RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022546
(295 letters)
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 453 bits (1168), Expect = e-162
Identities = 194/293 (66%), Positives = 228/293 (77%), Gaps = 1/293 (0%)
Query: 1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
MK++PLVS L LYD+ N PGV AD+SH+++ A V G+ G++QL AL G D++I+PAGVP
Sbjct: 28 MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
RKPGMTRDDLF INAGIVK+LC IA CP A+VN+ISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 88 RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDP 147
Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
K+L GVT LDVVRA TF A + + +V+VPV+GGHAGVTILPL SQ P ++ + EE
Sbjct: 148 KRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-SSFTQEE 206
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
I LT R Q+GGTEVVEAKAG GSATLSMAYA FADACL GL G ++EC FV S V
Sbjct: 207 ISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQV 266
Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
TELPFFASKVRLG+NG +EV LGPL++YE+ GLE K EL SIEKG+ F
Sbjct: 267 TELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 319
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 450 bits (1160), Expect = e-161
Identities = 169/295 (57%), Positives = 216/295 (73%), Gaps = 1/295 (0%)
Query: 1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+K PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL L+G DVV+IPAGVP
Sbjct: 20 LKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
RKPGMTRDDLFN NA IV +L A A +CP A++ +ISNPVNST+PI AEVFKK G Y+
Sbjct: 80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNP 139
Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
K+FGVTTLD+VRA F A + A V+VPVIGGHAG TI+PL SQ TPK + ++
Sbjct: 140 NKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPK-VDFPQDQ 198
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
+ LT R Q+ GTEVV+AKAG GSATLSMAYAGA F + + +NG +VEC+FV+S
Sbjct: 199 LSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 258
Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS 295
T+ P+F++ + LGK G ++ LG+G +S +E++ + PELKASI+KG +F
Sbjct: 259 TDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNM 313
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 438 bits (1128), Expect = e-156
Identities = 154/291 (52%), Positives = 196/291 (67%), Gaps = 4/291 (1%)
Query: 5 PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
P S LSLYDIA TPGVA D+SHI + +++G++GE+ ALEG+DVV+I AGV RKP
Sbjct: 25 PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED-ATPALEGADVVLISAGVARKP 83
Query: 64 GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
GM R DLFN+NAGIVK+L +A CP A + +I+NPVN+TV IAAEV KKAG YD+ KL
Sbjct: 84 GMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKL 143
Query: 124 FGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
FGVTTLD++R+ TF A EV VPVIGGH+GVTILPL SQ + +++E+
Sbjct: 144 FGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVSFTEQEVAD 201
Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
LTKR Q+ GTEVVEAKAG GSATLSM A A F + + L G +VEC +V+
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA 261
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
FF+ + LGKNG +E +G LS +E+ LE + LK I G +F N+
Sbjct: 262 RFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 166 bits (423), Expect = 1e-49
Identities = 69/302 (22%), Positives = 113/302 (37%), Gaps = 30/302 (9%)
Query: 6 LVSSLSLYDIA-NTP-GVAADVSHINSPA-QVEGYAGEEQLGKALEGSDVVIIPAGVPRK 62
L +L LYD GVA ++ H + + + +AL + ++ G PRK
Sbjct: 33 LTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIK---EALTDAKYIVSSGGAPRK 89
Query: 63 PGMTRDDLFNINAGIVKSLCTAIANYCPHAL-VNMISNPVNSTVPIAAEVFKKAGTYDEK 121
GMTR+DL NA I L I +YCP V +I NP + T + +G
Sbjct: 90 EGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT---LIYSG-LKPS 145
Query: 122 KLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTILPLFSQAT---------P 171
++ + LD R ++ A + + V N GGH G + S A
Sbjct: 146 QVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH-GEQMAVFASTAKVNGTPLTDLI 204
Query: 172 KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIV 231
++ L++E+ L +R GG +++ + S+ S +Y A + G
Sbjct: 205 GTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSPSYVSIEMIRAAMGGEAFR--WP 260
Query: 232 ECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL----ESLKPELKASIEK 287
+V E A + + K+G ++ E+ L L I
Sbjct: 261 AGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNEAERAALKESYSHLAKLRDEVIAM 320
Query: 288 GI 289
GI
Sbjct: 321 GI 322
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 147 bits (374), Expect = 1e-42
Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 55/303 (18%)
Query: 12 LYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIPAGVPRK 62
L DI G A D+ +V G YA SDV+++ +G PRK
Sbjct: 31 LLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-------DTANSDVIVVTSGAPRK 83
Query: 63 PGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKK 122
PGM+R+DL +NA I ++ + A P+A++ M++NP++ + + + +++
Sbjct: 84 PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTYLAAEVSGFPKER 139
Query: 123 LFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSNNLS 177
+ G LD R +TF A + V V +V ++GGH G ++PL + P S ++
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFSCISGIPVSEFIA 198
Query: 178 DEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CLMGL 224
+ + + +RT+ GG E+V GSA + A A A +A L G
Sbjct: 199 PDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQ 257
Query: 225 NGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKAS 284
G+ DI +F V LG G +++L L PL++ E L + ++A+
Sbjct: 258 YGLNDI--------------YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRAT 302
Query: 285 IEK 287
++
Sbjct: 303 LDT 305
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 147 bits (373), Expect = 2e-42
Identities = 79/302 (26%), Positives = 133/302 (44%), Gaps = 51/302 (16%)
Query: 12 LYDIANTPGVAA----DVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
L DI D+ A + G + SDVV+I AG+ RKP
Sbjct: 37 LVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYA----DTADSDVVVITAGIARKP 92
Query: 64 GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
GM+RDDL N+ I+KS+ IA + P+A++ +++NPV+ K + ++++
Sbjct: 93 GMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERV 148
Query: 124 FGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSNNLSD 178
G LD R +TF A ++N+ V ++ V+GGH G ++PL + P +
Sbjct: 149 IGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPK 207
Query: 179 EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CLMGLN 225
E ++A+ +RT+ GG E+V G GSA + A + +A L G
Sbjct: 208 ERLEAIVERTRKGGGEIVG-LLGNGSAYYAPAASLVEMTEAILKDQRRVLPAIAYLEGEY 266
Query: 226 GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI 285
G D+ + V LG NG ++++ L L EK+ L+ ++ +
Sbjct: 267 GYSDL--------------YLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVESVRNVM 311
Query: 286 EK 287
+
Sbjct: 312 KV 313
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 147 bits (373), Expect = 2e-42
Identities = 71/303 (23%), Positives = 121/303 (39%), Gaps = 56/303 (18%)
Query: 12 LYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIPAGVPRK 62
L G A D++H + ++ G Y + GSD+V++ AG+ RK
Sbjct: 28 LIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYE-------DMRGSDIVLVTAGIGRK 80
Query: 63 PGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKK 122
PGMTR+ L NA + L I Y A+V + +NPV+ V K + ++
Sbjct: 81 PGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD----AMTYVMYKKTGFPRER 136
Query: 123 LFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSNNLS 177
+ G LD R + + K+ V VN V+G H G + P+ ++ P + +S
Sbjct: 137 VIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH-GQKMFPVPRLSSVGGVPLEHLMS 195
Query: 178 DEEIKALTKRTQDGGTEVVEAKAGK-----GSATLSMAYAGAVFAD--------ACLMGL 224
EEI+ + T + G ++ E + + + A+ D L G
Sbjct: 196 KEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLT--VEAIKRDSKRIYPYSLYLQGE 253
Query: 225 NGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKAS 284
G DI +GK+G + ++ L PL++ EK+ + +K
Sbjct: 254 YGYNDI--------------VAEVPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKL 298
Query: 285 IEK 287
+E
Sbjct: 299 VET 301
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 146 bits (372), Expect = 3e-42
Identities = 76/306 (24%), Positives = 130/306 (42%), Gaps = 50/306 (16%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
+ + + DI + G A D+ +V G E SDV II AG+
Sbjct: 24 VAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYG----PTEDSDVCIITAGL 79
Query: 60 PRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
PR PGM+RDDL N IV + P + + +++NP++ + V +A +
Sbjct: 80 PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD----VMTYVAYEASGFP 135
Query: 120 EKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSN 174
++ G+ LD R ++F A +++V V +V ++GGH G T++PL T P
Sbjct: 136 TNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYTTVGGIPVPQ 194
Query: 175 NLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CL 221
+ D I+ + +RT+ G E+V+ SA + A A +A
Sbjct: 195 LIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAAAAEMTEAILKDNKRILPCAAYC 252
Query: 222 MGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPEL 281
G G+ D+ F V+LG G +EV+ + L EK L++ +
Sbjct: 253 DGEYGLDDL--------------FIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAGHV 297
Query: 282 KASIEK 287
++++
Sbjct: 298 HSNLDD 303
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 145 bits (368), Expect = 9e-42
Identities = 83/309 (26%), Positives = 136/309 (44%), Gaps = 55/309 (17%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIP 56
L L L D+ G A D+ +V G YA SD+VII
Sbjct: 24 LARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA-------DTANSDIVIIT 76
Query: 57 AGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAG 116
AG+PRKPGMTR+DL NAGIVK + I + + ++ ++SNP++ I V
Sbjct: 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD----IMTHVAWVRS 132
Query: 117 TYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----P 171
++++ G+ LD R ++F A ++ V + ++N V+GGH G ++P+ T P
Sbjct: 133 GLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYTTVAGIP 191
Query: 172 KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA------------ 219
S+ L E I L +RT++GG E+VE +GSA + A + ++
Sbjct: 192 ISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESIVLDRKRVLPCA 250
Query: 220 -CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
L G G+ F V+LG+NG +++ + L + L+
Sbjct: 251 VGLEGQYGIDKT--------------FVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSA 295
Query: 279 PELKASIEK 287
+ + +
Sbjct: 296 KIVDENCKM 304
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 144 bits (366), Expect = 2e-41
Identities = 81/305 (26%), Positives = 127/305 (41%), Gaps = 54/305 (17%)
Query: 12 LYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
L+DIA G A D++H S ++V G + GSDVVII A +P +P
Sbjct: 33 LFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYA----DISGSDVVIITASIPGRPKD 88
Query: 66 TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125
R +L NA I+ S+ + YCP+A V I+NP++ + F+K K+ G
Sbjct: 89 DRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVSHFQKVSGLPHNKVCG 144
Query: 126 V-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT---------PKSNN 175
+ LD R +TF A V ++V+ VIGGH G ++P S + K
Sbjct: 145 MAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPLSSFIKQGL 203
Query: 176 LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CLM 222
++ E+I + T+ EV + G+A + A A A+A
Sbjct: 204 ITQEQIDEIVCHTRIAWKEVADNL-KTGTAYFAPAAAAVKMAEAYLKDKKAVVPCSAFCS 262
Query: 223 GLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
GV I +P +GKNG +++L L L+ E++ L E+
Sbjct: 263 NHYGVKGI---------YMGVP-----TIIGKNGVEDILEL-DLTPLEQKLLGESINEVN 307
Query: 283 ASIEK 287
+
Sbjct: 308 TISKV 312
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 144 bits (366), Expect = 2e-41
Identities = 91/305 (29%), Positives = 137/305 (44%), Gaps = 54/305 (17%)
Query: 12 LYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
++DI G A D++H I SPA++ G E L+ SDVVII AGVPRKP M
Sbjct: 43 MFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYE----YLQNSDVVIITAGVPRKPNM 98
Query: 66 TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125
TR DL +NA IV S+ + YCP+A V I+NP++ FK+ K+ G
Sbjct: 99 TRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD----AMVYYFKEKSGIPANKVCG 154
Query: 126 V-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----P-----KSNN 175
+ LD R + + + V ++V+ V+GGH G ++PL S T +
Sbjct: 155 MSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGK 213
Query: 176 LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CLM 222
++ +I + K+T GG E+VE GSA + A + A A L
Sbjct: 214 ITHSQINEIIKKTAFGGGEIVELL-KTGSAFYAPAASAVAMAQAYLKDSKSVLVCSTYLT 272
Query: 223 GLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
G V ++ F V +GKNG ++V+ + LSD EK ++
Sbjct: 273 GQYNVNNL--------------FVGVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQ 317
Query: 283 ASIEK 287
++
Sbjct: 318 NLVQD 322
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 142 bits (360), Expect = 2e-40
Identities = 85/305 (27%), Positives = 132/305 (43%), Gaps = 54/305 (17%)
Query: 12 LYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
L+DIA G D++ A+ G A+EG+DVVI+ AGVPRKPGM
Sbjct: 36 LFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYA----AIEGADVVIVTAGVPRKPGM 91
Query: 66 TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125
+RDDL IN +++ + I Y P A V I+NP++ +K K+ G
Sbjct: 92 SRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLD----AMVWALQKFSGLPAHKVVG 147
Query: 126 V-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----P-----KSNN 175
+ LD R + F + + NV V +V V V+GGH G +++PL +T P K
Sbjct: 148 MAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGW 206
Query: 176 LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CLM 222
S +++ + +RT+DGG E+V GSA + A + A++ L
Sbjct: 207 TSQDKLDKIIQRTRDGGAEIVGLL-KTGSAFYAPAASAIQMAESYLKDKKRVLPVAAQLS 265
Query: 223 GLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
G GV D+ + +G NG + ++ + L EK + +
Sbjct: 266 GQYGVKDM--------------YVGVPTVIGANGVERIIEI-DLDKDEKAQFDKSVASVA 310
Query: 283 ASIEK 287
E
Sbjct: 311 GLCEA 315
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 140 bits (356), Expect = 5e-40
Identities = 73/302 (24%), Positives = 120/302 (39%), Gaps = 45/302 (14%)
Query: 6 LVSSLSLYDIANTPGV----AADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+ + DI + AAD +H + + G + GSDVV+I AG+P
Sbjct: 25 IADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---EDTAGSDVVVITAGIP 81
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
R+PG TR DL NA I++ + +++ + + SNPV+ + +AG
Sbjct: 82 RQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSR 137
Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--PKSNNLS 177
+++ G LD R + + + + PV V ++G H G +P+FS+ + S
Sbjct: 138 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFS 196
Query: 178 DEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD--------ACLMGLN 225
+E + L Q+ +V+E K G M A+ D L G
Sbjct: 197 GDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHM--VEAILHDTGEVLPASVKLEGEF 254
Query: 226 GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI 285
G D F V LG NG +E++ L DYE+ + +L
Sbjct: 255 GHEDT--------------AFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQY 299
Query: 286 EK 287
+K
Sbjct: 300 DK 301
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 141 bits (357), Expect = 5e-40
Identities = 89/293 (30%), Positives = 137/293 (46%), Gaps = 29/293 (9%)
Query: 12 LYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
L+DIA G A D+ +V G + LE SDVVI+ AGVPRKPGM
Sbjct: 34 LFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYK----DLENSDVVIVTAGVPRKPGM 89
Query: 66 TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125
+RDDL IN +++++ I + CP+A V I+NP++ I + +K + K+ G
Sbjct: 90 SRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLD----IMVNMLQKFSGVPDNKIVG 145
Query: 126 V-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT---------PKSNN 175
+ LD R +TF A ++NV V +V V+GGH G T++PL + K
Sbjct: 146 MAGVLDSARFRTFLADELNVSVQQVQAYVMGGH-GDTMVPLTKMSNVAGVSLEQLVKEGK 204
Query: 176 LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIVECT 234
L E + A+ RT+ GG E+V GSA + A AG A++ L + P +
Sbjct: 205 LKQERLDAIVSRTRSGGGEIVALL-KTGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVK 263
Query: 235 FVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
+ E F + NG + + +SD E++ L+ +K +
Sbjct: 264 AGMYGLDEDLFVGVPTEISANGV-RPIEV-EISDKEREQLQVSINAIKDLNKA 314
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 139 bits (354), Expect = 9e-40
Identities = 72/315 (22%), Positives = 124/315 (39%), Gaps = 63/315 (20%)
Query: 6 LVSSLSLYDIAN----TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPA 57
+ L L + G+ D+ S A + Y ++ + ++ SDVVII +
Sbjct: 25 FMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI--YVESDENLRIIDESDVVIITS 82
Query: 58 GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
GVPRK GM+R DL NA IV IA C + +I+NPV+ +
Sbjct: 83 GVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVD----VMTYKALVDSK 137
Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT------ 170
++ ++FG+ T LD +R K A V + EV +IG H G +++PL S +
Sbjct: 138 FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPI 196
Query: 171 PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYA-----GAVFADACL 221
K + I + + + G +++ K G +A L++ + +
Sbjct: 197 QKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAY 256
Query: 222 M-----GLN----GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQ 272
+ G+ GVP V++G++G +EV+ + L E
Sbjct: 257 VDGEFDGIRDVCIGVP---------------------VKIGRDGIEEVVSI-ELDKDEII 294
Query: 273 GLESLKPELKASIEK 287
+K E+
Sbjct: 295 AFRKSAEIIKKYCEE 309
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 138 bits (350), Expect = 7e-39
Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 58/310 (18%)
Query: 12 LYDIAN--TPGVAADVSHINSPAQVEG----YAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
LYD+ G A D+SH+ V E AL G+D VI+ AG+ + PG
Sbjct: 38 LYDVVKGMPEGKALDLSHV---TSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGK 94
Query: 66 -----TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
+R+DL N+ I++ + I YCP + +++NP++ +V +A
Sbjct: 95 PDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPT 150
Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----P---- 171
+ G+ LD R + + A ++V +V VIG H G ++PL T P
Sbjct: 151 NMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKF 209
Query: 172 -KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA----------- 219
K +++++++ + + T+ G E+V G+GSA + A + A +
Sbjct: 210 IKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEKRVIPC 268
Query: 220 --CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESL 277
G G+ D+ F +G G + V+ L L++ EK+ +
Sbjct: 269 SVYCNGEYGLKDM--------------FIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKS 313
Query: 278 KPELKASIEK 287
++ A +
Sbjct: 314 VDDVMALNKA 323
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 136 bits (346), Expect = 2e-38
Identities = 81/321 (25%), Positives = 129/321 (40%), Gaps = 80/321 (24%)
Query: 12 LYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIPAGVPRK 62
L+DI G A D SH S +V G Y L G+DVVI+ AG +
Sbjct: 33 LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYD-------DLAGADVVIVTAGFTKA 85
Query: 63 PGMT-----RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
PG + RDDL +N I+ + I CP+A + +++NPV+ + ++ +
Sbjct: 86 PGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSG 141
Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT------ 170
+ K+ G+ LD R K + + K+NV +VN ++G H G ++ L T
Sbjct: 142 VPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAH-GNKMVLLKRYITVGGIPL 200
Query: 171 ---PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYA-----GAVFAD 218
+ +SD E++A+ RT + E+V A +A + MA + V
Sbjct: 201 QEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLIC 260
Query: 219 ACLM----GLN----GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYE 270
+ L+ G + G P V LG NG ++V+ L L+ E
Sbjct: 261 STLLEGQYGHSDIFGGTP---------------------VVLGANGVEQVIEL-QLNSEE 298
Query: 271 KQGL----ESLKPELKASIEK 287
K K +KA
Sbjct: 299 KAKFDEAIAETK-RMKALAHH 318
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 134 bits (341), Expect = 1e-37
Identities = 60/314 (19%), Positives = 110/314 (35%), Gaps = 56/314 (17%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
+ L + D+ G D++H P + G + + +D+V I AG
Sbjct: 29 ITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKT--SYGTY---EDCKDADIVCICAGA 83
Query: 60 PRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
+KPG TR +L N I K + + + + + +NPV+ I K
Sbjct: 84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTYATWKFSGLP 139
Query: 120 EKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT-------- 170
++++ G TTLD R + + V +IG H G T LP++S A
Sbjct: 140 KERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-GDTELPVWSHANVGGVPVSE 198
Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD------ 218
K++ EE+ + ++ ++E K G + + A+ +
Sbjct: 199 LVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARI--TKAILHNENSILT 256
Query: 219 --ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLES 276
L G G D+ + + + G + L L++ EK+
Sbjct: 257 VSTYLDGQYGADDV--------------YIGVPAVVNRGGIAGITEL-NLNEKEKEQFLH 301
Query: 277 LKPELKASIEKGIQ 290
LK ++
Sbjct: 302 SAGVLKNILKPHFA 315
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 134 bits (340), Expect = 1e-37
Identities = 67/312 (21%), Positives = 117/312 (37%), Gaps = 56/312 (17%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
+ + L D G A D +H P + + G+ +D+V+I AG
Sbjct: 30 IADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI--WHGDY---DDCRDADLVVICAGA 84
Query: 60 PRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
+KPG TR DL + N I +S+ ++ L + +NPV+ I K
Sbjct: 85 NQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLP 140
Query: 120 EKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT-------- 170
+++ G T LD R + +V V+ +IG H G T LP++SQA
Sbjct: 141 HERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAYIGVMPIRK 199
Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD------ 218
+ ++++ + +D +++E K G + A+ +
Sbjct: 200 LVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARV--TRAILHNENAILT 257
Query: 219 --ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLES 276
A L GL G D+ + + +NG EV+ + L+D EK
Sbjct: 258 VSAYLDGLYGERDV--------------YIGVPAVINRNGIREVIEI-ELNDDEKNRFHH 302
Query: 277 LKPELKASIEKG 288
LK+ + +
Sbjct: 303 SAATLKSVLARA 314
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 134 bits (339), Expect = 2e-37
Identities = 68/311 (21%), Positives = 130/311 (41%), Gaps = 54/311 (17%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+ + D+ T G A D+ +P ++ Y+GE + +D+V+I AG P
Sbjct: 29 IAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI--YSGEY---SDCKDADLVVITAGAP 83
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
+KPG +R DL N N I+ S+ + + + + +NPV+ I K + +
Sbjct: 84 QKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPK 139
Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
+++ G T+LD R + + NV V+ ++G H G + +S AT
Sbjct: 140 ERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDV 198
Query: 171 PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD-------- 218
K +SD+++ L ++ +++ K G G+A + + + A+ D
Sbjct: 199 AKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRI--SKAILRDENAVLPVG 256
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
A + G G+ DI + + +G G +++ PLS E + ++
Sbjct: 257 AYMDGQYGLNDI--------------YIGTPAIIGGTGLKQIIES-PLSADELKKMQDSA 301
Query: 279 PELKASIEKGI 289
LK + G+
Sbjct: 302 ATLKKVLNDGL 312
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 133 bits (338), Expect = 3e-37
Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 60/322 (18%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+ L D+ G A D+ H A + YAG+ L+GSDVVI+ AGVP
Sbjct: 24 FAREMVLIDVDKKRAEGDALDLIHGTPFTRRANI--YAGDY---ADLKGSDVVIVAAGVP 78
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
+KPG TR L NA ++K + ++ Y P ++V +++NPV+ + F K D
Sbjct: 79 QKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDP 134
Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
+K+FG T LD R +T A V+V VIG H G + +P++S A
Sbjct: 135 RKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-GDSEVPVWSGAMIGGIPLQNM 193
Query: 171 -PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD------- 218
+ ++ ++T+ E++E K A + ++F D
Sbjct: 194 CQVCQKCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADI--VESIFFDEKRVLTL 251
Query: 219 -ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL--- 274
L GV D+ + V LGK+G + +L L L++ E +
Sbjct: 252 SVYLEDYLGVKDL--------------CISVPVTLGKHGVERILEL-NLNEEELEAFRKS 296
Query: 275 -ESLKPELKASIEKGIQFANRS 295
LK I +
Sbjct: 297 ASILK-NAINEITAEENKHQNT 317
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 131 bits (333), Expect = 1e-36
Identities = 69/316 (21%), Positives = 125/316 (39%), Gaps = 64/316 (20%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEG--YAGEEQLGKALEGSDVVIIPA 57
+V L + D+ G D+ H + +V+ Y+ +D+V+I A
Sbjct: 30 IVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYS-------DCHDADLVVICA 82
Query: 58 GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
G +KPG TR DL + N I KS+ + + + +NPV+ I A K
Sbjct: 83 GAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAYATWKFSG 138
Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT------ 170
++++ G T LD R + + +V V+ +IG H G T LP++S A
Sbjct: 139 LPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHANIAGQPL 197
Query: 171 ---PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD----- 218
+ +I+ + +T+D ++++AK G + A+F +
Sbjct: 198 KTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARI--TEAIFRNEDAVL 255
Query: 219 ---ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL- 274
A L G D+ + + +NG V+ + PL+D E+
Sbjct: 256 TVSALLEGEYEEEDV--------------YIGVPAVINRNGIRNVVEI-PLNDEEQSKFA 300
Query: 275 ---ESLKPELKASIEK 287
++LK ++ A E+
Sbjct: 301 HSAKTLK-DIMAEAEE 315
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 131 bits (333), Expect = 2e-36
Identities = 72/312 (23%), Positives = 135/312 (43%), Gaps = 55/312 (17%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+ + + DI T G A D+S+ SP ++ Y+ E + +D+V+I AG P
Sbjct: 33 IAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI--YSAEY---SDAKDADLVVITAGAP 87
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
+KPG TR DL N N I+KS+ I + + + + +NPV+ I K + +
Sbjct: 88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPK 143
Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
++ G T+LD R + A VNV V+ ++G H G T P++S A
Sbjct: 144 NRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEW 202
Query: 171 -PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD------- 218
+ ++++ + + +D E+++ K G +A + + A+ D
Sbjct: 203 VKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARI--SKAILNDENAVLPL 260
Query: 219 -ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESL 277
+ G G+ DI + + + +NG +L + PL+D+E++ ++
Sbjct: 261 SVYMDGQYGLNDI--------------YIGTPAVINRNGIQNILEI-PLTDHEEESMQKS 305
Query: 278 KPELKASIEKGI 289
+LK +
Sbjct: 306 ASQLKKVLTDAF 317
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 129 bits (327), Expect = 1e-35
Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 33/300 (11%)
Query: 9 SLSLYDIANTP----GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG 64
L L DI GV ++ P ++ ++ A + DV I+ +PR+ G
Sbjct: 36 ILVLLDITPMMGVLDGVLMELQDCALP-LLKDVIATDKEEIAFKDLDVAILVGSMPRRDG 94
Query: 65 MTRDDLFNINAGIVKSLCTAIANYCPHA-LVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
M R DL N I K A+ Y + V ++ NP N+ A+ K A + ++
Sbjct: 95 MERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENF 151
Query: 124 FGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----------PKS 173
+T LD RAK A K+ V +V +I G+ T P + A ++
Sbjct: 152 SCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEA 211
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP--DIV 231
Q G V++A+ SA A D G P + V
Sbjct: 212 VKDDSWLKGEFITTVQQRGAAVIKAR-KLSSA----MSAAKAICDHVRDIWFGTPEGEFV 266
Query: 232 ECTFVQSS-----VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
+ S V + ++ V + V GL P++D+ ++ ++ EL E
Sbjct: 267 SMG-IISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKE 324
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 128 bits (325), Expect = 2e-35
Identities = 61/300 (20%), Positives = 107/300 (35%), Gaps = 58/300 (19%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+ + L D+ A D+ H P V +AG LEG+ V++ AGV
Sbjct: 24 VAREVVLVDLDRKLAQAHAEDILHATPFAHPVWV--WAGSY---GDLEGARAVVLAAGVA 78
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
++PG TR L + NA + + + P A++ + +NPV+ + +V
Sbjct: 79 QRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVAYALSGLPP 134
Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
++ G T LD R + A + V V+ V+G H G + + ++S A
Sbjct: 135 GRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEH-GDSEVLVWSSAQVGGVPLLEF 193
Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA--------- 219
+ LS E+ + + + ++E GKG+ + A A
Sbjct: 194 AEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARLVRAILTDEKGVY 250
Query: 220 ----CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
+ GV ++ + LG G + LS E+ L
Sbjct: 251 TVSAFTPEVAGVLEV--------------SLSLPRILGAGGVAGTVYP-SLSPEERAALR 295
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 128 bits (325), Expect = 2e-35
Identities = 69/316 (21%), Positives = 123/316 (38%), Gaps = 64/316 (20%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEG---YAGEEQLGKALEGSDVVIIPA 57
+ + L DIA D+ H ++G +D+V+I A
Sbjct: 31 IAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-------ICRDADMVVITA 83
Query: 58 GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
G +KPG +R +L I+K++ + P+A+ +I+NPV+ IA V +K
Sbjct: 84 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTG 139
Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT------ 170
E ++FG T LD R + A + V V V+ + G H G + +PL+ AT
Sbjct: 140 LPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPM 198
Query: 171 ------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSAT----LSMAY-AGAVFAD- 218
P + L ++ + + + ++ +++ GKG+ +S AV D
Sbjct: 199 SDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---GKGATNYAIGMSGVDIIEAVLHDT 255
Query: 219 -------ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEK 271
+ L +G+ DI + L + G + + P+SD E
Sbjct: 256 NRILPVSSMLKDFHGISDI--------------CMSVPTLLNRQGVNNTINT-PVSDKEL 300
Query: 272 QGLESLKPELKASIEK 287
L+ LK + +
Sbjct: 301 AALKRSAETLKETAAQ 316
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 127 bits (323), Expect = 4e-35
Identities = 71/316 (22%), Positives = 127/316 (40%), Gaps = 63/316 (19%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
+ L L D+ G A D++H + YAG+ ++ DV+++ AG
Sbjct: 31 TANELVLIDVFKEKAIGEAMDINHGLPFMGQMSL--YAGDY---SDVKDCDVIVVTAGAN 85
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
RKPG TR DL N I K + I Y H ++ ++SNPV+ I + +K
Sbjct: 86 RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPV 141
Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
K+ G T LD +R + + K+ V V V+ +IG H G + LPL+S
Sbjct: 142 GKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEY 200
Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSAT----LSMAY-AGAVFAD----- 218
N ++E+ K + + + G +++ KG+ +S+ + +
Sbjct: 201 IDDPKCNFTEEDKKKIAEDVKTAGATIIK---NKGATYYGIAVSINTIVETLLKNQNTIR 257
Query: 219 ---ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL- 274
+ G+ G+ D+ + + G EVL L+ E++ L
Sbjct: 258 TVGTVINGMYGIEDV--------------AISLPSIVNSEGVQEVLQF-NLTPEEEEALR 302
Query: 275 ---ESLKPELKASIEK 287
E +K ++ ++
Sbjct: 303 FSAEQVK-KVLNEVKN 317
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 126 bits (318), Expect = 2e-34
Identities = 64/294 (21%), Positives = 102/294 (34%), Gaps = 27/294 (9%)
Query: 7 VSSLSLYDIANTP------GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
L L +I N GV ++ P + G A + +DV ++ P
Sbjct: 36 PVILQLLEIPNEKAQKALQGVMMEIDDCAFP-LLAGMTAHADPMTAFKDADVALLVGARP 94
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
R PGM R DL NA I AI + V ++ NP N+ IA K A +
Sbjct: 95 RGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAM---KSAPSLP 151
Query: 120 EKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSNN 175
K + LD RA + A K PV+ + + G+ T+ + A +
Sbjct: 152 AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDM 211
Query: 176 LSDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC 233
++D+ G +++A+ G SA S A A ++G G
Sbjct: 212 INDDAWNRDTFLPTVGKRGAAIIDAR-GVSSA-ASAANAAIDHIHDWVLGTAG--KWTTM 267
Query: 234 TFVQSS----VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKA 283
+ S + E F V V GL + + ++ + EL
Sbjct: 268 G-IPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVTLNELLE 319
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 126 bits (318), Expect = 3e-34
Identities = 63/300 (21%), Positives = 116/300 (38%), Gaps = 56/300 (18%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
L L+L D+ G D+ H + +P V + + S +VII AG
Sbjct: 43 LADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIV--SSKD---YSVTANSKLVIITAGA 97
Query: 60 PRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
++ G +R +L N I K + + Y P + ++SNPV+ I V K +
Sbjct: 98 RQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYVAWKISGFP 153
Query: 120 EKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT-------- 170
+ ++ G LD R + ++ V + V+G H G + +P++S
Sbjct: 154 KNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGVNVAGVSLKS 212
Query: 171 ---PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD----- 218
+ E+ K + K+ D EV++ K G + + A ++ +
Sbjct: 213 LNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADL--AESIMKNLRRVH 270
Query: 219 ---ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
+ GL G+ + V +P LG+NG +V+ + L+ E+ L+
Sbjct: 271 PISTMIKGLYGIKEDV--------FLSVP-----CILGQNGISDVVKV-TLTPDEEARLK 316
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 122 bits (308), Expect = 5e-33
Identities = 62/255 (24%), Positives = 98/255 (38%), Gaps = 24/255 (9%)
Query: 45 KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHAL-VNMISNPVNS 103
A + +D ++ PRK GM R DL +N I A+A + V ++ NP N+
Sbjct: 76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT 135
Query: 104 TVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTI 162
IA K A + + +T LD RAK A K V + + V G H T+
Sbjct: 136 NALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNH-SSTM 191
Query: 163 LPLFSQAT----PKSNNLSDEEIK-ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFA 217
P A P + E + G +++A+ G SA A A
Sbjct: 192 FPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA----ASAANAAI 246
Query: 218 DACLMGLNGVP--DIVECTFVQSS----VTELPFFASKVRLGKNGADEVLGLGPLSDYEK 271
+ G P D V V S + E ++ V K+GA V+ ++++ +
Sbjct: 247 EHIRDWALGTPEGDWVSMA-VPSQGEYGIPEGIVYSFPVT-AKDGAYRVVEGLEINEFAR 304
Query: 272 QGLESLKPELKASIE 286
+ +E EL +E
Sbjct: 305 KRMEITAQELLDEME 319
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 121 bits (306), Expect = 7e-33
Identities = 76/308 (24%), Positives = 129/308 (41%), Gaps = 59/308 (19%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIP 56
V ++L DIA G A D++H I+ ++ G Y+ L+GS+++++
Sbjct: 24 DVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS-------LLKGSEIIVVT 76
Query: 57 AGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAG 116
AG+ RKPGMTR DL + NAGI+K + I P + + +++NP++ + + K
Sbjct: 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKES 132
Query: 117 TYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNN 175
++FG+ LD R K + +IG H G ++ S A
Sbjct: 133 GKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIGEH-GDSMFVAKSLADFD--- 186
Query: 176 LSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD--------ACLMG 223
+ + +A+ + EV++ K G A M AV D L G
Sbjct: 187 -GEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRM--VKAVVEDTGEIIPTSMILQG 243
Query: 224 LNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKA 283
G+ ++ +LGKNGA EV + LSD E + L + L+
Sbjct: 244 EYGIENV--------------AVGVPAKLGKNGA-EVADI-KLSDEEIEKLRNSAKILRE 287
Query: 284 SIEKGIQF 291
+E+ + +
Sbjct: 288 RLEE-LGY 294
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 121 bits (306), Expect = 2e-32
Identities = 56/250 (22%), Positives = 91/250 (36%), Gaps = 17/250 (6%)
Query: 45 KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISNPVNS 103
+ E D ++ PR PGM R L +IN I A+ + V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 104 TVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTIL 163
I K A K +T LD RAK A K V +V+ I G+ T +
Sbjct: 164 NALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 220
Query: 164 PLFSQAT----PKSNNLSDEEI--KALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFA 217
P F A P + + + T Q G +++ G+ SA S A + A
Sbjct: 221 PDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRSSA-ASTAVSIADAI 278
Query: 218 DACLMGLNGVPDIVEC-TFVQSSVTELP---FFASKVRLGKNGADEVLGLGPLSDYEKQG 273
+ + D + + + F+ R +G E+ D+ +
Sbjct: 279 KSLVTPTPE-GDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWER 337
Query: 274 LESLKPELKA 283
++ + EL A
Sbjct: 338 IKKSEAELLA 347
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 117 bits (296), Expect = 2e-31
Identities = 65/289 (22%), Positives = 111/289 (38%), Gaps = 42/289 (14%)
Query: 6 LVSSLSLYDIANTP--GVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
S L L D A D++H ++ +V + G L + VVI+ AG
Sbjct: 24 SCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRV--WHGGH---SELADAQVVILTAGAN 78
Query: 61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
+KPG +R DL NA I + L I P A++ + SNPV+ + ++ +
Sbjct: 79 QKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD----LLTDLATQL--APG 132
Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
+ + G T LD R + A V + V+G H G + + +S A
Sbjct: 133 QPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH-GDSEVLAWSSAMVAGMPVADF 191
Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV- 227
++ +++ + + T++ ++E GK + + A A +A L V
Sbjct: 192 MQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRATYYGIGAALARITEAVLRDRRAVL 248
Query: 228 PDIVECTFVQSSVTELPFFASK-VRLGKNGADEVLGLGPLSDYEKQGLE 275
V + E S +G+ G L L+ E+Q LE
Sbjct: 249 T-------VSAPTPEYGVSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLE 289
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 116 bits (292), Expect = 1e-30
Identities = 46/229 (20%), Positives = 77/229 (33%), Gaps = 25/229 (10%)
Query: 6 LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEG--YAGEEQLGKALEGSDVVIIPA 57
L ++L D+ G D+ H +++ V G Y+ GS +V+I A
Sbjct: 45 LADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS-------VSAGSKLVVITA 97
Query: 58 GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
G ++ G +R +L N I K + I + P L + + K
Sbjct: 98 GARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT----DKNKQDWKLSG 153
Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PK 172
++ G LD R + ++ V V VIG H G ++ ++S K
Sbjct: 154 LPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQH-GDSVPSVWSGMWDAKLHK 212
Query: 173 SNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 221
S E+ L T VV + + A A +
Sbjct: 213 DVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIM 261
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 113 bits (286), Expect = 6e-30
Identities = 54/303 (17%), Positives = 94/303 (31%), Gaps = 60/303 (19%)
Query: 6 LVSSLSLYDIA-NTPGVAADVSHINSPAQVEG--YAGEEQLGKALEGSDVVIIPAGVPRK 62
+ L L D++ T G D+ N P + A S VVI
Sbjct: 38 IADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDLS-------ASAHSKVVIFTVN-SLG 89
Query: 63 PGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKK 122
+ D+ N + ++L A+ +Y H+++ + S P V I V K T+ +
Sbjct: 90 SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP----VEIMTYVTWKLSTFPANR 145
Query: 123 LFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEI 181
+ G+ LD R + + + V VIG G + +S
Sbjct: 146 VIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GEDKVLTWSGQEE-------VVS 197
Query: 182 KALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD--------ACLMGLNGVPD 229
+ + E++ K G + M ++ + A G +
Sbjct: 198 HTSQVQLSNRAMELLRVKGQRSWSVGLSVADM--VDSIVNNKKKVHSVSALAKGYYDINS 255
Query: 230 IVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE--K 287
V F + LG NG EV+ L + L++S
Sbjct: 256 EV-------------FLSLPCILGTNGVSEVIKT-TLKEDTVTEK------LQSSASSIH 295
Query: 288 GIQ 290
+Q
Sbjct: 296 SLQ 298
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 109 bits (276), Expect = 2e-28
Identities = 50/301 (16%), Positives = 105/301 (34%), Gaps = 40/301 (13%)
Query: 6 LVSSLSLYDIANTP--GVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
+ D D + + + + AL +DVVI G
Sbjct: 25 VADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI--VINDW---AALADADVVISTLGN 79
Query: 60 PR----KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
+ P R + +V+S+ T + H ++ +ISNPV+ + +F+
Sbjct: 80 IKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHV 135
Query: 116 GTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN 174
+ K+ G T LD R + ++ V+ +G H G + +S
Sbjct: 136 TGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQ 194
Query: 175 NLSD------EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV- 227
+ ++ A+ + + GG V+ GKG + +A + A A + +
Sbjct: 195 PIVTLADAGDIDLAAIEEEARKGGFTVLN---GKGYTSYGVATSAIRIAKAVMADAHAEL 251
Query: 228 PDIVECTFVQSSVTELPFFASK-VRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
V + ++ + S +G++G L L+ E++ L + ++ +
Sbjct: 252 V-------VSNRRDDMGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFD 303
Query: 287 K 287
+
Sbjct: 304 E 304
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 2e-09
Identities = 40/258 (15%), Positives = 77/258 (29%), Gaps = 84/258 (32%)
Query: 104 TVPIAAEVFKKAGTYDEKKLFGVTTLDVVR----AKTFYAG-------KVNVPVAEVNVP 152
T A +V+ +A + + G + LD+V T + G + N
Sbjct: 1638 TSKAAQDVWNRADNHFKDTY-GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 153 VIGGHAGVTILPLFSQATPKSNNL---SDEEIKALTKRTQ----------------DGGT 193
V G + +F + S + S++ + + T+ TQ G
Sbjct: 1697 VDG---KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 194 EVVEAKAGK--G--SATLSMAYAGAV-FADAC-------------------------LMG 223
AG G +A L+ + A + ++
Sbjct: 1754 PADATFAGHSLGEYAA-LA-SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 224 LNGVPDIVECTFVQSSVTELPFFASKVRLGK-------NGADE--VLGLGPLSDYEKQGL 274
+N P V +F Q ++ + K R G N ++ V G + + L
Sbjct: 1812 IN--PGRVAASFSQEALQYVVERVGK-RTGWLVEIVNYNVENQQYVAA-G-----DLRAL 1862
Query: 275 ESLKPELKASIEKGIQFA 292
+++ L + I
Sbjct: 1863 DTVTNVLNFIKLQKIDII 1880
Score = 42.3 bits (99), Expect = 1e-04
Identities = 45/246 (18%), Positives = 71/246 (28%), Gaps = 81/246 (32%)
Query: 1 MKLDPLVSSLSLYDIANTPGVAADV----------------SHI--NSPAQVEGYAGEEQ 42
M +D LY T A DV I N+P + + G E+
Sbjct: 1631 MGMD-------LYK---TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 43 LGKALEGSDVVIIPAGVPRK--PGMTRD---DLFNINAGIVKSLCTAIANYC---PHALV 94
GK + R+ M + D I K + +Y L+
Sbjct: 1681 -GKRI-------------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 95 NMISN--PVNSTVPIAA-EVFKKAGTYDEKKLF---------------GVTTL-DVVRAK 135
+ P + + AA E K G F V ++ +V
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV- 1785
Query: 136 TFYAGK---VNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGG 192
FY G V VP E+ + + I P + S E ++ + +R
Sbjct: 1786 VFYRGMTMQVAVPRDELG---RSNYGMIAINP--GRVAAS---FSQEALQYVVERVGKRT 1837
Query: 193 TEVVEA 198
+VE
Sbjct: 1838 GWLVEI 1843
Score = 39.3 bits (91), Expect = 0.001
Identities = 60/366 (16%), Positives = 106/366 (28%), Gaps = 133/366 (36%)
Query: 3 LDPLVSSL----SLY----DI-------ANTPGV----AADVS----------HINSPAQ 33
L L+ + ++ +I +NTP + +S H A+
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 34 VEGYAGEEQLGKALEGSDVV---IIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP 90
+ G+ E L L+G+ ++ A + + + F + L I C
Sbjct: 255 LLGFTPGE-LRSYLKGATGHSQGLVTAVAIAE-TDSWESFFVSVRKAITVL-FFIGVRCY 311
Query: 91 HALVNMISNPVNSTVPIAAEVFKKAGTYDEKK---LFGVT--TLDVVRAKTFYAGKVN-- 143
A P S + + + + +E + ++ T + V+ Y K N
Sbjct: 312 EAY------PNTS---LPPSILEDSLENNEGVPSPMLSISNLTQEQVQD---YVNKTNSH 359
Query: 144 ------VPVAEVNVP---VIGGHA----GVTIL---------------PLFSQATPK--- 172
V ++ VN V+ G G+ + P FS+ K
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-FSERKLKFSN 418
Query: 173 ----------SNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF-----A 217
S+ L A +D V A + + V+ +
Sbjct: 419 RFLPVASPFHSHLLVP----ASDLINKDLVKNNVSFNA----KDIQIP----VYDTFDGS 466
Query: 218 DACLMGLNGVPDIVECTF---------VQSSVTE-LPFFASKVRLGKNGADEVLGLGPLS 267
D ++ + IV+C Q T L F G GLG L+
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF----------GPGGASGLGVLT 516
Query: 268 DYEKQG 273
K G
Sbjct: 517 HRNKDG 522
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 40.9 bits (95), Expect = 4e-04
Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 28/182 (15%)
Query: 1 MKLDPLVSSLSLYDI-ANTPGVAADV--SHINSPAQVEGYAGEEQLGKALEGSDVVIIPA 57
+ + +++LYD+ + N + E + + KAL +D+VII
Sbjct: 27 SIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLK---KALSAADIVIISI 83
Query: 58 GV------------PRKPGMTRDDLFNINAG----------IVKSLCTAIANYCPHALVN 95
P + G+ + + G I + AI +Y P + V
Sbjct: 84 LPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVI 143
Query: 96 MISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIG 155
+NP++ + +VF T + T G ++ V V+G
Sbjct: 144 NYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRREDIRVNVLG 203
Query: 156 GH 157
+
Sbjct: 204 IN 205
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.8 bits (89), Expect = 5e-04
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 14/36 (38%)
Query: 2 KLDPLVSSLSLY--DIANTPGVAADVSHINSPAQVE 35
KL +SL LY D A P +A I A +E
Sbjct: 24 KLQ---ASLKLYADDSA--PALA-----IK--ATME 47
Score = 36.5 bits (83), Expect = 0.004
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 13/30 (43%)
Query: 270 EKQGLE----SLK-------PEL--KASIE 286
EKQ L+ SLK P L KA++E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 1.1
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 9/31 (29%)
Query: 78 VKSLCTAIANYCPHALVNMISNP---VNSTV 105
+K L ++ Y S P + +T+
Sbjct: 22 LKKLQASLKLYADD------SAPALAIKATM 46
Score = 28.0 bits (61), Expect = 2.4
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 9/38 (23%)
Query: 40 EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77
E+Q K L+ S + P I A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPA---------LAIKATM 46
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 37.8 bits (87), Expect = 0.003
Identities = 30/213 (14%), Positives = 60/213 (28%), Gaps = 36/213 (16%)
Query: 7 VSSLSLYDIANTP---GVAADVSHINSPAQVEGYAGE--EQLGKALEGSDVVIIPAGV-- 59
V L L DI + ++ +AL+G+D V V
Sbjct: 36 VGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGG 95
Query: 60 ----------PRKPGMTRDDLFNI--------NAGIVKSLCTAIANYCPHALVNMISNPV 101
P K G+ + ++ + + CP A + +NP
Sbjct: 96 LEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPA 155
Query: 102 NSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVT 161
K ++K+ G+ + + + A + V V AG+
Sbjct: 156 GMVTEAVLRYTK------QEKVVGLCNV-PIGMRMGVAKLLGVDADR----VHIDFAGLN 204
Query: 162 ILPLFSQATPKSNNLSDEEIKALTKRTQDGGTE 194
+ ++++ I + + G T
Sbjct: 205 HMVFGLHVYLDGVEVTEKVIDLVAHPDRSGVTM 237
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 37.4 bits (86), Expect = 0.004
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 25/119 (21%)
Query: 7 VSSLSLYDI----ANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRK 62
+ L LYD + A DV I A +A +A D V+ V +
Sbjct: 57 IRKLKLYDNDKERQDRIAGACDV-FIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKY 115
Query: 63 PGMTRDDLFNINAGI--------------------VKSLCTAIANYCPHALVNMISNPV 101
D+ + G+ V + + Y P A + SNP
Sbjct: 116 AMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPA 174
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 34.5 bits (78), Expect = 0.040
Identities = 24/185 (12%), Positives = 43/185 (23%), Gaps = 39/185 (21%)
Query: 1 MKLDPL-VSSLSLYDIA--NTPGVAADVSHINSPAQVEG-YAGEEQLGKALEGSDVVIIP 56
K L S+++L DI + + + L + +D VI
Sbjct: 25 CKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVINT 84
Query: 57 AGVPRKPGMTRDDLFNINAGI--------------------------VKSLCTAIANYCP 90
A V + + G + I P
Sbjct: 85 AMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSP 144
Query: 91 HALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVN 150
A +NP+ + + K G K+ + +V+
Sbjct: 145 KAWYLQAANPIFEG----TTLVTRTVPI---KAVGFC--HGHYGVMEIVEKLGLEEEKVD 195
Query: 151 VPVIG 155
V G
Sbjct: 196 WQVAG 200
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 0.36
Identities = 28/214 (13%), Positives = 50/214 (23%), Gaps = 28/214 (13%)
Query: 20 GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVK 79
A D + PA G+ L A E V + R + A I
Sbjct: 1209 ATATDKIGRSVPA-----PGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTR-EAQIKD 1262
Query: 80 SLCTAIANYCPHALVNM--ISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTF 137
+ + + + P E + ++E + F
Sbjct: 1263 WVENEL------EALKLEAEEIPSEDQNEFLLE--RTREIHNEAESQLRAAQQQW-GNDF 1313
Query: 138 YAGKVNVPVAEVNVPVIGGHAG-VTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVV 196
Y + + G + + +T ++ I +
Sbjct: 1314 YKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMM-----KHLGRS 1368
Query: 197 EAKAGKGSATLSM-----AYAGAVFADACLMGLN 225
E G + AGA + L LN
Sbjct: 1369 EGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILN 1402
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB
component, phosphotransferase, sugar transport, STRU
genomics; HET: PGE; 1.65A {Streptococcus pyogenes
serotype M1}
Length = 163
Score = 30.1 bits (68), Expect = 0.48
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 12/92 (13%)
Query: 104 TVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTIL 163
++ ++ KA + +F + D+ AK G V + E+N+ I +
Sbjct: 64 SIQKVIDIIHKA--SPAQSIF-IVVKDLQDAKLLVEGGVPIT--EINIGNIHKTDDKVAI 118
Query: 164 PLFSQATPKSNNLSDEEIKALTKRTQDGGTEV 195
+ +L + + A+ D
Sbjct: 119 T-------QFISLGETDKSAIRCLAHDHHVVF 143
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 30.3 bits (69), Expect = 0.85
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 43 LGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVN 102
A +D VII P + FN + V+++ + P+A++ +
Sbjct: 103 KHDAYRNADYVIIATPTDYDPK---TNYFNTST--VEAVIRDVTEINPNAVM------II 151
Query: 103 -STVPI--AAEVFKKAGTYD 119
ST+P+ ++ ++ G +
Sbjct: 152 KSTIPVGFTRDIKERLGIDN 171
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 30.2 bits (69), Expect = 0.88
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 43 LGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVN 102
A + +++VII + F+ V+++ + + HA +I +
Sbjct: 67 SKAAYKEAELVIIATPTNYNSR---INYFDTQH--VETVIKEVLSVNSHAT--LI---IK 116
Query: 103 STVPI--AAEVFKKAGTYD 119
ST+PI E+ +K T
Sbjct: 117 STIPIGFITEMRQKFQTDR 135
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N-
acetylgalactosamine-specific component...; manxb PTS;
1.56A {Thermoanaerobacter tengcongensis}
Length = 187
Score = 29.4 bits (66), Expect = 1.1
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 104 TVPIAAEVFKKAGTYDEKKLF--GVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVT 161
V A + + + T E+K+F R +P+ +N+ +
Sbjct: 82 GVDAALKEWSQ-KTSVEEKVFLLFKNIDTCKRVM-----DGGLPITTLNIGGVAKTPQRK 135
Query: 162 ILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEV 195
+ +S +LS++E+K L + +V
Sbjct: 136 GIS-------QSVSLSEDEVKTLLELKTKYNVDV 162
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to
L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP:
b.43.2.1 c.85.1.1
Length = 591
Score = 28.6 bits (63), Expect = 2.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 7 VSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEG 49
V+ L + + T V ADV SP +E G + G A G
Sbjct: 344 VAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKLDGLAEHG 386
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 28.1 bits (63), Expect = 3.1
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 40 EEQLGKALEGSDVVIIPAGVPRKPGMTR 67
EE A D V+ AG G +
Sbjct: 75 EEDFSHAFASIDAVVFAAGSGPHTGADK 102
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate
metabolism, cytoplasm, fucose metabolism, manganese,
metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A
3a9t_A*
Length = 595
Score = 28.3 bits (62), Expect = 4.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 7 VSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEG 49
+S L Y + NT + ADV SP V+ G G+A G
Sbjct: 349 ISMLFGYLLTNTAQIFADVRTYWSPEAVKRVTGYTLEGRAANG 391
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 27.4 bits (61), Expect = 5.0
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 18/123 (14%)
Query: 3 LDPLVSSLSLYDIANTPGVAADVSHINSPAQ--------VEGYAGEEQLGKALEGSDVVI 54
DP S+ + P D A + +E L +G D+++
Sbjct: 36 GDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPEDEDLEALADGCDLLV 95
Query: 55 IPAGVPRKPGMTRDDLFNINAGI-VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFK 113
IP + D ++A + + N L+ +I + A ++
Sbjct: 96 IP---------STPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLT 146
Query: 114 KAG 116
AG
Sbjct: 147 TAG 149
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 27.7 bits (62), Expect = 5.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 34 VEGYAGEEQLGKALEGSDVVI 54
VE Y G E+L L + V+I
Sbjct: 178 VESYVGREELRAFLNQTRVLI 198
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base;
2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Length = 342
Score = 27.3 bits (61), Expect = 5.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 262 GLGPLSDYEK--QGLESLKPELKASIEKGIQFA 292
GL + EK GLE L K+S K FA
Sbjct: 109 GLIDYKEKEKISVGLEDLDLRCKSSAFKDATFA 141
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR
{Entamoeba histolytica} SCOP: a.64.1.4
Length = 77
Score = 25.4 bits (55), Expect = 6.5
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 68 DDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTV 105
L N +G + +LCT + ++ L+ +I + V++
Sbjct: 32 SSLCNKASGFIATLCTKVLDFGIDKLIQLIEDKVDANA 69
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural
genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Length = 296
Score = 26.9 bits (60), Expect = 7.4
Identities = 3/33 (9%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 262 GLGPLSDYEK--QGLESLKPELKASIEKGIQFA 292
GL ++ + + L + ++ +
Sbjct: 109 GLQDEANGVQLMKPFPELGKLCEEAVGYHVFGT 141
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 27.1 bits (60), Expect = 8.1
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 24 DVSHINSPAQVEGYAGE--EQLGKALEGSDVVIIPAGV 59
D++ NS VEG + + GS V ++ G
Sbjct: 130 DIAIYNSIPTVEGTIMLAIQHTDYTIHGSQVAVLGLGR 167
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc,
dipeptide L-Leu-D-Ala, PSI-2, P structure initiative;
HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Length = 318
Score = 26.8 bits (60), Expect = 8.2
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 146 VAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKR 187
E VI H+ + NL DE+IKA+ +
Sbjct: 183 TLEQAEFVIASHSNAKAI------CSHPRNLDDEQIKAMIEH 218
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB:
2rog_A
Length = 66
Score = 24.9 bits (55), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 15 IANTPGVA-ADVSHINSPAQVEGYAGEEQLGKALE 48
+ PGV +VS A VEG A + L +A+E
Sbjct: 22 LKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVE 56
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 26.9 bits (60), Expect = 8.5
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 30 SPAQVEG---YAGEEQLGKALEGSDVVI 54
S + G L K L +DV++
Sbjct: 172 SGRERAGFDQVYQLPALNKMLAQADVIV 199
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha
helices merohedral/ hemihedral twinning, plant protein;
1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A
1cau_A 1cav_A 1caw_A 1cax_A
Length = 178
Score = 26.5 bits (58), Expect = 8.7
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 9/65 (13%)
Query: 5 PLVSSLSLYDIANTPGVAADVSHINSP-----AQVEGYAG----EEQLGKALEGSDVVII 55
+ + + + P H +S + + + + L+ D + I
Sbjct: 36 ENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKI 95
Query: 56 PAGVP 60
AG P
Sbjct: 96 QAGTP 100
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 26.8 bits (59), Expect = 9.0
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 37 YAGEEQLGKALEGSDVVIIPAGVP 60
E+L + ++ DVVI P
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFP 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.372
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,445,593
Number of extensions: 281128
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 78
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.9 bits)