7 4.4 31 247-277 126-156 (160)
169 PRK14194 bifunctional 5,10-met 24.8 2.3E+02 0.0051 25.9 6.3 71 8-100 160-234 (301)
170 PLN02545 3-hydroxybutyryl-CoA 24.8 2.4E+02 0.0053 25.1 6.6 14 44-57 78-91 (295)
171 cd07950 Gallate_Doxase_N The N 24.8 1.3E+02 0.0029 27.0 4.7 36 68-104 27-62 (277)
172 cd00229 SGNH_hydrolase SGNH_hy 24.7 2.2E+02 0.0048 21.8 5.8 56 45-101 61-116 (187)
173 PLN00198 anthocyanidin reducta 24.6 2.7E+02 0.0059 25.1 7.0 58 42-99 73-131 (338)
174 PF14584 DUF4446: Protein of u 24.6 1.1E+02 0.0023 25.0 3.7 48 219-277 103-150 (151)
175 cd04506 SGNH_hydrolase_YpmR_li 24.6 1.6E+02 0.0034 24.3 5.0 52 47-98 66-128 (204)
176 COG4074 Mth H2-forming N5,N10- 24.4 1.5E+02 0.0033 26.0 4.7 15 40-55 131-145 (343)
177 PRK14620 NAD(P)H-dependent gly 24.4 3.8E+02 0.0082 24.3 7.8 47 41-103 62-111 (326)
178 TIGR01181 dTDP_gluc_dehyt dTDP 24.4 1.9E+02 0.004 25.5 5.7 58 42-99 64-125 (317)
179 PRK06522 2-dehydropantoate 2-r 24.3 3.2E+02 0.0069 24.2 7.2 61 41-125 59-120 (304)
180 PRK08229 2-dehydropantoate 2-r 24.2 3.2E+02 0.007 24.8 7.4 48 41-105 66-114 (341)
181 cd04124 RabL2 RabL2 subfamily. 24.1 1.8E+02 0.0038 23.0 5.0 24 80-103 93-116 (161)
182 PRK02628 nadE NAD synthetase; 24.1 3E+02 0.0066 28.1 7.7 74 76-150 347-428 (679)
183 PF01488 Shikimate_DH: Shikima 23.9 1.2E+02 0.0025 23.8 3.8 51 6-61 35-87 (135)
184 PRK00856 pyrB aspartate carbam 23.7 94 0.002 28.4 3.6 19 40-58 204-222 (305)
185 PRK13529 malate dehydrogenase; 23.6 1.7E+02 0.0037 29.2 5.5 71 41-131 372-448 (563)
186 PLN02662 cinnamyl-alcohol dehy 23.6 3E+02 0.0066 24.4 7.0 56 42-98 69-126 (322)
187 KOG0092 GTPase Rab5/YPT51 and 23.5 2.2E+02 0.0048 24.3 5.4 31 75-105 93-124 (200)
188 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 23.4 1.5E+02 0.0033 25.8 4.7 23 81-103 107-129 (232)
189 PRK11730 fadB multifunctional 23.4 2.2E+02 0.0047 29.4 6.5 63 41-126 385-449 (715)
190 TIGR03466 HpnA hopanoid-associ 23.1 3.1E+02 0.0068 24.2 7.0 57 42-99 57-113 (328)
191 TIGR02279 PaaC-3OHAcCoADH 3-hy 22.9 2.5E+02 0.0054 27.6 6.6 49 41-105 77-125 (503)
192 PF12804 NTP_transf_3: MobA-li 22.7 27 0.00058 27.9 -0.1 48 52-99 1-48 (160)
193 PLN03071 GTP-binding nuclear p 22.6 1.7E+02 0.0036 25.0 4.8 26 79-104 105-130 (219)
194 PF06925 MGDG_synth: Monogalac 22.4 4.2E+02 0.0091 21.4 7.4 54 73-130 73-127 (169)
195 COG0796 MurI Glutamate racemas 22.0 5.8E+02 0.013 22.9 11.3 59 43-106 24-83 (269)
196 PF02310 B12-binding: B12 bind 22.0 3.4E+02 0.0073 20.2 6.7 36 122-157 53-90 (121)
197 PF00448 SRP54: SRP54-type pro 21.9 4.2E+02 0.0091 22.3 7.1 70 48-131 82-152 (196)
198 COG2515 Acd 1-aminocyclopropan 21.8 6.4E+02 0.014 23.3 8.8 80 48-138 145-226 (323)
199 TIGR03202 pucB xanthine dehydr 21.8 1E+02 0.0022 25.4 3.2 49 52-101 3-51 (190)
200 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 21.8 1.8E+02 0.0039 25.1 4.9 51 46-105 69-119 (222)
201 PF13651 EcoRI_methylase: Aden 21.8 1.7E+02 0.0037 27.1 4.7 42 45-104 131-172 (336)
202 cd00885 cinA Competence-damage 21.7 70 0.0015 26.5 2.1 44 45-88 54-101 (170)
203 cd04120 Rab12 Rab12 subfamily. 21.3 1.8E+02 0.004 24.5 4.8 20 84-103 97-117 (202)
204 cd04101 RabL4 RabL4 (Rab-like4 21.3 2.1E+02 0.0047 22.3 5.0 8 48-55 74-81 (164)
205 TIGR03471 HpnJ hopanoid biosyn 21.3 2.4E+02 0.0053 27.2 6.2 48 46-106 65-112 (472)
206 cd08060 MPN_UPF0172 Mov34/MPN/ 21.2 1.2E+02 0.0026 25.5 3.5 26 75-100 88-113 (182)
207 PRK12480 D-lactate dehydrogena 21.2 1.9E+02 0.0041 26.7 5.1 52 42-106 191-242 (330)
208 PRK08818 prephenate dehydrogen 21.1 1.7E+02 0.0037 27.5 4.9 35 22-57 21-59 (370)
209 smart00175 RAB Rab subfamily o 20.8 2.4E+02 0.0053 21.8 5.2 13 90-102 104-116 (164)
210 PLN02650 dihydroflavonol-4-red 20.8 3.2E+02 0.007 24.8 6.7 58 42-99 70-128 (351)
211 PLN02928 oxidoreductase family 20.7 94 0.002 28.9 3.0 46 42-100 219-264 (347)
212 TIGR00670 asp_carb_tr aspartat 20.6 94 0.002 28.3 2.9 17 40-56 207-223 (301)
213 cd06547 GH85_ENGase Endo-beta- 20.4 2.3E+02 0.005 26.3 5.5 39 75-113 89-133 (339)
214 PRK14179 bifunctional 5,10-met 20.4 3.5E+02 0.0076 24.5 6.5 52 8-61 159-213 (284)
215 cd02069 methionine_synthase_B1 20.3 1.9E+02 0.0041 24.8 4.7 32 71-102 149-180 (213)
216 PRK14169 bifunctional 5,10-met 20.2 1.9E+02 0.0042 26.1 4.8 52 8-61 157-211 (282)
217 smart00174 RHO Rho (Ras homolo 20.2 2.2E+02 0.0049 22.5 4.9 51 46-105 66-116 (174)
218 COG4262 Predicted spermidine s 20.1 5.5E+02 0.012 24.5 7.7 89 2-97 308-406 (508)
No 1
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=7.4e-68 Score=474.71 Aligned_cols=278 Identities=40% Similarity=0.594 Sum_probs=253.2
Q ss_pred CCCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546 3 LDPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV 78 (295)
Q Consensus 3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~ 78 (295)
++++.+||+|+|+++ ++|.++||+|+.+. ..+.... +.| +++|+|||+||+++|.||||||+|+|++..|++|+
T Consensus 21 ~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~ 98 (313)
T COG0039 21 LQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIV 98 (313)
T ss_pred cccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHH
Confidence 566777999999996 89999999999743 2344432 245 69999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546 79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH 157 (295)
Q Consensus 79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h 157 (295)
+++++.|+++|||++++|+|||+|+|||++ ||++| +|++||||+ |.||++||+++||++++++|++|+++|+|+|
T Consensus 99 ~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~---~k~sg-~p~~rvig~gt~LDsaR~~~~lae~~~v~~~~V~~~ViGeH 174 (313)
T COG0039 99 KDIAKAIAKYAPDAIVLVVTNPVDILTYIA---MKFSG-FPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH 174 (313)
T ss_pred HHHHHHHHhhCCCeEEEEecCcHHHHHHHH---HHhcC-CCccceecccchHHHHHHHHHHHHHhCCChhHceeeEeccC
Confidence 999999999999999999999999999997 89999 999999999 9999999999999999999999999999999
Q ss_pred CCceeeeccccCcCCCCCC-------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCce
Q 022546 158 AGVTILPLFSQATPKSNNL-------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI 230 (295)
Q Consensus 158 g~~~~vp~~s~~~v~~~~~-------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v 230 (295)
|+ ++||+||++++++.++ ++++++++.++++++|++|++.| |.| ++||+|.++++++++|++|++ ++
T Consensus 175 Gd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~A~a~a~~~~ail~d~~---~v 248 (313)
T COG0039 175 GD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPAAALARMVEAILRDEK---RV 248 (313)
T ss_pred CC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhHHHHHHHHHHHHHcCCC---ce
Confidence 99 9999999999987432 23567899999999999999976 444 999999999999999999974 58
Q ss_pred eEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546 231 VECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293 (295)
Q Consensus 231 ~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~ 293 (295)
+|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|+.|++.|++.++.+.++++
T Consensus 249 l~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~~~~~~~ 312 (313)
T COG0039 249 LPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIELVKELVL 312 (313)
T ss_pred EEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8887 899999 89999999999999999999998 99999999999999999999999988764
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=1.2e-67 Score=479.31 Aligned_cols=291 Identities=59% Similarity=0.904 Sum_probs=257.9
Q ss_pred CCCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHH
Q 022546 1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS 80 (295)
Q Consensus 1 l~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~ 80 (295)
|+++++++||+|+|++++.|+++||+|+..+.+++.+.+.+|++++++|||+||+++|.++++|++|++++..|++|+++
T Consensus 19 l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~ 98 (312)
T TIGR01772 19 LKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKD 98 (312)
T ss_pred HHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHH
Confidence 35678999999999988899999999987544666433333567999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCeEEEEecCCccchHHHHHH-HHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCCCC
Q 022546 81 LCTAIANYCPHALVNMISNPVNSTVPIAAE-VFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAG 159 (295)
Q Consensus 81 i~~~i~~~~p~a~viv~tNP~d~~t~~~~~-~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~ 159 (295)
+++.|++++|++++|++|||+|++++++++ +++.+| ||++||||+|.|||+||++++|+++|++|++|+++||||||+
T Consensus 99 i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg-~p~~rViG~g~LDsaR~r~~la~~l~v~~~~v~~~ViGeHg~ 177 (312)
T TIGR01772 99 LVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGV-YDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSG 177 (312)
T ss_pred HHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcC-CChHHEEeeecchHHHHHHHHHHHhCCCHHHeEEEEEEecCC
Confidence 999999999999999999999995443222 377888 999999999779999999999999999999999999999986
Q ss_pred ceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCC
Q 022546 160 VTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSS 239 (295)
Q Consensus 160 ~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~ 239 (295)
++++|+||++++. +.+++++++++.++++++|++|++.|+|||+++||+|.++++++++|+++..+.+.++|+++++|+
T Consensus 178 ~s~vp~~S~~~~~-~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s~~~g~ 256 (312)
T TIGR01772 178 ETIIPLISQCPGK-VLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECAYVESD 256 (312)
T ss_pred Ccccccccccccc-CCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEEEEccC
Confidence 6899999999853 235666689999999999999999766889999999999999999999653334468898888998
Q ss_pred C-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546 240 V-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293 (295)
Q Consensus 240 ~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~ 293 (295)
| .+++|||+||++|++||++++++++|+++|+++|++|++.|++.++++++|+.
T Consensus 257 yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~ 311 (312)
T TIGR01772 257 GVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA 311 (312)
T ss_pred CCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8 78999999999999999999987579999999999999999999999999975
No 3
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.7e-67 Score=476.12 Aligned_cols=289 Identities=67% Similarity=1.017 Sum_probs=257.4
Q ss_pred CCCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHH
Q 022546 1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS 80 (295)
Q Consensus 1 l~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~ 80 (295)
|.++++++||+|+|++.++|+++||+|+..+++++...+++|++++++|||+||+|+|.|++|||+|++++..|++++++
T Consensus 20 l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~ 99 (310)
T cd01337 20 LKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRD 99 (310)
T ss_pred HHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 35688999999999987899999999997555676543445678999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCeEEEEecCCccchHHHHHH-HHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCC-C
Q 022546 81 LCTAIANYCPHALVNMISNPVNSTVPIAAE-VFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH-A 158 (295)
Q Consensus 81 i~~~i~~~~p~a~viv~tNP~d~~t~~~~~-~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~h-g 158 (295)
+++.|++++|+||+|++|||+|+|++++++ ++|.+| ||++||||+|.|||+||++++|+++|+++++|+++||||| |
T Consensus 100 i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~-~p~~rviG~~~LDs~R~~~~la~~l~v~~~~V~~~v~GeHsG 178 (310)
T cd01337 100 LATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGV-YDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSG 178 (310)
T ss_pred HHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcC-CCHHHEEeeechHHHHHHHHHHHHhCcCHHHEEEEEEecCCC
Confidence 999999999999999999999999554332 378888 9999999998899999999999999999999999999999 7
Q ss_pred CceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeC
Q 022546 159 GVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQS 238 (295)
Q Consensus 159 ~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g 238 (295)
+ ++||+||++.+.. .+++++++++.++++++|++|++.|.|||+|+||+|.++++++++|++|+++++.++++++++|
T Consensus 179 d-s~vp~~S~~~~~~-~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s~~~~ 256 (310)
T cd01337 179 V-TILPLLSQCQPPF-TFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECAYVES 256 (310)
T ss_pred C-ceecccccccccc-cCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHHhcCCCcceEEEEEEec
Confidence 8 8999999997743 3556668999999999999999986678999999999999999999987655556778887766
Q ss_pred CCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022546 239 SVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFA 292 (295)
Q Consensus 239 ~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~ 292 (295)
+..+++|||+||++|++|+++++++++|+++|+++|++|++.|++.++++++|+
T Consensus 257 ~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~ 310 (310)
T cd01337 257 DVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310 (310)
T ss_pred cCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 545789999999999999999999734999999999999999999999999885
No 4
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.7e-65 Score=465.22 Aligned_cols=269 Identities=24% Similarity=0.342 Sum_probs=244.4
Q ss_pred CCCCCcCeEEEEeCCC--chhHHHhhhCCCC-C--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCC--HHHHHHHH
Q 022546 2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS-P--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMT--RDDLFNIN 74 (295)
Q Consensus 2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~--r~~~~~~n 74 (295)
..+++++||+|+|+++ ++|+++||+|+.. . ..++++. +| +++++|||+||+|+|.|++|||+ |++++..|
T Consensus 19 ~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvitaG~~~kpg~tr~R~dll~~N 95 (307)
T cd05290 19 LALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITAGPSIDPGNTDDRLDLAQTN 95 (307)
T ss_pred HhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECCCCCCCCCCCchHHHHHHHH
Confidence 4679999999999987 8999999999753 1 2456554 34 68999999999999999999999 79999999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEE
Q 022546 75 AGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPV 153 (295)
Q Consensus 75 ~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~v 153 (295)
++|++++++.|++++|++++|++|||+|+||+++ +|.+| ||++||||+ |.|||+||++++|+++|++|++|+++|
T Consensus 96 ~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~~~~la~~l~v~~~~V~~~V 171 (307)
T cd05290 96 AKIIREIMGNITKVTKEAVIILITNPLDIAVYIA---ATEFD-YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYV 171 (307)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH---HHHhC-cChhheecccchHHHHHHHHHHHHHhCCCcccEEEEE
Confidence 9999999999999999999999999999999997 89999 999999999 999999999999999999999999999
Q ss_pred eeCCCCceeeeccccCcCCCCCC---------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCc
Q 022546 154 IGGHAGVTILPLFSQATPKSNNL---------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGL 224 (295)
Q Consensus 154 iG~hg~~~~vp~~s~~~v~~~~~---------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~ 224 (295)
|||||+ +++|+||++++++.++ .+..++++.++++++|++|++ +||+|+|++|.++++++++|++|.
T Consensus 172 iGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t~~~ia~a~~~ii~ail~d~ 247 (307)
T cd05290 172 LGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWTNAGIAKSASRLIKAILLDE 247 (307)
T ss_pred EecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCeehHHHHHHHHHHHHHHHhCC
Confidence 999999 9999999999976322 122478999999999999999 568999999999999999999886
Q ss_pred CCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 022546 225 NGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI 285 (295)
Q Consensus 225 ~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~ 285 (295)
+ .++|++ +++|+| +++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus 248 ~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~~~ 306 (307)
T cd05290 248 R---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRETI 306 (307)
T ss_pred C---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 4 588887 789998 78999999999999999999998 999999999999999999764
No 5
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.1e-64 Score=434.55 Aligned_cols=270 Identities=25% Similarity=0.382 Sum_probs=247.3
Q ss_pred CCCCcCeEEEEeCCC--chhHHHhhhCCCC---CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546 3 LDPLVSSLSLYDIAN--TPGVAADVSHINS---PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77 (295)
Q Consensus 3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~---~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i 77 (295)
++++++||+|+|.++ ++|++|||+|++. .+++.. + .| +.+.+++++||+|+|..+++|++|++++++|+.|
T Consensus 41 ~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~--~-~D-y~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~i 116 (332)
T KOG1495|consen 41 LKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA--S-KD-YSVSANSKLVIITAGARQSEGESRLDLVQRNVDI 116 (332)
T ss_pred HhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe--c-Cc-ccccCCCcEEEEecCCCCCCCcHHHHHHHHHHHH
Confidence 678999999999988 8999999999873 245553 2 46 5889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546 78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG 156 (295)
Q Consensus 78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~ 156 (295)
++.+++.+.+|.||++++++|||+|+|||++ ||.|| ||++||||+ |+||++|||++++++||++|++++++|+||
T Consensus 117 fK~iip~lv~ySpd~~llvvSNPVDilTYv~---wKLSg-fP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hgwIiGE 192 (332)
T KOG1495|consen 117 FKAIIPALVKYSPDCILLVVSNPVDILTYVT---WKLSG-FPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHGWIIGE 192 (332)
T ss_pred HHHHHHHHhhcCCCeEEEEecCchHHHHHHH---HHHcC-CcccceeccCcCccHHHHHHHHHHHhCCCcccceEEEeec
Confidence 9999999999999999999999999999997 99999 999999999 999999999999999999999999999999
Q ss_pred CCCceeeeccccCcCCCC-----------CCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcC
Q 022546 157 HAGVTILPLFSQATPKSN-----------NLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN 225 (295)
Q Consensus 157 hg~~~~vp~~s~~~v~~~-----------~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~ 225 (295)
||+ +.||+||..++.+. ..+++.|+++.++|.+.+|||+++ ||+|.|++|.++++++++|+.|++
T Consensus 193 HGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---KGyTswaIglsva~l~~ail~n~~ 268 (332)
T KOG1495|consen 193 HGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---KGYTSWAIGLSVADLAQAILRNLR 268 (332)
T ss_pred cCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHhCcC
Confidence 999 89999999988652 245678999999999999999996 589999999999999999999986
Q ss_pred CCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546 226 GVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI 289 (295)
Q Consensus 226 ~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~ 289 (295)
.++|++ .++|.| .+++|||+||++|++|+.++++. +|+++|.++|.+|++.|.+ +++.+
T Consensus 269 ---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~tl~~-~q~~l 330 (332)
T KOG1495|consen 269 ---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAKTLLE-AQKSL 330 (332)
T ss_pred ---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHHHHHH-HHHhc
Confidence 588887 679987 57999999999999999999998 9999999999999999995 55443
No 6
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=2.7e-64 Score=456.42 Aligned_cols=268 Identities=27% Similarity=0.429 Sum_probs=243.0
Q ss_pred CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546 1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG 76 (295)
Q Consensus 1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~ 76 (295)
|+.+++++||+|+|+++ ++|+++||+|+... ..++... +| +++++|||+||+++|.|++|||+|++++.+|++
T Consensus 15 l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~daDivVitag~~rk~g~~R~dll~~N~~ 91 (299)
T TIGR01771 15 LLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS--GD-YSDCKDADLVVITAGAPQKPGETRLELVGRNVR 91 (299)
T ss_pred HHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec--CC-HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH
Confidence 35679999999999987 89999999998632 2344443 34 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546 77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIG 155 (295)
Q Consensus 77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG 155 (295)
+++++++.|++++|+|++|++|||+|+||+++ ++++| +|++||||+ |.||++||++++|++++++|++|+++|||
T Consensus 92 i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~v~G 167 (299)
T TIGR01771 92 IMKSIVPEVVKSGFDGIFLVATNPVDILTYVA---WKLSG-FPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIG 167 (299)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH---HHHhC-CCHHHEEeccchHHHHHHHHHHHHHhCcCcCeEEEEEEe
Confidence 99999999999999999999999999999987 88998 999999999 89999999999999999999999999999
Q ss_pred CCCCceeeeccccCcCCCCCC----------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcC
Q 022546 156 GHAGVTILPLFSQATPKSNNL----------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN 225 (295)
Q Consensus 156 ~hg~~~~vp~~s~~~v~~~~~----------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~ 225 (295)
|||+ +++|+||++++++.++ .+.+++++.++++++|++|++ +||+++|++|.++++++++|++|++
T Consensus 168 eHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a~a~~~~i~ail~d~~ 243 (299)
T TIGR01771 168 EHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIGMAVARIVEAILHDEN 243 (299)
T ss_pred cCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHHHHHHHHHHHHHcCCC
Confidence 9998 8999999999976322 123477999999999999999 5689999999999999999999964
Q ss_pred CCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHH
Q 022546 226 GVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKA 283 (295)
Q Consensus 226 ~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~ 283 (295)
.++|++ +++|+| .+++|||+||+||++|+++++++ +|+++|+++|++|++.|++
T Consensus 244 ---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 244 ---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred ---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence 588997 889998 67899999999999999999998 9999999999999999973
No 7
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-63 Score=448.36 Aligned_cols=288 Identities=58% Similarity=0.895 Sum_probs=257.9
Q ss_pred CCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 022546 2 KLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSL 81 (295)
Q Consensus 2 ~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i 81 (295)
..++.++||+|+|++.+.|+++||+|+.....+...+...+.+++++|||+||+++|.++++|++|.+++..|+++++++
T Consensus 29 ~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i 108 (321)
T PTZ00325 29 KQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDL 108 (321)
T ss_pred hcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999558999999999875444543322134368999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCeEEEEecCCccchHHHHH-HHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCCCCc
Q 022546 82 CTAIANYCPHALVNMISNPVNSTVPIAA-EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGV 160 (295)
Q Consensus 82 ~~~i~~~~p~a~viv~tNP~d~~t~~~~-~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~ 160 (295)
++.|++++|+++++++|||+|+++++++ .+++.+| +|++||||++.|||+||+++||+++|++|++|+++||||||++
T Consensus 109 ~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg-~p~~~viG~g~LDs~R~r~~la~~l~v~~~~V~~~VlGeHGd~ 187 (321)
T PTZ00325 109 VAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGV-YDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGV 187 (321)
T ss_pred HHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccC-CChhheeechhHHHHHHHHHHHHHhCcChhheEEEEEeecCCc
Confidence 9999999999999999999999999873 2347788 9999999997799999999999999999999999999999984
Q ss_pred eeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCCC
Q 022546 161 TILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240 (295)
Q Consensus 161 ~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~~ 240 (295)
++||+||++ +.++++++++++.++++++|++|++.|.|||+|+||+|.++++++++|+++.++++.++++++++|+|
T Consensus 188 s~v~~~S~~---g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~~~~g~y 264 (321)
T PTZ00325 188 TIVPLLSQT---GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDM 264 (321)
T ss_pred ccccchhcc---CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEEEEecCC
Confidence 599999998 33577777999999999999999998767799999999999999999998744445688888889998
Q ss_pred -CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546 241 -TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKGIQFANR 294 (295)
Q Consensus 241 -~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~ 294 (295)
.+++|+|+||++|++|++++++ + +|+++|+++|++|++.|++.++++++|.++
T Consensus 265 g~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~ 319 (321)
T PTZ00325 265 RPECPFFSSPVELGKEGVERVLPIG-PLNAYEEELLEAAVPDLKKNIEKGLEFARK 319 (321)
T ss_pred CCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999 6 999999999999999999999999999986
No 8
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=2.2e-63 Score=453.66 Aligned_cols=275 Identities=29% Similarity=0.403 Sum_probs=244.6
Q ss_pred CCCCCCcC-----eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHH
Q 022546 1 MKLDPLVS-----SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDD 69 (295)
Q Consensus 1 l~~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~ 69 (295)
|+.+++++ ||+|+|+++ ++|+++||+|+.++ ..++++ ++| +++++|||+||+|+|.++++||+|++
T Consensus 23 l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDvVVitAG~~~k~g~tR~d 99 (323)
T TIGR01759 23 IASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAFKDVDAALLVGAFPRKPGMERAD 99 (323)
T ss_pred HHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHhCCCCEEEEeCCCCCCCCCcHHH
Confidence 35678899 999999954 79999999999732 233433 234 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCccchHHHHHHHHHHh-CCCCCCCeeecchhhHHHHHHHHHhhcCCCCc
Q 022546 70 LFNINAGIVKSLCTAIANYCP-HALVNMISNPVNSTVPIAAEVFKKA-GTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVA 147 (295)
Q Consensus 70 ~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~k~s-g~~~~~kviG~t~ld~~R~~~~la~~l~v~~~ 147 (295)
++..|++|++++++.|++++| ++++|++|||+|+||+++ ++.+ | ||++||||+|.||++|||++||+++|++|+
T Consensus 100 ll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g-~p~~rViG~t~LDs~R~r~~la~~l~v~~~ 175 (323)
T TIGR01759 100 LLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA---SKNAPD-IPPKNFSAMTRLDHNRAKYQLAAKAGVPVS 175 (323)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcCC-CCHHHEEEeeHHHHHHHHHHHHHHhCcChH
Confidence 999999999999999999998 999999999999999997 8999 8 999999999999999999999999999999
Q ss_pred cce-EEEeeCCCCceeeeccccCcCCCCCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchh-hHHHHHHHHHHH
Q 022546 148 EVN-VPVIGGHAGVTILPLFSQATPKSNNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATL-SMAYAGAVFADA 219 (295)
Q Consensus 148 ~v~-~~viG~hg~~~~vp~~s~~~v~~~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~-s~a~a~~~~i~a 219 (295)
+|+ .+||||||+ +++|+||++++++.++ +++. +++|.+++++++++|++ +||+++| ++|.++++++++
T Consensus 176 ~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t~~~~~a~a~~~iv~a 251 (323)
T TIGR01759 176 DVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE---ARGASSAASAANAAIDHVRD 251 (323)
T ss_pred HeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh---ccCCcchHHHHHHHHHHHHH
Confidence 995 579999998 8999999999976433 2222 68999999999999999 5688999 577999999999
Q ss_pred HHcCcCCCCceeEEE-EeeC-CC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546 220 CLMGLNGVPDIVECT-FVQS-SV--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKG 288 (295)
Q Consensus 220 i~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~ 288 (295)
|++|++. ..++|++ +++| +| |+++|||+||++|++|++++++ + +|+++|+++|+.|++.|+++++++
T Consensus 252 il~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~~l~~sa~~lk~~~~~~ 323 (323)
T TIGR01759 252 WVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRGKLDATEDELLEEKEEA 323 (323)
T ss_pred HHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHhcC
Confidence 9999732 2588998 8899 88 4899999999999999999999 7 999999999999999999999864
No 9
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.3e-63 Score=450.75 Aligned_cols=272 Identities=25% Similarity=0.372 Sum_probs=244.3
Q ss_pred CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546 1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77 (295)
Q Consensus 1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i 77 (295)
|..+++++||+|+|+++ +.|+++||+|+... ...... +++|+ ++++|||+||+++|.++++||+|++++.+|+++
T Consensus 22 l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvitaG~~~k~g~~R~dll~~N~~i 99 (312)
T cd05293 22 ILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTAGARQNEGESRLDLVQRNVDI 99 (312)
T ss_pred HHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Confidence 34678999999999987 89999999999732 112222 23464 779999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546 78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG 156 (295)
Q Consensus 78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~ 156 (295)
++++++.|++++|++++|++|||+|++|+++ ++++| +|++||||+ |.||++|+++++|+++++++++|+++||||
T Consensus 100 ~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~k~sg-~p~~~viG~gt~Ld~~R~~~~la~~l~v~~~~v~~~v~Ge 175 (312)
T cd05293 100 FKGIIPKLVKYSPNAILLVVSNPVDIMTYVA---WKLSG-LPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGE 175 (312)
T ss_pred HHHHHHHHHHhCCCcEEEEccChHHHHHHHH---HHHhC-CCHHHEEecCchHHHHHHHHHHHHHhCCChhhEEEEEeec
Confidence 9999999999999999999999999999987 89998 999999999 999999999999999999999999999999
Q ss_pred CCCceeeeccccCcCCCCCC-----------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcC
Q 022546 157 HAGVTILPLFSQATPKSNNL-----------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN 225 (295)
Q Consensus 157 hg~~~~vp~~s~~~v~~~~~-----------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~ 225 (295)
||+ +++|+||++++++.++ ++++++++.++++++|++|++ +||+|+||+|.++++++++|++|.+
T Consensus 176 HG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~a~a~~~ii~ail~d~~ 251 (312)
T cd05293 176 HGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKGYTSWAIGLSVADLVDAILRNTG 251 (312)
T ss_pred CCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHcCCC
Confidence 998 8999999999976321 234588999999999999999 5689999999999999999999864
Q ss_pred CCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546 226 GVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286 (295)
Q Consensus 226 ~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~ 286 (295)
.+++++ +++|+| +++++||+||++|++|+++++++ +|+++|+++|++|++.|++.++
T Consensus 252 ---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~~~~~ 311 (312)
T cd05293 252 ---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLWEVQK 311 (312)
T ss_pred ---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHhh
Confidence 577877 789988 58999999999999999999998 9999999999999999998764
No 10
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=1.5e-62 Score=447.49 Aligned_cols=281 Identities=75% Similarity=1.159 Sum_probs=253.8
Q ss_pred CCCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHH
Q 022546 1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS 80 (295)
Q Consensus 1 l~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~ 80 (295)
|.++++++||+|+|++++.|+++||+|+..+..+..+++++|++++++|||+||+++|.++++|++|++++..|++++++
T Consensus 38 l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~ 117 (323)
T PLN00106 38 MKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKT 117 (323)
T ss_pred HHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34678999999999988899999999998655666545667889999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCeEEEEecCCcc----chHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546 81 LCTAIANYCPHALVNMISNPVN----STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGG 156 (295)
Q Consensus 81 i~~~i~~~~p~a~viv~tNP~d----~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~ 156 (295)
+++.+++++|+++++++|||+| ++++++ ++.+| +|++||||+|.||++||++++|+++|+++++|+++|+||
T Consensus 118 i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~---~~~s~-~p~~~viG~~~LDs~Rl~~~lA~~lgv~~~~V~~~ViGe 193 (323)
T PLN00106 118 LCEAVAKHCPNALVNIISNPVNSTVPIAAEVL---KKAGV-YDPKKLFGVTTLDVVRANTFVAEKKGLDPADVDVPVVGG 193 (323)
T ss_pred HHHHHHHHCCCeEEEEeCCCccccHHHHHHHH---HHcCC-CCcceEEEEecchHHHHHHHHHHHhCCChhheEEEEEEe
Confidence 9999999999999999999999 777665 78888 999999999889999999999999999999999999999
Q ss_pred CCCceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEe
Q 022546 157 HAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFV 236 (295)
Q Consensus 157 hg~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~ 236 (295)
||++++||+||++.+... +++++++++.++++++|++|++.|.|||+++||+|.++++++++|++|+++++.++|++++
T Consensus 194 Hg~~s~vp~~S~~~~~~~-~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s~~ 272 (323)
T PLN00106 194 HAGITILPLLSQATPKVS-FTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADACLRGLNGEADVVECSYV 272 (323)
T ss_pred CCCccEeeehhcceeccc-CCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHHHhccCCCceEEEEEEE
Confidence 976689999999976432 6666789999999999999999755789999999999999999999987656679999987
Q ss_pred eCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546 237 QSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286 (295)
Q Consensus 237 ~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~ 286 (295)
+++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus 273 ~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 273 QSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred CcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 77763349999999999999999999769999999999999999998765
No 11
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=6.2e-63 Score=454.55 Aligned_cols=273 Identities=23% Similarity=0.367 Sum_probs=246.0
Q ss_pred CCCCCcCeEEEEeCCC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546 2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV 78 (295)
Q Consensus 2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~ 78 (295)
..+++++||+|+|+++ ++|+++||+|+.. .....+.. +.| +++++|||+||+++|.++++||+|++++.+|++++
T Consensus 57 ~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~~d-y~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~ 134 (350)
T PLN02602 57 LTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-STD-YAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALF 134 (350)
T ss_pred HhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-CCC-HHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 4678999999999987 8999999999863 22234332 345 57899999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546 79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH 157 (295)
Q Consensus 79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h 157 (295)
+++++.|+++||++|+|++|||+|++|+++ ++++| ||++||||+ |.||++|+++++|+++|+++++|+++|||||
T Consensus 135 ~~i~~~I~~~~p~~ivivvtNPvdv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~~ViGeH 210 (350)
T PLN02602 135 RKIIPELAKYSPDTILLIVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEH 210 (350)
T ss_pred HHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHHhC-CCHHHEEeecchHHHHHHHHHHHHHhCCCccceeeeEEecC
Confidence 999999999999999999999999999987 89999 999999999 7999999999999999999999999999999
Q ss_pred CCceeeeccccCcCCCCC-----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546 158 AGVTILPLFSQATPKSNN-----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226 (295)
Q Consensus 158 g~~~~vp~~s~~~v~~~~-----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~ 226 (295)
|+ +++|+||++++++.+ +++++++++.+++++++++|++ +||+|+|++|.++++++++|++|.+
T Consensus 211 Gd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~~gia~a~a~ii~ail~d~~- 285 (350)
T PLN02602 211 GD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTSWAIGYSVASLVRSLLRDQR- 285 (350)
T ss_pred CC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHhcCC-
Confidence 98 999999999986632 2234578999999999999999 5689999999999999999999975
Q ss_pred CCceeEEE-EeeCCC-C--CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546 227 VPDIVECT-FVQSSV-T--ELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG 288 (295)
Q Consensus 227 ~~~v~~~~-~~~g~~-~--~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~ 288 (295)
.++|++ +++|+| . +++|+|+||++|++|+++++++ +|+++|+++|++|++.|++.++..
T Consensus 286 --~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~~~~~~~ 348 (350)
T PLN02602 286 --RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLWEVQSQL 348 (350)
T ss_pred --CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 588888 679998 3 7999999999999999999998 999999999999999999877654
No 12
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=1.7e-62 Score=444.67 Aligned_cols=273 Identities=25% Similarity=0.331 Sum_probs=244.2
Q ss_pred eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 022546 9 SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLC 82 (295)
Q Consensus 9 ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~ 82 (295)
.|+|+|+++ ++|+++||+|+..+ ..++. ++|.+++++|||+||+++|.|+++||+|++++..|++|+++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~ 91 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA 91 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 689999975 79999999998732 23432 2344699999999999999999999999999999999999999
Q ss_pred HHHHhh-CCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccc-eEEEeeCCCC
Q 022546 83 TAIANY-CPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAG 159 (295)
Q Consensus 83 ~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~ 159 (295)
+.|+++ +|+|++|++|||+|+||+++ ++.+| +|++|+||+ |.||++|||++||+++++++++| +++||||||+
T Consensus 92 ~~i~~~~~p~aivivvsNPvDv~t~~~---~~~sg-~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~ 167 (309)
T PLN00135 92 SALEKHAAPDCKVLVVANPANTNALIL---KEFAP-SIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS 167 (309)
T ss_pred HHHHHhcCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence 999996 89999999999999999987 89999 999999999 99999999999999999999999 7999999999
Q ss_pred ceeeeccccCcC----CCCCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCc
Q 022546 160 VTILPLFSQATP----KSNNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPD 229 (295)
Q Consensus 160 ~~~vp~~s~~~v----~~~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~ 229 (295)
+++|+||++++ ++.++ .+.+ .+++.+++++++++|++. +||+|+||+|.++++++++|+++++ ...
T Consensus 168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~--~kg~t~~~ia~a~~~iv~ai~~~~~-~~~ 243 (309)
T PLN00135 168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKA--RKLSSALSAASSACDHIRDWVLGTP-EGT 243 (309)
T ss_pred -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence 89999999999 65433 2333 688999999999999995 3689999999999999999999642 235
Q ss_pred eeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546 230 IVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293 (295)
Q Consensus 230 v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~ 293 (295)
++|++ +++|+| +++++||+||++|++|++.++++ +|+++|+++|++|++.|+++.+++++.|.
T Consensus 244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~~~~~~ 309 (309)
T PLN00135 244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELAYSCLS 309 (309)
T ss_pred EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88988 789998 48999999999999999999898 99999999999999999999999998763
No 13
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-61 Score=441.52 Aligned_cols=288 Identities=53% Similarity=0.802 Sum_probs=256.6
Q ss_pred CCCCcCeEEEEeCCC-chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 022546 3 LDPLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSL 81 (295)
Q Consensus 3 ~~~~~~ei~L~D~~~-~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i 81 (295)
+.+...+|+|+|+++ +.|+++|++|......++++ ..+|++++++|+|+||+++|.++++|++|.+++.+|+++++++
T Consensus 23 ~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~i 101 (312)
T PRK05086 23 QLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNL 101 (312)
T ss_pred CCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 367889999999987 78899999986422345442 2357679999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCeEEEEecCCccchHHHHHHH-HHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCCCCc
Q 022546 82 CTAIANYCPHALVNMISNPVNSTVPIAAEV-FKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGV 160 (295)
Q Consensus 82 ~~~i~~~~p~a~viv~tNP~d~~t~~~~~~-~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~ 160 (295)
++.|++++|+++++++|||+|+||+++++. +|.+| +|++||||+|.|||+||++++|+++|++|++|+++||||||++
T Consensus 102 i~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg-~p~~rvig~~~Lds~R~~~~ia~~l~~~~~~v~~~v~GeHg~~ 180 (312)
T PRK05086 102 VEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGV-YDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180 (312)
T ss_pred HHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcC-CCHHHEEeeecHHHHHHHHHHHHHhCCChhheEEEEEEecCCC
Confidence 999999999999999999999999987433 27778 9999999998899999999999999999999999999999776
Q ss_pred eeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCCC
Q 022546 161 TILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240 (295)
Q Consensus 161 ~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~~ 240 (295)
++||+||++ ++.++++++++++.++++++|++|++.|.|+|+|+||+|.++++++++|+++++++..++|+++++|+-
T Consensus 181 s~~p~~S~~--~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~~~~~~g 258 (312)
T PRK05086 181 TILPLLSQV--PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDG 258 (312)
T ss_pred ceecccccc--CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEEEEeccC
Confidence 899999999 455577777999999999999999997667799999999999999999998865555688887777753
Q ss_pred CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294 (295)
Q Consensus 241 ~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~ 294 (295)
.+++|||+||++|++|+++++++++|+++|+++|++|++.|++.++++++|+.+
T Consensus 259 ~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~ 312 (312)
T PRK05086 259 KYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312 (312)
T ss_pred CcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 468999999999999999999977999999999999999999999999999864
No 14
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-61 Score=441.94 Aligned_cols=273 Identities=27% Similarity=0.408 Sum_probs=248.0
Q ss_pred CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546 1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77 (295)
Q Consensus 1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i 77 (295)
|.++++++||+|+|+++ ++|+++||+|+... .+++..+ ++ +++++|||+||+++|.|++|||+|++++..|+++
T Consensus 25 l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~-~~~~~~adivIitag~~~k~g~~R~dll~~N~~i 101 (315)
T PRK00066 25 LVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD-YSDCKDADLVVITAGAPQKPGETRLDLVEKNLKI 101 (315)
T ss_pred HHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC-HHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHH
Confidence 35689999999999987 79999999998632 3455543 34 5889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546 78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG 156 (295)
Q Consensus 78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~ 156 (295)
++++++.+++++|+||+|++|||+|++|+++ ++++| +|++||||+ |.||++||++++|+++|++|++|+++||||
T Consensus 102 ~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~---~k~sg-~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~viGe 177 (315)
T PRK00066 102 FKSIVGEVMASGFDGIFLVASNPVDILTYAT---WKLSG-FPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGE 177 (315)
T ss_pred HHHHHHHHHHhCCCeEEEEccCcHHHHHHHH---HHHhC-CCHHHEeecCchHHHHHHHHHHHHHhCCCcccEEEEEEec
Confidence 9999999999999999999999999999987 88998 999999999 899999999999999999999999999999
Q ss_pred CCCceeeeccccCcCCCCC----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546 157 HAGVTILPLFSQATPKSNN----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226 (295)
Q Consensus 157 hg~~~~vp~~s~~~v~~~~----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~ 226 (295)
||+ +++|+||++++++.+ +++++++++.++++++++++++ +||+++||+|.++++++++|+++.+
T Consensus 178 HG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~t~~~~a~~~~~i~~ail~~~~- 252 (315)
T PRK00066 178 HGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGATYYGIAMALARITKAILNNEN- 252 (315)
T ss_pred CCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCeehHHHHHHHHHHHHHHHcCCC-
Confidence 999 899999999997632 3445688999999999999999 5689999999999999999999864
Q ss_pred CCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546 227 VPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG 288 (295)
Q Consensus 227 ~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~ 288 (295)
.++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.++..
T Consensus 253 --~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~~~~~~ 313 (315)
T PRK00066 253 --AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKEIMDEA 313 (315)
T ss_pred --eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 588887 789999 78999999999999999999998 999999999999999999988753
No 15
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=2.4e-61 Score=438.16 Aligned_cols=273 Identities=22% Similarity=0.275 Sum_probs=239.2
Q ss_pred eEEEEeCCC----chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 022546 9 SLSLYDIAN----TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCT 83 (295)
Q Consensus 9 ei~L~D~~~----~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~ 83 (295)
.|+|+|+++ ++|+++||+|+.+ ....... ++|++++++|||+||+|+|.|+++||+|++++..|++|++++++
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~ 94 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE 94 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 589999976 7999999999972 2222222 34667899999999999999999999999999999999999999
Q ss_pred HHHhhCCC-eEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEE-EeeCCCCc
Q 022546 84 AIANYCPH-ALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVP-VIGGHAGV 160 (295)
Q Consensus 84 ~i~~~~p~-a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~-viG~hg~~ 160 (295)
.|++++|+ +++|++|||+|+||++++ ++.+| ||++ +||+ |.|||+|||++||++++++|++|+.+ ||||||+
T Consensus 95 ~i~~~a~~~~ivivvtNPvDv~t~v~~--~~~sg-~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~- 169 (313)
T TIGR01756 95 ALSEYAKPTVKVLVIGNPVNTNCLVAM--LHAPK-LSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE- 169 (313)
T ss_pred HHHhhCCCCeEEEEeCCchHHHHHHHH--HHcCC-CCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-
Confidence 99999954 889999999999999862 37788 9998 9999 99999999999999999999999655 9999999
Q ss_pred eeeeccccCcC--CCCC------CCHH-HHHHHHHHhhchhhhhhhhccCCCcchhhHH-HHHHHHHHHHHcCcCCCCce
Q 022546 161 TILPLFSQATP--KSNN------LSDE-EIKALTKRTQDGGTEVVEAKAGKGSATLSMA-YAGAVFADACLMGLNGVPDI 230 (295)
Q Consensus 161 ~~vp~~s~~~v--~~~~------~~~~-~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a-~a~~~~i~ai~~~~~~~~~v 230 (295)
+++|+||++++ ++.+ ++++ .++++.+++++++++|++ +||+|+|++| .++++++++|++|++. ..+
T Consensus 170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~~-~~i 245 (313)
T TIGR01756 170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTRP-GEV 245 (313)
T ss_pred ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCCC-CeE
Confidence 89999999999 7633 2221 368899999999999999 5689999977 6999999999997653 368
Q ss_pred eEEE-Eee-C-CC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546 231 VECT-FVQ-S-SV--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKGIQFAN 293 (295)
Q Consensus 231 ~~~~-~~~-g-~~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~ 293 (295)
+|++ +++ | +| ++|++||+||++|++|++++++ + +|+++|+++|++|+++|+++.+.+++.|.
T Consensus 246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~~~~~~~ 313 (313)
T TIGR01756 246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERETALKALA 313 (313)
T ss_pred EEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9998 565 3 88 4799999999999999999999 8 99999999999999999999999988763
No 16
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=1e-61 Score=443.33 Aligned_cols=276 Identities=25% Similarity=0.365 Sum_probs=243.7
Q ss_pred CCCCcC-----eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHH
Q 022546 3 LDPLVS-----SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71 (295)
Q Consensus 3 ~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~ 71 (295)
+.++++ ||+|+|+++ ++|+++||+|+.++ ..++++ +++ +++++|||+||+++|.++++||+|++++
T Consensus 26 ~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~daDiVVitaG~~~k~g~tR~dll 102 (326)
T PRK05442 26 SGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFKDADVALLVGARPRGPGMERKDLL 102 (326)
T ss_pred hhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhCCCCEEEEeCCCCCCCCCcHHHHH
Confidence 456677 999999954 79999999998622 244443 234 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccce
Q 022546 72 NINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVN 150 (295)
Q Consensus 72 ~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~ 150 (295)
..|++|++++++.|++|+ |++++|++|||+|+||+++ +|.+|+||++||||+|.||++|||++||++++++|++|+
T Consensus 103 ~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~ 179 (326)
T PRK05442 103 EANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA---MKNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIK 179 (326)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH---HHHcCCCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeE
Confidence 999999999999999988 8999999999999999997 899933999999999999999999999999999999999
Q ss_pred EE-EeeCCCCceeeeccccCcCCCCC----CCHHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHH-HHHHHHHHHc
Q 022546 151 VP-VIGGHAGVTILPLFSQATPKSNN----LSDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYA-GAVFADACLM 222 (295)
Q Consensus 151 ~~-viG~hg~~~~vp~~s~~~v~~~~----~~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a-~~~~i~ai~~ 222 (295)
++ ||||||+ +++|+||++++++.+ +++.+ ++++.+++++++++|++ +||+++|++|.+ +++++++|++
T Consensus 180 ~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t~~~~a~~~~~~iv~ail~ 255 (326)
T PRK05442 180 KMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE---ARGASSAASAANAAIDHVRDWVL 255 (326)
T ss_pred EeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh---CcCCccHHHHHHHHHHHHHHHHh
Confidence 86 5999999 899999999998643 23333 67899999999999999 568999999999 5999999999
Q ss_pred CcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 022546 223 GLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKGIQF 291 (295)
Q Consensus 223 ~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~ 291 (295)
|.+. ..++|++ +++|+| |++++||+||++| +|++++++ + +|+++|+++|++|++.|+++.+.+.++
T Consensus 256 ~~~~-~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l-~L~~~E~~~l~~s~~~l~~~~~~~~~~ 325 (326)
T PRK05442 256 GTPE-GDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGL-EIDDFSREKIDATLAELEEERDAVKHL 325 (326)
T ss_pred CCCC-CeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9521 2588887 679998 5899999999999 99999966 6 999999999999999999999988765
No 17
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=2.6e-61 Score=438.24 Aligned_cols=271 Identities=28% Similarity=0.403 Sum_probs=245.3
Q ss_pred CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546 1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77 (295)
Q Consensus 1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i 77 (295)
|+..++++||+|+|+++ +.|+++||+|+... ...+.+. ++| +++++|||+||+++|.|+++||+|++++.+|+++
T Consensus 17 l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i 94 (300)
T cd00300 17 LIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAPRKPGETRLDLINRNAPI 94 (300)
T ss_pred HHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHH
Confidence 34678999999999987 89999999998643 2233332 245 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546 78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG 156 (295)
Q Consensus 78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~ 156 (295)
++++++.|+++||+||+|++|||+|++|+++ ++++| +|++||||+ |.||++|+++++|+++++++++|+++|+||
T Consensus 95 ~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~---~~~sg-~~~~kviG~gt~lDs~r~~~~la~~l~v~~~~v~~~viGe 170 (300)
T cd00300 95 LRSVITNLKKYGPDAIILVVSNPVDILTYVA---QKLSG-LPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGE 170 (300)
T ss_pred HHHHHHHHHHhCCCeEEEEccChHHHHHHHH---HHHhC-cCHHHEEecCCcHHHHHHHHHHHHHhCCCcccEEEEEEec
Confidence 9999999999999999999999999999987 89999 999999999 899999999999999999999999999999
Q ss_pred CCCceeeeccccCcCCCCCC------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCce
Q 022546 157 HAGVTILPLFSQATPKSNNL------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI 230 (295)
Q Consensus 157 hg~~~~vp~~s~~~v~~~~~------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v 230 (295)
||+ +++|+||++++++.++ ++..++++.++++++++++++ +||+++||+|.++++++++|+++.+ .+
T Consensus 171 Hg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~~~~~~ai~~~~~---~v 243 (300)
T cd00300 171 HGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAIADIVKSILLDER---RV 243 (300)
T ss_pred cCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHHHHHHHHHHcCCC---eE
Confidence 998 8999999999976432 234578999999999999999 5689999999999999999999864 58
Q ss_pred eEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 022546 231 VECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI 285 (295)
Q Consensus 231 ~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~ 285 (295)
+|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus 244 ~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 244 LPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred EEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 8888 779998 78999999999999999999998 999999999999999999765
No 18
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=3.3e-61 Score=451.80 Aligned_cols=277 Identities=23% Similarity=0.282 Sum_probs=246.3
Q ss_pred CCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 022546 4 DPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVK 79 (295)
Q Consensus 4 ~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~ 79 (295)
++++.||+|+|+++ ++|++|||+|+.++ ..+++. ++| |++++|||+||+++|.|+++||+|++++..|++|++
T Consensus 130 ~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k 206 (444)
T PLN00112 130 QPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFA 206 (444)
T ss_pred CCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence 48899999999988 89999999998732 244433 234 699999999999999999999999999999999999
Q ss_pred HHHHHHHh-hCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccc-eEEEeeC
Q 022546 80 SLCTAIAN-YCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEV-NVPVIGG 156 (295)
Q Consensus 80 ~i~~~i~~-~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v-~~~viG~ 156 (295)
++++.|++ ++|++++|++|||+|+||+++ ++.+| ++++|+||+ |.||++||+++||+++|+++++| +++||||
T Consensus 207 ~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~---~k~sg-~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~Ge 282 (444)
T PLN00112 207 EQGKALNEVASRNVKVIVVGNPCNTNALIC---LKNAP-NIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGN 282 (444)
T ss_pred HHHHHHHHhcCCCeEEEEcCCcHHHHHHHH---HHHcC-CCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEec
Confidence 99999999 599999999999999999997 89999 889999999 99999999999999999999999 5699999
Q ss_pred CCCceeeeccccCcCCCCCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchh-hHHHHHHHHHHHHHcCcCCCCc
Q 022546 157 HAGVTILPLFSQATPKSNNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATL-SMAYAGAVFADACLMGLNGVPD 229 (295)
Q Consensus 157 hg~~~~vp~~s~~~v~~~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~-s~a~a~~~~i~ai~~~~~~~~~ 229 (295)
||+ ++||+||++++++.++ ++.+ ++++.++++++|++|++ +||+++| ++|.++++++++|+++.+. +.
T Consensus 283 HGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~---~kG~t~~~s~a~ai~~~I~ail~~~d~-~~ 357 (444)
T PLN00112 283 HST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK---KWGRSSAASTAVSIADAIKSLVTPTPE-GD 357 (444)
T ss_pred CCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh---ccCchhHHHHHHHHHHHHHHHHcCCCC-Ce
Confidence 999 9999999999987543 2223 68999999999999999 4576766 9999999999999955443 36
Q ss_pred eeEEE-EeeCC-C--CCccEEEEeEEEcCCceEEEc-cCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546 230 IVECT-FVQSS-V--TELPFFASKVRLGKNGADEVL-GLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293 (295)
Q Consensus 230 v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~v~-~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~ 293 (295)
++|++ +++|+ | ++|++||+||++|++|+++++ ++ +|+++|+++|++|+++|.++.+.+...++
T Consensus 358 vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~ 425 (444)
T PLN00112 358 WFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLRERIKKSEAELLAEKRCVAHLTG 425 (444)
T ss_pred EEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89998 78994 8 589999999999999999999 67 99999999999999999999998877654
No 19
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.4e-61 Score=442.51 Aligned_cols=276 Identities=28% Similarity=0.350 Sum_probs=244.5
Q ss_pred CCCCCcC-----eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHH
Q 022546 2 KLDPLVS-----SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL 70 (295)
Q Consensus 2 ~~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~ 70 (295)
.+.++++ +|+|+|+++ ++|+++||+|+.++ ..+++.. ++ +++++|||+||+++|.|+++||+|+++
T Consensus 21 ~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~--~~-~~~~~~aDiVVitAG~~~~~g~tR~dl 97 (323)
T cd00704 21 ASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITT--DP-EEAFKDVDVAILVGAFPRKPGMERADL 97 (323)
T ss_pred HhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEec--Ch-HHHhCCCCEEEEeCCCCCCcCCcHHHH
Confidence 4567888 499999975 79999999998521 2233332 33 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccc
Q 022546 71 FNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV 149 (295)
Q Consensus 71 ~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v 149 (295)
+.+|++|++++++.|++++ |++++|++|||+|+||+++ +|.+|.+|++||||+|.||++|||++||++++++|++|
T Consensus 98 l~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~vig~t~LDs~R~r~~la~~l~v~~~~V 174 (323)
T cd00704 98 LRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA---LKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDV 174 (323)
T ss_pred HHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEEeeHHHHHHHHHHHHHHhCcCHHHc
Confidence 9999999999999999996 9999999999999999987 89999459999999999999999999999999999999
Q ss_pred -eEEEeeCCCCceeeeccccCcCCCCCC--------CHH-HHHHHHHHhhchhhhhhhhccCCCcchhh-HHHHHHHHHH
Q 022546 150 -NVPVIGGHAGVTILPLFSQATPKSNNL--------SDE-EIKALTKRTQDGGTEVVEAKAGKGSATLS-MAYAGAVFAD 218 (295)
Q Consensus 150 -~~~viG~hg~~~~vp~~s~~~v~~~~~--------~~~-~~~~i~~~v~~~~~~i~~~~~~kg~~~~s-~a~a~~~~i~ 218 (295)
+++||||||+ +++|+||++++++.++ +++ ..++|.+++++++++|++ +||+++|+ +|.+++++++
T Consensus 175 ~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~---~kg~t~~~~~a~a~~~iv~ 250 (323)
T cd00704 175 KNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK---KRGASSAASAAKAIADHVK 250 (323)
T ss_pred eeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh---ccCcchhHHHHHHHHHHHH
Confidence 5699999999 8999999999976432 222 257899999999999999 45788896 6999999999
Q ss_pred HHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546 219 ACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI 289 (295)
Q Consensus 219 ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~ 289 (295)
+|++|++++ .++|++ +++|+| |++++||+||+||++||++++++ +|+++|+++|++|++.|+++.++++
T Consensus 251 ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~~ 323 (323)
T cd00704 251 DWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREKLKATEEELIEEKEIAL 323 (323)
T ss_pred HHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 999998644 589997 889987 47999999999999999999998 9999999999999999999998874
No 20
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=4.4e-61 Score=444.97 Aligned_cols=278 Identities=24% Similarity=0.279 Sum_probs=243.9
Q ss_pred CCCCCcC-----eEEEE--eCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHH
Q 022546 2 KLDPLVS-----SLSLY--DIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL 70 (295)
Q Consensus 2 ~~~~~~~-----ei~L~--D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~ 70 (295)
...++++ +|+|+ |++. ++|+++||+|+.++ ..+++.+ +| +++++|||+||+++|.|+++||+|+++
T Consensus 65 ~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~--~~-y~~~kdaDIVVitAG~prkpg~tR~dl 141 (387)
T TIGR01757 65 ASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGI--DP-YEVFEDADWALLIGAKPRGPGMERADL 141 (387)
T ss_pred HhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEec--CC-HHHhCCCCEEEECCCCCCCCCCCHHHH
Confidence 4677888 57777 6666 89999999998722 2444332 34 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCcc
Q 022546 71 FNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAE 148 (295)
Q Consensus 71 ~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~ 148 (295)
+..|++|++++++.|++++ |++++||+|||+|+||+++ ++.+| +|++|+||+ |.||++|||++||+++++++++
T Consensus 142 l~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~---~k~sg-~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~ 217 (387)
T TIGR01757 142 LDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA---MKNAP-NIPRKNFHALTRLDENRAKCQLALKSGKFYTS 217 (387)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH---HHHcC-CCcccEEEecchhHHHHHHHHHHHHHCcChhH
Confidence 9999999999999999987 9999999999999999987 89999 889999999 9999999999999999999999
Q ss_pred c-eEEEeeCCCCceeeeccccCcCCCCCCC----HHH--HHHHHHHhhchhhhhhhhccCCCcchh-hHHHHHHHHHHHH
Q 022546 149 V-NVPVIGGHAGVTILPLFSQATPKSNNLS----DEE--IKALTKRTQDGGTEVVEAKAGKGSATL-SMAYAGAVFADAC 220 (295)
Q Consensus 149 v-~~~viG~hg~~~~vp~~s~~~v~~~~~~----~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~-s~a~a~~~~i~ai 220 (295)
| +++||||||+ +++|+||++++++.++. +.+ ++++.++++++|++|++ +||++.| ++|.++++++++|
T Consensus 218 V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~---~KG~t~~~s~a~ai~~~i~ai 293 (387)
T TIGR01757 218 VSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK---KWGRSSAASTAVSIADAIKSL 293 (387)
T ss_pred cceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh---ccCchhHHHHHHHHHHHHHHH
Confidence 9 5999999999 89999999999774332 222 68999999999999999 4566666 9999999999999
Q ss_pred HcCcCCCCceeEEE-EeeCC-C--CCccEEEEeEEEcCCceEEEc-cCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022546 221 LMGLNGVPDIVECT-FVQSS-V--TELPFFASKVRLGKNGADEVL-GLGPLSDYEKQGLESLKPELKASIEKGIQFA 292 (295)
Q Consensus 221 ~~~~~~~~~v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~v~-~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~ 292 (295)
++|.+. ..++|++ +++|+ | +++++||+||++|++|+++++ ++ +|+++|+++|++|++.|+++.+.+++.+
T Consensus 294 ~~g~d~-~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~~~l~~Sa~~L~~e~~~~~~~~ 368 (387)
T TIGR01757 294 VVPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLRERIRKSEDELLKEKECVAHLI 368 (387)
T ss_pred hcCCCC-CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 955443 3588887 77996 8 589999999999999999997 87 9999999999999999999999988754
No 21
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=8.7e-61 Score=436.39 Aligned_cols=270 Identities=28% Similarity=0.408 Sum_probs=243.5
Q ss_pred CCCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546 2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77 (295)
Q Consensus 2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i 77 (295)
+.+++.++|+|+|+++ ++++++||+|+.. ...+.... .+ ++++++||+||+++|.|+++||+|++++.+|+++
T Consensus 20 ~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~-~~~l~~aDIVIitag~~~~~g~~R~dll~~N~~i 96 (306)
T cd05291 20 VNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GD-YSDCKDADIVVITAGAPQKPGETRLDLLEKNAKI 96 (306)
T ss_pred HhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CC-HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHH
Confidence 4578889999999987 7999999999853 22333332 34 5789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546 78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG 156 (295)
Q Consensus 78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~ 156 (295)
++++++.|++++|+|++|++|||+|+||+++ ++++| ||++||||+ |.||++||++++|+++++++++|+++|||+
T Consensus 97 ~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~---~~~~g-~p~~~v~g~gt~LDs~R~~~~la~~l~v~~~~v~~~V~G~ 172 (306)
T cd05291 97 MKSIVPKIKASGFDGIFLVASNPVDVITYVV---QKLSG-LPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGE 172 (306)
T ss_pred HHHHHHHHHHhCCCeEEEEecChHHHHHHHH---HHHhC-cCHHHEeeccchHHHHHHHHHHHHHHCCCcccceEEEEec
Confidence 9999999999999999999999999999987 78888 999999999 899999999999999999999999999999
Q ss_pred CCCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCC
Q 022546 157 HAGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV 227 (295)
Q Consensus 157 hg~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~ 227 (295)
||+ +++|+||++++++.+ +.+++++++.++++++|++|++ +||+++|++|.++++++++|+++.+
T Consensus 173 Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~~~a~a~~~~~~ail~~~~-- 246 (306)
T cd05291 173 HGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYYGIATALARIVKAILNDEN-- 246 (306)
T ss_pred CCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHHHHHHHHHHHHHHHHcCCC--
Confidence 999 899999999987632 2244588999999999999999 5689999999999999999999854
Q ss_pred CceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546 228 PDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286 (295)
Q Consensus 228 ~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~ 286 (295)
.++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.++
T Consensus 247 -~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~~ 305 (306)
T cd05291 247 -AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENIK 305 (306)
T ss_pred -EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHhh
Confidence 588887 789999 78999999999999999999998 9999999999999999998764
No 22
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.7e-60 Score=408.52 Aligned_cols=293 Identities=70% Similarity=1.077 Sum_probs=278.9
Q ss_pred CCCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHH
Q 022546 1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS 80 (295)
Q Consensus 1 l~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~ 80 (295)
||++|++++|.|||+..+.|.+.||+|+..+..+.++.+.+++++++++||+|||.+|+||||||+|+|++..|+-|+++
T Consensus 48 lK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~ 127 (345)
T KOG1494|consen 48 LKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKT 127 (345)
T ss_pred HhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHH
Confidence 68999999999999988999999999999888999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCC-ccceEEEeeCCCC
Q 022546 81 LCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPV-AEVNVPVIGGHAG 159 (295)
Q Consensus 81 i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~-~~v~~~viG~hg~ 159 (295)
++..+.++||+|.+.++|||+|...+++++++|+.|.|+++|+||+|.||..|+++++++.++++| ++++++|+|+|.+
T Consensus 128 l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG 207 (345)
T KOG1494|consen 128 LAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAG 207 (345)
T ss_pred HHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 5599999999999
Q ss_pred ceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCC
Q 022546 160 VTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSS 239 (295)
Q Consensus 160 ~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~ 239 (295)
.|++|++|+.++.. .++++++++++.+++.+|.|+++.|.|+|++.+|+|+|.+++..+++.+.+++..+.-|+|+.+.
T Consensus 208 ~TIlPLlSQ~~p~~-~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~ 286 (345)
T KOG1494|consen 208 ITIIPLLSQCKPPF-RFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASP 286 (345)
T ss_pred ceEeeecccCCCcc-cCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEecc
Confidence 99999999998754 37888999999999999999999999999999999999999999999999987778889988776
Q ss_pred CCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546 240 VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294 (295)
Q Consensus 240 ~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~ 294 (295)
..+-.||+.|+++|++|++++..+++||++|++.|+.+..+|++.|+++++|++.
T Consensus 287 ~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KGv~F~~~ 341 (345)
T KOG1494|consen 287 VTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKGVTFVKS 341 (345)
T ss_pred ccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 4467799999999999999999999999999999999999999999999999864
No 23
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.5e-59 Score=429.00 Aligned_cols=276 Identities=25% Similarity=0.339 Sum_probs=245.3
Q ss_pred CCCCCcC-----eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHH
Q 022546 2 KLDPLVS-----SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL 70 (295)
Q Consensus 2 ~~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~ 70 (295)
.+.++++ ||+|+|+++ ++|+++||+|+.++ ..+++. ++| +++++|||+||+++|.++++||+|+++
T Consensus 23 ~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivvitaG~~~k~g~tR~dl 99 (322)
T cd01338 23 ASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFKDADWALLVGAKPRGPGMERADL 99 (322)
T ss_pred HhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhCCCCEEEEeCCCCCCCCCcHHHH
Confidence 3567888 999999954 79999999998732 245543 234 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccc
Q 022546 71 FNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV 149 (295)
Q Consensus 71 ~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v 149 (295)
+..|++|++++++.|++++ |++++|++|||+|+||+++ +|.+|.||++||+|+|.||++||++.+|+++|+++++|
T Consensus 100 l~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v 176 (322)
T cd01338 100 LKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA---MKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDV 176 (322)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH---HHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHe
Confidence 9999999999999999999 5999999999999999987 79995599999999999999999999999999999999
Q ss_pred eE-EEeeCCCCceeeeccccCcCCCCCC----CHH--HHHHHHHHhhchhhhhhhhccCCCcchhhHH-HHHHHHHHHHH
Q 022546 150 NV-PVIGGHAGVTILPLFSQATPKSNNL----SDE--EIKALTKRTQDGGTEVVEAKAGKGSATLSMA-YAGAVFADACL 221 (295)
Q Consensus 150 ~~-~viG~hg~~~~vp~~s~~~v~~~~~----~~~--~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a-~a~~~~i~ai~ 221 (295)
++ +|||+||+ +++|+||++++++.++ .+. .++++.+++++++++|++ +||+++|++| .++++++++|+
T Consensus 177 ~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t~~~~~a~a~~~iv~ail 252 (322)
T cd01338 177 KNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK---ARGASSAASAANAAIDHMRDWV 252 (322)
T ss_pred EEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh---CcCCccHHHHHHHHHHHHHHHh
Confidence 98 56999998 9999999999876433 343 367999999999999999 5689999999 59999999999
Q ss_pred cCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546 222 MGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI 289 (295)
Q Consensus 222 ~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~ 289 (295)
+|++. ..++|++ +++|+| |++++||+||++|++||++++++ +|+++|+++|++|++.|+++.++..
T Consensus 253 ~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~l~~~~~~~~ 321 (322)
T cd01338 253 LGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKIDATLAELLEEREAVK 321 (322)
T ss_pred cCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99852 2588887 779998 58999999999999999999998 9999999999999999999987653
No 24
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=7.7e-59 Score=425.06 Aligned_cols=276 Identities=30% Similarity=0.491 Sum_probs=246.6
Q ss_pred CCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546 3 LDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV 78 (295)
Q Consensus 3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~ 78 (295)
..++ .+|+|+|+++ ++|+++|++|+.. ....+.. +++|+ ++++|||+||+++|.++++|++|.+++..|++++
T Consensus 26 ~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~ 102 (319)
T PTZ00117 26 QKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVVITAGVQRKEEMTREDLLTINGKIM 102 (319)
T ss_pred HCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
Confidence 4455 7899999987 7899999999853 1123332 33565 6999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546 79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH 157 (295)
Q Consensus 79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h 157 (295)
+++++.|+++||++|+|++|||+|++++++ ++.++ +|++||||+ |.||++||+++||+++|++|++|+++|+|||
T Consensus 103 ~~i~~~i~~~~p~a~vivvsNP~di~t~~~---~~~s~-~p~~rviG~gt~lds~R~~~~la~~l~v~~~~v~~~viGeH 178 (319)
T PTZ00117 103 KSVAESVKKYCPNAFVICVTNPLDCMVKVF---QEKSG-IPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH 178 (319)
T ss_pred HHHHHHHHHHCCCeEEEEecChHHHHHHHH---HHhhC-CCcccEEEecchHHHHHHHHHHHHHhCCCcccceEEEeecC
Confidence 999999999999999999999999999886 78888 999999999 5999999999999999999999999999999
Q ss_pred CCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546 158 AGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP 228 (295)
Q Consensus 158 g~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~ 228 (295)
|+ +++|+||++++++.+ +++++++++.++++++++++++.+ |||+++||+|.++++++++|++|.+
T Consensus 179 g~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t~~~~a~a~~~~~~ail~~~~--- 253 (319)
T PTZ00117 179 GD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSAFFAPAAAIVAMIEAYLKDEK--- 253 (319)
T ss_pred CC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHhcCCC---
Confidence 98 899999999987632 445568899999999999999976 7899999999999999999999864
Q ss_pred ceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 022546 229 DIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291 (295)
Q Consensus 229 ~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~ 291 (295)
.++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++...+
T Consensus 254 ~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~~~~~~~~~ 317 (319)
T PTZ00117 254 RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQELTQKAKAL 317 (319)
T ss_pred eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588998 789998 46899999999999999999998 999999999999999999998876544
No 25
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=8e-59 Score=422.24 Aligned_cols=269 Identities=30% Similarity=0.513 Sum_probs=242.7
Q ss_pred CCCCcCeEEEEeCCC--chhHHHhhhCCCC----CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546 3 LDPLVSSLSLYDIAN--TPGVAADVSHINS----PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG 76 (295)
Q Consensus 3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~----~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~ 76 (295)
+++.. +++|+|+++ +.|.++|+.|... ..+++. ++|+ +++++||+||+++|.|+++|++|++++..|.+
T Consensus 22 ~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIitag~p~~~~~sR~~l~~~N~~ 96 (305)
T TIGR01763 22 EKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVITAGLPRKPGMSREDLLSMNAG 96 (305)
T ss_pred HcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEEcCCCCCCcCCCHHHHHHHHHH
Confidence 45666 799999987 6788999988642 124442 3565 56999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546 77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIG 155 (295)
Q Consensus 77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG 155 (295)
+++++++.|++++|++++|++|||+|+||+++ +|++| +|++||||+ |.|||+||++++|++|++++++|+++|||
T Consensus 97 iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~---~~~sg-~~~~rviG~g~~lds~R~~~~la~~l~v~~~~v~~~v~G 172 (305)
T TIGR01763 97 IVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA---WQKSG-FPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLG 172 (305)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHEEEeccchHHHHHHHHHHHHhCcCHHHeeeeEEe
Confidence 99999999999999999999999999999987 89999 999999999 69999999999999999999999999999
Q ss_pred CCCCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCcee
Q 022546 156 GHAGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIV 231 (295)
Q Consensus 156 ~hg~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~ 231 (295)
|||+ +++|+||++++++.+ ++++.++++.++++++|++|++.+ |||+++|++|.++++++++|++|++ .++
T Consensus 173 eHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~~~~~i~~ai~~~~~---~v~ 247 (305)
T TIGR01763 173 GHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPAASVVEMVEAILKDRK---RVL 247 (305)
T ss_pred cCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhCCCC---eEE
Confidence 9999 899999999997743 344558999999999999999975 7899999999999999999999874 588
Q ss_pred EEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546 232 ECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286 (295)
Q Consensus 232 ~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~ 286 (295)
|++ +++|+| .+++|+|+||++|++||++++++ +|+++|+++|++|++.|++.++
T Consensus 248 ~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~ 303 (305)
T TIGR01763 248 PCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCK 303 (305)
T ss_pred EEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 887 779998 68999999999999999999998 9999999999999999998765
No 26
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=1.5e-58 Score=422.71 Aligned_cols=277 Identities=25% Similarity=0.291 Sum_probs=237.9
Q ss_pred CCCCcC-----eEEEEeCCC----chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHH
Q 022546 3 LDPLVS-----SLSLYDIAN----TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNI 73 (295)
Q Consensus 3 ~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~ 73 (295)
+.++++ +|+|+|+++ ++|+++||+|+.....-.. ..+++.+++++|||+||+++|.|+++|++|.+++..
T Consensus 21 ~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~-~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~ 99 (324)
T TIGR01758 21 RGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGV-VPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSK 99 (324)
T ss_pred hccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCce-eccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHH
Confidence 456665 799999954 7899999999973211111 222244699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccce-
Q 022546 74 NAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVN- 150 (295)
Q Consensus 74 n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~- 150 (295)
|++|++++++.|++++ |++++|++|||+|+||+++ ++.+| ++++++||+ |.|||+|||++||++++++|++|+
T Consensus 100 N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~~~sg-~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~ 175 (324)
T TIGR01758 100 NVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL---SNYAP-SIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKN 175 (324)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCcceEEEeeehHHHHHHHHHHHHhCCChhhceE
Confidence 9999999999999996 9999999999999999987 89998 666679999 999999999999999999999995
Q ss_pred EEEeeCCCCceeeeccccCcCC-C---CCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHH
Q 022546 151 VPVIGGHAGVTILPLFSQATPK-S---NNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADAC 220 (295)
Q Consensus 151 ~~viG~hg~~~~vp~~s~~~v~-~---~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai 220 (295)
++||||||+ +++|+||+++++ + .++ ++.+ ++++.+++++++++|++.+ +|++.|++|.++++++++|
T Consensus 176 ~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k--~~~t~~~ia~~~~~i~~ai 252 (324)
T TIGR01758 176 VIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR--KLSSALSAAKAAVDQMHDW 252 (324)
T ss_pred eEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc--CCCHHHHHHHHHHHHHHHH
Confidence 699999999 999999999998 6 333 2222 5789999999999999963 3589999999999999999
Q ss_pred HcCcCCCCceeEEE-EeeCC-C--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546 221 LMGLNGVPDIVECT-FVQSS-V--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI 289 (295)
Q Consensus 221 ~~~~~~~~~v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~ 289 (295)
+++.+. +.++|++ +.+|+ | |++++||+||++|++|++.+.++ +|+++|+++|++|++.|++.+++++
T Consensus 253 ~~~~~~-~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~s~~~lk~~~~~~~ 323 (324)
T TIGR01758 253 VLGTPE-GTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLALTAKELEEERDEAL 323 (324)
T ss_pred hcCCCC-CeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 954432 3689998 77999 8 48999999999997777776667 9999999999999999999998875
No 27
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=7.6e-58 Score=418.13 Aligned_cols=271 Identities=31% Similarity=0.541 Sum_probs=243.0
Q ss_pred CCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCC-----CHHHHHHH
Q 022546 3 LDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM-----TRDDLFNI 73 (295)
Q Consensus 3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~-----~r~~~~~~ 73 (295)
..++ .+|+|+|+++ +.+.++|+.|... ....++. .++|+ ++++|||+||+++|.++++|+ +|++++..
T Consensus 27 ~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~ 103 (321)
T PTZ00082 27 LKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPL 103 (321)
T ss_pred hCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHH
Confidence 4555 5599999988 7889999999742 2223333 23565 799999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEE
Q 022546 74 NAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVP 152 (295)
Q Consensus 74 n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~ 152 (295)
|+++++++++.|++++|+||+|++|||+|++++.+ ++.+| +|++||||+ |.||++|+++++|+++++++++|+++
T Consensus 104 n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~---~~~sg-~p~~rviGlgt~lds~R~~~~la~~l~v~~~~v~~~ 179 (321)
T PTZ00082 104 NAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL---QEHSG-LPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHAS 179 (321)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHhcC-CChhhEEEecCcccHHHHHHHHHHHhCCCcccceee
Confidence 99999999999999999999999999999999886 78888 999999999 69999999999999999999999999
Q ss_pred EeeCCCCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcC
Q 022546 153 VIGGHAGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMG 223 (295)
Q Consensus 153 viG~hg~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~ 223 (295)
|+||||+ +++|+||++++++.+ +++++++++.++++++|++|++.+ |||+|+||+|.++++++++|++|
T Consensus 180 viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-gkg~t~~~ia~a~~~i~~ail~d 257 (321)
T PTZ00082 180 VIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-GTGSAYFAPAAAAIEMAEAYLKD 257 (321)
T ss_pred EEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHHHcC
Confidence 9999999 899999999997632 345568899999999999999975 78999999999999999999998
Q ss_pred cCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546 224 LNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286 (295)
Q Consensus 224 ~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~ 286 (295)
++ .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.++
T Consensus 258 ~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~sa~~i~~~~~ 318 (321)
T PTZ00082 258 KK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESIKEVKRLEA 318 (321)
T ss_pred CC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 65 588998 789998 67999999999999999999998 9999999999999999998765
No 28
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.8e-58 Score=418.26 Aligned_cols=270 Identities=28% Similarity=0.421 Sum_probs=243.9
Q ss_pred CCCCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546 2 KLDPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV 78 (295)
Q Consensus 2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~ 78 (295)
..++++++++|+|+++ +.++++|++|+... .....++ +| +++++|||+||++++.++++|++|++++.+|++++
T Consensus 20 ~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~--~d-~~~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~ 96 (308)
T cd05292 20 LLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA--GD-YADCKGADVVVITAGANQKPGETRLDLLKRNVAIF 96 (308)
T ss_pred HHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee--CC-HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHH
Confidence 4578899999999987 78999999998521 2234332 45 48899999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546 79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH 157 (295)
Q Consensus 79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h 157 (295)
+++++.|++++|+|+++++|||+|+|++++ ++.+| ||++||||+ |.||++|+++++|+++++++++|+++|||||
T Consensus 97 ~~~~~~l~~~~~~giiiv~tNP~d~~~~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~la~~~~v~~~~v~~~viGeH 172 (308)
T cd05292 97 KEIIPQILKYAPDAILLVVTNPVDVLTYVA---YKLSG-LPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGEH 172 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHeecccchhhHHHHHHHHHHHhCCCccceeceeeccC
Confidence 999999999999999999999999999987 89998 999999999 9999999999999999999999999999999
Q ss_pred CCceeeeccccCcCCCCC-----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546 158 AGVTILPLFSQATPKSNN-----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226 (295)
Q Consensus 158 g~~~~vp~~s~~~v~~~~-----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~ 226 (295)
|+ +++|+||++++++.+ +++++++++.+++++++++|++ +||+++|++|.++++++++|++|.+
T Consensus 173 g~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~~~~a~a~~~i~~ail~~~~- 247 (308)
T cd05292 173 GD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATYYAIGLALARIVEAILRDEN- 247 (308)
T ss_pred CC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHHHHHHHHHHHHcCCC-
Confidence 98 899999999987632 2234588999999999999999 5689999999999999999999864
Q ss_pred CCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546 227 VPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286 (295)
Q Consensus 227 ~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~ 286 (295)
.++|++ +++|+| .+++|||+||+||++|+++++++ +||++|+++|++|++.|++.++
T Consensus 248 --~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~~~ 306 (308)
T cd05292 248 --SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEAIE 306 (308)
T ss_pred --cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 588887 779998 57999999999999999999998 9999999999999999998776
No 29
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.3e-57 Score=414.58 Aligned_cols=276 Identities=27% Similarity=0.365 Sum_probs=241.4
Q ss_pred CCCCCcC-----eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHH
Q 022546 2 KLDPLVS-----SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL 70 (295)
Q Consensus 2 ~~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~ 70 (295)
..+++++ ||+|+|+++ +.|+++|+.|+.++ .+++. +.+++++++|||+||+++|.+++++++|.++
T Consensus 23 ~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l 99 (325)
T cd01336 23 AKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFKDVDVAILVGAMPRKEGMERKDL 99 (325)
T ss_pred HhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhCCCCEEEEeCCcCCCCCCCHHHH
Confidence 3456664 999999954 68999999998622 23332 2466799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCcc
Q 022546 71 FNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAE 148 (295)
Q Consensus 71 ~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~ 148 (295)
+..|++|++++++.|++++ |++++|++|||+|+||+++ ++.++.+|+++ ||+ |.||++||++++|+++++++++
T Consensus 100 ~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~~~~~~~~~-ig~gt~LDs~R~r~~la~~l~v~~~~ 175 (325)
T cd01336 100 LKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL---LKYAPSIPKEN-FTALTRLDHNRAKSQIALKLGVPVSD 175 (325)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH---HHHcCCCCHHH-EEeeehHHHHHHHHHHHHHhCcChhh
Confidence 9999999999999999997 8999999999999999987 78865488877 888 9999999999999999999999
Q ss_pred ce-EEEeeCCCCceeeeccccCcCC----CCCCC----HHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHH
Q 022546 149 VN-VPVIGGHAGVTILPLFSQATPK----SNNLS----DEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFA 217 (295)
Q Consensus 149 v~-~~viG~hg~~~~vp~~s~~~v~----~~~~~----~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i 217 (295)
|+ .+||||||+ +++|+||+++++ +.++. +++ ++++.+++++++++|++.+ +|+++||+|.++++++
T Consensus 176 v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~--~g~t~~~~a~~~~~i~ 252 (325)
T cd01336 176 VKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKAR--KLSSAMSAAKAICDHV 252 (325)
T ss_pred ceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHcc--ccchHHHHHHHHHHHH
Confidence 96 569999999 999999999997 64432 222 5899999999999999963 5799999999999999
Q ss_pred HHHHcCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546 218 DACLMGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI 289 (295)
Q Consensus 218 ~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~ 289 (295)
++|++|.+. +.++|++ +++|+| ++++|||+||++|++||++++++ +|+++|+++|++|++.|+++++.++
T Consensus 253 ~ail~~~~~-~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~l~~e~~~~~ 325 (325)
T cd01336 253 HDWWFGTPE-GEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSREKIDATAKELVEEKETAL 325 (325)
T ss_pred HHHHcCCCC-CeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 999998532 3588987 779998 48999999999999999999998 9999999999999999999998764
No 30
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6.4e-57 Score=422.62 Aligned_cols=266 Identities=19% Similarity=0.170 Sum_probs=234.1
Q ss_pred eEEEEeCC--C--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 022546 9 SLSLYDIA--N--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLC 82 (295)
Q Consensus 9 ei~L~D~~--~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~ 82 (295)
.|+|+|++ . ++|++|||+|++++ ..+.+++ ++ +++|+|||+||+++|.|+++||+|.+++..|++|+++++
T Consensus 156 ~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~--~~-~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g 232 (452)
T cd05295 156 SIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT--DL-DVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYG 232 (452)
T ss_pred EEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE--CC-HHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 59999994 4 89999999999732 2345443 33 799999999999999999999999999999999999999
Q ss_pred HHHHhhCC--CeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccc-eEEEeeCCCC
Q 022546 83 TAIANYCP--HALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAG 159 (295)
Q Consensus 83 ~~i~~~~p--~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~ 159 (295)
+.|++++| ++++|++|||+|++|+++ +++++++|++||||++.||++||+++||+++|+++++| +++||||||+
T Consensus 233 ~~I~~~a~~~~~VlVv~tNPvD~~t~i~---~k~apgiP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~ 309 (452)
T cd05295 233 PLIEKNAKEDVKVIVAGRTFLNLKTSIL---IKYAPSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG 309 (452)
T ss_pred HHHHHhCCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC
Confidence 99999999 999999999999999987 89993399999999976889999999999999999999 6799999999
Q ss_pred ceeeeccccCcCCC------------CCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHH
Q 022546 160 VTILPLFSQATPKS------------NNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 221 (295)
Q Consensus 160 ~~~vp~~s~~~v~~------------~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~ 221 (295)
++||+||++++++ .++ .+++ .+++.+.++++++ . +||+++||+|.|+++++++|+
T Consensus 310 -sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail 382 (452)
T cd05295 310 -NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLSS---S---LNHEAAISPAHAIATTLSYWY 382 (452)
T ss_pred -ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHHHHHHH---h---ccCChHHHHHHHHHHHHHHHH
Confidence 9999999999965 222 2223 3567888888887 2 578999999999999999999
Q ss_pred cCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546 222 MGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI 289 (295)
Q Consensus 222 ~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~ 289 (295)
+|++.+ .++|++ +++|+| |+|++||+||++|++|++.+.++ +|+++|+++|+.|+++|.++.+.++
T Consensus 383 ~~t~~~-~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L-~L~e~E~~kL~~S~~eL~~E~~~~~ 451 (452)
T cd05295 383 HGSPPG-EIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDL-ELSEILREVLKRITSDLIQEKLVAL 451 (452)
T ss_pred hCCCCC-eEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 998532 588887 789998 68999999999999999999998 9999999999999999999987764
No 31
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.5e-55 Score=400.98 Aligned_cols=270 Identities=34% Similarity=0.568 Sum_probs=241.7
Q ss_pred CCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546 3 LDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV 78 (295)
Q Consensus 3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~ 78 (295)
++++. +|+|+|+++ +.++++|+.|... ....+.. .++| +++++|||+||+++|.|+++|++|.+++..|++++
T Consensus 19 ~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d-~~~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~ 95 (300)
T cd01339 19 LKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTND-YEDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIV 95 (300)
T ss_pred hCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCC-HHHhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHH
Confidence 45667 999999987 6788999998642 1222332 2345 47899999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546 79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH 157 (295)
Q Consensus 79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h 157 (295)
+++++.|++++|++++|++|||+|++|+++ ++++| +|++||||+ |.||++||++++|++|++++++|+++|+|+|
T Consensus 96 ~~i~~~i~~~~p~~~iIv~sNP~di~t~~~---~~~s~-~~~~rviGlgt~lds~r~~~~la~~l~v~~~~v~~~v~G~h 171 (300)
T cd01339 96 KEVAENIKKYAPNAIVIVVTNPLDVMTYVA---YKASG-FPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGGH 171 (300)
T ss_pred HHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCHHHEEEecchHHHHHHHHHHHHHhCCCccceEEEEEeCC
Confidence 999999999999999999999999999987 78898 999999999 5999999999999999999999999999999
Q ss_pred CCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEE
Q 022546 158 AGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC 233 (295)
Q Consensus 158 g~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~ 233 (295)
|+ +++|+||++++++.+ +++++++++.++++++++++++.| |||+++|++|.++++++++|+.|++ .++|+
T Consensus 172 g~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~~i~~ail~~~~---~i~~~ 246 (300)
T cd01339 172 GD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIAEMVEAILKDKK---RVLPC 246 (300)
T ss_pred CC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHcCCC---cEEEE
Confidence 99 899999999997643 344568999999999999999976 7799999999999999999999864 58898
Q ss_pred E-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 022546 234 T-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI 285 (295)
Q Consensus 234 ~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~ 285 (295)
+ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus 247 s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 247 SAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred EEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 8 789998 56999999999999999999998 999999999999999999765
No 32
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=2e-55 Score=400.85 Aligned_cols=271 Identities=27% Similarity=0.434 Sum_probs=240.4
Q ss_pred CCCCCcCeEEEEeCCC----chhHHHhhhCCC--CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 022546 2 KLDPLVSSLSLYDIAN----TPGVAADVSHIN--SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINA 75 (295)
Q Consensus 2 ~~~~~~~ei~L~D~~~----~~~~~~Dl~~~~--~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~ 75 (295)
...|..++|+|+|+++ +.+.++|++|+. .+...+.+ .+.| ++++++||+||+++|.|+++|++|.+++..|+
T Consensus 21 ~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d-~~~l~~aDiViitag~p~~~~~~r~dl~~~n~ 98 (309)
T cd05294 21 AKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSD-LSDVAGSDIVIITAGVPRKEGMSRLDLAKKNA 98 (309)
T ss_pred HhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCC-HHHhCCCCEEEEecCCCCCCCCCHHHHHHHHH
Confidence 3568889999999953 689999999873 22223332 2345 57899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEe
Q 022546 76 GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVI 154 (295)
Q Consensus 76 ~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~vi 154 (295)
++++++++.|++++|++++|+++||+|++|+++ ++.+| +|++||||+ |.||++|++++||+++++++++|+++|+
T Consensus 99 ~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~---~~~~g-~~~~~viG~gt~LDs~R~~~~la~~l~v~~~~v~~~vi 174 (309)
T cd05294 99 KIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRII 174 (309)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---HHhcC-CCHHHEeeccchHHHHHHHHHHHHHHCcChHHeEEEEE
Confidence 999999999999999999999999999999887 89999 999999999 7999999999999999999999999999
Q ss_pred eCCCCceeeeccccCcCCCCCC------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546 155 GGHAGVTILPLFSQATPKSNNL------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP 228 (295)
Q Consensus 155 G~hg~~~~vp~~s~~~v~~~~~------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~ 228 (295)
||||+ +++|+||++++++.++ .+.+++++.++++++|++|++. ||++.||+|.++++++++|++|++
T Consensus 175 GeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~---kg~t~~~~a~~~~~ii~ail~~~~--- 247 (309)
T cd05294 175 GEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL---KGGSEYGPASAISNLVRTIANDER--- 247 (309)
T ss_pred ecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHh---cCCchhhHHHHHHHHHHHHHCCCC---
Confidence 99999 8999999999976432 2445789999999999999994 577899999999999999999975
Q ss_pred ceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546 229 DIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286 (295)
Q Consensus 229 ~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~ 286 (295)
.+++++ +++|+| .+++++|+||++|++|+++++++ +|+++|+++|++|++.|++.++
T Consensus 248 ~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~~ 307 (309)
T cd05294 248 RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYTR 307 (309)
T ss_pred eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 588887 778886 34899999999999999999998 9999999999999999998664
No 33
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=4.4e-54 Score=392.78 Aligned_cols=272 Identities=34% Similarity=0.583 Sum_probs=242.3
Q ss_pred CCCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546 3 LDPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV 78 (295)
Q Consensus 3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~ 78 (295)
+.++. ||+|+|+++ +.|.++|+.|.... ...+.. .++|+ ++++|||+||+++|.|+++|++|.+++.+|++++
T Consensus 23 ~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~ 99 (307)
T PRK06223 23 LKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIM 99 (307)
T ss_pred hCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 45666 999999987 78999999987421 122332 23565 7899999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546 79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH 157 (295)
Q Consensus 79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h 157 (295)
+++++.|++++|++++|++|||+|++|+++ ++++| +|++||||+ |.||++||+++||++++++|++|+++|+|+|
T Consensus 100 ~~i~~~i~~~~~~~~viv~tNP~d~~~~~~---~~~s~-~~~~~viG~gt~lds~r~~~~la~~l~v~~~~v~~~viGeh 175 (307)
T PRK06223 100 KDVAEGIKKYAPDAIVIVVTNPVDAMTYVA---LKESG-FPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGGH 175 (307)
T ss_pred HHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCcccEEEeCCCcHHHHHHHHHHHHhCcChhhCcccEEcCC
Confidence 999999999999999999999999999987 78898 999999999 6999999999999999999999999999999
Q ss_pred CCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEE
Q 022546 158 AGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC 233 (295)
Q Consensus 158 g~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~ 233 (295)
|+ +++|+||++++++.+ ++++.++++.++++++++++++.+ +||++.|++|.++++++++|+.|.+ .++++
T Consensus 176 g~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~~~~~ii~ail~~~~---~~~~~ 250 (307)
T PRK06223 176 GD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAASIAEMVEAILKDKK---RVLPC 250 (307)
T ss_pred CC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHHHHHHHHHHHHcCCC---cEEEE
Confidence 99 899999999987533 445557899999999999999964 6789999999999999999999864 57888
Q ss_pred E-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022546 234 T-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287 (295)
Q Consensus 234 ~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~ 287 (295)
+ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus 251 ~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~ 305 (307)
T PRK06223 251 SAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEA 305 (307)
T ss_pred EEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 7 789988 68999999999999999999998 99999999999999999988764
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=1.5e-50 Score=361.72 Aligned_cols=235 Identities=31% Similarity=0.456 Sum_probs=212.6
Q ss_pred CCC--CcCeEEEEeCCC--chhHHHhhhCCCCCC-eEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546 3 LDP--LVSSLSLYDIAN--TPGVAADVSHINSPA-QVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77 (295)
Q Consensus 3 ~~~--~~~ei~L~D~~~--~~~~~~Dl~~~~~~~-~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i 77 (295)
+.+ ...||+|+|+++ +++.++|++|+.... ..+.. .++|++++++|||+||+++|.++++|++|.+++.+|+++
T Consensus 20 ~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i 98 (263)
T cd00650 20 DGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPI 98 (263)
T ss_pred hCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHH
Confidence 456 789999999987 789999999986432 23333 356788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546 78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH 157 (295)
Q Consensus 78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~h 157 (295)
++++++.|+++||+||+|++|||+|++|+++ +|++| +|++|+||+|.+|++|+++++|+++++++++|+++|||+|
T Consensus 99 ~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~---~~~sg-~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G~h 174 (263)
T cd00650 99 VKEIGDNIEKYSPDAWIIVVSNPVDIITYLV---WRYSG-LPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEH 174 (263)
T ss_pred HHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCchhEEEeecchHHHHHHHHHHHhCCCccceEEEEEEcC
Confidence 9999999999999999999999999999987 89998 9999999994499999999999999999999999999999
Q ss_pred CCceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-Ee
Q 022546 158 AGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FV 236 (295)
Q Consensus 158 g~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~ 236 (295)
|+ +++|+||+++ +|.++++++++|++|++ .+++++ ++
T Consensus 175 g~-~~~~~~s~~~--------------------------------------~a~~~~~ii~ai~~~~~---~~~~v~v~~ 212 (263)
T cd00650 175 GG-SQVPDWSTVR--------------------------------------IATSIADLIRSLLNDEG---EILPVGVRN 212 (263)
T ss_pred CC-ceEeccccch--------------------------------------HHHHHHHHHHHHHcCCC---EEEEEEEEe
Confidence 99 8999999864 67899999999999853 578887 77
Q ss_pred eCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 022546 237 QSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI 285 (295)
Q Consensus 237 ~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~ 285 (295)
+|+| +++++||+||++|++|+++++++ +|+++|+++|+.|++.++..+
T Consensus 213 ~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 213 NGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred CCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 9998 58999999999999999998997 999999999999999999764
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.1e-48 Score=331.05 Aligned_cols=277 Identities=28% Similarity=0.374 Sum_probs=249.9
Q ss_pred eEEEEeCCC----chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022546 9 SLSLYDIAN----TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTA 84 (295)
Q Consensus 9 ei~L~D~~~----~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~ 84 (295)
.|+|+|+.+ .+|..|+|+||+++ .++....++|..++|+|.|+.|+.++.||++||+|.|++..|++|++..+..
T Consensus 37 iL~lLdi~~~~~~LegV~mELqD~a~P-lL~~Vvattd~~~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~A 115 (332)
T KOG1496|consen 37 ILHLLDIPPMMSVLEGVKMELQDCALP-LLKGVVATTDEVEAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAA 115 (332)
T ss_pred EEEeeCCchHHHHHHHHHHHHHhhhhh-HHHhhhcccChhhhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHH
Confidence 589999987 68999999999864 5555555678899999999999999999999999999999999999999999
Q ss_pred HHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccc-eEEEeeCCCCcee
Q 022546 85 IANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTI 162 (295)
Q Consensus 85 i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~ 162 (295)
+.+|+ |+.+|+|++||+|..+.++ .+++.++|.++|-.+|.||++|+..+||.++||+.++| ++++||+|+. ++
T Consensus 116 L~k~A~~~~KVlVVgNPaNTNali~---~k~ApsIP~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQ 191 (332)
T KOG1496|consen 116 LEKYAKPNVKVLVVGNPANTNALIL---KKFAPSIPEKNFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQ 191 (332)
T ss_pred HHHhcCCCceEEEecCccccchhHH---hhhCCCCchhcchhhhhhchhhHHHHHHHhhCCchhhcceeEEeccccc-cc
Confidence 99998 9999999999999999887 79999999999999999999999999999999999999 7999999998 99
Q ss_pred eeccccCcCCCC--------CCCHHHH--HHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeE
Q 022546 163 LPLFSQATPKSN--------NLSDEEI--KALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVE 232 (295)
Q Consensus 163 vp~~s~~~v~~~--------~~~~~~~--~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~ 232 (295)
+|+..++++... .+.|+.| .++.+.|+++|..+++.| |.++.+|.|.+++++++.|+.+++.+.++.+
T Consensus 192 yPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ar--k~SSA~SaA~aacDhi~dw~~gTpeG~fvSm 269 (332)
T KOG1496|consen 192 YPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKAR--KLSSAMSAAKAACDHIRDWWFGTPEGTFVSM 269 (332)
T ss_pred CCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhh--hhhhhhhHHHhHhhhhhheecCCCCccEEEE
Confidence 999999998531 2445555 689999999999999974 5689999999999999999999997754444
Q ss_pred EEEeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546 233 CTFVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293 (295)
Q Consensus 233 ~~~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~ 293 (295)
..+++|.| |++..||+||++ ++|-|++++..+++++-+++++.++++|.++.+.+...++
T Consensus 270 gV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km~~t~~EL~eEkd~a~~~l~ 331 (332)
T KOG1496|consen 270 GVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKMDLTAKELKEEKDLAYSCLS 331 (332)
T ss_pred eeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhhhhhHHHHHHhHHHHHHhhc
Confidence 45889998 899999999999 7899999986699999999999999999999999998875
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=1.1e-36 Score=256.17 Aligned_cols=160 Identities=36% Similarity=0.537 Sum_probs=145.7
Q ss_pred chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCC----------CCCHHHHHHHHHHhhchhhhhh
Q 022546 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN----------NLSDEEIKALTKRTQDGGTEVV 196 (295)
Q Consensus 127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~----------~~~~~~~~~i~~~v~~~~~~i~ 196 (295)
|.||++||+++||+++|++|++++++||||||+ ++||+||++++++. .+++++++++.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 689999999999999999999999999999999 89999999999752 2556778999999999999999
Q ss_pred hhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-C-Cc-cEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 022546 197 EAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-T-EL-PFFASKVRLGKNGADEVLGLGPLSDYEKQ 272 (295)
Q Consensus 197 ~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~-~~-~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~ 272 (295)
+.| + |+++||+|.++++++++|++|.+ .++|++ +.+|+| . ++ +|||+||++|++|++++++.++|+++|++
T Consensus 80 ~~k-~-g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~ 154 (174)
T PF02866_consen 80 KAK-G-GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE 154 (174)
T ss_dssp HHH-S-SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred eec-c-ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence 975 2 89999999999999999999984 588887 779998 3 44 99999999999999999993399999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 022546 273 GLESLKPELKASIEKGIQFA 292 (295)
Q Consensus 273 ~l~~s~~~l~~~~~~~~~~~ 292 (295)
+|++|++.|++.++++++|+
T Consensus 155 ~l~~sa~~l~~~i~~~~~f~ 174 (174)
T PF02866_consen 155 KLKESAKELKKEIEKGLEFV 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999986
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.97 E-value=2.2e-30 Score=244.63 Aligned_cols=263 Identities=18% Similarity=0.145 Sum_probs=182.2
Q ss_pred CcCeEEEEeCCC-chhHHHhhhCCC---CCCeEEEeeCCCchhhhcCCCcEEEEcC---CC---------CCCCC-----
Q 022546 6 LVSSLSLYDIAN-TPGVAADVSHIN---SPAQVEGYAGEEQLGKALEGSDVVIIPA---GV---------PRKPG----- 64 (295)
Q Consensus 6 ~~~ei~L~D~~~-~~~~~~Dl~~~~---~~~~v~~~~~t~d~~~al~daDiVvi~~---g~---------~~~~g----- 64 (295)
-.+||+|+|+++ ....+..+.+.. ....++.. .|+|+++||+||||||.+. |. |.++|
T Consensus 28 ~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~-~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqe 106 (425)
T cd05197 28 PISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFE-KTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQE 106 (425)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEE-EeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCccccc
Confidence 358999999987 333333333221 12244443 3578999999999999953 32 23443
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhh
Q 022546 65 ---MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGK 141 (295)
Q Consensus 65 ---~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~ 141 (295)
.-....+.+|+++++++++.|+++||+||+||+|||+|++|+++ ++. +|+.||||+|.. +.|+++.+|+.
T Consensus 107 T~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~---~~~---~p~~rviG~c~~-~~r~~~~ia~~ 179 (425)
T cd05197 107 TVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV---RRY---VPPEKAVGLCNV-PIGVMEIVAKL 179 (425)
T ss_pred ccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH---HHh---CCCCcEEEECCC-HHHHHHHHHHH
Confidence 23788999999999999999999999999999999999999987 665 367899999877 89999999999
Q ss_pred cCCCCccceEEEee-CCCCceeeeccccCcCCCC----------------------------------------------
Q 022546 142 VNVPVAEVNVPVIG-GHAGVTILPLFSQATPKSN---------------------------------------------- 174 (295)
Q Consensus 142 l~v~~~~v~~~viG-~hg~~~~vp~~s~~~v~~~---------------------------------------------- 174 (295)
+|+++++|+++++| |||. .||+.++++.
T Consensus 180 lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl 254 (425)
T cd05197 180 LGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKSKDWKTENPFVDQLSPAAIDFYRFYGVLPNPYL 254 (425)
T ss_pred hCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccCccccccccccccccchHHHHHHhCCCcccCCc
Confidence 99999999999999 9983 3444433210
Q ss_pred -CC--CH----HHHHH-----------------HHHHhhchh--hhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546 175 -NL--SD----EEIKA-----------------LTKRTQDGG--TEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP 228 (295)
Q Consensus 175 -~~--~~----~~~~~-----------------i~~~v~~~~--~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~ 228 (295)
+| .+ ++.++ +.+..+... ...-.. ..++...|+ ..++++++||++|.+
T Consensus 255 ~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~-~~r~~~~~~--e~a~~ii~ai~~~~~--- 328 (425)
T cd05197 255 RYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVEL-IKRGGRKYS--EAAIPLIRALLNDNG--- 328 (425)
T ss_pred cccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhh-hhcCCcccH--HHHHHHHHHHHcCCC---
Confidence 00 00 00000 111111000 000000 011334455 899999999999975
Q ss_pred ceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546 229 DIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG 288 (295)
Q Consensus 229 ~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~ 288 (295)
..+.++ .++|.+ |+|.++++||+++++|+.++ ..++|++..+++++.-...-+-.++.+
T Consensus 329 ~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~-~vg~lp~~~~~Li~~~~~~e~l~veAa 391 (425)
T cd05197 329 ARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPI-KVGPLDRFVKGLLRQRKMRERLALEAF 391 (425)
T ss_pred eEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceec-ccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355555 568875 88999999999999999997 556999988887776544444344433
No 38
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.97 E-value=2.5e-29 Score=236.98 Aligned_cols=264 Identities=18% Similarity=0.220 Sum_probs=181.1
Q ss_pred CcCeEEEEeCC-C-chhHHH----hhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCC-------------
Q 022546 6 LVSSLSLYDIA-N-TPGVAA----DVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMT------------- 66 (295)
Q Consensus 6 ~~~ei~L~D~~-~-~~~~~~----Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~------------- 66 (295)
..+||+|+|++ + ....+. .+..... +.++.. .|+|+++|++||||||++.+....++++
T Consensus 28 ~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~-~~~~v~-~t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~g 105 (419)
T cd05296 28 PVTELVLVDIDEEEKLEIVGALAKRMVKKAG-LPIKVH-LTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIG 105 (419)
T ss_pred CCCEEEEecCChHHHHHHHHHHHHHHHHhhC-CCeEEE-EeCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCcc
Confidence 46899999999 5 322232 3322222 233433 3578999999999999987665444433
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHH
Q 022546 67 -------RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYA 139 (295)
Q Consensus 67 -------r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la 139 (295)
....+.+|+++++++++.|+++||+||+|++|||+|++|+++ +|.+ +.||||+|..+ .|+++.+|
T Consensus 106 qET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~---~k~~----~~rviGlc~~~-~r~~~~ia 177 (419)
T cd05296 106 QETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV---LRHT----GDRVIGLCNVP-IGLQRRIA 177 (419)
T ss_pred ccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---HHhc----cCCEEeeCCcH-HHHHHHHH
Confidence 355689999999999999999999999999999999999986 5654 68999999774 79999999
Q ss_pred hhcCCCCccceEEEee-CCCC---------ceeeec----------------cccCcC---CC-C-----C--CCHHHH-
Q 022546 140 GKVNVPVAEVNVPVIG-GHAG---------VTILPL----------------FSQATP---KS-N-----N--LSDEEI- 181 (295)
Q Consensus 140 ~~l~v~~~~v~~~viG-~hg~---------~~~vp~----------------~s~~~v---~~-~-----~--~~~~~~- 181 (295)
+.+|+++++|+++++| ||.. ++.+|. |+..-. +. + + +.++..
T Consensus 178 ~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~ 257 (419)
T cd05296 178 ELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLLFGPELLRALGALPNEYLRYYYQTDEALE 257 (419)
T ss_pred HHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccchHHHHHHhcCCcccchHHHHCCcHHHHH
Confidence 9999999999999999 8876 233331 111000 00 0 0 111111
Q ss_pred -------------HHHHHHh----hchh----hhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCC
Q 022546 182 -------------KALTKRT----QDGG----TEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSS 239 (295)
Q Consensus 182 -------------~~i~~~v----~~~~----~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~ 239 (295)
+++.+++ ++.. .+.+. .++.+.|| ..++++++||++|.+ ..+.++ .++|.
T Consensus 258 ~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~---~r~g~~y~--e~a~~ii~ai~~~~~---~~~~vNv~N~G~ 329 (419)
T cd05296 258 EILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELE---KRGGAGYS--EAALALISAIYNDKG---DIHVVNVRNNGA 329 (419)
T ss_pred HhhhhccchHHHHHHHHHHHHHHHhccccccChHhhH---hhcCcchH--HHHHHHHHHHhcCCC---cEEEEECCCCCC
Confidence 1111111 1110 01111 22344555 899999999999875 344455 56887
Q ss_pred C---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546 240 V---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG 288 (295)
Q Consensus 240 ~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~ 288 (295)
+ |+|.++++||.++++|+.++ ..++|++..+++++.-...=+-.++.+
T Consensus 330 I~~Lp~d~vVEvp~~v~~~G~~P~-~vg~lP~~~~~l~~~~~~~e~l~veAa 380 (419)
T cd05296 330 IPGLPDDAVVEVPCVVDADGAHPL-PVGPLPPAILGLIQQVKAYERLTIEAA 380 (419)
T ss_pred CCCCCCCCEEEEeEEEcCCCceec-cCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5 78999999999999999997 566999999888766544433334433
No 39
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.96 E-value=1e-29 Score=206.35 Aligned_cols=118 Identities=40% Similarity=0.637 Sum_probs=105.2
Q ss_pred CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCCC--eEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546 1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSPA--QVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG 76 (295)
Q Consensus 1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~~--~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~ 76 (295)
|+++++++||+|+|+++ ++|+++||+|+.++. ...... .+ +++++|||+||+++|.++++|++|.+++..|++
T Consensus 20 l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~ 96 (141)
T PF00056_consen 20 LAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS--GD-YEALKDADIVVITAGVPRKPGMSRLDLLEANAK 96 (141)
T ss_dssp HHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE--SS-GGGGTTESEEEETTSTSSSTTSSHHHHHHHHHH
T ss_pred HHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc--cc-ccccccccEEEEeccccccccccHHHHHHHhHh
Confidence 35679999999999996 899999999986433 344433 33 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546 77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125 (295)
Q Consensus 77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG 125 (295)
+++++++.|++++|+++++++|||+|+||+++ ++++| +|++|+||
T Consensus 97 i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~---~~~s~-~~~~kviG 141 (141)
T PF00056_consen 97 IVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVA---QKYSG-FPPNKVIG 141 (141)
T ss_dssp HHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHH---HHHHT-SSGGGEEE
T ss_pred HHHHHHHHHHHhCCccEEEEeCCcHHHHHHHH---HHhhC-cCcccCcC
Confidence 99999999999999999999999999999987 89999 99999998
No 40
>PRK15076 alpha-galactosidase; Provisional
Probab=99.96 E-value=1.2e-27 Score=226.81 Aligned_cols=267 Identities=15% Similarity=0.141 Sum_probs=178.9
Q ss_pred CCCcC-eEEEEeCCC--ch-hHHHhhhCCC--CCCeEEEeeCCCchhhhcCCCcEEEEcCCCC-CCCC------------
Q 022546 4 DPLVS-SLSLYDIAN--TP-GVAADVSHIN--SPAQVEGYAGEEQLGKALEGSDVVIIPAGVP-RKPG------------ 64 (295)
Q Consensus 4 ~~~~~-ei~L~D~~~--~~-~~~~Dl~~~~--~~~~v~~~~~t~d~~~al~daDiVvi~~g~~-~~~g------------ 64 (295)
.++.. ||+|+|+++ ++ +..+ +.+.. ....++.. .|+|+++|++||||||++++.+ ++++
T Consensus 26 ~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G 103 (431)
T PRK15076 26 PALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYG 103 (431)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcC
Confidence 44554 999999987 32 3333 44321 12223332 3568889999999999998876 4434
Q ss_pred --CCHHHH--------HHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecc--hhhHH
Q 022546 65 --MTRDDL--------FNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVT--TLDVV 132 (295)
Q Consensus 65 --~~r~~~--------~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t--~ld~~ 132 (295)
++|.+. +.+|+++++++++.|+++||+||+|++|||+|++|+++ + + +|+.||||+| .+|+.
T Consensus 104 ~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~---~---~-~~~~rviG~c~~~~~~~ 176 (431)
T PRK15076 104 LRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM---N---R-YPGIKTVGLCHSVQGTA 176 (431)
T ss_pred CeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH---h---c-CCCCCEEEECCCHHHHH
Confidence 455555 99999999999999999999999999999999999876 3 4 8889999997 57774
Q ss_pred HHHHHHHhhcCCCCccceEEEee-CCCC---------ceeeecccc---C-------cCC-------C------------
Q 022546 133 RAKTFYAGKVNVPVAEVNVPVIG-GHAG---------VTILPLFSQ---A-------TPK-------S------------ 173 (295)
Q Consensus 133 R~~~~la~~l~v~~~~v~~~viG-~hg~---------~~~vp~~s~---~-------~v~-------~------------ 173 (295)
+.+|+.+|+++++|++++.| ||.. ++.+|.... . .+. +
T Consensus 177 ---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (431)
T PRK15076 177 ---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAE 253 (431)
T ss_pred ---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCchhcccccHHHHHHhCCCcccchhhhhh
Confidence 88999999999999999999 5554 122332100 0 000 0
Q ss_pred --CCC----CHHHHHHHHH----Hh------hchhhhhh-hhccCCCcch--hhHHHHHHHHHHHHHcCcCCCCceeEEE
Q 022546 174 --NNL----SDEEIKALTK----RT------QDGGTEVV-EAKAGKGSAT--LSMAYAGAVFADACLMGLNGVPDIVECT 234 (295)
Q Consensus 174 --~~~----~~~~~~~i~~----~v------~~~~~~i~-~~~~~kg~~~--~s~a~a~~~~i~ai~~~~~~~~~v~~~~ 234 (295)
+++ .++..+.+.. .. .....+.+ +.+. |.+. -..+..++++++||.+|.+ ..+.++
T Consensus 254 y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~a~~ii~ai~~~~~---~~~~vn 328 (431)
T PRK15076 254 YVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELAN--AERIEIKRSREYASTIIEAIETGEP---SVIYGN 328 (431)
T ss_pred hhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhC--CCccccccchHHHHHHHHHHhcCCc---eEEEEE
Confidence 011 2222222211 00 01111111 1111 2111 1134889999999999875 355555
Q ss_pred -EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546 235 -FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG 288 (295)
Q Consensus 235 -~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~ 288 (295)
.++|.+ |+|.++++||.++++|+.++ ..++|++..+++++.-...-+-.++.+
T Consensus 329 v~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~-~~g~lP~~~~~l~~~~~~~e~l~veAa 385 (431)
T PRK15076 329 VRNNGLIDNLPQGCCVEVPCLVDRNGIQPT-KVGDLPPQLAALNRTNINVQELTVEAA 385 (431)
T ss_pred CCCCCcCCCCCCCCEEEEeEEEcCCcceee-ecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 568875 88999999999999999997 456999999998776655444444444
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.96 E-value=1e-26 Score=220.07 Aligned_cols=271 Identities=17% Similarity=0.184 Sum_probs=180.5
Q ss_pred CcCeEEEEeCCC-chhHHHhhhCCC---CCCeEEEeeCCCchhhhcCCCcEEEEc---CCC---------CCCCC-----
Q 022546 6 LVSSLSLYDIAN-TPGVAADVSHIN---SPAQVEGYAGEEQLGKALEGSDVVIIP---AGV---------PRKPG----- 64 (295)
Q Consensus 6 ~~~ei~L~D~~~-~~~~~~Dl~~~~---~~~~v~~~~~t~d~~~al~daDiVvi~---~g~---------~~~~g----- 64 (295)
-.+||+|+|+++ ....+..+.+.. ....+++. .|+|+.+|++||||||.+ +|. |.++|
T Consensus 28 ~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~-~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqE 106 (437)
T cd05298 28 PLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFV-YTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQE 106 (437)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEE-EECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceec
Confidence 358999999998 333444443321 12244443 357899999999999995 342 23343
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhh
Q 022546 65 ---MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGK 141 (295)
Q Consensus 65 ---~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~ 141 (295)
.-....+.||+++++++++.|+++||+||+|++|||+|++|+++ ++. +|+.||||+|+... -++..+|+.
T Consensus 107 T~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~---~~~---~~~~kviGlC~~~~-~~~~~la~~ 179 (437)
T cd05298 107 TCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL---RRL---FPNARILNICDMPI-AIMDSMAAI 179 (437)
T ss_pred CccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHH---CCCCCEEEECCcHH-HHHHHHHHH
Confidence 23688999999999999999999999999999999999999986 554 67889999998754 578899999
Q ss_pred cCCCCccceEEEee-CCCC----------ceeeeccc----c----------C---c-------------------CCCC
Q 022546 142 VNVPVAEVNVPVIG-GHAG----------VTILPLFS----Q----------A---T-------------------PKSN 174 (295)
Q Consensus 142 l~v~~~~v~~~viG-~hg~----------~~~vp~~s----~----------~---~-------------------v~~~ 174 (295)
||+++++++..+.| ||.. ++..|... . . . +...
T Consensus 180 lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~ 259 (437)
T cd05298 180 LGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNT 259 (437)
T ss_pred hCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCcccccccccccCchHHHHHHhhHHHhCCCcCCCc
Confidence 99999999999999 4432 12333211 0 0 0 0000
Q ss_pred ---C-C-CHHHHHHHH-------HHhhchhhhhhhhc-----cCC--Ccchh--hHHHHHHHHHHHHHcCcCCCCceeEE
Q 022546 175 ---N-L-SDEEIKALT-------KRTQDGGTEVVEAK-----AGK--GSATL--SMAYAGAVFADACLMGLNGVPDIVEC 233 (295)
Q Consensus 175 ---~-~-~~~~~~~i~-------~~v~~~~~~i~~~~-----~~k--g~~~~--s~a~a~~~~i~ai~~~~~~~~~v~~~ 233 (295)
+ + +++..+++. +.+.+...++++.. .++ ..... ..|.+++++++||++|++ .++++
T Consensus 260 y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ya~~a~~ii~aI~~d~~---~~~~v 336 (437)
T cd05298 260 YLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTFHVDVHGEYIVDLAASIAYNTK---ERFLV 336 (437)
T ss_pred hhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhhhccchHHHHHHHHHHHHcCCC---eEEEE
Confidence 0 0 111001100 00111111110000 000 00110 145899999999999875 57778
Q ss_pred E-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546 234 T-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG 288 (295)
Q Consensus 234 ~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~ 288 (295)
+ .++|.| ++|+++|+||+||++|+.++ ..++|++...++++.-...-+-.++.+
T Consensus 337 nv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi-~vg~lP~~~~~l~~~~~~~e~l~veAa 394 (437)
T cd05298 337 IVENNGAIPNLPDDAMVEVPAYIGSNGPEPL-VVGKIPTFYKGLMEQQVAYEKLLVEAY 394 (437)
T ss_pred EeecCCccCCCCCCcEEEEEEEEeCCCceec-ccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7 678886 68999999999999999997 456999999998776655544444444
No 42
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.5e-24 Score=201.52 Aligned_cols=268 Identities=17% Similarity=0.169 Sum_probs=180.2
Q ss_pred cCeEEEEeCCC-chhHHHhhhCCC---CCCeEEEeeCCCchhhhcCCCcEEEEcC---C---------CCCCCC---C--
Q 022546 7 VSSLSLYDIAN-TPGVAADVSHIN---SPAQVEGYAGEEQLGKALEGSDVVIIPA---G---------VPRKPG---M-- 65 (295)
Q Consensus 7 ~~ei~L~D~~~-~~~~~~Dl~~~~---~~~~v~~~~~t~d~~~al~daDiVvi~~---g---------~~~~~g---~-- 65 (295)
.+||+|+|+++ ....+.++.+.. ..+.+++.. |+|+++||+|||||+.+. | .|.|+| +
T Consensus 32 ~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~-ttd~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET 110 (442)
T COG1486 32 VRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEA-TTDRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQET 110 (442)
T ss_pred cceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCcccccc
Confidence 57999999988 555555555431 122344443 468999999999999953 3 244544 2
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhc
Q 022546 66 ---TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKV 142 (295)
Q Consensus 66 ---~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l 142 (295)
.......|++|++.+||+.|+++||+||++++|||+.++|+++ .++ +|..|++|+|+... -....+|+.|
T Consensus 111 ~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv---~r~---~~~~K~VGlCh~~~-g~~~~lAe~L 183 (442)
T COG1486 111 NGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV---RRL---YPKIKIVGLCHGPI-GIAMELAEVL 183 (442)
T ss_pred ccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH---HHh---CCCCcEEeeCCchH-HHHHHHHHHh
Confidence 3678889999999999999999999999999999999999986 564 55449999998743 5688999999
Q ss_pred CCCC-ccceEEEee-CCCC---------ceeee-----------------------ccccCcC--CC---C-------CC
Q 022546 143 NVPV-AEVNVPVIG-GHAG---------VTILP-----------------------LFSQATP--KS---N-------NL 176 (295)
Q Consensus 143 ~v~~-~~v~~~viG-~hg~---------~~~vp-----------------------~~s~~~v--~~---~-------~~ 176 (295)
|+++ ++++.-+.| ||.. ....| .|..... +. + ++
T Consensus 184 ~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 263 (442)
T COG1486 184 GLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYY 263 (442)
T ss_pred CCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCccccccccCcchHHHHHHhCcCcccCcchhhhee
Confidence 9975 999999999 4433 11111 1111100 00 0 00
Q ss_pred CHHH----HHHH------HHHhhchhhhhhhhc------------cCCCcc--hhhHHHHHHHHHHHHHcCcCCCCceeE
Q 022546 177 SDEE----IKAL------TKRTQDGGTEVVEAK------------AGKGSA--TLSMAYAGAVFADACLMGLNGVPDIVE 232 (295)
Q Consensus 177 ~~~~----~~~i------~~~v~~~~~~i~~~~------------~~kg~~--~~s~a~a~~~~i~ai~~~~~~~~~v~~ 232 (295)
+... ..++ .+.++++..+.++.+ ..++.+ .|+ .+++.++.||++|++ .++.
T Consensus 264 ~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--e~a~~ii~Ai~~~~~---~~~~ 338 (442)
T COG1486 264 PYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKRIGAGKYSS--EYASNIINAIENNKP---SRIY 338 (442)
T ss_pred hHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhcCCcccccH--HHHHHHHHHHhcCCc---eEEE
Confidence 0000 0000 111111111111110 112233 455 888999999999976 3555
Q ss_pred EE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546 233 CT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG 288 (295)
Q Consensus 233 ~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~ 288 (295)
++ .++|.+ |+|.++++||+++++|+.++.. +.|++..+++++.....-+-.++.+
T Consensus 339 vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~~~~i~~e~l~veA~ 397 (442)
T COG1486 339 VNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLMHTNINVEELTVEAA 397 (442)
T ss_pred EEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 65 578875 8999999999999999999765 5999999998888766555444443
No 43
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.93 E-value=4.7e-24 Score=202.41 Aligned_cols=264 Identities=16% Similarity=0.149 Sum_probs=179.7
Q ss_pred CeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCH--------------
Q 022546 8 SSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTR-------------- 67 (295)
Q Consensus 8 ~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r-------------- 67 (295)
.+|+|+|+++ ++....++.+.. .+.+++ .|+|++++++|||+||++.+....++.++
T Consensus 30 ~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~---~ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~ 106 (423)
T cd05297 30 STIALMDIDEERLETVEILAKKIVEELGAPLKIE---ATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTV 106 (423)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE---EeCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeec
Confidence 4999999987 555556655432 223444 34688899999999999887544444333
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHH
Q 022546 68 --------DDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYA 139 (295)
Q Consensus 68 --------~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la 139 (295)
.....+|++++.++++.++++||++|++++|||++++|+++ +|.++ .|+||+|.. +.|++..+|
T Consensus 107 ~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~---~k~~~----~rviG~c~~-~~~~~~~~a 178 (423)
T cd05297 107 GDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL---NRYTP----IKTVGLCHG-VQGTAEQLA 178 (423)
T ss_pred cCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---HHhCC----CCEEEECCc-HHHHHHHHH
Confidence 77889999999999999999999999999999999999987 67665 699999865 789999999
Q ss_pred hhcCCCCccceEEEee-CCCC---------ceeeeccc-----------cCc-CC-------C--C------------CC
Q 022546 140 GKVNVPVAEVNVPVIG-GHAG---------VTILPLFS-----------QAT-PK-------S--N------------NL 176 (295)
Q Consensus 140 ~~l~v~~~~v~~~viG-~hg~---------~~~vp~~s-----------~~~-v~-------~--~------------~~ 176 (295)
+.+|+++++|+++++| ||.. ++.+|... ... +. + + ++
T Consensus 179 ~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~ 258 (423)
T cd05297 179 KLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHY 258 (423)
T ss_pred HHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcccchHHHHHHcCCcccCcchhhhhhcccc
Confidence 9999999999999999 5544 12333211 111 00 0 0 00
Q ss_pred --CHHHHHH------------------HHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-E
Q 022546 177 --SDEEIKA------------------LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-F 235 (295)
Q Consensus 177 --~~~~~~~------------------i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~ 235 (295)
.++.... ...........-.......+...++ ..++++++||.+|.+ ..+.++ .
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~a~~ii~ai~~~~~---~~~~vnv~ 333 (423)
T cd05297 259 RKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSG--EYASPIIEALVTGKP---RRINGNVP 333 (423)
T ss_pred ccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchhccccccch--HHHHHHHHHHhcCCc---eEEEEECC
Confidence 1011111 1111110000000000001122233 789999999999865 355555 5
Q ss_pred eeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546 236 VQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG 288 (295)
Q Consensus 236 ~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~ 288 (295)
++|.+ |+|.++++||.++++|+.++ ..++|++..+++++.-...-+-.++.+
T Consensus 334 N~G~I~~Lp~d~vVEvp~~v~~~G~~p~-~~g~lp~~~~~l~~~~~~~e~l~veA~ 388 (423)
T cd05297 334 NNGLIPNLPDDVVVEVPALVDRNGIHPE-KIGPLPPQLAALIRPRINVQELAVEAA 388 (423)
T ss_pred CCCCCCCCCCCcEEEEeeEEcCCCceec-ccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 68875 88999999999999999997 557999999988777655544444443
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.77 E-value=2.5e-18 Score=144.05 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=93.1
Q ss_pred cCeEEEEeCCC-chhHHH----hhhCCC-CCCeEEEeeCCCchhhhcCCCcEEEEcCC------------CCCCCCCC--
Q 022546 7 VSSLSLYDIAN-TPGVAA----DVSHIN-SPAQVEGYAGEEQLGKALEGSDVVIIPAG------------VPRKPGMT-- 66 (295)
Q Consensus 7 ~~ei~L~D~~~-~~~~~~----Dl~~~~-~~~~v~~~~~t~d~~~al~daDiVvi~~g------------~~~~~g~~-- 66 (295)
.+||+|+|+++ ....+. .+.... .+.++.. |+|+++|++|||+||.+.. .|.++|..
T Consensus 28 ~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~---ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~ 104 (183)
T PF02056_consen 28 GSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEA---TTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGT 104 (183)
T ss_dssp EEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEE---ESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-B
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEE---eCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccc
Confidence 46999999997 333333 332222 2345443 5789999999999999654 24555421
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHH
Q 022546 67 --------RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFY 138 (295)
Q Consensus 67 --------r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~l 138 (295)
....+.|++|.+.++++.|+++|||||++|+|||+.++|+++ .+. +|..|++|+|+.. .-+...+
T Consensus 105 ~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~---~r~---~~~~k~vGlCh~~-~~~~~~l 177 (183)
T PF02056_consen 105 IQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL---SRY---TPKIKVVGLCHGP-QGTRRQL 177 (183)
T ss_dssp TTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---HHH---STTSEEEEE-SHH-HHHHHHH
T ss_pred cccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---HHh---CCCCCEEEECCCH-HHHHHHH
Confidence 688999999999999999999999999999999999999886 565 4457999999875 4677888
Q ss_pred HhhcCC
Q 022546 139 AGKVNV 144 (295)
Q Consensus 139 a~~l~v 144 (295)
|+.||+
T Consensus 178 a~~L~~ 183 (183)
T PF02056_consen 178 AKLLGM 183 (183)
T ss_dssp HHHHT-
T ss_pred HHHhCc
Confidence 998874
No 45
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=97.20 E-value=0.0033 Score=55.15 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=51.6
Q ss_pred CcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 022546 203 GSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278 (295)
Q Consensus 203 g~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~ 278 (295)
|+..|+ . .++.+|.+|.+ .++.++ .++|.+ |+|.++++||+|+++|+.++ ..++|++..+++++...
T Consensus 134 ~~~~~a--~---~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~-~~g~lP~~~~~li~~~~ 204 (232)
T PF11975_consen 134 GSGEYA--E---AAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPV-AVGPLPPAIAGLIQQVK 204 (232)
T ss_dssp TTSCHH--H---HHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB--SB---HHHHHHHHHHH
T ss_pred cccchH--H---HHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEec-cCCCCCHHHHHHHHHHH
Confidence 455555 4 45555577754 355565 568875 78999999999999999995 55699999999887766
Q ss_pred HHHHHHHHHHh
Q 022546 279 PELKASIEKGI 289 (295)
Q Consensus 279 ~~l~~~~~~~~ 289 (295)
..-+-.++.++
T Consensus 205 ~~e~L~veAa~ 215 (232)
T PF11975_consen 205 AYERLTVEAAL 215 (232)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555555443
No 46
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.94 E-value=6.8 Score=37.05 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=44.1
Q ss_pred CCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--cCCccchHHHH
Q 022546 40 EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMI--SNPVNSTVPIA 108 (295)
Q Consensus 40 t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~t~~~ 108 (295)
|+|+++|+++||+++|+-|.|.++.-+ .+...+...++.|.+..+...+||+ |=|+.....+-
T Consensus 67 Ttd~~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~ 131 (414)
T COG1004 67 TTDYEEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR 131 (414)
T ss_pred EcCHHHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence 568899999999999998888766321 2246677777777777665344444 66777766654
No 47
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.52 E-value=4.9 Score=34.61 Aligned_cols=76 Identities=20% Similarity=0.119 Sum_probs=41.6
Q ss_pred CeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 022546 8 SSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSL 81 (295)
Q Consensus 8 ~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i 81 (295)
.++.++|.++ +.....++.+.. ....+.. + +..++++++|+||++... ..+.++
T Consensus 25 ~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~---~-~~~ea~~~aDvVilavp~----------------~~~~~~ 84 (219)
T TIGR01915 25 NKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG---A-DNAEAAKRADVVILAVPW----------------DHVLKT 84 (219)
T ss_pred CEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE---e-ChHHHHhcCCEEEEECCH----------------HHHHHH
Confidence 5788998865 333333332211 1112222 1 236789999999997531 112233
Q ss_pred HHHHHhhCCCeEEEEecCCccc
Q 022546 82 CTAIANYCPHALVNMISNPVNS 103 (295)
Q Consensus 82 ~~~i~~~~p~a~viv~tNP~d~ 103 (295)
++.+...-++.++|-++||.+.
T Consensus 85 l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 85 LESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHHHhccCCEEEEeccCcee
Confidence 3333333234678899999875
No 48
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.46 E-value=4.7 Score=36.31 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=37.0
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCccchHHHHHHHHHHhCCCC
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISNPVNSTVPIAAEVFKKAGTYD 119 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~k~sg~~~ 119 (295)
+|+.+++++||+||.+.. .+....+++...+.++.+ ++++ ++|.......- +.+... .
T Consensus 76 ~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~~~~~---~~~~~~-~- 134 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTLLPSQ---FAEATG-R- 134 (287)
T ss_pred CCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccCCHHH---HHhhcC-C-
Confidence 567778999999999752 113444555556666664 5433 45655443321 233332 2
Q ss_pred CCCeeec
Q 022546 120 EKKLFGV 126 (295)
Q Consensus 120 ~~kviG~ 126 (295)
+.|++|+
T Consensus 135 ~~r~vg~ 141 (287)
T PRK08293 135 PEKFLAL 141 (287)
T ss_pred cccEEEE
Confidence 4577775
No 49
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=81.94 E-value=7.2 Score=35.05 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=57.2
Q ss_pred CCCCCcCeEEEEeCCCchhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCC-CCHHHHHHHHHHHH
Q 022546 2 KLDPLVSSLSLYDIANTPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG-MTRDDLFNINAGIV 78 (295)
Q Consensus 2 ~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g-~~r~~~~~~n~~i~ 78 (295)
..+|-..+++.+|+........++.+... ...-..+ ..+++.++++++|+|+-++....-.+ .....+..-|+.--
T Consensus 18 l~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~-d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT 96 (280)
T PF01073_consen 18 LERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDIT-DPESLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGT 96 (280)
T ss_pred HHCCCceEEEEcccccccccchhhhcccceeEEEeccc-cHHHHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHH
Confidence 34555788999998652222123332211 1111111 23467899999999999887543333 45777899999999
Q ss_pred HHHHHHHHhhCCC
Q 022546 79 KSLCTAIANYCPH 91 (295)
Q Consensus 79 ~~i~~~i~~~~p~ 91 (295)
+.+.+.+.+.+-+
T Consensus 97 ~nvl~aa~~~~Vk 109 (280)
T PF01073_consen 97 RNVLEAARKAGVK 109 (280)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999987543
No 50
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=76.28 E-value=4.7 Score=36.95 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=33.4
Q ss_pred CCCcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcC
Q 022546 4 DPLVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPA 57 (295)
Q Consensus 4 ~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~ 57 (295)
.| +++|.++|.+. ++..+.++++ . ...+... +|.++++++||+|+.+-
T Consensus 151 ~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 151 RP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT 200 (313)
T ss_dssp S---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred CC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence 45 89999999987 6777888887 2 4455543 46789999999998853
No 51
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=73.21 E-value=27 Score=27.64 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCcc-chHHHHHHHHHHhCCCCCCCeee
Q 022546 48 EGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISNPVN-STVPIAAEVFKKAGTYDEKKLFG 125 (295)
Q Consensus 48 ~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~d-~~t~~~~~~~k~sg~~~~~kviG 125 (295)
.++|+|.+++- .....+.++++++.+++.++ +..+++-+++.+ -.. .++..| + ..+|+
T Consensus 52 ~~adii~iSsl------------~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~-----~l~~~G-v--d~~~~ 111 (132)
T TIGR00640 52 ADVHVVGVSSL------------AGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFD-----ELKEMG-V--AEIFG 111 (132)
T ss_pred cCCCEEEEcCc------------hhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHH-----HHHHCC-C--CEEEC
Confidence 58999999763 24456778999999998776 444555555543 232 256777 5 67999
Q ss_pred c-chhh
Q 022546 126 V-TTLD 130 (295)
Q Consensus 126 ~-t~ld 130 (295)
. |.+.
T Consensus 112 ~gt~~~ 117 (132)
T TIGR00640 112 PGTPIP 117 (132)
T ss_pred CCCCHH
Confidence 8 6543
No 52
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=71.29 E-value=9.7 Score=37.10 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCchhhhcCCCcEEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--cCCccchHHHHH
Q 022546 40 EEQLGKALEGSDVVIIPAGVPRKPGM-TRDDLFNINAGIVKSLCTAIANYCPHALVNMI--SNPVNSTVPIAA 109 (295)
Q Consensus 40 t~d~~~al~daDiVvi~~g~~~~~g~-~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~t~~~~ 109 (295)
|+|+.+++++||++|++-+.|...+- .. + -.-+...+.+.++.|.++-+++.+|++ |-|..+.-.+..
T Consensus 69 t~~~~~~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~ 139 (473)
T PLN02353 69 STDVEKHVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEK 139 (473)
T ss_pred EcCHHHHHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHH
Confidence 35667789999999999888864321 00 0 011233456666666666555555444 778877665543
No 53
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.23 E-value=19 Score=32.21 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=36.9
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCC
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYD 119 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~ 119 (295)
+|+ +++++||+||.+.- .+..+-+++...+.+++ |++++ +||-..+-...+ ....+ .
T Consensus 75 ~~~-~~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l---a~~~~-~- 132 (282)
T PRK05808 75 TDL-DDLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL---AAATK-R- 132 (282)
T ss_pred CCH-HHhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH---HHhhC-C-
Confidence 454 56899999999752 12233345555566766 46544 566655444332 33333 3
Q ss_pred CCCeeec
Q 022546 120 EKKLFGV 126 (295)
Q Consensus 120 ~~kviG~ 126 (295)
+.|++|+
T Consensus 133 ~~r~ig~ 139 (282)
T PRK05808 133 PDKVIGM 139 (282)
T ss_pred CcceEEe
Confidence 4578886
No 54
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.09 E-value=23 Score=32.61 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=38.5
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCC
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~ 120 (295)
+++++++++||+|+-+.- ++. .+=+++-..+.+++|... |+.||-..+...-+ ..... .|
T Consensus 75 ~~l~~av~~aDlViEavp-------E~l-------~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~l---a~~~~--~p 134 (321)
T PRK07066 75 ATIEACVADADFIQESAP-------ERE-------ALKLELHERISRAAKPDA-IIASSTSGLLPTDF---YARAT--HP 134 (321)
T ss_pred CCHHHHhcCCCEEEECCc-------CCH-------HHHHHHHHHHHHhCCCCe-EEEECCCccCHHHH---HHhcC--Cc
Confidence 467789999999988642 122 222333356667774333 66788776654322 23332 35
Q ss_pred CCeeec
Q 022546 121 KKLFGV 126 (295)
Q Consensus 121 ~kviG~ 126 (295)
+|++|+
T Consensus 135 ~R~~g~ 140 (321)
T PRK07066 135 ERCVVG 140 (321)
T ss_pred ccEEEE
Confidence 678775
No 55
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=63.39 E-value=30 Score=25.22 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=30.3
Q ss_pred EeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 022546 235 FVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278 (295)
Q Consensus 235 ~~~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~ 278 (295)
+++|+ .+.|+++|..=.++|..+-+.. |+|.+-++.|+.++
T Consensus 36 Vieg~--~GlFVaMPs~k~~~g~y~Di~~-Pitke~Re~i~~aV 76 (84)
T PF04026_consen 36 VIEGE--KGLFVAMPSRKSKDGEYKDICH-PITKEFREQIEEAV 76 (84)
T ss_dssp EEEET--TEEEEE--EEE-TTS-EEESEE-ESSHHHHHHHHHHH
T ss_pred EEECC--CCcEEECCCcCCCCCCEEEEEE-ECCHHHHHHHHHHH
Confidence 45664 5899999999999988887766 89999999998864
No 56
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=62.92 E-value=26 Score=31.46 Aligned_cols=64 Identities=9% Similarity=0.243 Sum_probs=35.2
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCC
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYD 119 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~ 119 (295)
+|+ +++++||+||.+.... ..+.+++.+.+.+++ |+++++ ||-..+...-+ ....+ .
T Consensus 78 ~~~-~~~~~aDlVieav~e~--------------~~~k~~~~~~l~~~~~~~~il~--S~tsg~~~~~l---a~~~~--~ 135 (291)
T PRK06035 78 TSY-ESLSDADFIVEAVPEK--------------LDLKRKVFAELERNVSPETIIA--SNTSGIMIAEI---ATALE--R 135 (291)
T ss_pred CCH-HHhCCCCEEEEcCcCc--------------HHHHHHHHHHHHhhCCCCeEEE--EcCCCCCHHHH---HhhcC--C
Confidence 454 6799999999975211 233344445566665 566554 55444333221 22222 2
Q ss_pred CCCeeec
Q 022546 120 EKKLFGV 126 (295)
Q Consensus 120 ~~kviG~ 126 (295)
+.|++|+
T Consensus 136 ~~r~ig~ 142 (291)
T PRK06035 136 KDRFIGM 142 (291)
T ss_pred cccEEEE
Confidence 5678886
No 57
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=62.82 E-value=22 Score=31.54 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=45.8
Q ss_pred hhhhcCCCcEEEEcCCCC-------------CCCCC-----C-HH-----HHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 022546 43 LGKALEGSDVVIIPAGVP-------------RKPGM-----T-RD-----DLFNINAGIVKSLCTAIANYCPHALVNMIS 98 (295)
Q Consensus 43 ~~~al~daDiVvi~~g~~-------------~~~g~-----~-r~-----~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 98 (295)
..+.|++||++|+|-|.. .-||+ + +. --...+...+..+...|++.+|+..||.-.
T Consensus 95 ~~~~l~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~nP~~kiilTV 174 (251)
T PF08885_consen 95 VREALEEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSINPDIKIILTV 174 (251)
T ss_pred HHHHHHhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence 357899999999987742 11121 1 11 234678888999999999999999999888
Q ss_pred CCccchH
Q 022546 99 NPVNSTV 105 (295)
Q Consensus 99 NP~d~~t 105 (295)
.|+=.+.
T Consensus 175 SPVrl~~ 181 (251)
T PF08885_consen 175 SPVRLIA 181 (251)
T ss_pred ccchhhc
Confidence 8985553
No 58
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=60.89 E-value=16 Score=33.30 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=71.9
Q ss_pred cCeEEEEeCCC--chhHHHhhhCCCCCCeEE----EeeCC----CchhhhcC--CCcEEEEcCCCCCCC--CCCHHHHHH
Q 022546 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVE----GYAGE----EQLGKALE--GSDVVIIPAGVPRKP--GMTRDDLFN 72 (295)
Q Consensus 7 ~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~----~~~~t----~d~~~al~--daDiVvi~~g~~~~~--g~~r~~~~~ 72 (295)
..+|+|+|.++ ...+-.++.......+++ ...+. ..+..+++ +.|+|+=+|....-| ...-.+.+.
T Consensus 23 p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~ 102 (293)
T PF02719_consen 23 PKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVK 102 (293)
T ss_dssp -SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE------HHHHCCCHHHHHH
T ss_pred CCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHH
Confidence 47899999987 445556663211111121 11111 22356677 999999987644322 234577889
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEec----CCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhc---CCC
Q 022546 73 INAGIVKSLCTAIANYCPHALVNMIS----NPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKV---NVP 145 (295)
Q Consensus 73 ~n~~i~~~i~~~i~~~~p~a~viv~t----NP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l---~v~ 145 (295)
.|+-=-+.+++...+++-+-+|.+=| ||+++| |.|-.=.-++-...+... +..
T Consensus 103 tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm--------------------GatKrlaE~l~~~~~~~~~~~~t~ 162 (293)
T PF02719_consen 103 TNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM--------------------GATKRLAEKLVQAANQYSGNSDTK 162 (293)
T ss_dssp HHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH--------------------HHHHHHHHHHHHHHCCTSSSS--E
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH--------------------HHHHHHHHHHHHHHhhhCCCCCcE
Confidence 99999999999999998776555543 455544 433111122222223322 112
Q ss_pred Cccc-eEEEeeCCCCceeeecccc
Q 022546 146 VAEV-NVPVIGGHAGVTILPLFSQ 168 (295)
Q Consensus 146 ~~~v-~~~viG~hg~~~~vp~~s~ 168 (295)
...| .+-|+|..| +.+|.|.+
T Consensus 163 f~~VRFGNVlgS~G--SVip~F~~ 184 (293)
T PF02719_consen 163 FSSVRFGNVLGSRG--SVIPLFKK 184 (293)
T ss_dssp EEEEEE-EETTGTT--SCHHHHHH
T ss_pred EEEEEecceecCCC--cHHHHHHH
Confidence 2334 378889888 57898754
No 59
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=60.44 E-value=39 Score=29.18 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=27.5
Q ss_pred hhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCc
Q 022546 44 GKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPV 101 (295)
Q Consensus 44 ~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 101 (295)
++|.+.||+||++- | . +.+.++.+.++..-.+-+||-.|||.
T Consensus 55 ~dA~~~aDVVvLAV--P-------~-------~a~~~v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 55 EDAAALADVVVLAV--P-------F-------EAIPDVLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred HHHHhcCCEEEEec--c-------H-------HHHHhHHHHHHHHhCCeEEEecCCCc
Confidence 58999999999974 2 1 22333444444432366889999995
No 60
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=60.36 E-value=28 Score=31.90 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=41.3
Q ss_pred CCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCC
Q 022546 40 EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTY 118 (295)
Q Consensus 40 t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~ 118 (295)
++|+ .+++|||+||=.. ..|..+=+++-..+.+++ |++ |+.||-..+--.-+ ...+ -
T Consensus 74 ~~~~-~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~i---a~~~--~ 131 (307)
T COG1250 74 TTDL-AALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITEL---AEAL--K 131 (307)
T ss_pred cCch-hHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHH---HHHh--C
Confidence 4554 5899999988753 334455566667777776 676 45788877544332 2333 2
Q ss_pred CCCCeeec
Q 022546 119 DEKKLFGV 126 (295)
Q Consensus 119 ~~~kviG~ 126 (295)
.|+|++|+
T Consensus 132 rper~iG~ 139 (307)
T COG1250 132 RPERFIGL 139 (307)
T ss_pred CchhEEEE
Confidence 35678887
No 61
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=59.54 E-value=15 Score=33.41 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=35.1
Q ss_pred CCcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCC
Q 022546 5 PLVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58 (295)
Q Consensus 5 ~~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g 58 (295)
..+++|.++|.+. +...+.++.+.. ...+... ++.++++++||+|+.+-.
T Consensus 140 ~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT~ 191 (301)
T PRK06407 140 YNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSITN 191 (301)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEecC
Confidence 3589999999986 566666666532 2345543 356899999999998543
No 62
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=58.41 E-value=11 Score=30.69 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=40.0
Q ss_pred CeEEEEeCCCchhHHHhhhCCC--------CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 022546 8 SSLSLYDIANTPGVAADVSHIN--------SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVK 79 (295)
Q Consensus 8 ~ei~L~D~~~~~~~~~Dl~~~~--------~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~ 79 (295)
.++.|++.++..-..+.-.+.. .+..+.. |+|+++++++||+||++- | ...++
T Consensus 23 ~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Iiiav--P--------------s~~~~ 83 (157)
T PF01210_consen 23 HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIIIIAV--P--------------SQAHR 83 (157)
T ss_dssp EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEEE-S-----------------GGGHH
T ss_pred CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEEecc--c--------------HHHHH
Confidence 6889999875211122222221 1123443 468889999999999963 2 24456
Q ss_pred HHHHHHHhhC-CCeEEEEec
Q 022546 80 SLCTAIANYC-PHALVNMIS 98 (295)
Q Consensus 80 ~i~~~i~~~~-p~a~viv~t 98 (295)
++++.+..+- ++..+++++
T Consensus 84 ~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 84 EVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp HHHHHHTTTSHTT-EEEETS
T ss_pred HHHHHHhhccCCCCEEEEec
Confidence 6777777776 344555544
No 63
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=58.35 E-value=39 Score=26.74 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=32.7
Q ss_pred CCCcEEEEcCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 48 EGSDVVIIPAGVPR-KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 48 ~daDiVvi~~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
.+.|+|++..|..- ..+. .. ....+-++.+++.+++.+|++.+++.+-|
T Consensus 39 ~~pd~vvi~~G~ND~~~~~-~~---~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 88 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNR-DP---DTAPDRLRALIDQMRAANPDVKIIVATLI 88 (157)
T ss_pred CCCCEEEEeccCcccccCC-CH---HHHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 57899999776542 2222 22 33445677888888888999988876543
No 64
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=58.20 E-value=12 Score=31.55 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=37.9
Q ss_pred eEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCccchHHHHH
Q 022546 33 QVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMT-RDDLFNINAGIVKSLCTAIANYC-PHALVNMI-SNPVNSTVPIAA 109 (295)
Q Consensus 33 ~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~~~ 109 (295)
+++. ++|..+++++||+++++.+.|...+.+ .+ ..+.+.++.|.++. ++.+|++= |=|....-.++.
T Consensus 63 ~l~~---t~~~~~ai~~adv~~I~VpTP~~~~~~~Dl-------s~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~ 132 (185)
T PF03721_consen 63 RLRA---TTDIEEAIKDADVVFICVPTPSDEDGSPDL-------SYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLK 132 (185)
T ss_dssp SEEE---ESEHHHHHHH-SEEEE----EBETTTSBET-------HHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHH
T ss_pred cchh---hhhhhhhhhccceEEEecCCCccccCCccH-------HHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhh
Confidence 4554 357788899999999998877655322 23 23333444444443 34443333 667777764444
Q ss_pred HHHHHhC
Q 022546 110 EVFKKAG 116 (295)
Q Consensus 110 ~~~k~sg 116 (295)
.+.+..+
T Consensus 133 ~ile~~~ 139 (185)
T PF03721_consen 133 PILEKRS 139 (185)
T ss_dssp HHHHHHC
T ss_pred hhhhhhc
Confidence 4444444
No 65
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=57.86 E-value=93 Score=31.03 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=66.5
Q ss_pred CcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCC----CchhhhcCC--CcEEEEcCCCCCCCCCC--HHHHHHHHH
Q 022546 6 LVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGE----EQLGKALEG--SDVVIIPAGVPRKPGMT--RDDLFNINA 75 (295)
Q Consensus 6 ~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t----~d~~~al~d--aDiVvi~~g~~~~~g~~--r~~~~~~n~ 75 (295)
..++|+++|.++ ...+-.+|.+.-...+++.+.++ +-...++++ .|+|+=+|....-|=++ =.+-...|+
T Consensus 274 ~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV 353 (588)
T COG1086 274 NPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNV 353 (588)
T ss_pred CCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhh
Confidence 578999999988 34455666653212333333222 234678888 99999988766555443 477889999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEe----cCCccch
Q 022546 76 GIVKSLCTAIANYCPHALVNMI----SNPVNST 104 (295)
Q Consensus 76 ~i~~~i~~~i~~~~p~a~viv~----tNP~d~~ 104 (295)
-=-+.++++..+++=+.+|++- .||+|+|
T Consensus 354 ~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm 386 (588)
T COG1086 354 LGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM 386 (588)
T ss_pred HhHHHHHHHHHHhCCCEEEEEecCcccCCchHh
Confidence 9999999999998865555543 3566555
No 66
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.64 E-value=31 Score=31.64 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=39.6
Q ss_pred eEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHH
Q 022546 33 QVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEV 111 (295)
Q Consensus 33 ~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~ 111 (295)
+++... +.|+++++++||+||-+.- .+..+=+.+-..+.+.+ |++++ .||-..+...-+
T Consensus 64 ~i~~~~-~~~~~~a~~~aD~ViEav~--------------E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~l--- 123 (314)
T PRK08269 64 RIAVVA-RDGAADALADADLVFEAVP--------------EVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDL--- 123 (314)
T ss_pred CeEeec-CcchHHHhccCCEEEECCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHH---
Confidence 455432 2346788999999998742 11222233333366665 66655 677666554332
Q ss_pred HHHhCCCCCCCeeec
Q 022546 112 FKKAGTYDEKKLFGV 126 (295)
Q Consensus 112 ~k~sg~~~~~kviG~ 126 (295)
..... .+.|++|+
T Consensus 124 a~~~~--~p~r~~g~ 136 (314)
T PRK08269 124 QRHVA--HPERFLNA 136 (314)
T ss_pred HhhcC--CcccEEEE
Confidence 23332 24567776
No 67
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=57.53 E-value=40 Score=27.68 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCCcEEEEcCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 48 EGSDVVIIPAGVPR-KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 48 ~daDiVvi~~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
...|+|++..|..- ..+.+ .+.+. +-+.++++.+++..|++.|+++|.|
T Consensus 66 ~~pd~Vii~~G~ND~~~~~~-~~~~~---~~l~~li~~i~~~~~~~~iiv~~~p 115 (191)
T cd01836 66 TRFDVAVISIGVNDVTHLTS-IARWR---KQLAELVDALRAKFPGARVVVTAVP 115 (191)
T ss_pred CCCCEEEEEecccCcCCCCC-HHHHH---HHHHHHHHHHHhhCCCCEEEEECCC
Confidence 47899999766432 22222 33333 4456777777777899988888865
No 68
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=56.86 E-value=14 Score=34.17 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=34.5
Q ss_pred cCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcC
Q 022546 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPA 57 (295)
Q Consensus 7 ~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~ 57 (295)
+.+|+++|.++ ++..+.++...-. ..+... ++.++++++||||+.+-
T Consensus 155 ~~~I~i~~r~~~~~e~~a~~l~~~~~-~~v~a~---~s~~~av~~aDiIvt~T 203 (330)
T COG2423 155 IREIRVYSRDPEAAEAFAARLRKRGG-EAVGAA---DSAEEAVEGADIVVTAT 203 (330)
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhhcC-ccceec---cCHHHHhhcCCEEEEec
Confidence 78999999987 6677777776532 234432 35689999999999853
No 69
>PRK06199 ornithine cyclodeaminase; Validated
Probab=54.30 E-value=24 Score=33.28 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=35.2
Q ss_pred CCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcC
Q 022546 4 DPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPA 57 (295)
Q Consensus 4 ~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~ 57 (295)
.+.+++|.++|.+. +...+.++.+.... ..+... ++.++++++||+|+.+-
T Consensus 178 ~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~---~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 178 CPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVV---DSIEEVVRGSDIVTYCN 231 (379)
T ss_pred cCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe---CCHHHHHcCCCEEEEcc
Confidence 34589999999987 56667777653211 135543 45689999999999743
No 70
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=54.06 E-value=45 Score=27.26 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCCCC-CC-C---CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCc
Q 022546 49 GSDVVIIPAGVPRK-PG-M---TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPV 101 (295)
Q Consensus 49 daDiVvi~~g~~~~-~g-~---~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 101 (295)
..|+||+..|..-. .+ . ...+.+..| ++.+++.+++..|++.++++|.|-
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~ii~~t~~~ 117 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKEN---LRKIVSHLKSLSPKTKVILITPPP 117 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHH---HHHHHHHHHhhCCCCeEEEeCCCC
Confidence 79999997764321 11 1 234444544 667777888777888888887654
No 71
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=53.78 E-value=52 Score=25.40 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=40.4
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecC-CccchHHHHHHHHHHhCCCCCCCeee
Q 022546 48 EGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISN-PVNSTVPIAAEVFKKAGTYDEKKLFG 125 (295)
Q Consensus 48 ~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tN-P~d~~t~~~~~~~k~sg~~~~~kviG 125 (295)
.++|+|.++... ....+.++++++.+++.+| +..+++-++ |.+... .++..| + ..+|+
T Consensus 49 ~~~d~V~iS~~~------------~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~-----~~~~~G-~--d~~~~ 108 (122)
T cd02071 49 EDVDVIGLSSLS------------GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYE-----LLKEMG-V--AEIFG 108 (122)
T ss_pred cCCCEEEEcccc------------hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHH-----HHHHCC-C--CEEEC
Confidence 588999997632 3445677899999999877 444555544 433332 246777 6 56888
Q ss_pred c-chhh
Q 022546 126 V-TTLD 130 (295)
Q Consensus 126 ~-t~ld 130 (295)
. |..+
T Consensus 109 ~~~~~~ 114 (122)
T cd02071 109 PGTSIE 114 (122)
T ss_pred CCCCHH
Confidence 8 5443
No 72
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=52.74 E-value=33 Score=30.95 Aligned_cols=47 Identities=19% Similarity=0.354 Sum_probs=31.2
Q ss_pred cCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEc
Q 022546 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIP 56 (295)
Q Consensus 7 ~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~ 56 (295)
+++|+++|++. +++.+.++.+......+.. .++.+++++++|+||.+
T Consensus 151 ~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~---~~~~~~~~~~aDiVIna 199 (284)
T PRK12549 151 VERLTIFDVDPARAAALADELNARFPAARATA---GSDLAAALAAADGLVHA 199 (284)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhCCCeEEEe---ccchHhhhCCCCEEEEC
Confidence 67899999976 6677777765432222221 23345678999999997
No 73
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=52.57 E-value=32 Score=30.62 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=48.1
Q ss_pred CchhhhcC--CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcc---chHHHHHHHHHHh
Q 022546 41 EQLGKALE--GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVN---STVPIAAEVFKKA 115 (295)
Q Consensus 41 ~d~~~al~--daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d---~~t~~~~~~~k~s 115 (295)
.++.++++ ++|++|=+.+.+. -+=+++.+.|.+++++.+|+-.|||.. +..+- +++.+
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g--------------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~---a~~~t 158 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGG--------------AFTPEVIRAXAEINERPVIFALSNPTSKAECTAEE---AYTAT 158 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCC--------------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHH---HHhhc
Confidence 46889999 9999888766442 122467778888999999999999985 45443 35654
Q ss_pred CCCCCCCeeecc
Q 022546 116 GTYDEKKLFGVT 127 (295)
Q Consensus 116 g~~~~~kviG~t 127 (295)
. .+.+|++.
T Consensus 159 ~---G~ai~AtG 167 (254)
T cd00762 159 E---GRAIFASG 167 (254)
T ss_pred C---CCEEEEEC
Confidence 2 36788883
No 74
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=51.93 E-value=16 Score=26.41 Aligned_cols=19 Identities=42% Similarity=0.730 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 022546 265 PLSDYEKQGLESLKPELKA 283 (295)
Q Consensus 265 ~L~~~E~~~l~~s~~~l~~ 283 (295)
+||++||..|++..++|++
T Consensus 2 ~LSe~E~r~L~eiEr~L~~ 20 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRA 20 (82)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 7999999999999888875
No 75
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=51.64 E-value=22 Score=31.36 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=34.3
Q ss_pred cCeEEEEeCCC-chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCC
Q 022546 7 VSSLSLYDIAN-TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPR 61 (295)
Q Consensus 7 ~~ei~L~D~~~-~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~ 61 (295)
.+||+||+... ...++.-+...+.+ -..+++ +++.+|+.|+|+|+-|.+.++
T Consensus 30 l~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~---~tL~eAl~d~~~v~aTtar~r 84 (242)
T COG0565 30 LSELRLVNPRAGLDEEARALAAGARDILENAKIV---DTLEEALADCDLVVATTARSR 84 (242)
T ss_pred cceEEEECCCCCCCHHHHHHhccchhhhccCeee---cCHHHHhcCCCEEEEeccccC
Confidence 57899999866 45565555543321 122333 457899999999999875443
No 76
>PRK07589 ornithine cyclodeaminase; Validated
Probab=51.47 E-value=28 Score=32.46 Aligned_cols=47 Identities=21% Similarity=0.394 Sum_probs=33.7
Q ss_pred CcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcC
Q 022546 6 LVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPA 57 (295)
Q Consensus 6 ~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~ 57 (295)
-+.+|.++|.+. ++..+.++.+. ...+... ++.++++++||+|+.+.
T Consensus 153 ~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 153 GIEEIRLYDIDPAATAKLARNLAGP--GLRIVAC---RSVAEAVEGADIITTVT 201 (346)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhc--CCcEEEe---CCHHHHHhcCCEEEEec
Confidence 478999999976 56666667652 2344442 45789999999999854
No 77
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.26 E-value=33 Score=27.99 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=33.5
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCc
Q 022546 48 EGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPV 101 (295)
Q Consensus 48 ~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 101 (295)
...|+||+..|...-... . .-..-++++++.+++.+|++.+++++.|.
T Consensus 56 ~~pd~vii~~G~ND~~~~---~---~~~~~~~~~i~~i~~~~p~~~iil~~~~~ 103 (177)
T cd01844 56 VPADLYIIDCGPNIVGAE---A---MVRERLGPLVKGLRETHPDTPILLVSPRY 103 (177)
T ss_pred cCCCEEEEEeccCCCccH---H---HHHHHHHHHHHHHHHHCcCCCEEEEecCC
Confidence 378999997665421111 1 33566788888999999999888888664
No 78
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=51.18 E-value=37 Score=27.26 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=33.9
Q ss_pred cCeEEEEeCCC--chhHHHhhhCCCCCCeEEEe-eCCCchhhhcCCCcEEEEcCCCC
Q 022546 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVEGY-AGEEQLGKALEGSDVVIIPAGVP 60 (295)
Q Consensus 7 ~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~-~~t~d~~~al~daDiVvi~~g~~ 60 (295)
-.+++.+.... .+..+.-|... ...+... +.|.|+++++++||+||.+.|.+
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~--gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRD--GATVYSCDWKTIQLQSKVHDADVVVVGSPKP 82 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEeCCCCcCHHHHHhhCCEEEEecCCC
Confidence 35788888766 34445555533 2344443 23447788999999999987765
No 79
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=50.65 E-value=23 Score=32.66 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=32.8
Q ss_pred CCcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcC
Q 022546 5 PLVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPA 57 (295)
Q Consensus 5 ~~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~ 57 (295)
..+.++.++|.+. +...+.++.+. ...+... .+.++++++||+|+++.
T Consensus 151 ~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~~---~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 151 FDLEEVSVYCRTPSTREKFALRASDY--EVPVRAA---TDPREAVEGCDILVTTT 200 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEEe---CCHHHHhccCCEEEEec
Confidence 4579999999986 44555555532 2234433 35689999999999854
No 80
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=47.84 E-value=16 Score=29.84 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=31.7
Q ss_pred CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCC
Q 022546 32 AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANY-CPHALVNMISNP 100 (295)
Q Consensus 32 ~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 100 (295)
..+..+ +|+++++++||+|....=..... .+|......-.+ ..+-..+.+. .|+++++ =.=|
T Consensus 59 ~~i~~~---~~~~e~l~~aDvvy~~~~~s~~~-~e~~~~~~~~~~--y~v~~~~m~~a~~~~i~m-H~LP 121 (158)
T PF00185_consen 59 GKITIT---DDIEEALKGADVVYTDRWQSMGD-KERFKRLEKFKP--YQVTEELMERAKPDAIFM-HPLP 121 (158)
T ss_dssp TEEEEE---SSHHHHHTT-SEEEEESSSCTTS-GGHHHHHHHHGG--GSBSHHHHHTSSTT-EEE-ESSS
T ss_pred CCeEEE---eCHHHhcCCCCEEEEcCcccccc-hHHHHHHHHhcC--CccCHHHHHhcCCCcEEE-eCCC
Confidence 355653 57789999999988864322111 345533333333 3333444443 4677555 3444
No 81
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=46.80 E-value=60 Score=26.39 Aligned_cols=62 Identities=10% Similarity=0.227 Sum_probs=42.6
Q ss_pred CeEEEEecCCccchHHHHHHHHHHhCCCCCC----Ceeec-c--hhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546 91 HALVNMISNPVNSTVPIAAEVFKKAGTYDEK----KLFGV-T--TLDVVRAKTFYAGKVNVPVAEVNVPVIGG 156 (295)
Q Consensus 91 ~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~----kviG~-t--~ld~~R~~~~la~~l~v~~~~v~~~viG~ 156 (295)
+-.|++++-||.+-+--. +++.. +... -+||+ | ..+...++.++.+++++++.+|.-+-+-+
T Consensus 4 ~~kV~~vG~PCqi~al~~--~~~~~--~~~~~~~~~~igl~C~g~~s~~~~~~~l~~~~~~~~~~v~~~~~r~ 72 (161)
T PF04432_consen 4 GKKVAFVGTPCQIAALRK--LLKRN--YENRDEIVYTIGLFCHGVPSPKKLRKYLEEQLGIKPDDVKKFDFRD 72 (161)
T ss_pred CCEEEEEeccHHHHHHHH--HHhhC--cccCcceEEEEeEECCCCCCHHHHHHHHHHHhCCChhheeEEEEeC
Confidence 347899999999876432 23322 2222 57888 7 46667778999999999999985544443
No 82
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=46.43 E-value=88 Score=29.66 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEecC--CccchHHHHHHHHHHhCCCCCCCeeec-ch--hhHHHHHHHHHhhcCCCCc
Q 022546 73 INAGIVKSLCTAIANYCPHALVNMISN--PVNSTVPIAAEVFKKAGTYDEKKLFGV-TT--LDVVRAKTFYAGKVNVPVA 147 (295)
Q Consensus 73 ~n~~i~~~i~~~i~~~~p~a~viv~tN--P~d~~t~~~~~~~k~sg~~~~~kviG~-t~--ld~~R~~~~la~~l~v~~~ 147 (295)
-+...++.+++.+++.+.+..+++++- |.++++.+ .+.+| =++|+ |. --.-..+..|...+++.+.
T Consensus 259 ~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i----~~a~~-----~vvGsPT~~~~~~p~i~~~l~~v~~~~~~ 329 (388)
T COG0426 259 NTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEI----LDAKG-----LVVGSPTINGGAHPPIQTALGYVLALAPK 329 (388)
T ss_pred CHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHH----hhcce-----EEEecCcccCCCCchHHHHHHHHHhccCc
Confidence 345678889999999999988877743 55566543 56555 48999 63 1124568889999999998
Q ss_pred cceEEEeeCCCC
Q 022546 148 EVNVPVIGGHAG 159 (295)
Q Consensus 148 ~v~~~viG~hg~ 159 (295)
+=.+-+.|.+|-
T Consensus 330 ~k~~~vfgS~GW 341 (388)
T COG0426 330 NKLAGVFGSYGW 341 (388)
T ss_pred CceEEEEeccCC
Confidence 888999998874
No 83
>PRK06823 ornithine cyclodeaminase; Validated
Probab=46.22 E-value=43 Score=30.71 Aligned_cols=48 Identities=4% Similarity=0.021 Sum_probs=31.8
Q ss_pred CcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCC
Q 022546 6 LVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58 (295)
Q Consensus 6 ~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g 58 (295)
-+++|.++|.+. ++..+..+.+. ...+... ++.++++++||+|+.+-+
T Consensus 152 ~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT~ 201 (315)
T PRK06823 152 DCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTTP 201 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEecC
Confidence 469999999986 44444444432 2344433 356899999999998543
No 84
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=45.49 E-value=43 Score=28.04 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=28.2
Q ss_pred cCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccc
Q 022546 47 LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNS 103 (295)
Q Consensus 47 l~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~ 103 (295)
+++||.++++-.... +. +..-++...+.+.+++|+.-+|+++|=.|+
T Consensus 76 ~~~ad~illVfD~t~-----~~-----Sf~~~~~w~~~i~~~~~~~piilVGNK~DL 122 (189)
T cd04121 76 SRGAQGIILVYDITN-----RW-----SFDGIDRWIKEIDEHAPGVPKILVGNRLHL 122 (189)
T ss_pred hcCCCEEEEEEECcC-----HH-----HHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 468887777543221 11 112223455555666788888888888885
No 85
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.05 E-value=78 Score=25.35 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=31.4
Q ss_pred CCCcEEEEcCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 48 EGSDVVIIPAGVPR-KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 48 ~daDiVvi~~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
...|+|++..|..- ..+.+ .+.+. +-+.++...+++..|++.|++++-|
T Consensus 47 ~~pd~vvl~~G~ND~~~~~~-~~~~~---~~l~~li~~~~~~~~~~~vi~~~~~ 96 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGTS-DEDIV---ANYRTILEKLRKHFPNIKIVVQSIL 96 (169)
T ss_pred cCCCEEEEEeeccCCCCCCC-HHHHH---HHHHHHHHHHHHHCCCCeEEEEecC
Confidence 36799999776442 22222 33333 4466777777777888988887654
No 86
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.83 E-value=67 Score=29.02 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=13.6
Q ss_pred CchhhhcCCCcEEEEcC
Q 022546 41 EQLGKALEGSDVVIIPA 57 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~ 57 (295)
+|+.+++++||+||++.
T Consensus 71 ~~~~~~~~~aDlVi~av 87 (311)
T PRK06130 71 AGLAAAVSGADLVIEAV 87 (311)
T ss_pred CCHHHHhccCCEEEEec
Confidence 45667799999999974
No 87
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=43.85 E-value=82 Score=25.32 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 48 EGSDVVIIPAGVPR-KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 48 ~daDiVvi~~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
...|+|++..|..- ..+. ..+.+. .-++++...+++..|++.+++++-|
T Consensus 50 ~~pd~v~i~~G~ND~~~~~-~~~~~~---~~~~~l~~~~~~~~p~~~vi~~~~~ 99 (174)
T cd01841 50 KNPSKVFLFLGTNDIGKEV-SSNQFI---KWYRDIIEQIREEFPNTKIYLLSVL 99 (174)
T ss_pred cCCCEEEEEeccccCCCCC-CHHHHH---HHHHHHHHHHHHHCCCCEEEEEeeC
Confidence 46788888766542 2222 223333 4466777788888899888877744
No 88
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=43.81 E-value=27 Score=36.20 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=35.4
Q ss_pred hhcCCCcEEEEcCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHhhCCCeEEEEe-cCCccch
Q 022546 45 KALEGSDVVIIPAGVPR---KPGMTRDDL--FNINAGIVKSLCTAIANYCPHALVNMI-SNPVNST 104 (295)
Q Consensus 45 ~al~daDiVvi~~g~~~---~~g~~r~~~--~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~d~~ 104 (295)
++.++||+||++.|... .+|.+|.++ -.... ++.+.+.+.+|+.+++++ ++|.++-
T Consensus 497 ~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~----~Li~~v~~~~~~vVvVl~~g~P~~l~ 558 (765)
T PRK15098 497 QAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQR----DLIAALKATGKPLVLVLMNGRPLALV 558 (765)
T ss_pred HHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHH----HHHHHHHHhCcCEEEEEeCCceeecc
Confidence 45689999999877542 334455432 22333 444555566788777766 9999873
No 89
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=43.60 E-value=44 Score=24.98 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=32.9
Q ss_pred EeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 022546 235 FVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278 (295)
Q Consensus 235 ~~~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~ 278 (295)
+++|+ .+.|+++|-+=..+|..+-+.. |++.+-++.|+.++
T Consensus 36 Vieg~--~GlFVaMPs~k~~~g~y~DI~~-Pit~e~Re~i~~aV 76 (94)
T PRK13259 36 VIEGN--NGLFIAMPSKRTPDGEFRDIAH-PINSDTREKIQDAI 76 (94)
T ss_pred EEECC--CCeEEECcCcCCCCCcEEEEEc-cCCHHHHHHHHHHH
Confidence 34553 5899999998888887776666 89999999998864
No 90
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=42.81 E-value=1.7e+02 Score=26.26 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=48.0
Q ss_pred CCCcEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546 48 EGSDVVIIPAGVPR--KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125 (295)
Q Consensus 48 ~daDiVvi~~g~~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG 125 (295)
.+||+++.--|... ..|.....-+..-+..+.++.+...+.+|+.+++..+-|...-..+ .++++.+.. -+=++|
T Consensus 169 AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~-~~~l~~t~~--~~Gf~G 245 (268)
T PF09370_consen 169 AGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDA-QYVLRNTKG--IHGFIG 245 (268)
T ss_dssp HT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHH-HHHHHH-TT--EEEEEE
T ss_pred cCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHhcCCC--CCEEec
Confidence 58999999444321 1233333355677889999999999999999999999887765544 233455421 133555
Q ss_pred c-c--hhhHHHHHHHHH
Q 022546 126 V-T--TLDVVRAKTFYA 139 (295)
Q Consensus 126 ~-t--~ld~~R~~~~la 139 (295)
- + .|++-|+-+...
T Consensus 246 ~Ss~ERlP~E~ai~~~~ 262 (268)
T PF09370_consen 246 ASSMERLPVERAITETV 262 (268)
T ss_dssp STTTTHHHHHHHHHHHH
T ss_pred ccchhhccHHHHHHHHH
Confidence 4 2 355555544333
No 91
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.67 E-value=1e+02 Score=25.08 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 49 GSDVVIIPAGVPRK-PG-MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 49 daDiVvi~~g~~~~-~g-~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
..|+|++..|..-. .+ ....+.+.. -++.+++.+++.+|++.++++|.|
T Consensus 67 ~pd~Vii~~G~ND~~~~~~~~~~~~~~---~l~~li~~i~~~~~~~~iil~t~~ 117 (188)
T cd01827 67 NPNIVIIKLGTNDAKPQNWKYKDDFKK---DYETMIDSFQALPSKPKIYICYPI 117 (188)
T ss_pred CCCEEEEEcccCCCCCCCCccHHHHHH---HHHHHHHHHHHHCCCCeEEEEeCC
Confidence 67999997775421 11 122333343 366778888888899877777654
No 92
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=41.57 E-value=52 Score=27.26 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=29.5
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccch
Q 022546 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNST 104 (295)
Q Consensus 46 al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~ 104 (295)
.+++||.++++-.... +. -+ .+ +.....+.+++++|+..+++++|=+|+-
T Consensus 73 ~~~~ad~~ilvyDit~-----~~-Sf-~~--~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 73 SYPDSDAVLICFDISR-----PE-TL-DS--VLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred hcCCCCEEEEEEECCC-----HH-HH-HH--HHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 3677888777643321 21 11 11 1234555566677888888899988853
No 93
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=41.38 E-value=1e+02 Score=24.77 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=31.6
Q ss_pred CcEEEEcCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCc
Q 022546 50 SDVVIIPAGVPRKP-G--MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPV 101 (295)
Q Consensus 50 aDiVvi~~g~~~~~-g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 101 (295)
.|+||+..|..-.. + .+.. . -..-++++.+.+++..|++.+++.+.|.
T Consensus 56 pd~vii~~G~ND~~~~~~~~~~-~---~~~~~~~li~~i~~~~p~~~i~~~~~~~ 106 (169)
T cd01831 56 PDLVVINLGTNDFSTGNNPPGE-D---FTNAYVEFIEELRKRYPDAPIVLMLGPM 106 (169)
T ss_pred CCEEEEECCcCCCCCCCCCCHH-H---HHHHHHHHHHHHHHHCCCCeEEEEecCc
Confidence 89999987754321 1 1222 2 2345667778888888999887776654
No 94
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=41.24 E-value=1.6e+02 Score=27.85 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=33.5
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-cCCccchHHHH
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMI-SNPVNSTVPIA 108 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~d~~t~~~ 108 (295)
.+..++.++||+|+++...+........ +...+++.++.|.+..|+.++|+- |=|.+..-.+.
T Consensus 65 ~~~~~~~~~ad~vii~Vpt~~~~k~~~~-----dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~ 128 (388)
T PRK15057 65 LDKNEAYRDADYVIIATPTDYDPKTNYF-----NTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMH 128 (388)
T ss_pred cchhhhhcCCCEEEEeCCCCCccCCCCc-----ChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHH
Confidence 4556788999999998665532211111 123333333444443455544433 66766665554
No 95
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=40.80 E-value=34 Score=27.79 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=27.5
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 022546 45 KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAN 87 (295)
Q Consensus 45 ~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~ 87 (295)
+.+.++|+|++-+|.|. .....+.+|.....+|.+.+++
T Consensus 3 ~~~~~~D~i~lpGg~pe----~~~~~l~~~~~~~~~I~~~~~~ 41 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPE----LFALELSRNRGLKEAIREAAEA 41 (158)
T ss_pred CCCCCCCEEEECCCcHH----HHHHHHHHHhCHHHHHHHHHHc
Confidence 66899999999988763 3445666777766666665554
No 96
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.79 E-value=98 Score=28.02 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=38.0
Q ss_pred hhHHHhhhCCCCCCeEEEee--CCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh--CCCeEE
Q 022546 19 PGVAADVSHINSPAQVEGYA--GEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANY--CPHALV 94 (295)
Q Consensus 19 ~~~~~Dl~~~~~~~~v~~~~--~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~--~p~a~v 94 (295)
.+.+..|.+..+ .|.... .+.++.+++++||+|+++.- ...++++++.+..+ .++.++
T Consensus 17 ~~lA~~l~~~G~--~V~~~~r~~~~~~~~~~~~advvi~~vp----------------~~~~~~v~~~l~~~~~~~~~iv 78 (308)
T PRK14619 17 STLAGLASANGH--RVRVWSRRSGLSLAAVLADADVIVSAVS----------------MKGVRPVAEQVQALNLPPETII 78 (308)
T ss_pred HHHHHHHHHCCC--EEEEEeCCCCCCHHHHHhcCCEEEEECC----------------hHHHHHHHHHHHHhcCCCCcEE
Confidence 445555655432 444432 23467788999999999742 12344445556543 467788
Q ss_pred EEecCC
Q 022546 95 NMISNP 100 (295)
Q Consensus 95 iv~tNP 100 (295)
+..|+.
T Consensus 79 i~~s~g 84 (308)
T PRK14619 79 VTATKG 84 (308)
T ss_pred EEeCCc
Confidence 888873
No 97
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.40 E-value=1.5e+02 Score=27.88 Aligned_cols=73 Identities=16% Similarity=0.289 Sum_probs=42.9
Q ss_pred CeEEEEeCCC---chhHHHhhhCC--C--------CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHH
Q 022546 8 SSLSLYDIAN---TPGVAADVSHI--N--------SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNIN 74 (295)
Q Consensus 8 ~ei~L~D~~~---~~~~~~Dl~~~--~--------~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n 74 (295)
.++.|+..++ -...+.++++. . .+..+.. ++|+.+++++||+||++- |
T Consensus 42 ~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~---tsdl~eav~~aDiIvlAV--P-------------- 102 (365)
T PTZ00345 42 NEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVA---VSDLKEAVEDADLLIFVI--P-------------- 102 (365)
T ss_pred CeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEE---ecCHHHHHhcCCEEEEEc--C--------------
Confidence 4788888765 22445556532 1 1234554 356778999999988863 2
Q ss_pred HHHHHHHHHHHHh--h-CCCeEEEEecC
Q 022546 75 AGIVKSLCTAIAN--Y-CPHALVNMISN 99 (295)
Q Consensus 75 ~~i~~~i~~~i~~--~-~p~a~viv~tN 99 (295)
...++++++.++. + .++..+|.++-
T Consensus 103 sq~l~~vl~~l~~~~~l~~~~~iIS~aK 130 (365)
T PTZ00345 103 HQFLESVLSQIKENNNLKKHARAISLTK 130 (365)
T ss_pred hHHHHHHHHHhccccccCCCCEEEEEeC
Confidence 2455666666665 3 23445665543
No 98
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=40.37 E-value=31 Score=28.25 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=32.2
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 51 DVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 51 DiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
|.||.++|..++.|....-+-..+.+++....+.+.+...+-++++.+++
T Consensus 1 ~~iIla~G~s~R~g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~ 50 (188)
T TIGR03310 1 DAIILAAGLSSRMGQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHE 50 (188)
T ss_pred CeEEECCCCcccCCCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCc
Confidence 56888888776665433222335678888888888876666555554544
No 99
>PRK09458 pspB phage shock protein B; Provisional
Probab=40.16 E-value=60 Score=23.16 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=23.8
Q ss_pred CCCHHHHHHHH---HHHHHHHHHHHHHhhhhhc
Q 022546 265 PLSDYEKQGLE---SLKPELKASIEKGIQFANR 294 (295)
Q Consensus 265 ~L~~~E~~~l~---~s~~~l~~~~~~~~~~~~~ 294 (295)
.||++|+++|+ +.|+.+++.++.-.++++.
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 58999977777 6788899888887777763
No 100
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=40.16 E-value=49 Score=29.98 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=32.3
Q ss_pred CCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHH
Q 022546 40 EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIA 108 (295)
Q Consensus 40 t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~ 108 (295)
++| .||.+++|++|+-- ..| ..+..|++++++.+.+ +|+ ++|-|-+=+..+
T Consensus 133 sDD-~EAvk~aei~I~ft----PfG-------~~t~~Iikki~~~ipE---gAI---I~~tCTIpt~~l 183 (342)
T PRK00961 133 TDD-REAVADADIVITWL----PKG-------GMQPDIIEKFADDIKE---GAI---VTHACTIPTTKF 183 (342)
T ss_pred cCc-HHHhcCCCEEEEec----CCC-------CCchHHHHHHHhhCCC---CCE---EeccccCCHHHH
Confidence 356 58999999999831 111 2235788888887754 333 567666555544
No 101
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=40.06 E-value=84 Score=32.32 Aligned_cols=69 Identities=17% Similarity=0.349 Sum_probs=43.4
Q ss_pred eEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHH
Q 022546 33 QVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEV 111 (295)
Q Consensus 33 ~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~ 111 (295)
+++. ++|+ ++++|||+||=+. ..|.++=+++-..+.+++ |++ |+.||-..+-..-+
T Consensus 377 ~i~~---~~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~l--- 433 (708)
T PRK11154 377 LISG---TTDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQI--- 433 (708)
T ss_pred cEEE---eCCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHH---
Confidence 4554 3565 7899999988653 344556667777788887 665 44688777444222
Q ss_pred HHHhCCCCCCCeeec
Q 022546 112 FKKAGTYDEKKLFGV 126 (295)
Q Consensus 112 ~k~sg~~~~~kviG~ 126 (295)
..... .+.|++|+
T Consensus 434 a~~~~--~p~r~ig~ 446 (708)
T PRK11154 434 AAAAA--RPEQVIGL 446 (708)
T ss_pred HHhcC--cccceEEE
Confidence 23333 35678887
No 102
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=39.34 E-value=27 Score=25.32 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=28.4
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
+..++++.||+||++.-. ..+.++++.+....++..+|-++||
T Consensus 54 ~~~~~~~~advvilav~p----------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 54 DNEEAAQEADVVILAVKP----------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp EHHHHHHHTSEEEE-S-G----------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred ChHHhhccCCEEEEEECH----------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 347889999999997521 2344555555445577888888876
No 103
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=39.31 E-value=1.1e+02 Score=27.29 Aligned_cols=66 Identities=9% Similarity=0.149 Sum_probs=39.6
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCccchHHHHHHHHHHhCCCCC
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANY-CPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~ 120 (295)
|..++.+++|+||++.... .+.++.+.+..+ .++..++.+.|..+....+ .+. +|+
T Consensus 61 ~~~~~~~~~d~vilavk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l----~~~---~~~ 117 (305)
T PRK12921 61 DPEELTGPFDLVILAVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQL----EPY---FGR 117 (305)
T ss_pred CHHHccCCCCEEEEEeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHH----HHh---CCc
Confidence 4445568999999975322 123344444443 4677888899998765433 222 677
Q ss_pred CCeee-cchhh
Q 022546 121 KKLFG-VTTLD 130 (295)
Q Consensus 121 ~kviG-~t~ld 130 (295)
+++++ ++...
T Consensus 118 ~~v~~g~~~~~ 128 (305)
T PRK12921 118 ERVLGGVVFIS 128 (305)
T ss_pred ccEEEEEEEEE
Confidence 77775 35443
No 104
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.71 E-value=98 Score=27.64 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.2
Q ss_pred CchhhhcCCCcEEEEcC
Q 022546 41 EQLGKALEGSDVVIIPA 57 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~ 57 (295)
.++.+++++||+|+.+.
T Consensus 73 ~~~~~~~~~aD~Vi~av 89 (288)
T PRK09260 73 LDLKAAVADADLVIEAV 89 (288)
T ss_pred CcHHHhhcCCCEEEEec
Confidence 46678999999999975
No 105
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=38.56 E-value=37 Score=30.64 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=46.3
Q ss_pred CchhhhcC--CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcc---chHHHHHHHHHHh
Q 022546 41 EQLGKALE--GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVN---STVPIAAEVFKKA 115 (295)
Q Consensus 41 ~d~~~al~--daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d---~~t~~~~~~~k~s 115 (295)
.++.++++ ++|++|=+.+.+. - +=+++.+.|.+++++.+|+-.|||.. +..+- +++.+
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g---~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~---a~~~t 157 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGG---A-----------FTEEVVRAMAKSNERPIIFALSNPTSKAECTAED---AYKWT 157 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCC---C-----------CCHHHHHHHHhcCCCCEEEECCCcCCccccCHHH---HHHhh
Confidence 46889999 9999888765432 1 12467778888999999999999974 44433 35544
Q ss_pred CCCCCCCeeec
Q 022546 116 GTYDEKKLFGV 126 (295)
Q Consensus 116 g~~~~~kviG~ 126 (295)
. .+.++++
T Consensus 158 ~---G~ai~AT 165 (279)
T cd05312 158 D---GRALFAS 165 (279)
T ss_pred c---CCEEEEe
Confidence 2 2458887
No 106
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=37.85 E-value=2.1e+02 Score=26.61 Aligned_cols=74 Identities=18% Similarity=0.338 Sum_probs=41.6
Q ss_pred cCeEEEEeCCC---chhHHHhhh--CCC--C------CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHH
Q 022546 7 VSSLSLYDIAN---TPGVAADVS--HIN--S------PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNI 73 (295)
Q Consensus 7 ~~ei~L~D~~~---~~~~~~Dl~--~~~--~------~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~ 73 (295)
..++.|+..++ ....+..++ |.. + +..++. ++|+.+++++||+||++- |
T Consensus 30 ~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl~eal~~ADiIIlAV--P------------- 91 (342)
T TIGR03376 30 EESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDLVEAAKGADILVFVI--P------------- 91 (342)
T ss_pred CceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCHHHHHhcCCEEEEEC--C-------------
Confidence 36899998743 223333333 221 1 223443 357889999999999863 2
Q ss_pred HHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022546 74 NAGIVKSLCTAIANYC-PHALVNMISN 99 (295)
Q Consensus 74 n~~i~~~i~~~i~~~~-p~a~viv~tN 99 (295)
...++++++.+..+- ++..++.++.
T Consensus 92 -s~~i~~vl~~l~~~l~~~~~iVs~tK 117 (342)
T TIGR03376 92 -HQFLEGICKQLKGHVKPNARAISCIK 117 (342)
T ss_pred -hHHHHHHHHHHHhhcCCCCEEEEEeC
Confidence 244455555555442 4445665553
No 107
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=37.58 E-value=1.1e+02 Score=24.45 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 49 GSDVVIIPAGVPR-KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 49 daDiVvi~~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
..|+|++..|... ..+.+ ..+-..-++++++.+++.+|++.+++++.|
T Consensus 50 ~p~~vvi~~G~ND~~~~~~----~~~~~~~~~~lv~~i~~~~~~~~iil~~~~ 98 (171)
T cd04502 50 QPRRVVLYAGDNDLASGRT----PEEVLRDFRELVNRIRAKLPDTPIAIISIK 98 (171)
T ss_pred CCCEEEEEEecCcccCCCC----HHHHHHHHHHHHHHHHHHCCCCcEEEEEec
Confidence 6788888776542 22333 333456678888888888999988888753
No 108
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=37.41 E-value=80 Score=25.55 Aligned_cols=45 Identities=31% Similarity=0.379 Sum_probs=32.8
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMIS 98 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 98 (295)
++.++++++|.|+.+.+.+.+ ....++.+++.+++.+.. .++.+|
T Consensus 53 ~~~~al~~~d~vi~~~~~~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 53 SVKAALKGADAVIHAAGPPPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp HHHHHHTTSSEEEECCHSTTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hhhhhhhhcchhhhhhhhhcc-----------cccccccccccccccccc-cceeee
Confidence 347889999999999875543 177888888888887644 445444
No 109
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=37.23 E-value=55 Score=29.70 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=33.5
Q ss_pred CCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHH
Q 022546 40 EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109 (295)
Q Consensus 40 t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~ 109 (295)
++| .||.+++|++|+-- ..| ..+..|++++++.|.+ +| +++|-|-+=+..++
T Consensus 131 sDD-~EAv~~aei~I~ft----PfG-------~~q~~Iikkii~~lpE---gA---II~~tCTIpt~~ly 182 (340)
T TIGR01723 131 TDD-REAVEDADIIITWL----PKG-------NKQPDIIKKFIDDIPE---GA---IVTHACTIPTTKFA 182 (340)
T ss_pred cCc-HHHhcCCCEEEEEc----CCC-------CCchHHHHHHHhhCCC---CC---EEeccccCChHHHH
Confidence 356 59999999999831 111 2235788888888754 33 35677766665543
No 110
>PRK08618 ornithine cyclodeaminase; Validated
Probab=36.93 E-value=52 Score=30.18 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=32.7
Q ss_pred CCcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCC
Q 022546 5 PLVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58 (295)
Q Consensus 5 ~~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g 58 (295)
.-+++|.++|.++ ++..+.++.+. +...+..+ +|+++++.+||+|+.+-.
T Consensus 150 ~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 150 RDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYVV---NSADEAIEEADIIVTVTN 201 (325)
T ss_pred CCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEccC
Confidence 3468999999976 44555555432 12334433 356789999999998654
No 111
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=36.69 E-value=65 Score=26.48 Aligned_cols=50 Identities=22% Similarity=0.438 Sum_probs=30.2
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccch
Q 022546 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNST 104 (295)
Q Consensus 46 al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~ 104 (295)
-+++||.+|++-.... +..+ . .+++...+.+.+++|+..+++++|=+|+-
T Consensus 69 ~~~~a~~~ilvfdit~-----~~Sf-~---~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 69 CYPDSDAVLICFDISR-----PETL-D---SVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred hcCCCCEEEEEEECCC-----hhhH-H---HHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 3578888777643321 1111 1 12234555667778888888899988863
No 112
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=36.57 E-value=80 Score=26.23 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=28.8
Q ss_pred eEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCcc
Q 022546 33 QVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVN 102 (295)
Q Consensus 33 ~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d 102 (295)
+++. ++|+++ +.|||+||=+.- .+.++=+++-..+.+.+ |+++ +.||-..
T Consensus 66 ~i~~---~~dl~~-~~~adlViEai~--------------E~l~~K~~~~~~l~~~~~~~~i--lasnTSs 116 (180)
T PF02737_consen 66 RISF---TTDLEE-AVDADLVIEAIP--------------EDLELKQELFAELDEICPPDTI--LASNTSS 116 (180)
T ss_dssp TEEE---ESSGGG-GCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSE--EEE--SS
T ss_pred hccc---ccCHHH-Hhhhheehhhcc--------------ccHHHHHHHHHHHHHHhCCCce--EEecCCC
Confidence 4554 356655 559999887541 23455566777788887 6664 4566544
No 113
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=35.53 E-value=74 Score=29.45 Aligned_cols=116 Identities=14% Similarity=0.243 Sum_probs=65.8
Q ss_pred CeEEEEeCCCchhHHHhhhC--CC--------CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546 8 SSLSLYDIANTPGVAADVSH--IN--------SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77 (295)
Q Consensus 8 ~ei~L~D~~~~~~~~~Dl~~--~~--------~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i 77 (295)
.+++|+..++ .++.|+.. .. .++.+. .++|+.+++++||+||+.- | ...
T Consensus 25 ~~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~---at~Dl~~a~~~ad~iv~av--P--------------s~~ 83 (329)
T COG0240 25 HEVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLK---ATTDLAEALDGADIIVIAV--P--------------SQA 83 (329)
T ss_pred CeeEEEecCH--HHHHHHHhcCcCccccCCccCCcccc---cccCHHHHHhcCCEEEEEC--C--------------hHH
Confidence 6778888764 23334443 21 123444 3568999999999999963 2 345
Q ss_pred HHHHHHHHHhh-CCCeEEEEecC-----CccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceE
Q 022546 78 VKSLCTAIANY-CPHALVNMISN-----PVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNV 151 (295)
Q Consensus 78 ~~~i~~~i~~~-~p~a~viv~tN-----P~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~ 151 (295)
++++++.++.+ .++..++.+|. ....++.++ ... +|.++ ++.-+-++ |-..+++.+ ..+
T Consensus 84 ~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii---~e~---l~~~~-~~vLSGPs--~A~EVa~g~------pta 148 (329)
T COG0240 84 LREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEII---EEE---LPDNP-IAVLSGPS--FAKEVAQGL------PTA 148 (329)
T ss_pred HHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHH---HHH---cCCCe-EEEEECcc--HHHHHhcCC------CcE
Confidence 66666666544 36778888764 344555554 222 55555 44422233 334455443 456
Q ss_pred EEeeCCCC
Q 022546 152 PVIGGHAG 159 (295)
Q Consensus 152 ~viG~hg~ 159 (295)
.+++.+..
T Consensus 149 ~~vas~d~ 156 (329)
T COG0240 149 VVVASNDQ 156 (329)
T ss_pred EEEecCCH
Confidence 66665543
No 114
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=35.48 E-value=61 Score=31.88 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=12.3
Q ss_pred CchhhhcCCCcEEEEcC
Q 022546 41 EQLGKALEGSDVVIIPA 57 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~ 57 (295)
.++ +++++||+||-+.
T Consensus 79 ~~~-~~~~~aDlViEav 94 (507)
T PRK08268 79 EAL-ADLADCDLVVEAI 94 (507)
T ss_pred CCH-HHhCCCCEEEEcC
Confidence 354 6789999999864
No 115
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=35.43 E-value=79 Score=22.47 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 022546 265 PLSDYEKQGLESLKPELKASIEKGIQFANRS 295 (295)
Q Consensus 265 ~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~~ 295 (295)
+.++.|+++|..+...+.+-++.-+.+-|.|
T Consensus 2 KVt~~EkeQLS~AID~mnEGLD~fI~lYNeS 32 (84)
T PF11458_consen 2 KVTDQEKEQLSTAIDRMNEGLDTFIQLYNES 32 (84)
T ss_pred CCchHHHHHHHHHHHHHHhhHHHHHHHHccc
Confidence 5789999999999999999888877776643
No 116
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=35.38 E-value=1.6e+02 Score=26.36 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=41.3
Q ss_pred CCeEEEEecCCccchHHHHHHHHHHh-CCCC--CCC---eeec-ch--hhHHHHHHHHHhhcCCCCccceEEEe
Q 022546 90 PHALVNMISNPVNSTVPIAAEVFKKA-GTYD--EKK---LFGV-TT--LDVVRAKTFYAGKVNVPVAEVNVPVI 154 (295)
Q Consensus 90 p~a~viv~tNP~d~~t~~~~~~~k~s-g~~~--~~k---viG~-t~--ld~~R~~~~la~~l~v~~~~v~~~vi 154 (295)
+...|.+++-||.+-+.-- +.++. + +. .++ +||+ |. .+...++.+|.+++|++|.+|..+-+
T Consensus 91 ~~~~va~vGtPCqi~alr~--l~~~~~~-~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~g~~~~~v~~~~~ 161 (275)
T TIGR03289 91 GLEKIGTVGTPCQVMGLRK--AQTYPVG-VRNVVDKIALSIGIYCMENFPYESLKTFINDKCGVTMEQVTKMDI 161 (275)
T ss_pred CCCEEEEEccchHHHHHHH--HHhcccc-ccccccceEEEEeeeCCCCCCHHHHHHHHHHhcCCCHHHccEEEe
Confidence 4678999999999887432 22211 1 11 134 4788 74 44467889999989999988865444
No 117
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=35.15 E-value=1.4e+02 Score=22.25 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=22.1
Q ss_pred cCCCcEEEEcC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022546 47 LEGSDVVIIPA-GVPRKPGMTRDDLFNINAGIVKSLCTAIANY-CPHALVNMISN 99 (295)
Q Consensus 47 l~daDiVvi~~-g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 99 (295)
-.+||++|+.. ++.. ..--+.+..+ ..+.+. .|+.+|++.+=
T Consensus 34 ~e~AD~iiiNTC~V~~----------~Ae~k~~~~i-~~l~~~~~~~~~ivv~GC 77 (98)
T PF00919_consen 34 PEEADVIIINTCTVRE----------SAEQKSRNRI-RKLKKLKKPGAKIVVTGC 77 (98)
T ss_pred cccCCEEEEEcCCCCc----------HHHHHHHHHH-HHHHHhcCCCCEEEEEeC
Confidence 37999999943 3321 1111223333 333333 38888887653
No 118
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.10 E-value=1.3e+02 Score=24.25 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=33.4
Q ss_pred CCCcEEEEcCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCc
Q 022546 48 EGSDVVIIPAGVPR-KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPV 101 (295)
Q Consensus 48 ~daDiVvi~~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 101 (295)
...|+|++..|..- ..+....+.+ ..-++.+++.+++.+|++.|++++-|-
T Consensus 55 ~~pd~Vii~~G~ND~~~~~~~~~~~---~~~~~~li~~i~~~~~~~~iv~~~~~~ 106 (189)
T cd01825 55 LPPDLVILSYGTNEAFNKQLNASEY---RQQLREFIKRLRQILPNASILLVGPPD 106 (189)
T ss_pred CCCCEEEEECCCcccccCCCCHHHH---HHHHHHHHHHHHHHCCCCeEEEEcCCc
Confidence 46799999877542 1221112233 455677788888888999988888653
No 119
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=35.01 E-value=1.1e+02 Score=25.72 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 022546 49 GSDVVIIPAGVPRK-PGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISN 99 (295)
Q Consensus 49 daDiVvi~~g~~~~-~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 99 (295)
..|+||+..|..-- .+.+ .+ .-..-++++++.+++.+|++.+++++-
T Consensus 89 ~pd~VvI~~G~ND~~~~~~-~~---~~~~~l~~ii~~l~~~~P~~~Iil~~~ 136 (214)
T cd01820 89 NPKVVVLLIGTNNIGHTTT-AE---EIAEGILAIVEEIREKLPNAKILLLGL 136 (214)
T ss_pred CCCEEEEEecccccCCCCC-HH---HHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 57999997775422 1222 22 223456778888888889988777763
No 120
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=34.84 E-value=80 Score=27.58 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=35.8
Q ss_pred hhhcCCCcEEEEcCCCCCCCC-C---CHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022546 44 GKALEGSDVVIIPAGVPRKPG-M---TRDDLFNINAGIVKSLCTAIANYCPH 91 (295)
Q Consensus 44 ~~al~daDiVvi~~g~~~~~g-~---~r~~~~~~n~~i~~~i~~~i~~~~p~ 91 (295)
.++++++|+||-+++.+...+ . ....+...|+...+.+.+.+.+++..
T Consensus 52 ~~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 52 SEALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred hhhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 578899999999888654322 1 23456678999999999999988653
No 121
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=34.51 E-value=34 Score=30.50 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=38.4
Q ss_pred chhhhcCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcc--chHH
Q 022546 42 QLGKALEGS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVN--STVP 106 (295)
Q Consensus 42 d~~~al~da--DiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~ 106 (295)
++.++++++ |++|=+.+.+. -+=+++++.|.+++++.+|+-.|||.. -.++
T Consensus 97 ~L~eav~~~kPtvLIG~S~~~g--------------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p 151 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQGG--------------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP 151 (255)
T ss_dssp SHHHHHHCH--SEEEECSSSTT--------------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred CHHHHHHhcCCCEEEEecCCCC--------------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence 678999999 99888876442 123567888999999999999999987 4443
No 122
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=34.34 E-value=76 Score=29.06 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=28.3
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISN 99 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 99 (295)
++.+.+++||+|+++.-.. . .|..++. .+.+.+..|.+++||++-
T Consensus 183 ~l~e~l~~aDvvv~~lPlt----~-------~T~~li~--~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNT----P-------ETVGIIN--QQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred cHHHHHhcCCEEEECCCCC----H-------HHHHHhH--HHHHhcCCCCcEEEECCC
Confidence 5678899999999964211 1 1222221 344555568899999864
No 123
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=33.95 E-value=1.4e+02 Score=22.55 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=37.0
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCccchHHHHHHHHHHhC
Q 022546 48 EGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISNPVNSTVPIAAEVFKKAG 116 (295)
Q Consensus 48 ~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~k~sg 116 (295)
.++|+|.++... ..+.+.++++++.+++.+| +..+++-++|...... .++..|
T Consensus 49 ~~pdvV~iS~~~------------~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~----~~~~~G 102 (119)
T cd02067 49 EDADAIGLSGLL------------TTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFK----FLKEIG 102 (119)
T ss_pred cCCCEEEEeccc------------cccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHH----HHHHcC
Confidence 467888886532 2345777888888888888 7788888888765432 246666
No 124
>PRK08291 ectoine utilization protein EutC; Validated
Probab=33.74 E-value=68 Score=29.50 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=32.6
Q ss_pred CcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCC
Q 022546 6 LVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58 (295)
Q Consensus 6 ~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g 58 (295)
-+.++.+++.+. ++..+.++++.. ...+... +|+++++.+||+|+.+..
T Consensus 156 ~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~~---~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 156 PIREVRVWARDAAKAEAYAADLRAEL-GIPVTVA---RDVHEAVAGADIIVTTTP 206 (330)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEEe---CCHHHHHccCCEEEEeeC
Confidence 378999999876 455555555321 2233332 467899999999988643
No 125
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=33.33 E-value=62 Score=25.48 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=33.8
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCccch
Q 022546 45 KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISNPVNST 104 (295)
Q Consensus 45 ~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~ 104 (295)
..++++|.+|++-.... .....-++.+.+.+.++.+ +.-+++++|-.|+-
T Consensus 67 ~~~~~~~~~ii~fd~~~----------~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTD----------EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp HHHTTESEEEEEEETTB----------HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred ccccccccccccccccc----------cccccccccccccccccccccccceeeecccccc
Confidence 44778888888754332 2344556677778888877 57788888887755
No 126
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=33.32 E-value=1.6e+02 Score=26.71 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=44.2
Q ss_pred CcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 022546 6 LVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCT 83 (295)
Q Consensus 6 ~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~ 83 (295)
.+.+|+++|.+. +...+..+. ..+... +++.+++.++|+||.+.+.+.. ..++.+..+
T Consensus 201 g~~~V~v~~r~~~ra~~la~~~g-----~~~~~~---~~~~~~l~~aDvVi~at~~~~~------------~~~~~~~~~ 260 (311)
T cd05213 201 GVAEITIANRTYERAEELAKELG-----GNAVPL---DELLELLNEADVVISATGAPHY------------AKIVERAMK 260 (311)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcC-----CeEEeH---HHHHHHHhcCCEEEECCCCCch------------HHHHHHHHh
Confidence 357889999865 233333322 122211 3467889999999998776531 111111111
Q ss_pred HHHhhCCCeEEEEecCCccchH
Q 022546 84 AIANYCPHALVNMISNPVNSTV 105 (295)
Q Consensus 84 ~i~~~~p~a~viv~tNP~d~~t 105 (295)
. ..++..+++-+++|-|+=.
T Consensus 261 ~--~~~~~~~viDlavPrdi~~ 280 (311)
T cd05213 261 K--RSGKPRLIVDLAVPRDIEP 280 (311)
T ss_pred h--CCCCCeEEEEeCCCCCCch
Confidence 1 1124568899999998654
No 127
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=31.90 E-value=2.6e+02 Score=25.07 Aligned_cols=46 Identities=13% Similarity=0.297 Sum_probs=28.9
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCcc
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANY-CPHALVNMISNPVN 102 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~d 102 (295)
.++.+.+++||+||++... ..+.++.+.+..+ .|+.+++..+|-.+
T Consensus 63 ~~~~~~~~~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 63 TDLAEALADADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCHHHHHhCCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 3556678999999997531 1233344445544 46778888887655
No 128
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=31.89 E-value=1.3e+02 Score=30.81 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=40.3
Q ss_pred CCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCC
Q 022546 40 EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTY 118 (295)
Q Consensus 40 t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~ 118 (295)
++|+ ++++|||+||=+. ..+.++=+++-..+.+++ |++ |+.||-..+-..-+ .....
T Consensus 376 ~~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~l---a~~~~-- 433 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQI---AAAAS-- 433 (699)
T ss_pred eCCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHH---HHhcC--
Confidence 3565 7899999988753 233455566677777887 454 44788877443222 23332
Q ss_pred CCCCeeec
Q 022546 119 DEKKLFGV 126 (295)
Q Consensus 119 ~~~kviG~ 126 (295)
.|+|++|+
T Consensus 434 ~p~r~~g~ 441 (699)
T TIGR02440 434 RPENVIGL 441 (699)
T ss_pred CcccEEEE
Confidence 35688886
No 129
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.45 E-value=1.5e+02 Score=26.57 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=36.2
Q ss_pred CCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCCccchHHHHHHHHHHhCC
Q 022546 40 EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC--PHALVNMISNPVNSTVPIAAEVFKKAGT 117 (295)
Q Consensus 40 t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~--p~a~viv~tNP~d~~t~~~~~~~k~sg~ 117 (295)
++|+ +++++||+|+-+.- .+.++=+++-..+.+++ |++ |++||-..+-.... .....
T Consensus 76 ~~~~-~~~~~~d~ViEav~--------------E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~l---a~~~~- 134 (286)
T PRK07819 76 TTDL-GDFADRQLVIEAVV--------------EDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKL---AAATK- 134 (286)
T ss_pred eCCH-HHhCCCCEEEEecc--------------cCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHH---HhhcC-
Confidence 3566 77999999988741 12222233334777775 454 33666655443322 23332
Q ss_pred CCCCCeeecc
Q 022546 118 YDEKKLFGVT 127 (295)
Q Consensus 118 ~~~~kviG~t 127 (295)
.++|++|+-
T Consensus 135 -~~~r~~g~h 143 (286)
T PRK07819 135 -RPGRVLGLH 143 (286)
T ss_pred -CCccEEEEe
Confidence 356777763
No 130
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=31.42 E-value=98 Score=30.85 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=50.0
Q ss_pred CchhhhcCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCc---cchHHHHHHHHHHh
Q 022546 41 EQLGKALEGS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPV---NSTVPIAAEVFKKA 115 (295)
Q Consensus 41 ~d~~~al~da--DiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~---d~~t~~~~~~~k~s 115 (295)
.++.++++++ |++|=+.+.+.. +=+++++.|.+++++.+|+-.|||. ++..+-+ ++.+
T Consensus 371 ~~L~e~v~~~KPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda---~~~T 433 (559)
T PTZ00317 371 KTLEDVVRFVKPTALLGLSGVGGV--------------FTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDA---YKWT 433 (559)
T ss_pred CCHHHHHhccCCCEEEEecCCCCC--------------CCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHH---Hhhc
Confidence 4688999999 998877664421 2246778889999999999999997 5665543 5543
Q ss_pred CCCCCCCeeec-chhhH
Q 022546 116 GTYDEKKLFGV-TTLDV 131 (295)
Q Consensus 116 g~~~~~kviG~-t~ld~ 131 (295)
. .+-+|++ .-.+.
T Consensus 434 ~---Grai~AtGspf~p 447 (559)
T PTZ00317 434 N---GRAIVASGSPFPP 447 (559)
T ss_pred c---CCEEEEECCCCCC
Confidence 2 3568887 44444
No 131
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.13 E-value=1.5e+02 Score=26.50 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=12.7
Q ss_pred CchhhhcCCCcEEEEcC
Q 022546 41 EQLGKALEGSDVVIIPA 57 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~ 57 (295)
+++ +++++||+||.+.
T Consensus 76 ~~~-~~~~~aD~Vieav 91 (292)
T PRK07530 76 TDL-EDLADCDLVIEAA 91 (292)
T ss_pred CCH-HHhcCCCEEEEcC
Confidence 454 6799999999974
No 132
>PRK10433 putative RNA methyltransferase; Provisional
Probab=30.97 E-value=1.6e+02 Score=25.67 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=29.2
Q ss_pred cCeEEEEeCCC-chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCC
Q 022546 7 VSSLSLYDIAN-TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPR 61 (295)
Q Consensus 7 ~~ei~L~D~~~-~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~ 61 (295)
+++|+|++... ....+.-....+.+ ...+.+ +++.+|++|++++|-+.+..+
T Consensus 28 ~~~L~lV~p~~~~~~~a~~~A~gA~d~L~~a~v~---~tL~eAl~d~~~vigttar~~ 82 (228)
T PRK10433 28 FSELRIVDSQAHLEPAARWVAHGSGDILDNAKVF---DTLAEALHDVDFTVATTARSR 82 (228)
T ss_pred CCEEEEeCCCCCCcHHHHHHhccHHHHhcCceEE---CCHHHHHHhCCeEEEEccCCC
Confidence 57889997643 11222222222111 133333 357899999999988766443
No 133
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=30.63 E-value=1.5e+02 Score=23.95 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCc
Q 022546 48 EGSDVVIIPAGVPRK-PGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPV 101 (295)
Q Consensus 48 ~daDiVvi~~g~~~~-~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 101 (295)
.+.|+||+..|.... .+....+.+..+ ++.+.+.++ .|++.++++|.|.
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~---~~~~i~~i~--~~~~~vil~~~~~ 115 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRAD---LEEAVRRLR--AAGARVVVFTIPD 115 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHH---HHHHHHHHH--hCCCEEEEecCCC
Confidence 588999997665422 113333334443 455666665 4677777777653
No 134
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=30.57 E-value=1e+02 Score=25.39 Aligned_cols=50 Identities=14% Similarity=0.424 Sum_probs=31.0
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccch
Q 022546 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNST 104 (295)
Q Consensus 46 al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~ 104 (295)
-+++||.+|++-.... +.. +.. +.+...+.+++++++..+++++|=+|+.
T Consensus 69 ~~~~a~~~ilvyd~~~-----~~S-f~~---~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 69 SYRGADVFVLAFSLIS-----RAS-YEN---VLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred hcCCCcEEEEEEEcCC-----HHH-HHH---HHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 4678888888643321 221 111 1134455666677888889999999874
No 135
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=30.48 E-value=42 Score=27.09 Aligned_cols=76 Identities=20% Similarity=0.142 Sum_probs=39.8
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCC
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEK 121 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~ 121 (295)
+-++.+..||+|++|+..-- ..+ .+.+-++++++..+++.-|.-.+.+-+ +...| -.
T Consensus 55 ~~~~~l~~aD~viiTGsTlv----------N~T-------i~~iL~~~~~~~~vil~GpS~~~~P~~---l~~~G---v~ 111 (147)
T PF04016_consen 55 DAEEILPWADVVIITGSTLV----------NGT-------IDDILELARNAREVILYGPSAPLHPEA---LFDYG---VT 111 (147)
T ss_dssp GHHHHGGG-SEEEEECHHCC----------TTT-------HHHHHHHTTTSSEEEEESCCGGS-GGG---GCCTT----S
T ss_pred HHHHHHccCCEEEEEeeeee----------cCC-------HHHHHHhCccCCeEEEEecCchhhHHH---HHhCC---CC
Confidence 44788999999999974221 122 233344555444444555555555421 23333 34
Q ss_pred CeeecchhhHHHHHHHHHh
Q 022546 122 KLFGVTTLDVVRAKTFYAG 140 (295)
Q Consensus 122 kviG~t~ld~~R~~~~la~ 140 (295)
-+-|+-..|..++.+.+++
T Consensus 112 ~v~g~~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 112 YVGGSRVVDPEKVLRAISE 130 (147)
T ss_dssp EEEEEEES-HHHHHHHHCT
T ss_pred EEEEEEEeCHHHHHHHHHc
Confidence 4555556677777777654
No 136
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=30.43 E-value=1.7e+02 Score=27.09 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCC-----CCeeec-c--hhhHHHHHHHHHhhcCCCCc
Q 022546 76 GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE-----KKLFGV-T--TLDVVRAKTFYAGKVNVPVA 147 (295)
Q Consensus 76 ~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~-----~kviG~-t--~ld~~R~~~~la~~l~v~~~ 147 (295)
+.+..+.++..++.++ .+.+++-||.+.+- ..++++...+.+ .-+||+ | +.+..-++.+|-+.+|+++.
T Consensus 128 ~~l~~L~ea~~~~g~~-rvavvG~PC~i~av--rk~~~~~~~~~~~~~~i~~~iGlfC~e~f~y~~l~~~l~e~~gvd~~ 204 (332)
T COG1035 128 PNLSALKEAVRKYGLE-RVAVVGTPCQIQAV--RKLQKFDLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLGVDPE 204 (332)
T ss_pred hhHHHHHHHHhhcCCc-eEEEeecchHHHHH--HHHhhccccccccccceEEEEeeecCCCcCHHHHHHHHHHHhCCCHH
Confidence 3455555556566553 68889999998873 333443331211 224898 7 35554578999999999999
Q ss_pred cceEEEee
Q 022546 148 EVNVPVIG 155 (295)
Q Consensus 148 ~v~~~viG 155 (295)
+|...-++
T Consensus 205 dV~k~di~ 212 (332)
T COG1035 205 DVEKMDIR 212 (332)
T ss_pred HeEEEEee
Confidence 99877776
No 137
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=30.39 E-value=1.4e+02 Score=25.84 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 74 NAGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 74 n~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
-..-++++.+.|++.+|++.|++++-|
T Consensus 129 ~~~~l~~~l~~i~~~~p~a~I~~~gyp 155 (259)
T cd01823 129 VGARLKAVLDRIRERAPNARVVVVGYP 155 (259)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeccc
Confidence 345678888888888999988877743
No 138
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=30.26 E-value=99 Score=28.53 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=32.5
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCccc
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANY-CPHALVNMISNPVNS 103 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~d~ 103 (295)
+|+.++++++|+||++.- ...++++++.+..+ .++..++.++|-.+.
T Consensus 69 ~d~~~a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 69 TDFAEAANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred CCHHHHHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 466788999999999742 12445555555554 467788999998764
No 139
>PLN03080 Probable beta-xylosidase; Provisional
Probab=30.25 E-value=55 Score=34.06 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=33.4
Q ss_pred hhcCCCcEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEe-cCCccc
Q 022546 45 KALEGSDVVIIPAGVPR---KPGMTRDDLFNINAGIVKSLCTAIANYCPH-ALVNMI-SNPVNS 103 (295)
Q Consensus 45 ~al~daDiVvi~~g~~~---~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~-a~viv~-tNP~d~ 103 (295)
++.++||+||++.|... .+|.+|.++..-. --.++++.+.+.+++ .++++. ++|.++
T Consensus 483 ~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~--~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l 544 (779)
T PLN03080 483 AIAKRADFVVVVAGLDLSQETEDHDRVSLLLPG--KQMDLISSVASVSKKPVVLVLTGGGPVDV 544 (779)
T ss_pred HHhccCCEEEEEeCCCccccccCCCcccccCCc--cHHHHHHHHHhhcCCCEEEEEeCCceeec
Confidence 56689999988877543 2344665443211 123555566665554 555555 479887
No 140
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=30.00 E-value=56 Score=26.88 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=29.3
Q ss_pred CeEEEEeCCCchh--HHHhhhCCCCCCeEEEe-eCCCchhhhcCCCcEEEEcCCCCC
Q 022546 8 SSLSLYDIANTPG--VAADVSHINSPAQVEGY-AGEEQLGKALEGSDVVIIPAGVPR 61 (295)
Q Consensus 8 ~ei~L~D~~~~~~--~~~Dl~~~~~~~~v~~~-~~t~d~~~al~daDiVvi~~g~~~ 61 (295)
+.++++......| .++=|.+. +..++.. +.|.++++-++.|||||.+.|.|.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~--~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~ 91 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK--GATVTICHSKTKNLQEITRRADIVVSAVGKPN 91 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT--T-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT
T ss_pred CEEEEECCcCCCChHHHHHHHhC--CCeEEeccCCCCcccceeeeccEEeeeecccc
Confidence 4566666544222 23333332 2344443 455688899999999999988663
No 141
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=29.28 E-value=1.2e+02 Score=31.53 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=40.2
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCC
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYD 119 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~ 119 (295)
+|+ +++++||+||=+. ..|.++=+++-..+.+++ |++ |+.||-..+-..-+ ....+ .
T Consensus 407 ~~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~l---a~~~~--~ 464 (737)
T TIGR02441 407 LDY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHC--IIASNTSALPIKDI---AAVSS--R 464 (737)
T ss_pred CCH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHH---HhhcC--C
Confidence 465 7899999987543 334455566777777887 565 44788777444222 23333 3
Q ss_pred CCCeeec
Q 022546 120 EKKLFGV 126 (295)
Q Consensus 120 ~~kviG~ 126 (295)
|+|++|+
T Consensus 465 p~r~ig~ 471 (737)
T TIGR02441 465 PEKVIGM 471 (737)
T ss_pred ccceEEE
Confidence 5688886
No 142
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=29.22 E-value=1.4e+02 Score=29.11 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=13.9
Q ss_pred CchhhhcCCCcEEEEcC
Q 022546 41 EQLGKALEGSDVVIIPA 57 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~ 57 (295)
+++.+++++||+|+.+.
T Consensus 72 ~~~~ea~~~aD~Vieav 88 (495)
T PRK07531 72 ASLAEAVAGADWIQESV 88 (495)
T ss_pred CCHHHHhcCCCEEEEcC
Confidence 46678899999999864
No 143
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=29.09 E-value=1.1e+02 Score=24.45 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=16.3
Q ss_pred HHHHHHHHhhCCCeEEEEecCCccch
Q 022546 79 KSLCTAIANYCPHALVNMISNPVNST 104 (295)
Q Consensus 79 ~~i~~~i~~~~p~a~viv~tNP~d~~ 104 (295)
+...+.+.+++++.-+++++|.+|..
T Consensus 92 ~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 92 PNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred HHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 34455555555566677788887753
No 144
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=29.08 E-value=1.6e+02 Score=26.58 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.0
Q ss_pred CchhhhcCCCcEEEEcC
Q 022546 41 EQLGKALEGSDVVIIPA 57 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~ 57 (295)
.|+.+++++||+|+.+.
T Consensus 74 ~~~~~a~~~ad~Vi~av 90 (308)
T PRK06129 74 DSLADAVADADYVQESA 90 (308)
T ss_pred CcHHHhhCCCCEEEECC
Confidence 46777899999999875
No 145
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=28.85 E-value=86 Score=25.81 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=23.2
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 022546 45 KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVN 95 (295)
Q Consensus 45 ~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~vi 95 (295)
+-++.||+||+. +-|++... ..+..+.+.+++.+|++.++
T Consensus 138 ~Qi~~ADvIvln----------K~D~~~~~-~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 138 EQIAFADVIVLN----------KIDLVSDE-QKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp HHHCT-SEEEEE-----------GGGHHHH---HHHHHHHHHHH-TTSEEE
T ss_pred hcchhcCEEEEe----------ccccCChh-hHHHHHHHHHHHHCCCCEEe
Confidence 446667777764 33444433 34577778888888988765
No 146
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated
Probab=28.78 E-value=1.6e+02 Score=26.43 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=42.1
Q ss_pred hCCCeEEEEecCCccchHHHHHHHHHHhC---CCCCC--Ceeec-c--hhhHHHHHHHHHhhcCCCCccceEEEe
Q 022546 88 YCPHALVNMISNPVNSTVPIAAEVFKKAG---TYDEK--KLFGV-T--TLDVVRAKTFYAGKVNVPVAEVNVPVI 154 (295)
Q Consensus 88 ~~p~a~viv~tNP~d~~t~~~~~~~k~sg---~~~~~--kviG~-t--~ld~~R~~~~la~~l~v~~~~v~~~vi 154 (295)
..+...|.+++.||++-+.-- +.++.. .+..+ =+||+ | ..+...++.++.+++++++.+|..+-+
T Consensus 91 ~~~~~kva~VGtPCqI~alr~--l~~~~~~~~~~~d~l~~~Igl~C~g~~~~~~~~~~l~~~~g~~~~~v~~~~~ 163 (282)
T PRK09325 91 EYGLDKVGIVGTPCQIQAVRK--AQLYPVGMRHVPDKIALIVGIFCMENFPYEGLKTIVEDHCGVKMEDVKKMDI 163 (282)
T ss_pred hcCCCeEEEEccChHHHHHHH--HHhccccccccccceeEEEcccCCCCCCHHHHHHHHHHHhCCCHHHeeEEEE
Confidence 346688999999999887422 222101 01122 26788 7 456677788998888999988854433
No 147
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=28.78 E-value=86 Score=28.77 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=32.6
Q ss_pred CcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCC
Q 022546 6 LVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58 (295)
Q Consensus 6 ~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g 58 (295)
-+++|.+++.+. ++..+.++.+.. ...+... +++++++.+||+|+.+-.
T Consensus 153 ~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~~---~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 153 DIRSARIWARDSAKAEALALQLSSLL-GIDVTAA---TDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CccEEEEECCCHHHHHHHHHHHHhhc-CceEEEe---CCHHHHhccCCEEEEecC
Confidence 468999999876 555566664321 2233332 457789999999998643
No 148
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=28.73 E-value=1.3e+02 Score=27.25 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhCCC--eEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCC
Q 022546 77 IVKSLCTAIANYCPH--ALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPV 146 (295)
Q Consensus 77 i~~~i~~~i~~~~p~--a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~ 146 (295)
-+.++..++.-+.++ .+||-+||-+|++-+++ + .||-++++==|-. ....-+|....=+++.+|++
T Consensus 294 TMLELLNQLDGFss~~~vKviAATNRvDiLDPAL---l-RSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~ 362 (424)
T KOG0652|consen 294 TMLELLNQLDGFSSDDRVKVIAATNRVDILDPAL---L-RSGRLDRKIEFPHPNEEARARILQIHSRKMNVSD 362 (424)
T ss_pred HHHHHHHhhcCCCCccceEEEeecccccccCHHH---h-hcccccccccCCCCChHHHHHHHHHhhhhcCCCC
Confidence 366777777777765 47888899999999975 3 5665765433444 34444555566677777665
No 149
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=28.57 E-value=2.2e+02 Score=25.66 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=26.3
Q ss_pred CCCCcCeEEEEeCCC-chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCC
Q 022546 3 LDPLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58 (295)
Q Consensus 3 ~~~~~~ei~L~D~~~-~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g 58 (295)
..+...++.++|.++ ....+.+. .. .... ..++.+++++||+||++..
T Consensus 27 ~~g~~~~V~~~dr~~~~~~~a~~~---g~--~~~~---~~~~~~~~~~aDvViiavp 75 (307)
T PRK07502 27 RLGLAGEIVGADRSAETRARAREL---GL--GDRV---TTSAAEAVKGADLVILCVP 75 (307)
T ss_pred hcCCCcEEEEEECCHHHHHHHHhC---CC--Ccee---cCCHHHHhcCCCEEEECCC
Confidence 344445888999865 22222211 11 1111 1234577899999999753
No 150
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=28.50 E-value=1.3e+02 Score=30.24 Aligned_cols=71 Identities=24% Similarity=0.364 Sum_probs=49.4
Q ss_pred CchhhhcCC--CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCc---cchHHHHHHHHHHh
Q 022546 41 EQLGKALEG--SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPV---NSTVPIAAEVFKKA 115 (295)
Q Consensus 41 ~d~~~al~d--aDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~---d~~t~~~~~~~k~s 115 (295)
.++.+++++ +|++|=+.+.+.. +=+++++.|.+++++.+|+-.|||. ++..+-+ ++.+
T Consensus 391 ~~L~e~v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a---~~~T 453 (581)
T PLN03129 391 ASLLEAVKAIKPTVLIGLSGVGGT--------------FTKEVLEAMASLNERPIIFALSNPTSKAECTAEEA---YTWT 453 (581)
T ss_pred CCHHHHHhccCCCEEEEecCCCCC--------------CCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHH---HHhh
Confidence 468899999 8998887654421 2246778888899999999999997 5665443 5654
Q ss_pred CCCCCCCeeec-chhhH
Q 022546 116 GTYDEKKLFGV-TTLDV 131 (295)
Q Consensus 116 g~~~~~kviG~-t~ld~ 131 (295)
. .+-+|++ +-.+.
T Consensus 454 ~---G~ai~AtGSPf~p 467 (581)
T PLN03129 454 G---GRAIFASGSPFDP 467 (581)
T ss_pred c---CCEEEEeCCCCCC
Confidence 2 2458887 43443
No 151
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=28.47 E-value=54 Score=29.99 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.1
Q ss_pred eEEEeeCCCchhhhcCCCcEEEE
Q 022546 33 QVEGYAGEEQLGKALEGSDVVII 55 (295)
Q Consensus 33 ~v~~~~~t~d~~~al~daDiVvi 55 (295)
++.. |+|+++|++|||+|..
T Consensus 208 ~i~~---t~d~~eAv~gADvvyT 227 (310)
T COG0078 208 KITL---TEDPEEAVKGADVVYT 227 (310)
T ss_pred eEEE---ecCHHHHhCCCCEEEe
Confidence 5554 3688999999999887
No 152
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.14 E-value=92 Score=28.14 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=31.4
Q ss_pred CeEEEEeCCCchhH--HHhhhCCCCCCeEEEe-eCCCchhhhcCCCcEEEEcCCCC
Q 022546 8 SSLSLYDIANTPGV--AADVSHINSPAQVEGY-AGEEQLGKALEGSDVVIIPAGVP 60 (295)
Q Consensus 8 ~ei~L~D~~~~~~~--~~Dl~~~~~~~~v~~~-~~t~d~~~al~daDiVvi~~g~~ 60 (295)
.++++++.....|. ++=|... +..++.. +.|.++.+.+++||+||.+.|.+
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~--~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~ 206 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNA--DATVTICHSKTENLKAELRQADILVSAAGKA 206 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhC--CCeeEEEecChhHHHHHHhhCCEEEECCCcc
Confidence 57788887653222 2222222 2333332 44567888999999999988755
No 153
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=28.09 E-value=1.7e+02 Score=30.18 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=40.2
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCC
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYD 119 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~ 119 (295)
+|+ ++++|||+||=+. ..+.++=+++-..+.+.+ |++ |+.||-..+-..-+ ..... .
T Consensus 385 ~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~i---a~~~~--~ 442 (714)
T TIGR02437 385 LSY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLL---AKALK--R 442 (714)
T ss_pred CCH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHH---HhhcC--C
Confidence 465 7899999988764 233445556667777777 565 45788777444222 23332 3
Q ss_pred CCCeeec
Q 022546 120 EKKLFGV 126 (295)
Q Consensus 120 ~~kviG~ 126 (295)
|.|++|+
T Consensus 443 p~r~ig~ 449 (714)
T TIGR02437 443 PENFCGM 449 (714)
T ss_pred cccEEEE
Confidence 5688887
No 154
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=28.03 E-value=2.3e+02 Score=26.79 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=34.5
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCccchHHHH
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMI-SNPVNSTVPIA 108 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~~ 108 (295)
+++.+++++||+||++...+.....+ -+...+.+.++.+.++- ++.+++.- |-|.+....+.
T Consensus 68 ~~~~~~~~~advvii~vpt~~~~~~~------~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 68 TDYEDAIRDADVIIICVPTPLKEDGS------PDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred CCHHHHHhhCCEEEEEeCCCCCCCCC------cChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 45667899999999987766433211 12333444444554443 44555444 44555555554
No 155
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=27.84 E-value=98 Score=27.30 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=38.6
Q ss_pred CCCCCCcCeEEEEeCCC-chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 022546 1 MKLDPLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVK 79 (295)
Q Consensus 1 l~~~~~~~ei~L~D~~~-~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~ 79 (295)
|+..+..-+|.-+|.++ ....+..+ .... . .. .+ .++++++|+||++. | +..+.
T Consensus 5 L~~~g~~~~v~g~d~~~~~~~~a~~~--g~~~-~--~~---~~-~~~~~~~Dlvvlav--P--------------~~~~~ 59 (258)
T PF02153_consen 5 LRKAGPDVEVYGYDRDPETLEAALEL--GIID-E--AS---TD-IEAVEDADLVVLAV--P--------------VSAIE 59 (258)
T ss_dssp HHHTTTTSEEEEE-SSHHHHHHHHHT--TSSS-E--EE---SH-HHHGGCCSEEEE-S-----------------HHHHH
T ss_pred HHhCCCCeEEEEEeCCHHHHHHHHHC--CCee-e--cc---CC-HhHhcCCCEEEEcC--C--------------HHHHH
Confidence 34566778999999876 32233222 1111 1 11 23 47899999999974 2 23344
Q ss_pred HHHHHHHhh-CCCeEEEEecC
Q 022546 80 SLCTAIANY-CPHALVNMISN 99 (295)
Q Consensus 80 ~i~~~i~~~-~p~a~viv~tN 99 (295)
++.+.+..+ .++++|.=++.
T Consensus 60 ~~l~~~~~~~~~~~iv~Dv~S 80 (258)
T PF02153_consen 60 DVLEEIAPYLKPGAIVTDVGS 80 (258)
T ss_dssp HHHHHHHCGS-TTSEEEE--S
T ss_pred HHHHHhhhhcCCCcEEEEeCC
Confidence 444444443 46777666543
No 156
>PRK06141 ornithine cyclodeaminase; Validated
Probab=27.79 E-value=1.1e+02 Score=27.84 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=31.1
Q ss_pred cCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCC
Q 022546 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58 (295)
Q Consensus 7 ~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g 58 (295)
+.+|.++|.+. ++..+.++.+. ...+... .++++++++||+|+.+..
T Consensus 150 ~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~aT~ 198 (314)
T PRK06141 150 IKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCATL 198 (314)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEeeC
Confidence 78999999876 55666666542 1233432 356788999999966543
No 157
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=27.61 E-value=2.1e+02 Score=25.60 Aligned_cols=36 Identities=11% Similarity=-0.050 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccc
Q 022546 67 RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNS 103 (295)
Q Consensus 67 r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~ 103 (295)
+.+...+...-++++++.+++..||. +|++|||--.
T Consensus 24 ~~~~~~~~~~a~~~~~~~v~~~~pD~-ivvi~~dH~~ 59 (277)
T cd07368 24 PAAQREICWHAYAICAERLAALQVTS-VVVIGDDHYT 59 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEcCchHh
Confidence 35677888899999999999999997 5568887543
No 158
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=27.53 E-value=1.1e+02 Score=22.50 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=34.4
Q ss_pred EeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHH
Q 022546 235 FVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPE 280 (295)
Q Consensus 235 ~~~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~ 280 (295)
+++|+ .+.|+++|.+=.++|--+=+-- |++.+-+++++.++..
T Consensus 36 Vi~G~--~GlfVAMPSrrt~dgEFrDI~H-PI~~~~R~kIq~aVl~ 78 (95)
T COG2088 36 VIEGN--NGLFVAMPSRRTPDGEFRDIAH-PINSDTREKIQDAVLK 78 (95)
T ss_pred EEeCC--cceEEEccCccCCCcchhhccC-cCCHHHHHHHHHHHHH
Confidence 34554 6999999999999998665555 8999999999988644
No 159
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=26.74 E-value=79 Score=22.49 Aligned_cols=20 Identities=40% Similarity=0.419 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 022546 264 GPLSDYEKQGLESLKPELKA 283 (295)
Q Consensus 264 ~~L~~~E~~~l~~s~~~l~~ 283 (295)
++|+++|++.|+.+.-.||-
T Consensus 53 GNL~~~E~~lL~~~L~eLRm 72 (74)
T PF08899_consen 53 GNLDEEEERLLESALYELRM 72 (74)
T ss_pred cCCCHHHHHHHHHHHHHHhh
Confidence 58999999999999888873
No 160
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=26.73 E-value=1.2e+02 Score=25.34 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=28.0
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccch
Q 022546 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNST 104 (295)
Q Consensus 46 al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~ 104 (295)
.+++||.++++-.... +..+ .++. ..+.+.+++++++.-+++++|=+|+-
T Consensus 84 ~~~~ad~iilv~d~t~-----~~Sf--~~~~--~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 84 AYGRSDVVLLCFSIAS-----PNSL--RNVK--TMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred cCCCCCEEEEEEECCC-----hhHH--HHHH--HHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 4678888888654332 1111 1111 11233445556777778889988864
No 161
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=26.64 E-value=1.4e+02 Score=26.39 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=46.5
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccch-HHHHHHHHHHhCCCC
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNST-VPIAAEVFKKAGTYD 119 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~-t~~~~~~~k~sg~~~ 119 (295)
+|...+++|||+|| +..-.|+.+=+++=+.+.+.|+.. -|..||-..+. +.++ ... -.
T Consensus 88 tnv~~~v~dadlii--------------EAivEn~diK~~lF~~l~~~ak~~-~il~tNTSSl~lt~ia----~~~--~~ 146 (298)
T KOG2304|consen 88 TNVSDAVSDADLII--------------EAIVENLDIKRKLFKDLDKIAKSS-TILATNTSSLSLTDIA----SAT--QR 146 (298)
T ss_pred CCHHHhhhhhHHHH--------------HHHHHhHHHHHHHHHHHHhhcccc-eEEeecccceeHHHHH----hhc--cC
Confidence 45677888888754 456889999999999999999654 34578887754 3332 222 35
Q ss_pred CCCeeec
Q 022546 120 EKKLFGV 126 (295)
Q Consensus 120 ~~kviG~ 126 (295)
+.||.|+
T Consensus 147 ~srf~Gl 153 (298)
T KOG2304|consen 147 PSRFAGL 153 (298)
T ss_pred hhhhcee
Confidence 6789998
No 162
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=26.21 E-value=1.2e+02 Score=24.58 Aligned_cols=40 Identities=13% Similarity=0.284 Sum_probs=27.1
Q ss_pred HHHHHHHhhCC---CeEEEEecC-CccchHHHHHHHHHHhCCCCCCCeeec
Q 022546 80 SLCTAIANYCP---HALVNMISN-PVNSTVPIAAEVFKKAGTYDEKKLFGV 126 (295)
Q Consensus 80 ~i~~~i~~~~p---~a~viv~tN-P~d~~t~~~~~~~k~sg~~~~~kviG~ 126 (295)
+....|.+..| ..++..+.| +.|+.+ |+..| +|++|++-+
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~------y~~~g-i~~~~i~~i 148 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVIS------YSAVG-IPPSRIFTI 148 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHH------HHHcC-CChhhEEEE
Confidence 44555666555 245566766 888876 56778 999998865
No 163
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=26.06 E-value=1.3e+02 Score=25.32 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=30.3
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccc
Q 022546 45 KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNS 103 (295)
Q Consensus 45 ~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~ 103 (295)
..+++||.+|++-.... +..+ .-++...+.|.+++++.-+++++|=+|+
T Consensus 63 ~~~~~ad~~ilV~D~t~-----~~S~-----~~i~~w~~~i~~~~~~~piilvgNK~Dl 111 (200)
T smart00176 63 GYYIQGQCAIIMFDVTA-----RVTY-----KNVPNWHRDLVRVCENIPIVLCGNKVDV 111 (200)
T ss_pred HHhcCCCEEEEEEECCC-----hHHH-----HHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 34678888888643221 2211 2234455556666777778889999885
No 164
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.05 E-value=1.8e+02 Score=24.21 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHhhC-----CCeEEEEecCC
Q 022546 48 EGSDVVIIPAGVPRKP-G-MTRDDLFNINAGIVKSLCTAIANYC-----PHALVNMISNP 100 (295)
Q Consensus 48 ~daDiVvi~~g~~~~~-g-~~r~~~~~~n~~i~~~i~~~i~~~~-----p~a~viv~tNP 100 (295)
...|+|++..|..-.. + ....+.+..| +++++..+++.+ |++.+++++.|
T Consensus 78 ~~pd~vii~lGtND~~~~~~~~~~~~~~~---l~~lv~~i~~~~~~~~~~~~~iil~~pp 134 (208)
T cd01839 78 SPLDLVIIMLGTNDLKSYFNLSAAEIAQG---LGALVDIIRTAPIEPGMPAPKILIVAPP 134 (208)
T ss_pred CCCCEEEEeccccccccccCCCHHHHHHH---HHHHHHHHHhccccccCCCCCEEEEeCC
Confidence 4789999987754211 1 1123444544 456666666665 78877777765
No 165
>PRK07340 ornithine cyclodeaminase; Validated
Probab=25.77 E-value=1.2e+02 Score=27.64 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=31.5
Q ss_pred cCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCC
Q 022546 7 VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59 (295)
Q Consensus 7 ~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~ 59 (295)
+.+|.++|.+. ++..+..+.+. ...+. . .+.++++.+||+|+.+-..
T Consensus 150 ~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~-~---~~~~~av~~aDiVitaT~s 198 (304)
T PRK07340 150 VRRVWVRGRTAASAAAFCAHARAL--GPTAE-P---LDGEAIPEAVDLVVTATTS 198 (304)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhc--CCeeE-E---CCHHHHhhcCCEEEEccCC
Confidence 47899999976 55566666542 12333 1 3457899999999986543
No 166
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=25.32 E-value=2e+02 Score=27.96 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=60.5
Q ss_pred CeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 022546 8 SSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAN 87 (295)
Q Consensus 8 ~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~ 87 (295)
-++..+|.++......+... ....+....+..+. +.+.++|+||...|.|...-+ -.......++++-++=-..+.
T Consensus 31 ~~v~v~D~~~~~~~~~~~~~--~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi~~~~p~-v~~A~~~gi~i~~dieL~~r~ 106 (448)
T COG0771 31 AEVTVSDDRPAPEGLAAQPL--LLEGIEVELGSHDD-EDLAEFDLVVKSPGIPPTHPL-VEAAKAAGIEIIGDIELFYRL 106 (448)
T ss_pred CeEEEEcCCCCccchhhhhh--hccCceeecCccch-hccccCCEEEECCCCCCCCHH-HHHHHHcCCcEEeHHHHHHHh
Confidence 56788887662211111110 01233333344343 779999999999887743221 222335566777666666654
Q ss_pred h--CCCeEEEEecCCccchHHHHHHHHHHhC
Q 022546 88 Y--CPHALVNMISNPVNSTVPIAAEVFKKAG 116 (295)
Q Consensus 88 ~--~p~a~viv~tNP~d~~t~~~~~~~k~sg 116 (295)
. +| -+-|.-||==.+.|.+++++.+.+|
T Consensus 107 ~~~~p-~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 107 SGEAP-IVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred cCCCC-EEEEECCCchHHHHHHHHHHHHhcC
Confidence 3 34 3344447777788888888888888
No 167
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=25.29 E-value=2.3e+02 Score=28.46 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=36.0
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISN 99 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 99 (295)
+..+++.++|+||.++|........-...+..|..-...+++.+.+.+- +.||++|-
T Consensus 152 sI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV-gRIV~VSS 208 (576)
T PLN03209 152 QIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV-NHFILVTS 208 (576)
T ss_pred HHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC-CEEEEEcc
Confidence 4556789999999988765322112223345677777888888877653 35565554
No 168
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=25.13 E-value=1.4e+02 Score=24.66 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=25.3
Q ss_pred EEeEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 022546 247 ASKVRLGKNGADEVLGLGPLSDYEKQGLESL 277 (295)
Q Consensus 247 s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s 277 (295)
|.=++++|+|...-+..+.|+++|.+++-.-
T Consensus 126 SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 126 SAIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred ceEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 4456899999999888889999998866543
No 169
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.83 E-value=2.3e+02 Score=25.87 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=42.5
Q ss_pred CeEEEEeCCCc--hhHHHhhhCCCCCCeEEEe-eCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022546 8 SSLSLYDIANT--PGVAADVSHINSPAQVEGY-AGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTA 84 (295)
Q Consensus 8 ~ei~L~D~~~~--~~~~~Dl~~~~~~~~v~~~-~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~ 84 (295)
.+++++..... ..++.-|.... ..++.. ..|.++.+..+.||+||.+.|.+. .-+.++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~g--atVtv~~~~t~~l~e~~~~ADIVIsavg~~~---~v~~~~-------------- 220 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAH--CSVTVVHSRSTDAKALCRQADIVVAAVGRPR---LIDADW-------------- 220 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC--CEEEEECCCCCCHHHHHhcCCEEEEecCChh---cccHhh--------------
Confidence 45666665332 33344444432 355554 345678888999999999887653 111111
Q ss_pred HHhhCCCeEEEEec-CC
Q 022546 85 IANYCPHALVNMIS-NP 100 (295)
Q Consensus 85 i~~~~p~a~viv~t-NP 100 (295)
..|.+++|-++ |+
T Consensus 221 ---ik~GaiVIDvgin~ 234 (301)
T PRK14194 221 ---LKPGAVVIDVGINR 234 (301)
T ss_pred ---ccCCcEEEEecccc
Confidence 45888888886 54
No 170
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=24.82 E-value=2.4e+02 Score=25.12 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=11.8
Q ss_pred hhhcCCCcEEEEcC
Q 022546 44 GKALEGSDVVIIPA 57 (295)
Q Consensus 44 ~~al~daDiVvi~~ 57 (295)
.+++++||+||.+.
T Consensus 78 ~~~~~~aD~Vieav 91 (295)
T PLN02545 78 LEELRDADFIIEAI 91 (295)
T ss_pred HHHhCCCCEEEEcC
Confidence 36799999999974
No 171
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=24.79 E-value=1.3e+02 Score=26.99 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccch
Q 022546 68 DDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNST 104 (295)
Q Consensus 68 ~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~ 104 (295)
.+...+...-++++++.+++..||. +|+++||--.+
T Consensus 27 ~~~~~~~~~a~~~~~~~i~~~~PD~-iVvi~~dH~~~ 62 (277)
T cd07950 27 DPAWAPIFDGYEPVKQWLAEQKPDV-LFMVYNDHVTS 62 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCE-EEEEcCcHHHH
Confidence 3344688899999999999999996 56688886443
No 172
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=24.70 E-value=2.2e+02 Score=21.79 Aligned_cols=56 Identities=23% Similarity=0.218 Sum_probs=32.9
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCc
Q 022546 45 KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPV 101 (295)
Q Consensus 45 ~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 101 (295)
.+..+.|+|++..|........ ..-...-..-++++++.+.+..|++.+++++-|-
T Consensus 61 ~~~~~~d~vil~~G~ND~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~ 116 (187)
T cd00229 61 LLKDKPDLVIIELGTNDLGRGG-DTSIDEFKANLEELLDALRERAPGAKVILITPPP 116 (187)
T ss_pred hccCCCCEEEEEeccccccccc-ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 4567899999976643211100 0112333456677777777777888777665553
No 173
>PLN00198 anthocyanidin reductase; Provisional
Probab=24.60 E-value=2.7e+02 Score=25.08 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=38.1
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMT-RDDLFNINAGIVKSLCTAIANYCPHALVNMISN 99 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 99 (295)
++.+.++++|+||-+++.......+ ..+++..|+.-...+.+.+.+.+.-..++.+|.
T Consensus 73 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS 131 (338)
T PLN00198 73 SFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSS 131 (338)
T ss_pred HHHHHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeec
Confidence 3456788999999888743211122 234668899999999999887642234555544
No 174
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.59 E-value=1.1e+02 Score=25.00 Aligned_cols=48 Identities=29% Similarity=0.339 Sum_probs=27.6
Q ss_pred HHHcCcCCCCceeEEEEeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 022546 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESL 277 (295)
Q Consensus 219 ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s 277 (295)
|++++.+++ .++++-+.+. +...+.=|+. +|... . +||++|++.|+.+
T Consensus 103 AlLD~~~nG-vVltsI~~Re---~s~~YaK~I~---~G~S~---~-~LS~EE~eal~~A 150 (151)
T PF14584_consen 103 ALLDDNNNG-VVLTSIHSRE---ESRTYAKPIV---NGQSS---Y-PLSEEEKEALEKA 150 (151)
T ss_pred EEEeCCCCE-EEEEeeecCC---CcEEEEEEec---CCccc---c-cCCHHHHHHHHHh
Confidence 356665432 3333224322 2345555874 56554 3 7899999998865
No 175
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=24.56 E-value=1.6e+02 Score=24.35 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=31.7
Q ss_pred cCCCcEEEEcCCCCCC---------C-CCCH-HHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 022546 47 LEGSDVVIIPAGVPRK---------P-GMTR-DDLFNINAGIVKSLCTAIANYCPHALVNMIS 98 (295)
Q Consensus 47 l~daDiVvi~~g~~~~---------~-g~~r-~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 98 (295)
....|+|++..|..-- + +..+ ..-..+-..-+++++..+++.+|++.|++++
T Consensus 66 ~~~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~ 128 (204)
T cd04506 66 LKKADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVG 128 (204)
T ss_pred cccCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3488999997664310 0 1111 1112233455788888899888999887776
No 176
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=24.44 E-value=1.5e+02 Score=25.95 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.5
Q ss_pred CCchhhhcCCCcEEEE
Q 022546 40 EEQLGKALEGSDVVII 55 (295)
Q Consensus 40 t~d~~~al~daDiVvi 55 (295)
|+| .+|..|||+|+.
T Consensus 131 tdd-reavedad~iit 145 (343)
T COG4074 131 TDD-REAVEDADMIIT 145 (343)
T ss_pred cCc-HhhhcCCCeEEE
Confidence 455 699999999988
No 177
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.38 E-value=3.8e+02 Score=24.26 Aligned_cols=47 Identities=9% Similarity=0.318 Sum_probs=28.6
Q ss_pred Cchhhhc-CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-h-CCCeEEEEecCCccc
Q 022546 41 EQLGKAL-EGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAN-Y-CPHALVNMISNPVNS 103 (295)
Q Consensus 41 ~d~~~al-~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~-~p~a~viv~tNP~d~ 103 (295)
.|+.+++ .++|+||++.- ...+.++++.+.. + .++..++..+|=.+.
T Consensus 62 ~~~~~~~~~~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 62 SAIDEVLSDNATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CCHHHHHhCCCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 3555666 58999999742 1233344444443 2 467778888887743
No 178
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=24.37 E-value=1.9e+02 Score=25.48 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=39.2
Q ss_pred chhhhcCC--CcEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 022546 42 QLGKALEG--SDVVIIPAGVPR--KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISN 99 (295)
Q Consensus 42 d~~~al~d--aDiVvi~~g~~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 99 (295)
++.+++++ +|+||-+++... .....-...+..|+.-...+++.+.+...+..++.+|.
T Consensus 64 ~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss 125 (317)
T TIGR01181 64 LVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIST 125 (317)
T ss_pred HHHHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeec
Confidence 34556776 899999887432 11223445678899989999999888765556666553
No 179
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=24.29 E-value=3.2e+02 Score=24.17 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=35.8
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCccchHHHHHHHHHHhCCCC
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANY-CPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~ 119 (295)
++..+ .+++|+||++..... +.++.+.+..+ .++..++...|..+....+ .+. ++
T Consensus 59 ~~~~~-~~~~d~vila~k~~~----------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l----~~~---~~ 114 (304)
T PRK06522 59 DDPAE-LGPQDLVILAVKAYQ----------------LPAALPSLAPLLGPDTPVLFLQNGVGHLEEL----AAY---IG 114 (304)
T ss_pred CChhH-cCCCCEEEEeccccc----------------HHHHHHHHhhhcCCCCEEEEecCCCCcHHHH----HHh---cC
Confidence 34434 499999999753221 22333334333 4677889999998766543 222 55
Q ss_pred CCCeee
Q 022546 120 EKKLFG 125 (295)
Q Consensus 120 ~~kviG 125 (295)
+.++++
T Consensus 115 ~~~i~~ 120 (304)
T PRK06522 115 PERVLG 120 (304)
T ss_pred cccEEE
Confidence 556664
No 180
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=24.19 E-value=3.2e+02 Score=24.76 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=29.8
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCccchH
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANY-CPHALVNMISNPVNSTV 105 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t 105 (295)
++. ++++++|+||++...+. ..++++.+..+ .++.+++..+|..+...
T Consensus 66 ~~~-~~~~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~~ 114 (341)
T PRK08229 66 TDP-AALATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNAD 114 (341)
T ss_pred cCh-hhccCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcHH
Confidence 344 67899999999764221 11223344444 46778888899876543
No 181
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=24.15 E-value=1.8e+02 Score=23.04 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=13.2
Q ss_pred HHHHHHHhhCCCeEEEEecCCccc
Q 022546 80 SLCTAIANYCPHALVNMISNPVNS 103 (295)
Q Consensus 80 ~i~~~i~~~~p~a~viv~tNP~d~ 103 (295)
.+...+.+.+++.-++++.|-.|.
T Consensus 93 ~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 93 KWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred HHHHHHHHhCCCCcEEEEEECccC
Confidence 334444445555556666666664
No 182
>PRK02628 nadE NAD synthetase; Reviewed
Probab=24.05 E-value=3e+02 Score=28.14 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCccchH--HHHHHHHHHhCCCCCCCeeecchh------hHHHHHHHHHhhcCCCCc
Q 022546 76 GIVKSLCTAIANYCPHALVNMISNPVNSTV--PIAAEVFKKAGTYDEKKLFGVTTL------DVVRAKTFYAGKVNVPVA 147 (295)
Q Consensus 76 ~i~~~i~~~i~~~~p~a~viv~tNP~d~~t--~~~~~~~k~sg~~~~~kviG~t~l------d~~R~~~~la~~l~v~~~ 147 (295)
..+..+.+.+++.+.++++|=+|.=.|... .++..+.+.-| .++.+|+|+++. .+...-..+|+.||++..
T Consensus 347 ~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg-~~~~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~ 425 (679)
T PRK02628 347 IQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLG-LPRKNILAYTMPGFATTDRTKNNAVALMKALGVTAR 425 (679)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhC-CCcceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEE
Confidence 355566677777778899999999988653 23322222235 667899998653 234556788999998876
Q ss_pred cce
Q 022546 148 EVN 150 (295)
Q Consensus 148 ~v~ 150 (295)
.++
T Consensus 426 ~i~ 428 (679)
T PRK02628 426 EID 428 (679)
T ss_pred EEE
Confidence 664
No 183
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=23.93 E-value=1.2e+02 Score=23.84 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=31.4
Q ss_pred CcCeEEEEeCCC--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCC
Q 022546 6 LVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPR 61 (295)
Q Consensus 6 ~~~ei~L~D~~~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~ 61 (295)
-+++|++++++. ++..+..+ ....+..... +++.+.+.++|+||.+.+.+.
T Consensus 35 g~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~~-~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 35 GAKEITIVNRTPERAEALAEEF----GGVNIEAIPL-EDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TSSEEEEEESSHHHHHHHHHHH----TGCSEEEEEG-GGHCHHHHTESEEEE-SSTTS
T ss_pred CCCEEEEEECCHHHHHHHHHHc----CccccceeeH-HHHHHHHhhCCeEEEecCCCC
Confidence 467899999865 44444444 1223444332 456678899999999766553
No 184
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=23.72 E-value=94 Score=28.42 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=15.4
Q ss_pred CCchhhhcCCCcEEEEcCC
Q 022546 40 EEQLGKALEGSDVVIIPAG 58 (295)
Q Consensus 40 t~d~~~al~daDiVvi~~g 58 (295)
++|+.+|+++||+|.....
T Consensus 204 ~~d~~ea~~~aDvvyt~~~ 222 (305)
T PRK00856 204 HTDLDEVIEDADVVMMLRV 222 (305)
T ss_pred ECCHHHHhCCCCEEEECCc
Confidence 4688899999998887553
No 185
>PRK13529 malate dehydrogenase; Provisional
Probab=23.64 E-value=1.7e+02 Score=29.23 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=49.0
Q ss_pred CchhhhcCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcc---chHHHHHHHHHHh
Q 022546 41 EQLGKALEGS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVN---STVPIAAEVFKKA 115 (295)
Q Consensus 41 ~d~~~al~da--DiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d---~~t~~~~~~~k~s 115 (295)
.++.++++++ |++|=+.+.+. -+=+++++.|.+++++.+|+-.|||.. +..+- +++.+
T Consensus 372 ~~L~e~v~~~kPtvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~---a~~~T 434 (563)
T PRK13529 372 ISLLEVVRNVKPTVLIGVSGQPG--------------AFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPED---LIAWT 434 (563)
T ss_pred CCHHHHHhccCCCEEEEecCCCC--------------CCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHH---HHHhh
Confidence 4678999999 99887765442 122467788888999999999999985 44433 35654
Q ss_pred CCCCCCCeeec-chhhH
Q 022546 116 GTYDEKKLFGV-TTLDV 131 (295)
Q Consensus 116 g~~~~~kviG~-t~ld~ 131 (295)
. .+-+|++ +-.+.
T Consensus 435 ~---Grai~AtGspf~p 448 (563)
T PRK13529 435 D---GRALVATGSPFAP 448 (563)
T ss_pred c---CCEEEEECCCCCC
Confidence 2 3568887 44444
No 186
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=23.61 E-value=3e+02 Score=24.38 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=37.4
Q ss_pred chhhhcCCCcEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEec
Q 022546 42 QLGKALEGSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKSLCTAIANY-CPHALVNMIS 98 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~-g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t 98 (295)
++.++++++|+||-+++..... .....+.+..|+.-...+.+.+.+. +.. .+|.+|
T Consensus 69 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~S 126 (322)
T PLN02662 69 SFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTS 126 (322)
T ss_pred hHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcc
Confidence 3557789999999988753211 1222367788999999999988776 433 455443
No 187
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.48 E-value=2.2e+02 Score=24.31 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhC-CCeEEEEecCCccchH
Q 022546 75 AGIVKSLCTAIANYC-PHALVNMISNPVNSTV 105 (295)
Q Consensus 75 ~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t 105 (295)
..-.++..+.+.+.+ |+.++.+++|-+|+..
T Consensus 93 F~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 93 FEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 344556666666665 7888999999999886
No 188
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=23.40 E-value=1.5e+02 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=14.5
Q ss_pred HHHHHHhhCCCeEEEEecCCccc
Q 022546 81 LCTAIANYCPHALVNMISNPVNS 103 (295)
Q Consensus 81 i~~~i~~~~p~a~viv~tNP~d~ 103 (295)
..+.+.+++|+..+++++|=+|+
T Consensus 107 w~~~i~~~~~~~piilVgNK~DL 129 (232)
T cd04174 107 WKAEIMDYCPSTRILLIGCKTDL 129 (232)
T ss_pred HHHHHHHhCCCCCEEEEEECccc
Confidence 34445555666667777777774
No 189
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=23.40 E-value=2.2e+02 Score=29.41 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=39.4
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccch-HHHHHHHHHHhCCC
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNST-VPIAAEVFKKAGTY 118 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~-t~~~~~~~k~sg~~ 118 (295)
+|+ ++++|||+||=+. ..+.++=+++-..+.+++ |++ |+.||-..+- +.+ .....
T Consensus 385 ~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~l----a~~~~-- 441 (715)
T PRK11730 385 LDY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLL----AKALK-- 441 (715)
T ss_pred CCH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHH----HhhcC--
Confidence 465 7899999988653 223344456666777777 454 4488877754 333 23333
Q ss_pred CCCCeeec
Q 022546 119 DEKKLFGV 126 (295)
Q Consensus 119 ~~~kviG~ 126 (295)
.|.|++|+
T Consensus 442 ~p~r~~g~ 449 (715)
T PRK11730 442 RPENFCGM 449 (715)
T ss_pred CCccEEEE
Confidence 35688886
No 190
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=23.12 E-value=3.1e+02 Score=24.20 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=39.4
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISN 99 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 99 (295)
++.++++++|+||-+++.......+.......|+.....+++.+.+.+-. .++.+|.
T Consensus 57 ~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 113 (328)
T TIGR03466 57 SLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSS 113 (328)
T ss_pred HHHHHHhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEec
Confidence 45567889999999876432233445667788998889999988876533 4555554
No 191
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=22.89 E-value=2.5e+02 Score=27.61 Aligned_cols=49 Identities=24% Similarity=0.361 Sum_probs=27.1
Q ss_pred CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchH
Q 022546 41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTV 105 (295)
Q Consensus 41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t 105 (295)
+|+ +++++||+||-+.-- +..+=+.+-..+.+++|... |+.||-..+-.
T Consensus 77 ~~~-~~l~~aDlVIEav~E--------------~~~vK~~vf~~l~~~~~~~~-IlasnTStl~i 125 (503)
T TIGR02279 77 TDL-HALADAGLVIEAIVE--------------NLEVKKALFAQLEELCPADT-IIASNTSSLSI 125 (503)
T ss_pred CCH-HHhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCe-EEEECCCCCCH
Confidence 455 678999999987421 11222222234667775443 35677666443
No 192
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=22.73 E-value=27 Score=27.86 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=30.6
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 022546 52 VVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISN 99 (295)
Q Consensus 52 iVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 99 (295)
+||++||...+-|....-+-...-+++..+...+.+.+++-++++..+
T Consensus 1 ~vILa~G~s~Rmg~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMGGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGTSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST
T ss_pred CEEECCcCcccCCCCccceeECCccHHHHHHHHhhccCCceEEEecCh
Confidence 467788876655554333333555778888888888877665554444
No 193
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=22.58 E-value=1.7e+02 Score=24.95 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCeEEEEecCCccch
Q 022546 79 KSLCTAIANYCPHALVNMISNPVNST 104 (295)
Q Consensus 79 ~~i~~~i~~~~p~a~viv~tNP~d~~ 104 (295)
++..+.+.+++++.-+++++|-.|..
T Consensus 105 ~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 105 PTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred HHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 34555566666777788888888863
No 194
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=22.36 E-value=4.2e+02 Score=21.36 Aligned_cols=54 Identities=19% Similarity=0.420 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhh
Q 022546 73 INAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130 (295)
Q Consensus 73 ~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld 130 (295)
-+....+.+.+.|+++.|| +|+.|-|.-.-..+ .. +|..|.++.-.++.+ |..+
T Consensus 73 ~~~~~~~~l~~~l~~~~PD--~IIsThp~~~~~~l-~~-lk~~~~~~~~p~~tvvTD~~ 127 (169)
T PF06925_consen 73 LSRLFARRLIRLLREFQPD--LIISTHPFPAQVPL-SR-LKRRGRLPNIPVVTVVTDFD 127 (169)
T ss_pred HHHHHHHHHHHHHhhcCCC--EEEECCcchhhhHH-HH-HHHhhcccCCcEEEEEcCCC
Confidence 3455566788888999999 56778885222111 11 344443544556666 7664
No 195
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.04 E-value=5.8e+02 Score=22.92 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=37.9
Q ss_pred hhhhcCCCcEEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHH
Q 022546 43 LGKALEGSDVVIIPAGVPRKPGM-TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106 (295)
Q Consensus 43 ~~~al~daDiVvi~~g~~~~~g~-~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~ 106 (295)
....+-+.|+|-+.+...-.+|. +..+...+ ..+++..+.+..++. ++++.|-+..++.
T Consensus 24 i~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~----~~~i~~~l~~~~ik~-lVIACNTASa~al 83 (269)
T COG0796 24 IRRQLPDEDIIYVGDTARFPYGEKSEEEIRER----TLEIVDFLLERGIKA-LVIACNTASAVAL 83 (269)
T ss_pred HHHHCCCCcEEEEecCCCCCCCCCCHHHHHHH----HHHHHHHHHHcCCCE-EEEecchHHHHHH
Confidence 35667888888886554445665 45555444 455666666766765 5668888776653
No 196
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.01 E-value=3.4e+02 Score=20.15 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=15.4
Q ss_pred Ceeec-c-hhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546 122 KLFGV-T-TLDVVRAKTFYAGKVNVPVAEVNVPVIGGH 157 (295)
Q Consensus 122 kviG~-t-~ld~~R~~~~la~~l~v~~~~v~~~viG~h 157 (295)
+++|+ + ...+...-..+++...-...++...+-|.|
T Consensus 53 d~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 53 DVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp SEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred cEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 56666 4 333333334444443333333444444433
No 197
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=21.91 E-value=4.2e+02 Score=22.26 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=32.6
Q ss_pred CCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546 48 EGSDVVII-PAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV 126 (295)
Q Consensus 48 ~daDiVvi-~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~ 126 (295)
+++|+|+| |+|... + +...+.++.+-+....|.-++++++-...--... ++.++...++...+| +
T Consensus 82 ~~~D~vlIDT~Gr~~-----~------d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~--~~~~~~~~~~~~~lI-l 147 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSP-----R------DEELLEELKKLLEALNPDEVHLVLSATMGQEDLE--QALAFYEAFGIDGLI-L 147 (196)
T ss_dssp TTSSEEEEEE-SSSS-----T------HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH--HHHHHHHHSSTCEEE-E
T ss_pred cCCCEEEEecCCcch-----h------hHHHHHHHHHHhhhcCCccceEEEecccChHHHH--HHHHHhhcccCceEE-E
Confidence 56999999 766442 1 1222233333333336776666664443322211 112221114445454 5
Q ss_pred chhhH
Q 022546 127 TTLDV 131 (295)
Q Consensus 127 t~ld~ 131 (295)
|-+|+
T Consensus 148 TKlDe 152 (196)
T PF00448_consen 148 TKLDE 152 (196)
T ss_dssp ESTTS
T ss_pred EeecC
Confidence 77887
No 198
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=21.84 E-value=6.4e+02 Score=23.26 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546 48 EGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAN-YCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV 126 (295)
Q Consensus 48 ~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~ 126 (295)
-+-++||..+| ....|.-. -+.-..+|..+.++ ..||. +++++--..+.+-++ ..++-.-|..+|||+
T Consensus 145 g~kpyvIp~GG-~~~~g~lG------yv~~a~Ei~~Q~~~~~~fD~-vVva~gs~gT~AGl~---~g~~~~~~~~~ViG~ 213 (323)
T COG2515 145 GGKPYVIPEGG-SSPLGALG------YVRLALEIAEQAEQLLKFDS-VVVAPGSGGTHAGLL---VGLAQLGPDVEVIGI 213 (323)
T ss_pred CCCCcEeccCC-cCcccccc------HHHHHHHHHHHHhhccCCCE-EEEeCCCcchHHHHH---HHhhhccCCCceEEE
Confidence 34566777666 22223211 13445566666665 67874 566776677776554 566531257899999
Q ss_pred -chhhHHHHHHHH
Q 022546 127 -TTLDVVRAKTFY 138 (295)
Q Consensus 127 -t~ld~~R~~~~l 138 (295)
|.-+...++..+
T Consensus 214 ~v~~~~~~~~~qv 226 (323)
T COG2515 214 DVSADPEKLKEQV 226 (323)
T ss_pred eecCCHHHHHHHH
Confidence 766665555443
No 199
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=21.78 E-value=1e+02 Score=25.43 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=32.3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCc
Q 022546 52 VVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPV 101 (295)
Q Consensus 52 iVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 101 (295)
.||++||..++-|.....+-..+-+++...+....+...+.++| ++|+.
T Consensus 3 ~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~v-v~~~~ 51 (190)
T TIGR03202 3 AIYLAAGQSRRMGENKLALPLGETTLGSASLKTALSSRLSKVIV-VIGEK 51 (190)
T ss_pred EEEEcCCccccCCCCceeceeCCccHHHHHHHHHHhCCCCcEEE-EeCCc
Confidence 47778888877787655444567788888776665555555554 44554
No 200
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=21.77 E-value=1.8e+02 Score=25.06 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=30.4
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchH
Q 022546 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTV 105 (295)
Q Consensus 46 al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t 105 (295)
.++++|+++++-..... +.++.+. ..+...+..++|+.-+++++|=+|+-.
T Consensus 69 ~~~~~d~illvfdis~~---~Sf~~i~------~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 69 AYPDSDAVLICFDISRP---ETLDSVL------KKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred hccCCCEEEEEEECCCH---HHHHHHH------HHHHHHHHhhCCCCCEEEEEECccccc
Confidence 46788888886543321 1121111 123345566778888888999998753
No 201
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=21.76 E-value=1.7e+02 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=30.3
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccch
Q 022546 45 KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNST 104 (295)
Q Consensus 45 ~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~ 104 (295)
+-++.|||||.-. - -..+++++..|.++..+ +++++|-..+.
T Consensus 131 ~Ll~eADIVVTNP------P----------FSLFrEyv~~Li~~~Kk--FlIIGN~NaiT 172 (336)
T PF13651_consen 131 ELLKEADIVVTNP------P----------FSLFREYVAQLIEYDKK--FLIIGNINAIT 172 (336)
T ss_pred HHHhcCCEEEeCC------C----------cHHHHHHHHHHHHhCCC--EEEEecccccc
Confidence 5578899988842 1 24678899999999766 77788874443
No 202
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.66 E-value=70 Score=26.47 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=23.9
Q ss_pred hhcCCCcEEEEcCCCCCCC-CCCH---HHHHHHHHHHHHHHHHHHHhh
Q 022546 45 KALEGSDVVIIPAGVPRKP-GMTR---DDLFNINAGIVKSLCTAIANY 88 (295)
Q Consensus 45 ~al~daDiVvi~~g~~~~~-g~~r---~~~~~~n~~i~~~i~~~i~~~ 88 (295)
++++.+|+||+++|....+ +.++ ...+.+.+....+....|+++
T Consensus 54 ~~~~~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~e~~~~i~~~ 101 (170)
T cd00885 54 RASERADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDEEALERIEAR 101 (170)
T ss_pred HHHhCCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 4567899999999865322 2332 223334444444444444443
No 203
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=21.34 E-value=1.8e+02 Score=24.51 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=12.1
Q ss_pred HHHhhC-CCeEEEEecCCccc
Q 022546 84 AIANYC-PHALVNMISNPVNS 103 (295)
Q Consensus 84 ~i~~~~-p~a~viv~tNP~d~ 103 (295)
.+.+++ ++.-+++++|=+|+
T Consensus 97 ~i~~~~~~~~piilVgNK~DL 117 (202)
T cd04120 97 MIDKYASEDAELLLVGNKLDC 117 (202)
T ss_pred HHHHhCCCCCcEEEEEECccc
Confidence 344443 45567777787774
No 204
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=21.31 E-value=2.1e+02 Score=22.29 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=3.2
Q ss_pred CCCcEEEE
Q 022546 48 EGSDVVII 55 (295)
Q Consensus 48 ~daDiVvi 55 (295)
+++|.+++
T Consensus 74 ~~~d~ii~ 81 (164)
T cd04101 74 ESPSVFIL 81 (164)
T ss_pred CCCCEEEE
Confidence 33444443
No 205
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.29 E-value=2.4e+02 Score=27.21 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=35.8
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHH
Q 022546 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106 (295)
Q Consensus 46 al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~ 106 (295)
..++.|+|.+++..+. .+...++++.+++..|+..|++.+..+..+..
T Consensus 65 ~~~~~Dlv~is~~t~~-------------~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe 112 (472)
T TIGR03471 65 IAKDYDLVVLHTSTPS-------------FPSDVKTAEALKEQNPATKIGFVGAHVAVLPE 112 (472)
T ss_pred HhcCCCEEEEECCCcc-------------hHHHHHHHHHHHHhCCCCEEEEECCCcccCHH
Confidence 4568999999765432 35567788999999999988877777766654
No 206
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=21.18 E-value=1.2e+02 Score=25.47 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 75 AGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 75 ~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
-++.+.|+..|.++.|++.++++.|-
T Consensus 88 ~~~a~kIadki~~~~~~a~ll~vdn~ 113 (182)
T cd08060 88 SPVAKKIADKIAENFSNACLLMVDNE 113 (182)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEeCc
Confidence 37889999999999999999999884
No 207
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=21.17 E-value=1.9e+02 Score=26.67 Aligned_cols=52 Identities=8% Similarity=0.100 Sum_probs=29.5
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHH
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~ 106 (295)
++.+++++||+|+++.-.. + + +..++. ...+....|++++|+++-=.-+-..
T Consensus 191 ~l~ell~~aDiVil~lP~t--~-~--------t~~li~--~~~l~~mk~gavlIN~aRG~~vd~~ 242 (330)
T PRK12480 191 SVKEAIKDADIISLHVPAN--K-E--------SYHLFD--KAMFDHVKKGAILVNAARGAVINTP 242 (330)
T ss_pred CHHHHHhcCCEEEEeCCCc--H-H--------HHHHHh--HHHHhcCCCCcEEEEcCCccccCHH
Confidence 5678999999999964211 1 1 111111 1233333578899998765434333
No 208
>PRK08818 prephenate dehydrogenase; Provisional
Probab=21.13 E-value=1.7e+02 Score=27.52 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=20.6
Q ss_pred HHhhhCCCCCCeEEEee----CCCchhhhcCCCcEEEEcC
Q 022546 22 AADVSHINSPAQVEGYA----GEEQLGKALEGSDVVIIPA 57 (295)
Q Consensus 22 ~~Dl~~~~~~~~v~~~~----~t~d~~~al~daDiVvi~~ 57 (295)
+..|.+.. ...|.++. +..++.+.+++||+||++.
T Consensus 21 A~alk~~~-~~~V~g~D~~d~~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 21 ARFLRTRM-QLEVIGHDPADPGSLDPATLLQRADVLIFSA 59 (370)
T ss_pred HHHHHhcC-CCEEEEEcCCccccCCHHHHhcCCCEEEEeC
Confidence 44454331 23555542 1234567789999999974
No 209
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=20.85 E-value=2.4e+02 Score=21.83 Aligned_cols=13 Identities=15% Similarity=0.572 Sum_probs=6.0
Q ss_pred CCeEEEEecCCcc
Q 022546 90 PHALVNMISNPVN 102 (295)
Q Consensus 90 p~a~viv~tNP~d 102 (295)
++.-++++.|-+|
T Consensus 104 ~~~pivvv~nK~D 116 (164)
T smart00175 104 PNVVIMLVGNKSD 116 (164)
T ss_pred CCCeEEEEEEchh
Confidence 3344444555444
No 210
>PLN02650 dihydroflavonol-4-reductase
Probab=20.83 E-value=3.2e+02 Score=24.78 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=38.7
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMT-RDDLFNINAGIVKSLCTAIANYCPHALVNMISN 99 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 99 (295)
.+.+.++++|+||-+++.......+ ..+.+..|+.-...+.+.+.+++.-..+|.+|-
T Consensus 70 ~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS 128 (351)
T PLN02650 70 SFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSS 128 (351)
T ss_pred hHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 3456788999999988643211112 235678899999999999887653345666654
No 211
>PLN02928 oxidoreductase family protein
Probab=20.73 E-value=94 Score=28.89 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=28.7
Q ss_pred chhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022546 42 QLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNP 100 (295)
Q Consensus 42 d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 100 (295)
++++.++.||+|++..-.. + + |-.++. .+.+.+..|.+++||++--
T Consensus 219 ~L~ell~~aDiVvl~lPlt--~-~--------T~~li~--~~~l~~Mk~ga~lINvaRG 264 (347)
T PLN02928 219 DIYEFAGEADIVVLCCTLT--K-E--------TAGIVN--DEFLSSMKKGALLVNIARG 264 (347)
T ss_pred CHHHHHhhCCEEEECCCCC--h-H--------hhcccC--HHHHhcCCCCeEEEECCCc
Confidence 5678999999999964211 1 1 111111 2344555689999999754
No 212
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=20.58 E-value=94 Score=28.34 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=14.1
Q ss_pred CCchhhhcCCCcEEEEc
Q 022546 40 EEQLGKALEGSDVVIIP 56 (295)
Q Consensus 40 t~d~~~al~daDiVvi~ 56 (295)
++|+++++++||+|...
T Consensus 207 ~~d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 207 TESLEEVIDEADVLYVT 223 (301)
T ss_pred ECCHHHHhCCCCEEEEC
Confidence 36789999999988774
No 213
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=20.39 E-value=2.3e+02 Score=26.33 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCc------cchHHHHHHHHH
Q 022546 75 AGIVKSLCTAIANYCPHALVNMISNPV------NSTVPIAAEVFK 113 (295)
Q Consensus 75 ~~i~~~i~~~i~~~~p~a~viv~tNP~------d~~t~~~~~~~k 113 (295)
-+.+..+++.++.|++|||+|++=++. +-|+.++.++.+
T Consensus 89 ~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~L~~ 133 (339)
T cd06547 89 FPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLRYLKA 133 (339)
T ss_pred hHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHHHHHH
Confidence 678888999999999999999995544 445555444433
No 214
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.37 E-value=3.5e+02 Score=24.51 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=32.3
Q ss_pred CeEEEEeCCCc--hhHHHhhhCCCCCCeEEEe-eCCCchhhhcCCCcEEEEcCCCCC
Q 022546 8 SSLSLYDIANT--PGVAADVSHINSPAQVEGY-AGEEQLGKALEGSDVVIIPAGVPR 61 (295)
Q Consensus 8 ~ei~L~D~~~~--~~~~~Dl~~~~~~~~v~~~-~~t~d~~~al~daDiVvi~~g~~~ 61 (295)
.+++++..... ..+++=|.+.. ..|+.. +.|.++.+.+++||+||.+.|.+.
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~g--atVtv~~s~t~~l~~~~~~ADIVI~avg~~~ 213 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKN--ATVTLTHSRTRNLAEVARKADILVVAIGRGH 213 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCC--CEEEEECCCCCCHHHHHhhCCEEEEecCccc
Confidence 45666665332 33444454432 355543 445678888999999999888653
No 215
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.35 E-value=1.9e+02 Score=24.85 Aligned_cols=32 Identities=0% Similarity=-0.119 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEecCCcc
Q 022546 71 FNINAGIVKSLCTAIANYCPHALVNMISNPVN 102 (295)
Q Consensus 71 ~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d 102 (295)
+..+.+-++++.+.+++.+++..+++-++|.+
T Consensus 149 ~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~ 180 (213)
T cd02069 149 LVPSLDEMVEVAEEMNRRGIKIPLLIGGAATS 180 (213)
T ss_pred hhccHHHHHHHHHHHHhcCCCCeEEEEChhcC
Confidence 34667888999999998888888888898876
No 216
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.22 E-value=1.9e+02 Score=26.11 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=31.9
Q ss_pred CeEEEEeCCCchh--HHHhhhCCCCCCeEEEe-eCCCchhhhcCCCcEEEEcCCCCC
Q 022546 8 SSLSLYDIANTPG--VAADVSHINSPAQVEGY-AGEEQLGKALEGSDVVIIPAGVPR 61 (295)
Q Consensus 8 ~ei~L~D~~~~~~--~~~Dl~~~~~~~~v~~~-~~t~d~~~al~daDiVvi~~g~~~ 61 (295)
.+++.+......| .++=|... +..|+.. +.|.|+.+.++.|||||.+.|.|.
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~--~atVtichs~T~~l~~~~~~ADIvI~AvG~p~ 211 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH--DATVTIAHSKTRNLKQLTKEADILVVAVGVPH 211 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEECCCCCCHHHHHhhCCEEEEccCCcC
Confidence 4566666544222 23323322 2455544 456788888999999999988663
No 217
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=20.16 E-value=2.2e+02 Score=22.49 Aligned_cols=51 Identities=16% Similarity=0.384 Sum_probs=30.3
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchH
Q 022546 46 ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTV 105 (295)
Q Consensus 46 al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t 105 (295)
.++++|++|++-.... + +-+. + +...+.+.+.++.|+.-+++++|=+|...
T Consensus 66 ~~~~~d~~ilv~d~~~-----~-~s~~-~--~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 66 SYPDTDVFLICFSVDS-----P-ASFE-N--VKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred hcCCCCEEEEEEECCC-----H-HHHH-H--HHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 4678888888643321 1 1111 1 11234455566677777888999999764
No 218
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=20.09 E-value=5.5e+02 Score=24.53 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCCCCcCeEEEEeCCCc------hhH-HHhhhCCC-CCCeEEEeeCC--CchhhhcCCCcEEEEcCCCCCCCCCCHHHHH
Q 022546 2 KLDPLVSSLSLYDIANT------PGV-AADVSHIN-SPAQVEGYAGE--EQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71 (295)
Q Consensus 2 ~~~~~~~ei~L~D~~~~------~~~-~~Dl~~~~-~~~~v~~~~~t--~d~~~al~daDiVvi~~g~~~~~g~~r~~~~ 71 (295)
...|.+.+|+|+|.++. ++. ..++++.+ .++++++++.. +=+..+-..-|+||+----|+.+.+-|+
T Consensus 308 lkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rl--- 384 (508)
T COG4262 308 LKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRL--- 384 (508)
T ss_pred HhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhh---
Confidence 35678999999999871 222 23455444 46888887522 1122333466888885555555555443
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEe
Q 022546 72 NINAGIVKSLCTAIANYCPHALVNMI 97 (295)
Q Consensus 72 ~~n~~i~~~i~~~i~~~~p~a~viv~ 97 (295)
-..+.++-... +.+++|++++-
T Consensus 385 -YS~eFY~ll~~---~l~e~Gl~VvQ 406 (508)
T COG4262 385 -YSVEFYRLLSR---HLAETGLMVVQ 406 (508)
T ss_pred -hhHHHHHHHHH---hcCcCceEEEe
Confidence 12333333333 45678877654
Done!