Query 022547
Match_columns 295
No_of_seqs 246 out of 1619
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 8.2E-51 1.8E-55 373.3 23.4 199 96-295 3-203 (300)
2 PLN03013 cysteine synthase 100.0 1.5E-49 3.2E-54 382.9 27.6 206 90-295 109-314 (429)
3 PLN02556 cysteine synthase/L-3 100.0 9.7E-50 2.1E-54 380.4 26.1 222 70-295 29-250 (368)
4 PLN02565 cysteine synthase 100.0 2E-48 4.4E-53 365.6 26.1 201 95-295 6-206 (322)
5 PRK11761 cysM cysteine synthas 100.0 6.6E-48 1.4E-52 358.4 24.6 200 94-295 2-201 (296)
6 KOG1252 Cystathionine beta-syn 100.0 2.4E-48 5.1E-53 356.6 15.6 208 88-295 36-246 (362)
7 PLN00011 cysteine synthase 100.0 5.8E-47 1.3E-51 356.0 25.3 202 94-295 7-208 (323)
8 TIGR01138 cysM cysteine syntha 100.0 5.9E-47 1.3E-51 351.0 24.6 196 98-295 2-197 (290)
9 TIGR01136 cysKM cysteine synth 100.0 2.3E-46 4.9E-51 348.3 25.5 196 99-295 2-197 (299)
10 PRK10717 cysteine synthase A; 100.0 9.3E-46 2E-50 348.6 25.7 201 94-295 3-210 (330)
11 TIGR01139 cysK cysteine syntha 100.0 1.1E-45 2.4E-50 343.4 25.0 195 99-295 2-197 (298)
12 COG1171 IlvA Threonine dehydra 100.0 5.4E-46 1.2E-50 347.1 19.3 194 94-294 15-208 (347)
13 PRK07476 eutB threonine dehydr 100.0 1.3E-45 2.9E-50 346.6 21.3 194 93-295 8-201 (322)
14 PLN02970 serine racemase 100.0 2.6E-45 5.6E-50 345.5 22.7 193 94-295 17-209 (328)
15 PLN02356 phosphateglycerate ki 100.0 6.4E-45 1.4E-49 350.5 24.7 199 96-295 45-284 (423)
16 PRK08198 threonine dehydratase 100.0 5.9E-45 1.3E-49 351.8 22.5 193 94-295 12-204 (404)
17 cd01561 CBS_like CBS_like: Thi 100.0 2.5E-44 5.5E-49 333.1 25.8 192 103-295 1-194 (291)
18 TIGR01137 cysta_beta cystathio 100.0 1.2E-44 2.6E-49 353.9 23.9 199 96-295 3-204 (454)
19 PRK08526 threonine dehydratase 100.0 7.4E-45 1.6E-49 350.7 21.5 193 94-295 10-202 (403)
20 TIGR02991 ectoine_eutB ectoine 100.0 2.1E-44 4.5E-49 337.9 22.8 193 94-295 9-201 (317)
21 PRK06382 threonine dehydratase 100.0 1.6E-44 3.5E-49 349.0 22.6 193 94-295 15-207 (406)
22 PRK08638 threonine dehydratase 100.0 1.2E-44 2.7E-49 341.4 21.2 193 94-295 17-209 (333)
23 PRK06110 hypothetical protein; 100.0 1.7E-44 3.7E-49 339.1 21.8 193 94-295 11-203 (322)
24 cd06447 D-Ser-dehyd D-Serine d 100.0 2.5E-44 5.4E-49 345.9 23.2 191 102-295 50-279 (404)
25 PRK12483 threonine dehydratase 100.0 2.3E-44 5E-49 355.6 22.9 191 97-295 30-220 (521)
26 PRK07048 serine/threonine dehy 100.0 3.3E-44 7.2E-49 336.9 21.7 193 94-295 14-206 (321)
27 PRK06608 threonine dehydratase 100.0 5.6E-44 1.2E-48 337.6 22.0 193 94-295 13-205 (338)
28 PLN02550 threonine dehydratase 100.0 2.2E-43 4.7E-48 351.2 25.8 191 97-295 102-292 (591)
29 cd01562 Thr-dehyd Threonine de 100.0 6.5E-44 1.4E-48 331.5 20.4 194 93-295 6-199 (304)
30 PRK06352 threonine synthase; V 100.0 7.7E-44 1.7E-48 338.3 20.4 191 95-295 19-215 (351)
31 TIGR01127 ilvA_1Cterm threonin 100.0 1.3E-43 2.7E-48 340.0 21.5 182 105-295 1-182 (380)
32 PRK06381 threonine synthase; V 100.0 2.7E-43 6E-48 330.2 23.2 188 99-295 10-206 (319)
33 PRK07334 threonine dehydratase 100.0 1.4E-43 3E-48 342.3 21.6 193 94-295 13-205 (403)
34 cd06448 L-Ser-dehyd Serine deh 100.0 1.7E-43 3.8E-48 331.5 21.6 188 104-295 1-191 (316)
35 PRK08639 threonine dehydratase 100.0 9.8E-44 2.1E-48 344.9 20.5 194 94-295 15-213 (420)
36 TIGR02079 THD1 threonine dehyd 100.0 1.6E-43 3.4E-48 342.3 21.8 194 94-295 6-202 (409)
37 TIGR01124 ilvA_2Cterm threonin 100.0 2.8E-43 6.2E-48 347.4 23.1 191 97-295 10-200 (499)
38 PRK02991 D-serine dehydratase; 100.0 2.8E-43 6E-48 342.3 22.5 194 99-295 70-302 (441)
39 TIGR02035 D_Ser_am_lyase D-ser 100.0 2.5E-43 5.5E-48 341.4 22.2 192 101-295 67-297 (431)
40 PRK06815 hypothetical protein; 100.0 2.4E-43 5.3E-48 330.6 21.1 194 93-295 9-202 (317)
41 KOG1250 Threonine/serine dehyd 100.0 2.1E-43 4.5E-48 328.9 19.5 197 91-295 53-249 (457)
42 cd01563 Thr-synth_1 Threonine 100.0 3.8E-43 8.1E-48 329.8 20.5 190 96-295 14-211 (324)
43 PRK09224 threonine dehydratase 100.0 6.6E-43 1.4E-47 345.7 22.9 191 97-295 13-203 (504)
44 PRK08246 threonine dehydratase 100.0 8.9E-43 1.9E-47 325.9 21.7 187 94-295 13-199 (310)
45 PRK07409 threonine synthase; V 100.0 8.6E-43 1.9E-47 331.3 21.8 191 95-295 22-219 (353)
46 PRK08197 threonine synthase; V 100.0 1.2E-42 2.5E-47 334.9 21.4 190 97-295 72-270 (394)
47 PRK08813 threonine dehydratase 100.0 5.1E-42 1.1E-46 324.5 23.5 184 93-295 28-211 (349)
48 cd00640 Trp-synth-beta_II Tryp 100.0 1.5E-41 3.3E-46 306.5 24.7 186 105-295 1-187 (244)
49 PRK07591 threonine synthase; V 100.0 3.7E-42 7.9E-47 333.9 22.2 191 97-295 82-281 (421)
50 PRK06721 threonine synthase; R 100.0 5.9E-42 1.3E-46 325.6 22.7 192 94-295 18-215 (352)
51 PRK12391 tryptophan synthase s 100.0 2.5E-41 5.4E-46 327.6 23.5 248 43-295 7-291 (427)
52 PRK05638 threonine synthase; V 100.0 1.8E-41 3.8E-46 331.1 22.5 187 97-295 59-251 (442)
53 PRK06260 threonine synthase; V 100.0 1.4E-41 3E-46 327.8 21.0 189 97-295 60-257 (397)
54 TIGR01415 trpB_rel pyridoxal-p 100.0 3.5E-41 7.5E-46 326.0 22.4 241 47-295 1-282 (419)
55 PRK06450 threonine synthase; V 100.0 1.3E-40 2.7E-45 314.6 22.3 178 97-295 51-235 (338)
56 PRK08206 diaminopropionate amm 100.0 1.5E-40 3.2E-45 320.6 22.3 197 95-295 33-263 (399)
57 PLN02569 threonine synthase 100.0 3E-40 6.5E-45 324.3 23.7 194 97-295 126-329 (484)
58 PRK08329 threonine synthase; V 100.0 3E-40 6.4E-45 313.3 22.5 182 97-295 57-244 (347)
59 KOG1481 Cysteine synthase [Ami 100.0 5.6E-41 1.2E-45 300.7 15.8 198 97-295 42-248 (391)
60 TIGR01747 diampropi_NH3ly diam 100.0 5.1E-39 1.1E-43 307.5 21.9 199 93-295 11-242 (376)
61 TIGR01275 ACC_deam_rel pyridox 100.0 7.3E-39 1.6E-43 299.2 21.0 188 101-295 4-203 (311)
62 TIGR00260 thrC threonine synth 100.0 2.3E-39 5E-44 304.6 17.6 189 96-295 15-214 (328)
63 TIGR03528 2_3_DAP_am_ly diamin 100.0 6.6E-39 1.4E-43 308.6 20.9 201 92-295 29-261 (396)
64 TIGR00263 trpB tryptophan synt 100.0 1.7E-38 3.6E-43 305.1 22.5 226 65-295 6-251 (385)
65 PRK03910 D-cysteine desulfhydr 100.0 1.7E-38 3.6E-43 299.5 21.1 197 93-295 4-217 (331)
66 PRK13028 tryptophan synthase s 100.0 4E-38 8.7E-43 302.8 22.9 226 65-295 18-263 (402)
67 PRK04346 tryptophan synthase s 100.0 4.2E-38 9E-43 302.2 22.5 226 65-295 14-259 (397)
68 cd06446 Trp-synth_B Tryptophan 100.0 1.1E-37 2.4E-42 297.6 22.7 201 90-295 18-235 (365)
69 PRK13802 bifunctional indole-3 100.0 1.4E-37 3.1E-42 314.5 23.7 226 65-295 282-533 (695)
70 PF00291 PALP: Pyridoxal-phosp 100.0 1.1E-37 2.4E-42 288.7 20.6 186 98-295 1-199 (306)
71 PRK14045 1-aminocyclopropane-1 100.0 7.9E-38 1.7E-42 294.8 19.7 198 92-295 9-218 (329)
72 PLN02618 tryptophan synthase, 100.0 3E-37 6.6E-42 297.0 22.8 228 63-295 20-272 (410)
73 PRK12390 1-aminocyclopropane-1 100.0 3E-37 6.5E-42 291.6 20.6 197 93-295 4-223 (337)
74 KOG1251 Serine racemase [Signa 100.0 7.8E-38 1.7E-42 276.1 15.4 193 94-295 15-207 (323)
75 cd06449 ACCD Aminocyclopropane 100.0 3.1E-37 6.7E-42 287.9 19.6 185 105-295 1-208 (307)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 6.9E-37 1.5E-41 289.2 21.6 197 93-295 3-222 (337)
77 PRK13803 bifunctional phosphor 100.0 4.6E-36 9.9E-41 302.7 21.7 226 65-295 227-471 (610)
78 TIGR03844 cysteate_syn cysteat 100.0 8.4E-35 1.8E-39 280.2 19.8 177 99-284 57-241 (398)
79 COG0498 ThrC Threonine synthas 100.0 1.5E-29 3.3E-34 242.8 19.1 182 97-287 69-255 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 2.6E-27 5.7E-32 216.2 17.0 186 103-295 55-256 (396)
81 COG2515 Acd 1-aminocyclopropan 99.9 8.6E-27 1.9E-31 212.2 16.4 198 92-295 3-214 (323)
82 COG1350 Predicted alternative 99.9 4.2E-27 9E-32 215.4 14.0 246 44-294 8-291 (432)
83 KOG1395 Tryptophan synthase be 99.9 8.7E-27 1.9E-31 214.9 13.3 258 31-294 38-323 (477)
84 PRK09225 threonine synthase; V 99.9 1.5E-21 3.3E-26 191.0 19.9 176 104-294 88-278 (462)
85 cd01560 Thr-synth_2 Threonine 99.9 1.3E-20 2.8E-25 184.5 22.1 174 105-293 88-279 (460)
86 COG3048 DsdA D-serine dehydrat 99.7 8.3E-16 1.8E-20 140.4 13.0 191 99-292 73-302 (443)
87 PF00107 ADH_zinc_N: Zinc-bind 93.5 0.46 1E-05 37.7 7.9 41 168-211 3-43 (130)
88 PF03808 Glyco_tran_WecB: Glyc 91.5 1.2 2.7E-05 38.0 8.4 101 168-274 13-114 (172)
89 COG0604 Qor NADPH:quinone redu 91.1 2.1 4.6E-05 40.4 10.3 59 149-210 137-195 (326)
90 cd08294 leukotriene_B4_DH_like 90.7 3.3 7.1E-05 38.0 11.0 59 148-209 137-195 (329)
91 PRK15408 autoinducer 2-binding 90.5 16 0.00034 34.5 16.3 146 141-295 71-242 (336)
92 cd08281 liver_ADH_like1 Zinc-d 90.2 9.3 0.0002 36.2 14.0 59 148-209 185-243 (371)
93 PRK10309 galactitol-1-phosphat 89.8 10 0.00022 35.4 13.7 59 147-208 153-211 (347)
94 cd08230 glucose_DH Glucose deh 89.1 2.5 5.5E-05 39.7 9.1 54 152-206 170-223 (355)
95 COG1063 Tdh Threonine dehydrog 89.1 11 0.00023 35.9 13.4 51 158-210 171-222 (350)
96 cd08287 FDH_like_ADH3 formalde 89.0 14 0.0003 34.2 14.0 58 149-209 163-220 (345)
97 PF05368 NmrA: NmrA-like famil 88.9 5.9 0.00013 34.8 10.9 51 158-209 1-51 (233)
98 TIGR02819 fdhA_non_GSH formald 88.8 4.8 0.0001 38.9 11.0 57 148-207 179-235 (393)
99 TIGR03201 dearomat_had 6-hydro 88.7 4.8 0.0001 37.8 10.7 58 147-208 159-216 (349)
100 PF00764 Arginosuc_synth: Argi 88.7 3 6.5E-05 40.6 9.3 126 159-293 1-138 (388)
101 cd06533 Glyco_transf_WecG_TagA 88.0 4.4 9.5E-05 34.6 9.1 98 168-273 11-111 (171)
102 cd08277 liver_alcohol_DH_like 87.9 14 0.0003 34.9 13.4 57 148-207 178-234 (365)
103 TIGR02818 adh_III_F_hyde S-(hy 87.9 22 0.00048 33.6 14.8 58 148-208 179-236 (368)
104 cd08285 NADP_ADH NADP(H)-depen 87.5 15 0.00033 34.2 13.3 58 148-208 160-217 (351)
105 TIGR02825 B4_12hDH leukotriene 87.4 6.7 0.00014 36.2 10.7 58 148-208 132-189 (325)
106 PLN02740 Alcohol dehydrogenase 87.3 20 0.00044 34.1 14.2 57 148-207 192-248 (381)
107 cd08295 double_bond_reductase_ 86.9 7.6 0.00016 36.1 10.8 56 149-207 146-202 (338)
108 TIGR03366 HpnZ_proposed putati 86.2 4.8 0.0001 36.6 8.8 54 152-208 118-171 (280)
109 TIGR00670 asp_carb_tr aspartat 85.6 3.5 7.7E-05 38.7 7.7 60 149-210 145-209 (301)
110 PLN03154 putative allyl alcoho 85.2 11 0.00024 35.5 11.1 58 148-208 152-210 (348)
111 TIGR03451 mycoS_dep_FDH mycoth 85.1 8.3 0.00018 36.3 10.2 57 148-207 170-226 (358)
112 cd08274 MDR9 Medium chain dehy 85.1 7.9 0.00017 35.8 9.9 57 147-207 170-226 (350)
113 PRK10669 putative cation:proto 85.0 11 0.00023 38.3 11.4 60 157-221 418-477 (558)
114 PRK03659 glutathione-regulated 84.9 12 0.00026 38.4 11.9 51 157-210 401-451 (601)
115 PRK12823 benD 1,6-dihydroxycyc 84.7 5.9 0.00013 35.1 8.5 54 156-209 9-62 (260)
116 PRK03562 glutathione-regulated 84.5 11 0.00024 38.9 11.4 52 157-211 401-452 (621)
117 cd08293 PTGR2 Prostaglandin re 84.5 12 0.00027 34.5 11.0 58 149-209 147-208 (345)
118 PRK13394 3-hydroxybutyrate deh 84.4 7 0.00015 34.5 8.9 56 156-211 8-64 (262)
119 cd08301 alcohol_DH_plants Plan 84.1 38 0.00082 31.9 14.2 58 148-208 181-238 (369)
120 cd08256 Zn_ADH2 Alcohol dehydr 83.9 13 0.00028 34.7 10.8 59 148-209 168-226 (350)
121 PRK08628 short chain dehydroge 83.8 8 0.00017 34.2 9.0 56 156-211 8-63 (258)
122 PRK06935 2-deoxy-D-gluconate 3 83.7 7.8 0.00017 34.4 8.9 55 156-210 16-70 (258)
123 COG2130 Putative NADP-dependen 83.5 10 0.00022 35.9 9.6 74 137-216 136-210 (340)
124 PRK12481 2-deoxy-D-gluconate 3 83.2 8 0.00017 34.4 8.8 54 156-210 9-62 (251)
125 PRK09424 pntA NAD(P) transhydr 83.1 28 0.0006 35.2 13.3 50 157-209 166-215 (509)
126 cd08297 CAD3 Cinnamyl alcohol 83.1 13 0.00028 34.4 10.4 54 151-207 162-215 (341)
127 PRK07109 short chain dehydroge 83.1 5.8 0.00013 37.3 8.1 66 156-221 9-75 (334)
128 cd01075 NAD_bind_Leu_Phe_Val_D 83.0 11 0.00024 33.0 9.3 68 136-206 6-76 (200)
129 cd08292 ETR_like_2 2-enoyl thi 82.9 12 0.00026 34.1 10.0 55 148-205 133-187 (324)
130 PRK08703 short chain dehydroge 82.9 16 0.00035 31.8 10.5 32 156-187 7-38 (239)
131 PRK08589 short chain dehydroge 82.8 6.7 0.00015 35.3 8.2 56 155-210 6-61 (272)
132 PF07279 DUF1442: Protein of u 82.7 10 0.00022 33.9 8.9 44 159-202 45-93 (218)
133 PRK06139 short chain dehydroge 82.7 5.2 0.00011 37.7 7.7 67 156-222 8-75 (330)
134 TIGR00696 wecB_tagA_cpsF bacte 82.7 11 0.00023 32.6 8.9 93 169-272 14-111 (177)
135 PRK12743 oxidoreductase; Provi 82.5 6.7 0.00015 34.8 8.0 55 156-210 3-59 (256)
136 TIGR01832 kduD 2-deoxy-D-gluco 82.5 10 0.00022 33.3 9.0 55 156-211 6-60 (248)
137 cd08233 butanediol_DH_like (2R 82.3 16 0.00034 34.1 10.7 58 148-208 166-223 (351)
138 KOG1201 Hydroxysteroid 17-beta 82.1 16 0.00035 34.2 10.4 73 155-228 38-112 (300)
139 PRK13656 trans-2-enoyl-CoA red 82.1 21 0.00045 34.9 11.5 56 128-186 15-73 (398)
140 cd08296 CAD_like Cinnamyl alco 82.0 14 0.0003 34.2 10.2 53 151-207 160-212 (333)
141 PRK08340 glucose-1-dehydrogena 81.9 26 0.00057 31.0 11.6 31 157-187 2-32 (259)
142 PRK08226 short chain dehydroge 81.8 8.5 0.00018 34.1 8.4 55 156-210 7-61 (263)
143 cd08231 MDR_TM0436_like Hypoth 81.8 45 0.00098 31.1 13.7 54 150-207 173-227 (361)
144 cd06324 PBP1_ABC_sugar_binding 81.5 42 0.00091 30.5 19.4 46 246-295 189-238 (305)
145 PF00106 adh_short: short chai 81.4 9.7 0.00021 31.1 8.1 65 157-221 2-70 (167)
146 TIGR02822 adh_fam_2 zinc-bindi 81.4 6.8 0.00015 36.6 7.9 56 148-207 159-214 (329)
147 PRK08993 2-deoxy-D-gluconate 3 81.2 15 0.00032 32.6 9.7 55 156-211 11-65 (253)
148 PRK05872 short chain dehydroge 81.0 15 0.00033 33.6 10.0 33 155-187 9-41 (296)
149 cd05188 MDR Medium chain reduc 80.7 37 0.00079 29.5 12.0 55 149-207 129-183 (271)
150 PRK06114 short chain dehydroge 80.7 15 0.00032 32.5 9.5 55 156-210 9-65 (254)
151 PRK09880 L-idonate 5-dehydroge 80.6 13 0.00029 34.6 9.6 58 148-208 163-220 (343)
152 PRK07523 gluconate 5-dehydroge 80.4 10 0.00022 33.5 8.3 55 156-210 11-66 (255)
153 cd05279 Zn_ADH1 Liver alcohol 79.9 43 0.00093 31.5 12.9 57 148-207 177-233 (365)
154 cd08289 MDR_yhfp_like Yhfp put 79.8 15 0.00034 33.4 9.6 50 155-207 147-196 (326)
155 PRK07097 gluconate 5-dehydroge 79.8 11 0.00023 33.7 8.4 56 156-211 11-67 (265)
156 PRK05993 short chain dehydroge 79.7 22 0.00047 32.1 10.4 52 156-210 5-56 (277)
157 COG0800 Eda 2-keto-3-deoxy-6-p 79.4 46 0.00099 29.7 11.9 122 139-273 27-163 (211)
158 PTZ00354 alcohol dehydrogenase 79.4 27 0.00059 31.7 11.1 56 150-208 136-191 (334)
159 cd08239 THR_DH_like L-threonin 79.2 45 0.00097 30.8 12.6 59 147-208 156-214 (339)
160 PF00185 OTCace: Aspartate/orn 79.1 7.2 0.00016 32.8 6.6 51 165-218 13-71 (158)
161 KOG0025 Zn2+-binding dehydroge 79.0 10 0.00022 35.7 7.9 86 120-210 124-217 (354)
162 PRK10754 quinone oxidoreductas 78.9 28 0.00062 31.8 11.1 57 148-207 134-190 (327)
163 PRK08277 D-mannonate oxidoredu 78.9 13 0.00027 33.4 8.6 55 156-210 11-66 (278)
164 PRK08063 enoyl-(acyl carrier p 78.8 16 0.00035 31.9 9.1 56 156-211 5-62 (250)
165 PRK07478 short chain dehydroge 78.8 13 0.00027 32.9 8.4 55 156-210 7-62 (254)
166 PRK06182 short chain dehydroge 78.8 27 0.00059 31.2 10.7 52 156-210 4-55 (273)
167 PRK05786 fabG 3-ketoacyl-(acyl 78.7 12 0.00026 32.5 8.2 33 156-188 6-38 (238)
168 PRK05557 fabG 3-ketoacyl-(acyl 78.7 16 0.00035 31.6 9.0 56 156-211 6-63 (248)
169 PRK06128 oxidoreductase; Provi 78.7 19 0.00042 32.9 9.9 56 156-211 56-114 (300)
170 PRK12937 short chain dehydroge 78.6 16 0.00035 31.8 9.0 56 156-211 6-63 (245)
171 PRK05876 short chain dehydroge 78.6 13 0.00028 33.7 8.6 55 156-210 7-62 (275)
172 PRK12939 short chain dehydroge 78.5 13 0.00029 32.3 8.4 66 156-221 8-74 (250)
173 PRK06172 short chain dehydroge 78.5 13 0.00028 32.7 8.4 55 156-210 8-63 (253)
174 cd08243 quinone_oxidoreductase 78.3 31 0.00066 31.0 11.0 55 150-207 138-192 (320)
175 cd08269 Zn_ADH9 Alcohol dehydr 78.2 29 0.00064 31.2 10.9 56 148-207 123-179 (312)
176 cd08300 alcohol_DH_class_III c 78.2 16 0.00034 34.5 9.4 57 148-207 180-236 (368)
177 PRK06194 hypothetical protein; 78.0 15 0.00033 33.0 8.8 56 156-211 7-63 (287)
178 PRK05396 tdh L-threonine 3-deh 77.9 12 0.00027 34.6 8.4 52 153-207 162-213 (341)
179 PRK12826 3-ketoacyl-(acyl-carr 77.6 16 0.00034 31.9 8.6 66 156-221 7-73 (251)
180 PRK07666 fabG 3-ketoacyl-(acyl 77.6 15 0.00033 32.0 8.5 56 156-211 8-64 (239)
181 PRK07792 fabG 3-ketoacyl-(acyl 77.6 15 0.00033 33.8 8.9 56 156-211 13-70 (306)
182 cd06274 PBP1_FruR Ligand bindi 77.5 49 0.0011 29.0 20.8 43 251-295 168-214 (264)
183 COG1064 AdhP Zn-dependent alco 77.4 12 0.00026 35.8 8.1 62 145-210 157-218 (339)
184 PF01210 NAD_Gly3P_dh_N: NAD-d 77.4 3.9 8.5E-05 34.2 4.4 39 159-200 2-40 (157)
185 PRK08643 acetoin reductase; Va 77.3 16 0.00036 32.1 8.7 56 156-211 3-59 (256)
186 KOG0023 Alcohol dehydrogenase, 77.3 13 0.00028 35.4 8.1 61 147-210 174-234 (360)
187 PRK07454 short chain dehydroge 77.3 15 0.00032 32.1 8.4 55 156-210 7-62 (241)
188 PRK05866 short chain dehydroge 77.3 12 0.00027 34.2 8.1 54 157-210 42-96 (293)
189 PF13561 adh_short_C2: Enoyl-( 77.1 14 0.00031 32.4 8.2 47 164-210 5-53 (241)
190 PF00070 Pyr_redox: Pyridine n 77.1 8.2 0.00018 28.1 5.6 49 159-207 2-59 (80)
191 TIGR01751 crot-CoA-red crotony 77.0 14 0.00031 35.3 8.8 56 150-208 185-240 (398)
192 PF01041 DegT_DnrJ_EryC1: DegT 76.9 5.4 0.00012 37.9 5.8 86 157-244 41-130 (363)
193 PRK07890 short chain dehydroge 76.9 15 0.00033 32.2 8.4 56 155-210 5-61 (258)
194 PRK08862 short chain dehydroge 76.9 14 0.0003 32.6 8.0 54 156-209 6-60 (227)
195 PRK06181 short chain dehydroge 76.8 14 0.00029 32.8 8.1 54 157-210 3-57 (263)
196 COG1751 Uncharacterized conser 76.5 19 0.00041 30.6 8.1 75 130-209 7-90 (186)
197 PRK07806 short chain dehydroge 76.5 22 0.00047 31.1 9.2 55 156-210 7-63 (248)
198 PRK12429 3-hydroxybutyrate deh 76.5 17 0.00037 31.8 8.6 55 156-210 5-60 (258)
199 cd08284 FDH_like_2 Glutathione 76.4 54 0.0012 30.2 12.3 54 150-206 163-216 (344)
200 PRK08217 fabG 3-ketoacyl-(acyl 76.4 15 0.00033 31.9 8.2 55 156-210 6-61 (253)
201 PRK05867 short chain dehydroge 76.2 15 0.00033 32.4 8.2 55 156-210 10-65 (253)
202 PRK12828 short chain dehydroge 76.2 27 0.00059 30.0 9.7 56 155-210 7-63 (239)
203 PLN02827 Alcohol dehydrogenase 76.2 73 0.0016 30.3 14.4 57 148-207 187-243 (378)
204 PRK07035 short chain dehydroge 76.2 17 0.00036 32.0 8.4 55 156-210 9-64 (252)
205 PRK12938 acetyacetyl-CoA reduc 76.1 16 0.00034 32.0 8.2 55 156-210 4-60 (246)
206 TIGR03206 benzo_BadH 2-hydroxy 76.0 15 0.00033 32.0 8.1 56 156-211 4-60 (250)
207 TIGR02824 quinone_pig3 putativ 76.0 36 0.00078 30.5 10.7 58 147-207 132-189 (325)
208 PRK08278 short chain dehydroge 75.9 22 0.00048 32.0 9.3 55 156-210 7-69 (273)
209 cd08288 MDR_yhdh Yhdh putative 75.6 18 0.00039 32.9 8.7 51 154-207 146-196 (324)
210 cd08242 MDR_like Medium chain 75.5 20 0.00043 32.8 9.0 57 147-207 148-204 (319)
211 PRK09134 short chain dehydroge 75.5 23 0.0005 31.3 9.2 55 156-210 10-66 (258)
212 PRK06124 gluconate 5-dehydroge 75.4 17 0.00036 32.1 8.2 56 155-210 11-67 (256)
213 PRK08303 short chain dehydroge 75.4 20 0.00043 33.3 9.0 55 156-210 9-74 (305)
214 TIGR01064 pyruv_kin pyruvate k 75.3 59 0.0013 32.5 12.7 118 170-294 261-402 (473)
215 PRK08085 gluconate 5-dehydroge 75.2 19 0.0004 31.8 8.5 55 156-210 10-65 (254)
216 cd08251 polyketide_synthase po 75.1 40 0.00087 29.8 10.7 54 148-204 114-167 (303)
217 COG1587 HemD Uroporphyrinogen- 75.0 32 0.00068 31.0 10.0 118 168-294 86-210 (248)
218 PRK12935 acetoacetyl-CoA reduc 75.0 18 0.00039 31.6 8.3 66 156-221 7-74 (247)
219 PRK05653 fabG 3-ketoacyl-(acyl 74.9 21 0.00045 30.8 8.6 55 156-210 6-61 (246)
220 PRK07814 short chain dehydroge 74.6 18 0.00038 32.3 8.3 66 156-221 11-77 (263)
221 PRK07677 short chain dehydroge 74.6 19 0.00041 31.7 8.4 55 156-210 2-57 (252)
222 TIGR00692 tdh L-threonine 3-de 74.3 21 0.00045 33.1 8.9 53 152-207 159-211 (340)
223 cd08291 ETR_like_1 2-enoyl thi 74.3 21 0.00046 32.8 8.9 51 157-210 145-196 (324)
224 cd08261 Zn_ADH7 Alcohol dehydr 74.0 34 0.00074 31.5 10.3 53 148-204 153-205 (337)
225 PRK08213 gluconate 5-dehydroge 74.0 19 0.00042 31.8 8.3 65 156-220 13-78 (259)
226 cd05288 PGDH Prostaglandin deh 74.0 44 0.00094 30.4 10.9 56 149-207 140-196 (329)
227 COG0078 ArgF Ornithine carbamo 74.0 16 0.00034 34.5 7.7 96 109-210 112-214 (310)
228 cd08244 MDR_enoyl_red Possible 73.9 43 0.00093 30.3 10.8 57 147-206 135-191 (324)
229 cd08253 zeta_crystallin Zeta-c 73.9 40 0.00088 30.1 10.5 55 150-207 140-194 (325)
230 PRK06949 short chain dehydroge 73.7 17 0.00037 31.9 7.9 34 155-188 9-42 (258)
231 cd08258 Zn_ADH4 Alcohol dehydr 73.4 38 0.00082 31.0 10.3 54 149-204 159-212 (306)
232 PRK06701 short chain dehydroge 73.4 29 0.00063 31.7 9.5 55 157-211 48-104 (290)
233 PRK12745 3-ketoacyl-(acyl-carr 73.4 25 0.00054 30.8 8.8 54 157-210 4-59 (256)
234 cd08250 Mgc45594_like Mgc45594 73.3 48 0.001 30.2 11.0 55 149-206 134-188 (329)
235 cd05282 ETR_like 2-enoyl thioe 73.2 27 0.00057 31.7 9.2 54 149-205 133-186 (323)
236 cd08246 crotonyl_coA_red croto 73.1 13 0.00028 35.4 7.3 55 150-207 189-243 (393)
237 PRK06500 short chain dehydroge 73.1 27 0.00059 30.4 8.9 51 156-209 7-58 (249)
238 COG0300 DltE Short-chain dehyd 73.0 26 0.00057 32.3 8.9 66 156-221 7-74 (265)
239 PRK08936 glucose-1-dehydrogena 72.8 29 0.00063 30.7 9.2 55 156-210 8-64 (261)
240 cd08278 benzyl_alcohol_DH Benz 72.6 30 0.00066 32.6 9.7 57 149-208 181-237 (365)
241 PRK12744 short chain dehydroge 72.5 22 0.00048 31.4 8.3 55 156-210 9-68 (257)
242 TIGR02415 23BDH acetoin reduct 72.5 24 0.00052 30.9 8.5 54 157-210 2-56 (254)
243 cd05286 QOR2 Quinone oxidoredu 72.5 48 0.0011 29.4 10.6 56 149-207 131-186 (320)
244 PRK14030 glutamate dehydrogena 72.2 19 0.00042 35.7 8.3 60 135-194 207-274 (445)
245 PRK08265 short chain dehydroge 72.0 29 0.00063 30.9 9.0 53 156-210 7-59 (261)
246 PRK07791 short chain dehydroge 71.9 26 0.00056 31.9 8.8 56 155-210 6-71 (286)
247 PRK06138 short chain dehydroge 71.8 27 0.00058 30.5 8.6 54 156-210 6-60 (252)
248 TIGR03325 BphB_TodD cis-2,3-di 71.6 29 0.00062 30.8 8.9 52 156-210 6-58 (262)
249 PRK06113 7-alpha-hydroxysteroi 71.6 24 0.00051 31.2 8.3 55 156-210 12-67 (255)
250 PRK06101 short chain dehydroge 71.3 28 0.00062 30.4 8.7 48 157-207 3-50 (240)
251 PF08659 KR: KR domain; Inter 71.2 21 0.00046 30.3 7.6 68 157-224 2-74 (181)
252 PRK05717 oxidoreductase; Valid 71.2 32 0.00069 30.3 9.0 54 155-210 10-63 (255)
253 PF09837 DUF2064: Uncharacteri 71.1 49 0.0011 26.6 9.2 97 171-273 2-99 (122)
254 TIGR01963 PHB_DH 3-hydroxybuty 71.0 23 0.0005 30.9 8.0 54 157-210 3-57 (255)
255 COG0137 ArgG Argininosuccinate 71.0 38 0.00082 33.0 9.7 129 156-293 5-145 (403)
256 PRK08017 oxidoreductase; Provi 70.9 38 0.00081 29.7 9.4 51 157-210 4-54 (256)
257 PF02826 2-Hacid_dh_C: D-isome 70.7 38 0.00082 28.8 9.0 105 157-284 37-143 (178)
258 cd08245 CAD Cinnamyl alcohol d 70.6 30 0.00064 31.7 9.0 55 150-208 158-212 (330)
259 PRK07985 oxidoreductase; Provi 70.4 29 0.00063 31.7 8.8 66 156-221 50-118 (294)
260 PRK06077 fabG 3-ketoacyl-(acyl 70.1 24 0.00053 30.7 8.0 55 156-210 7-63 (252)
261 PRK08264 short chain dehydroge 70.0 19 0.0004 31.3 7.1 33 156-188 7-40 (238)
262 cd08241 QOR1 Quinone oxidoredu 69.9 46 0.001 29.6 9.9 56 149-207 134-189 (323)
263 cd06270 PBP1_GalS_like Ligand 69.8 77 0.0017 27.8 19.5 34 260-295 176-213 (268)
264 PRK07231 fabG 3-ketoacyl-(acyl 69.8 37 0.00081 29.5 9.1 54 156-210 6-60 (251)
265 PRK08594 enoyl-(acyl carrier p 69.7 38 0.00082 30.2 9.2 54 156-209 8-65 (257)
266 PRK05693 short chain dehydroge 69.6 54 0.0012 29.2 10.3 51 157-210 3-53 (274)
267 PRK06947 glucose-1-dehydrogena 69.4 24 0.00051 30.9 7.7 55 157-211 4-60 (248)
268 PRK09422 ethanol-active dehydr 69.3 45 0.00097 30.6 9.9 57 148-208 156-213 (338)
269 cd06297 PBP1_LacI_like_12 Liga 69.3 81 0.0018 27.8 20.1 34 260-295 179-216 (269)
270 PRK08261 fabG 3-ketoacyl-(acyl 69.3 47 0.001 32.3 10.4 56 155-210 210-265 (450)
271 PRK10083 putative oxidoreducta 69.2 43 0.00094 30.8 9.8 58 147-207 153-211 (339)
272 PRK06463 fabG 3-ketoacyl-(acyl 69.2 62 0.0013 28.4 10.5 53 156-210 8-60 (255)
273 TIGR02853 spore_dpaA dipicolin 69.2 36 0.00079 31.5 9.2 87 113-204 108-196 (287)
274 cd08276 MDR7 Medium chain dehy 69.1 67 0.0014 29.1 10.9 55 149-207 155-209 (336)
275 PRK07774 short chain dehydroge 69.1 32 0.0007 30.0 8.5 54 156-209 7-61 (250)
276 PRK07904 short chain dehydroge 69.1 34 0.00074 30.4 8.8 54 156-209 9-66 (253)
277 cd08298 CAD2 Cinnamyl alcohol 69.1 27 0.00059 31.9 8.4 55 148-206 161-215 (329)
278 cd08249 enoyl_reductase_like e 69.0 25 0.00054 32.7 8.1 52 152-207 152-203 (339)
279 PRK09291 short chain dehydroge 68.9 16 0.00035 32.1 6.6 33 156-188 3-35 (257)
280 cd06268 PBP1_ABC_transporter_L 68.8 79 0.0017 27.5 14.6 145 140-295 56-223 (298)
281 cd06273 PBP1_GntR_like_1 This 68.7 80 0.0017 27.5 20.0 40 253-295 171-214 (268)
282 PRK07062 short chain dehydroge 68.5 32 0.0007 30.4 8.5 33 156-188 9-41 (265)
283 cd08267 MDR1 Medium chain dehy 68.5 32 0.00069 30.9 8.6 53 149-205 138-190 (319)
284 cd08272 MDR6 Medium chain dehy 68.1 66 0.0014 28.8 10.6 56 148-207 138-193 (326)
285 PRK05565 fabG 3-ketoacyl-(acyl 68.0 33 0.00072 29.7 8.3 56 156-211 6-63 (247)
286 cd08240 6_hydroxyhexanoate_dh_ 68.0 52 0.0011 30.5 10.1 53 152-207 173-225 (350)
287 cd06283 PBP1_RegR_EndR_KdgR_li 68.0 81 0.0018 27.4 20.5 34 260-295 177-214 (267)
288 TIGR02823 oxido_YhdH putative 67.8 33 0.00071 31.2 8.6 53 151-206 141-194 (323)
289 PRK12859 3-ketoacyl-(acyl-carr 67.7 30 0.00066 30.6 8.1 56 156-211 7-76 (256)
290 cd08260 Zn_ADH6 Alcohol dehydr 67.6 51 0.0011 30.4 9.9 52 149-204 160-211 (345)
291 PRK08192 aspartate carbamoyltr 67.4 26 0.00056 33.5 7.9 53 158-210 161-219 (338)
292 PRK08339 short chain dehydroge 67.4 31 0.00066 30.9 8.1 34 155-188 8-41 (263)
293 PRK05370 argininosuccinate syn 67.4 1.4E+02 0.003 29.8 15.9 129 154-293 10-155 (447)
294 PLN02702 L-idonate 5-dehydroge 67.4 40 0.00086 31.6 9.2 57 148-207 175-231 (364)
295 KOG0024 Sorbitol dehydrogenase 67.2 22 0.00047 34.0 7.1 63 145-210 160-222 (354)
296 PRK07775 short chain dehydroge 67.1 36 0.00077 30.6 8.6 56 156-211 11-67 (274)
297 PRK09072 short chain dehydroge 67.1 32 0.0007 30.4 8.2 33 156-188 6-38 (263)
298 PRK06483 dihydromonapterin red 67.1 61 0.0013 28.1 9.8 53 156-210 3-55 (236)
299 PRK06079 enoyl-(acyl carrier p 67.1 35 0.00076 30.2 8.4 32 156-187 8-41 (252)
300 cd08235 iditol_2_DH_like L-idi 66.9 75 0.0016 29.2 10.9 56 149-207 160-215 (343)
301 cd08279 Zn_ADH_class_III Class 66.8 58 0.0013 30.5 10.3 56 148-206 176-231 (363)
302 PRK10538 malonic semialdehyde 66.5 41 0.00089 29.5 8.7 51 157-210 2-53 (248)
303 PRK09242 tropinone reductase; 66.4 37 0.0008 29.9 8.4 56 156-211 10-68 (257)
304 cd08282 PFDH_like Pseudomonas 66.4 34 0.00074 32.3 8.6 55 148-205 170-224 (375)
305 PRK11891 aspartate carbamoyltr 66.4 23 0.00049 35.0 7.4 51 159-209 244-300 (429)
306 PRK08862 short chain dehydroge 66.3 75 0.0016 27.8 10.3 84 181-271 6-93 (227)
307 PRK09730 putative NAD(P)-bindi 66.2 52 0.0011 28.5 9.2 65 157-221 3-69 (247)
308 cd08264 Zn_ADH_like2 Alcohol d 66.2 32 0.00069 31.4 8.2 39 148-186 156-194 (325)
309 PRK06953 short chain dehydroge 66.2 71 0.0015 27.4 10.0 51 157-210 3-53 (222)
310 cd05276 p53_inducible_oxidored 66.1 86 0.0019 27.8 10.9 54 150-206 135-188 (323)
311 PLN02586 probable cinnamyl alc 66.1 34 0.00074 32.3 8.5 55 150-207 179-233 (360)
312 cd08299 alcohol_DH_class_I_II_ 66.1 55 0.0012 31.0 10.0 54 148-204 184-237 (373)
313 cd08290 ETR 2-enoyl thioester 66.0 32 0.0007 31.6 8.2 59 150-208 142-201 (341)
314 PTZ00079 NADP-specific glutama 65.9 32 0.00069 34.3 8.4 53 135-187 216-268 (454)
315 PRK07069 short chain dehydroge 65.9 62 0.0013 28.1 9.7 31 158-188 2-32 (251)
316 PRK08306 dipicolinate synthase 65.9 46 0.001 30.9 9.2 46 158-206 154-199 (296)
317 PLN02342 ornithine carbamoyltr 65.8 23 0.0005 34.0 7.2 60 148-209 188-251 (348)
318 cd08259 Zn_ADH5 Alcohol dehydr 65.7 42 0.0009 30.5 8.8 52 150-204 158-209 (332)
319 cd05281 TDH Threonine dehydrog 65.6 35 0.00075 31.6 8.4 52 153-207 162-213 (341)
320 PRK00779 ornithine carbamoyltr 65.3 30 0.00065 32.4 7.8 60 149-209 147-209 (304)
321 PRK06198 short chain dehydroge 65.3 40 0.00086 29.6 8.4 55 156-210 7-63 (260)
322 cd06285 PBP1_LacI_like_7 Ligan 65.3 94 0.002 27.1 20.3 41 252-295 167-211 (265)
323 PLN02583 cinnamoyl-CoA reducta 65.2 37 0.00081 31.0 8.4 34 155-188 6-39 (297)
324 cd08248 RTN4I1 Human Reticulon 65.1 34 0.00073 31.6 8.2 47 155-205 163-209 (350)
325 cd06295 PBP1_CelR Ligand bindi 65.1 97 0.0021 27.2 19.9 34 260-295 185-222 (275)
326 PLN02253 xanthoxin dehydrogena 65.1 32 0.0007 30.8 7.9 32 156-187 19-50 (280)
327 PRK08642 fabG 3-ketoacyl-(acyl 65.0 55 0.0012 28.5 9.2 52 156-209 6-58 (253)
328 PRK07063 short chain dehydroge 65.0 42 0.00092 29.6 8.5 55 156-210 8-65 (260)
329 PLN02527 aspartate carbamoyltr 64.9 42 0.00091 31.5 8.7 59 149-209 146-210 (306)
330 PRK05650 short chain dehydroge 64.8 40 0.00087 30.0 8.4 54 157-210 2-56 (270)
331 PRK07576 short chain dehydroge 64.7 39 0.00085 30.1 8.3 55 156-210 10-65 (264)
332 TIGR02817 adh_fam_1 zinc-bindi 64.7 45 0.00098 30.5 8.9 50 155-207 149-199 (336)
333 PRK06505 enoyl-(acyl carrier p 64.5 61 0.0013 29.2 9.6 32 156-187 8-41 (271)
334 cd05280 MDR_yhdh_yhfp Yhdh and 64.5 51 0.0011 29.8 9.2 49 156-207 148-196 (325)
335 PRK06720 hypothetical protein; 64.4 56 0.0012 27.6 8.7 53 156-208 17-70 (169)
336 PRK07326 short chain dehydroge 64.1 44 0.00096 28.8 8.4 32 156-187 7-38 (237)
337 PRK08251 short chain dehydroge 63.9 41 0.0009 29.3 8.2 56 156-211 3-61 (248)
338 PRK06841 short chain dehydroge 63.7 59 0.0013 28.4 9.2 33 156-188 16-48 (255)
339 PRK12827 short chain dehydroge 63.7 59 0.0013 28.1 9.1 66 156-221 7-77 (249)
340 PRK12747 short chain dehydroge 63.5 36 0.00077 29.9 7.7 54 156-209 5-60 (252)
341 TIGR01829 AcAcCoA_reduct aceto 63.4 35 0.00075 29.5 7.5 54 157-210 2-57 (242)
342 cd05278 FDH_like Formaldehyde 63.3 45 0.00097 30.7 8.6 55 149-206 162-216 (347)
343 cd06320 PBP1_allose_binding Pe 63.3 1.1E+02 0.0023 27.0 17.7 43 250-295 172-216 (275)
344 PRK12825 fabG 3-ketoacyl-(acyl 63.1 60 0.0013 27.9 9.0 55 156-210 7-63 (249)
345 PRK07831 short chain dehydroge 63.1 60 0.0013 28.7 9.1 32 155-186 17-49 (262)
346 TIGR01831 fabG_rel 3-oxoacyl-( 63.0 31 0.00067 29.9 7.1 53 159-211 2-56 (239)
347 PF02254 TrkA_N: TrkA-N domain 62.9 67 0.0015 24.6 9.4 49 159-210 1-49 (116)
348 PRK06924 short chain dehydroge 62.7 51 0.0011 28.7 8.6 52 157-209 3-54 (251)
349 PRK07067 sorbitol dehydrogenas 62.6 61 0.0013 28.5 9.1 33 156-188 7-39 (257)
350 PRK06123 short chain dehydroge 62.6 33 0.00072 29.8 7.3 66 156-221 3-70 (248)
351 PRK07023 short chain dehydroge 62.6 41 0.00089 29.3 7.9 50 157-210 3-52 (243)
352 cd00401 AdoHcyase S-adenosyl-L 62.6 20 0.00043 35.3 6.2 53 150-206 197-249 (413)
353 cd08270 MDR4 Medium chain dehy 62.5 54 0.0012 29.4 8.9 48 154-204 132-179 (305)
354 TIGR00658 orni_carb_tr ornithi 62.5 36 0.00079 31.9 7.8 60 149-209 143-208 (304)
355 PRK12748 3-ketoacyl-(acyl-carr 62.4 60 0.0013 28.6 9.0 56 156-211 6-75 (256)
356 PRK07533 enoyl-(acyl carrier p 62.3 55 0.0012 29.1 8.8 33 156-188 11-45 (258)
357 TIGR03590 PseG pseudaminic aci 62.3 1.1E+02 0.0023 28.1 10.8 81 121-210 2-88 (279)
358 cd05313 NAD_bind_2_Glu_DH NAD( 62.2 34 0.00073 31.4 7.3 53 135-187 17-69 (254)
359 cd05284 arabinose_DH_like D-ar 62.1 47 0.001 30.5 8.5 53 151-207 164-217 (340)
360 cd05283 CAD1 Cinnamyl alcohol 62.1 52 0.0011 30.4 8.8 52 152-207 167-218 (337)
361 CHL00194 ycf39 Ycf39; Provisio 62.0 27 0.00059 32.3 6.9 32 157-188 2-33 (317)
362 PRK08220 2,3-dihydroxybenzoate 62.0 46 0.00099 29.0 8.1 34 156-189 9-42 (252)
363 PF13407 Peripla_BP_4: Peripla 61.8 1.1E+02 0.0024 26.6 14.8 151 136-295 41-216 (257)
364 PRK12771 putative glutamate sy 61.5 17 0.00038 36.8 5.9 55 153-208 135-207 (564)
365 PRK08416 7-alpha-hydroxysteroi 61.5 57 0.0012 28.9 8.7 55 156-210 9-66 (260)
366 cd05211 NAD_bind_Glu_Leu_Phe_V 61.4 34 0.00075 30.4 7.1 52 137-188 4-55 (217)
367 PRK07856 short chain dehydroge 61.3 42 0.0009 29.5 7.7 33 156-188 7-39 (252)
368 cd08286 FDH_like_ADH2 formalde 61.3 64 0.0014 29.8 9.3 54 149-206 161-215 (345)
369 PRK07102 short chain dehydroge 61.3 65 0.0014 28.0 8.9 54 157-210 3-58 (243)
370 PRK08177 short chain dehydroge 61.2 80 0.0017 27.2 9.4 33 157-189 3-35 (225)
371 COG2518 Pcm Protein-L-isoaspar 61.0 26 0.00057 31.2 6.2 112 141-272 59-172 (209)
372 cd08234 threonine_DH_like L-th 60.9 1E+02 0.0022 28.1 10.5 54 148-204 153-206 (334)
373 PF04989 CmcI: Cephalosporin h 60.9 20 0.00042 31.9 5.3 44 250-295 23-67 (206)
374 smart00822 PKS_KR This enzymat 60.7 59 0.0013 25.9 8.0 55 157-211 2-61 (180)
375 TIGR01316 gltA glutamate synth 60.4 31 0.00066 33.9 7.2 51 158-208 274-329 (449)
376 cd08238 sorbose_phosphate_red 60.4 1.1E+02 0.0024 29.4 11.1 59 149-209 170-238 (410)
377 PRK09423 gldA glycerol dehydro 60.3 84 0.0018 30.0 10.1 17 172-188 22-38 (366)
378 PRK03692 putative UDP-N-acetyl 60.3 59 0.0013 29.5 8.5 92 169-272 70-168 (243)
379 TIGR02095 glgA glycogen/starch 60.1 77 0.0017 31.0 10.1 101 165-277 20-144 (473)
380 PRK07370 enoyl-(acyl carrier p 60.1 67 0.0014 28.6 8.9 53 156-208 7-64 (258)
381 TIGR02417 fruct_sucro_rep D-fr 60.0 1.4E+02 0.003 27.2 20.7 33 261-295 238-273 (327)
382 COG2085 Predicted dinucleotide 59.9 54 0.0012 29.2 7.9 77 158-236 3-92 (211)
383 cd05289 MDR_like_2 alcohol deh 59.9 89 0.0019 27.6 9.7 50 150-203 140-189 (309)
384 PRK06180 short chain dehydroge 59.8 61 0.0013 29.0 8.7 51 156-209 5-56 (277)
385 KOG1210 Predicted 3-ketosphing 59.4 74 0.0016 30.3 9.1 32 157-188 35-66 (331)
386 PRK07550 hypothetical protein; 59.3 1.2E+02 0.0026 28.7 10.9 51 159-210 93-143 (386)
387 PRK06197 short chain dehydroge 59.3 50 0.0011 30.1 8.1 33 156-188 17-49 (306)
388 PRK12824 acetoacetyl-CoA reduc 59.1 65 0.0014 27.8 8.5 66 157-222 4-71 (245)
389 PF13460 NAD_binding_10: NADH( 58.8 28 0.00061 28.9 5.9 33 158-190 1-33 (183)
390 PRK02102 ornithine carbamoyltr 58.8 66 0.0014 30.6 8.9 59 149-209 150-216 (331)
391 PRK13376 pyrB bifunctional asp 58.8 39 0.00084 34.3 7.7 53 158-210 176-234 (525)
392 PRK12384 sorbitol-6-phosphate 58.7 72 0.0016 28.0 8.8 33 156-188 3-35 (259)
393 PRK07577 short chain dehydroge 58.7 1E+02 0.0022 26.4 9.6 34 156-189 4-37 (234)
394 PRK04284 ornithine carbamoyltr 58.7 63 0.0014 30.7 8.8 51 159-209 158-216 (332)
395 PRK06125 short chain dehydroge 58.6 56 0.0012 28.8 8.1 32 156-187 8-39 (259)
396 COG0026 PurK Phosphoribosylami 58.6 42 0.00091 32.5 7.5 32 158-189 3-34 (375)
397 PF02887 PK_C: Pyruvate kinase 58.6 83 0.0018 24.7 8.3 66 157-227 19-86 (117)
398 PRK01077 cobyrinic acid a,c-di 58.5 1.2E+02 0.0025 30.0 11.0 133 157-294 5-149 (451)
399 PRK08945 putative oxoacyl-(acy 58.3 70 0.0015 27.9 8.6 34 155-188 12-45 (247)
400 PRK06200 2,3-dihydroxy-2,3-dih 58.2 79 0.0017 27.9 9.0 51 156-209 7-58 (263)
401 TIGR02685 pter_reduc_Leis pter 58.2 1.3E+02 0.0029 26.6 11.9 30 157-186 3-32 (267)
402 PRK07984 enoyl-(acyl carrier p 58.1 74 0.0016 28.6 8.9 45 156-200 7-53 (262)
403 PRK07201 short chain dehydroge 58.0 40 0.00086 34.4 7.9 56 155-210 371-427 (657)
404 cd05285 sorbitol_DH Sorbitol d 58.0 1.6E+02 0.0034 27.2 13.7 58 147-207 155-212 (343)
405 PRK05854 short chain dehydroge 58.0 48 0.001 30.6 7.8 72 156-227 15-90 (313)
406 cd08255 2-desacetyl-2-hydroxye 57.8 63 0.0014 28.6 8.4 51 148-202 91-142 (277)
407 cd08265 Zn_ADH3 Alcohol dehydr 57.8 64 0.0014 30.6 8.8 55 150-207 199-253 (384)
408 PRK05875 short chain dehydroge 57.7 58 0.0013 29.0 8.1 33 156-188 8-40 (276)
409 cd06317 PBP1_ABC_sugar_binding 57.2 1.3E+02 0.0029 26.2 18.7 47 246-295 173-221 (275)
410 PRK12746 short chain dehydroge 57.1 75 0.0016 27.7 8.6 55 156-210 7-63 (254)
411 PRK08690 enoyl-(acyl carrier p 57.0 63 0.0014 28.8 8.2 44 156-199 7-52 (261)
412 PF04127 DFP: DNA / pantothena 57.0 50 0.0011 28.7 7.2 62 157-227 21-82 (185)
413 PRK09701 D-allose transporter 56.9 1.6E+02 0.0034 26.9 16.9 43 250-295 206-250 (311)
414 PRK07453 protochlorophyllide o 56.8 56 0.0012 30.1 8.0 33 156-188 7-39 (322)
415 PRK02255 putrescine carbamoylt 56.7 46 0.00099 31.8 7.5 51 159-209 157-214 (338)
416 KOG0725 Reductases with broad 56.7 1.3E+02 0.0029 27.4 10.4 34 155-188 8-41 (270)
417 PRK14804 ornithine carbamoyltr 56.6 40 0.00087 31.7 7.0 35 157-191 155-189 (311)
418 smart00829 PKS_ER Enoylreducta 56.5 1.2E+02 0.0026 26.3 9.8 53 148-203 98-150 (288)
419 PLN02918 pyridoxine (pyridoxam 56.3 86 0.0019 32.0 9.7 49 157-205 137-192 (544)
420 cd05195 enoyl_red enoyl reduct 56.1 1.3E+02 0.0029 25.9 10.1 51 149-202 103-153 (293)
421 cd06313 PBP1_ABC_sugar_binding 56.0 1E+02 0.0023 27.3 9.5 43 250-295 173-216 (272)
422 PRK06057 short chain dehydroge 56.0 1.2E+02 0.0026 26.6 9.8 53 155-210 7-60 (255)
423 PRK12742 oxidoreductase; Provi 55.9 83 0.0018 27.1 8.6 53 156-210 7-60 (237)
424 TIGR01830 3oxo_ACP_reduc 3-oxo 55.8 66 0.0014 27.6 8.0 63 159-221 2-66 (239)
425 PRK07889 enoyl-(acyl carrier p 55.8 73 0.0016 28.3 8.4 31 156-186 8-40 (256)
426 PRK06348 aspartate aminotransf 55.7 1.5E+02 0.0032 28.1 11.0 81 159-240 92-174 (384)
427 PRK06202 hypothetical protein; 55.6 15 0.00033 32.4 3.9 35 261-295 61-95 (232)
428 PRK06914 short chain dehydroge 55.6 1.1E+02 0.0023 27.3 9.5 33 156-188 4-36 (280)
429 PF01262 AlaDh_PNT_C: Alanine 55.5 39 0.00085 28.4 6.2 49 158-209 22-70 (168)
430 PRK07832 short chain dehydroge 55.2 45 0.00098 29.8 7.0 49 157-205 2-51 (272)
431 PF00091 Tubulin: Tubulin/FtsZ 55.1 46 0.001 29.2 6.8 57 238-294 90-161 (216)
432 PRK07060 short chain dehydroge 55.1 1.1E+02 0.0024 26.4 9.3 52 156-210 10-62 (245)
433 cd08236 sugar_DH NAD(P)-depend 55.0 1.7E+02 0.0037 26.8 14.0 55 150-208 155-210 (343)
434 PRK12829 short chain dehydroge 54.6 86 0.0019 27.4 8.6 34 155-188 11-44 (264)
435 PRK08415 enoyl-(acyl carrier p 54.5 1.2E+02 0.0026 27.4 9.7 55 156-210 6-64 (274)
436 PRK02610 histidinol-phosphate 54.5 66 0.0014 30.5 8.3 52 159-210 94-145 (374)
437 PLN02178 cinnamyl-alcohol dehy 54.5 34 0.00075 32.6 6.4 52 153-207 177-228 (375)
438 cd08271 MDR5 Medium chain dehy 54.4 1.4E+02 0.0031 26.6 10.3 55 148-206 135-189 (325)
439 PRK11706 TDP-4-oxo-6-deoxy-D-g 54.2 49 0.0011 31.5 7.3 52 159-210 49-100 (375)
440 cd08268 MDR2 Medium chain dehy 53.8 1.6E+02 0.0035 26.2 10.7 54 149-205 139-192 (328)
441 cd08262 Zn_ADH8 Alcohol dehydr 53.8 1.8E+02 0.0039 26.6 14.0 58 147-207 154-211 (341)
442 PRK07825 short chain dehydroge 53.8 1.1E+02 0.0023 27.3 9.1 52 156-210 6-59 (273)
443 PLN02514 cinnamyl-alcohol dehy 53.5 84 0.0018 29.5 8.8 56 149-207 175-230 (357)
444 KOG1197 Predicted quinone oxid 53.4 1.3E+02 0.0029 28.0 9.4 54 148-204 140-193 (336)
445 TIGR03845 sulfopyru_alph sulfo 53.3 1.4E+02 0.0029 25.1 10.3 75 158-233 61-149 (157)
446 PRK01713 ornithine carbamoyltr 53.2 34 0.00075 32.5 6.0 51 159-209 159-217 (334)
447 TIGR00561 pntA NAD(P) transhyd 53.1 86 0.0019 31.8 9.1 50 158-210 166-215 (511)
448 cd06284 PBP1_LacI_like_6 Ligan 52.9 1.5E+02 0.0033 25.6 19.4 41 252-295 168-212 (267)
449 PRK06603 enoyl-(acyl carrier p 52.5 1.2E+02 0.0026 26.9 9.3 32 156-187 9-42 (260)
450 PLN02986 cinnamyl-alcohol dehy 52.4 80 0.0017 28.9 8.3 37 155-191 5-41 (322)
451 PRK07024 short chain dehydroge 52.3 62 0.0014 28.5 7.3 33 156-188 3-35 (257)
452 cd08283 FDH_like_1 Glutathione 52.3 1.2E+02 0.0027 28.7 9.8 56 148-206 178-234 (386)
453 PRK10490 sensor protein KdpD; 52.3 1.1E+02 0.0024 33.1 10.3 109 155-270 250-375 (895)
454 PRK12562 ornithine carbamoyltr 52.3 41 0.00089 32.1 6.4 52 158-209 158-217 (334)
455 cd06280 PBP1_LacI_like_4 Ligan 52.0 1.6E+02 0.0035 25.6 20.8 34 260-295 171-208 (263)
456 PRK08159 enoyl-(acyl carrier p 52.0 87 0.0019 28.2 8.3 48 156-203 11-61 (272)
457 PRK08410 2-hydroxyacid dehydro 51.9 1.3E+02 0.0028 28.2 9.6 109 157-295 146-256 (311)
458 cd08263 Zn_ADH10 Alcohol dehyd 51.9 82 0.0018 29.5 8.4 52 150-204 183-234 (367)
459 PRK12936 3-ketoacyl-(acyl-carr 51.8 1.1E+02 0.0024 26.3 8.8 52 156-210 7-59 (245)
460 PRK06702 O-acetylhomoserine am 51.7 1.5E+02 0.0033 29.2 10.4 78 159-241 79-160 (432)
461 PRK03515 ornithine carbamoyltr 51.6 40 0.00088 32.1 6.2 51 159-209 159-217 (336)
462 PRK08267 short chain dehydroge 51.5 71 0.0015 28.1 7.6 32 157-188 3-34 (260)
463 cd08266 Zn_ADH_like1 Alcohol d 51.5 1.7E+02 0.0036 26.3 10.2 53 149-204 161-213 (342)
464 cd08177 MAR Maleylacetate redu 51.3 1.5E+02 0.0032 28.0 10.0 14 261-275 77-90 (337)
465 cd08193 HVD 5-hydroxyvalerate 51.3 2E+02 0.0043 27.5 11.1 14 261-275 83-96 (376)
466 PRK12831 putative oxidoreducta 51.1 53 0.0012 32.5 7.3 51 158-208 283-338 (464)
467 PRK08535 translation initiatio 50.9 67 0.0015 30.2 7.5 69 137-210 131-203 (310)
468 PRK04148 hypothetical protein; 50.8 79 0.0017 26.1 7.0 49 158-210 19-67 (134)
469 PRK05826 pyruvate kinase; Prov 50.7 2.1E+02 0.0045 28.7 11.3 119 171-294 264-402 (465)
470 KOG1198 Zinc-binding oxidoredu 50.7 1.1E+02 0.0023 29.4 9.0 54 151-207 154-207 (347)
471 KOG1205 Predicted dehydrogenas 50.5 89 0.0019 29.1 8.1 55 156-210 13-70 (282)
472 cd06278 PBP1_LacI_like_2 Ligan 50.5 1.7E+02 0.0036 25.3 18.9 40 253-295 167-211 (266)
473 PRK12779 putative bifunctional 50.5 53 0.0011 35.8 7.6 99 154-272 304-403 (944)
474 TIGR01289 LPOR light-dependent 50.2 76 0.0017 29.3 7.8 33 156-188 4-37 (314)
475 PRK06482 short chain dehydroge 50.2 95 0.0021 27.6 8.3 50 157-209 4-54 (276)
476 PRK14031 glutamate dehydrogena 50.2 54 0.0012 32.6 7.0 53 135-187 207-259 (444)
477 cd08551 Fe-ADH iron-containing 50.1 1.7E+02 0.0038 27.7 10.4 22 253-275 71-93 (370)
478 PRK09414 glutamate dehydrogena 50.1 58 0.0013 32.4 7.2 52 136-187 212-263 (445)
479 PRK13243 glyoxylate reductase; 50.0 2.3E+02 0.0049 26.8 11.0 104 157-284 151-256 (333)
480 cd08550 GlyDH-like Glycerol_de 50.0 65 0.0014 30.5 7.4 8 266-273 81-88 (349)
481 COG1433 Uncharacterized conser 49.9 97 0.0021 25.1 7.3 52 168-222 54-105 (121)
482 TIGR00379 cobB cobyrinic acid 49.9 2E+02 0.0044 28.3 11.1 43 251-294 102-145 (449)
483 PF13478 XdhC_C: XdhC Rossmann 49.7 27 0.00059 28.7 4.2 31 159-189 1-31 (136)
484 PRK06849 hypothetical protein; 49.6 1.4E+02 0.0031 28.4 9.8 33 156-188 5-37 (389)
485 PRK07533 enoyl-(acyl carrier p 49.6 1.7E+02 0.0036 25.9 9.7 85 181-272 11-99 (258)
486 PLN02686 cinnamoyl-CoA reducta 49.6 70 0.0015 30.4 7.6 34 155-188 53-86 (367)
487 PF03853 YjeF_N: YjeF-related 49.5 93 0.002 26.3 7.6 55 156-210 26-89 (169)
488 cd06296 PBP1_CatR_like Ligand- 49.5 1.8E+02 0.0038 25.3 20.2 34 260-295 177-214 (270)
489 PRK15452 putative protease; Pr 49.5 2.7E+02 0.0059 27.6 11.8 101 183-293 5-115 (443)
490 PRK07074 short chain dehydroge 49.5 1.2E+02 0.0027 26.4 8.8 32 156-187 3-34 (257)
491 PRK12809 putative oxidoreducta 49.4 82 0.0018 32.6 8.5 53 157-209 311-381 (639)
492 TIGR00511 ribulose_e2b2 ribose 49.3 76 0.0017 29.7 7.6 71 137-210 126-198 (301)
493 PF02310 B12-binding: B12 bind 49.1 1.2E+02 0.0026 23.3 8.8 94 170-271 19-114 (121)
494 cd07766 DHQ_Fe-ADH Dehydroquin 49.1 2.2E+02 0.0048 26.4 10.8 9 266-274 82-90 (332)
495 PRK14805 ornithine carbamoyltr 49.1 61 0.0013 30.4 6.9 60 148-209 141-207 (302)
496 PRK05928 hemD uroporphyrinogen 48.7 1.6E+02 0.0034 25.6 9.3 42 169-211 89-134 (249)
497 PRK05447 1-deoxy-D-xylulose 5- 48.7 2.7E+02 0.0058 27.2 12.8 110 157-284 3-114 (385)
498 cd08275 MDR3 Medium chain dehy 48.7 1.7E+02 0.0037 26.3 9.9 57 148-207 132-188 (337)
499 PLN02477 glutamate dehydrogena 48.7 1E+02 0.0022 30.3 8.6 52 136-187 186-237 (410)
500 PF12000 Glyco_trans_4_3: Gkyc 48.6 37 0.00079 29.2 4.9 43 246-294 52-94 (171)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-51 Score=373.28 Aligned_cols=199 Identities=50% Similarity=0.813 Sum_probs=189.8
Q ss_pred hhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHH
Q 022547 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (295)
Q Consensus 96 ~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa 175 (295)
+.+.+.+++|||++++++....+++||+|+|++||+||.|||.|.+||.+|+++|.|+||+ +|||+||||+|++||++|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHH
Confidence 3577889999999999999888899999999999999999999999999999999999995 699999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCC-hHHHHHHHHHHHHcCCC-eEEecCCCChHHHHHHHHHHHHH
Q 022547 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG-LRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 176 ~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~-~~~a~~~a~~~a~~~~~-~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+.+|+++++|||++++.+|+++|++|||+|+.++...+ +..+++++.+++++.++ .++.+||+|++||.+||.|++.|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998444 89999999999999888 77888999999999999999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+++.+|+||+++|||||++|++++||+.+|+++||+||
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vd 203 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVD 203 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEEC
Confidence 999998889999999999999999999999999999999997
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.5e-49 Score=382.86 Aligned_cols=206 Identities=68% Similarity=1.124 Sum_probs=193.7
Q ss_pred cccchhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHH
Q 022547 90 HGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGL 169 (295)
Q Consensus 90 ~~~~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~ 169 (295)
+.++++.++.+.+++|||++++.+++..+++||+|+|++||+||||||+|.++|.+++++|.+.+|+.+||++|+||||+
T Consensus 109 ~~~~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ 188 (429)
T PLN03013 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGI 188 (429)
T ss_pred cHHHHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHH
Confidence 34457788999999999999999988878899999999999999999999999999999999999977899999999999
Q ss_pred HHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHH
Q 022547 170 GIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDS 249 (295)
Q Consensus 170 AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t 249 (295)
|+|++|+.+|++++||||+.++.+|+++|+.+||+|+.+++..+++++++.+.+++++.+++||++||+|+.|+.+||.|
T Consensus 189 ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~t 268 (429)
T PLN03013 189 GLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYET 268 (429)
T ss_pred HHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987656778999999998886688999999999999889999
Q ss_pred HHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 250 TGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 250 ~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
+|+||++|+++.+|+||+++||||+++|++++||+.+|++|||+|+
T Consensus 269 tg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVe 314 (429)
T PLN03013 269 TGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVE 314 (429)
T ss_pred HHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEE
Confidence 9999999997789999999999999999999999999999999995
No 3
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=9.7e-50 Score=380.35 Aligned_cols=222 Identities=55% Similarity=0.933 Sum_probs=201.2
Q ss_pred CCcccccchhHhhhhhcCCCcccchhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHc
Q 022547 70 SSSLYATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEES 149 (295)
Q Consensus 70 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~ 149 (295)
.||+|+..+...+. .++.+++.+++...+++|||+++++++..+|++||+|+|++||+||||||++.+++.+++++
T Consensus 29 ~~~~~~~~~~~~~~----~~~~~~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~ 104 (368)
T PLN02556 29 GSPSFAQRLRDLPK----DLPGTKIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKK 104 (368)
T ss_pred cccccccccchhhh----hCCcchhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHc
Confidence 46777765444433 34445566789999999999999999888889999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCC
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTP 229 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~ 229 (295)
|.+.||.++||++|+||||+|+|++|+.+|++|+||||+.++..|++.|+.+||+|+.++...++.+.++.+.+++++.+
T Consensus 105 G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~ 184 (368)
T PLN02556 105 NLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTP 184 (368)
T ss_pred CCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcC
Confidence 99999988899999999999999999999999999999999999999999999999999865455678888888888877
Q ss_pred CeEEecCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 230 NAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 230 ~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
++||++||+|+.++++||.++|+||++|+.+.+|+||+++|||||++|+++++|+.+|++|||+|+
T Consensus 185 ~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVe 250 (368)
T PLN02556 185 DAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVE 250 (368)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEe
Confidence 899999999999997899999999999986689999999999999999999999999999999995
No 4
>PLN02565 cysteine synthase
Probab=100.00 E-value=2e-48 Score=365.65 Aligned_cols=201 Identities=67% Similarity=1.101 Sum_probs=187.3
Q ss_pred hhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHH
Q 022547 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (295)
Q Consensus 95 ~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~a 174 (295)
+..+...+++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.++|.+.+|++.||++|+||||+|+|++
T Consensus 6 ~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~ 85 (322)
T PLN02565 6 AKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFM 85 (322)
T ss_pred hhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHH
Confidence 34678889999999999887666789999999999999999999999999999999888887779999999999999999
Q ss_pred HHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHH
Q 022547 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (295)
Q Consensus 175 a~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI 254 (295)
|+.+|++|+||||++++..|++.|+.+||+|+.++...+++++++.+.+++++.++.|+++||+|+.|+..||.|+|+||
T Consensus 86 a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei 165 (322)
T PLN02565 86 AAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEI 165 (322)
T ss_pred HHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998755578889999998887668899999999999888999999999
Q ss_pred HHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 255 ~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
++|+++.+|+||+|+|+||+++|++.+||+.+|++|||+|+
T Consensus 166 ~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Ve 206 (322)
T PLN02565 166 WKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVE 206 (322)
T ss_pred HHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99997689999999999999999999999999999999985
No 5
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=6.6e-48 Score=358.40 Aligned_cols=200 Identities=41% Similarity=0.676 Sum_probs=186.6
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+++++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++.+++++|.+.++ .+||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHH
Confidence 45678888999999999999888889999999999999999999999999999999988877 45899999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||+.++..|++.|+.+||+|+.++...+++++.+.+.+++++. +++|++||+|+.++..||.|+|+|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999997556888988899888874 778999999999998889999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+++.+|+||+|+|+||+++|++++||+.+|++|||+|+
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVe 201 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQ 201 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999996679999999999999999999999999999999985
No 6
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-48 Score=356.61 Aligned_cols=208 Identities=57% Similarity=0.907 Sum_probs=199.6
Q ss_pred CCcccchhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCcc
Q 022547 88 DFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNT 167 (295)
Q Consensus 88 ~~~~~~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 167 (295)
..++..+.+.+...+|+|||+++++++..+.++||+|+|.+||+||.|||.++.|+.+|+++|.++||+++|+++||||+
T Consensus 36 ~~~~~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNt 115 (362)
T KOG1252|consen 36 RAERILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNT 115 (362)
T ss_pred cchhhhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCch
Confidence 44556777899999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHH---HHHHHHHHHHcCCCeEEecCCCChHHHH
Q 022547 168 GLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG---ALDKAEEIVLNTPNAYMFQQFDNMANLK 244 (295)
Q Consensus 168 g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~---a~~~a~~~a~~~~~~~~~~~~~n~~~~~ 244 (295)
|++||++|+..|++|+++||++++.+|+..|+++||+|+.++...+++. ++..+.++..+.++.|.++||.|+.|+.
T Consensus 116 GigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~ 195 (362)
T KOG1252|consen 116 GIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPL 195 (362)
T ss_pred HHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcc
Confidence 9999999999999999999999999999999999999999998766766 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 245 IHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 245 ~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
.||.|+|+|||+|+.+++|.||.++|||||++|+.+++|+++|+++|++||
T Consensus 196 ~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vd 246 (362)
T KOG1252|consen 196 AHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVD 246 (362)
T ss_pred cccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999997
No 7
>PLN00011 cysteine synthase
Probab=100.00 E-value=5.8e-47 Score=356.00 Aligned_cols=202 Identities=61% Similarity=1.016 Sum_probs=186.0
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
.++.+...+++|||+++++++...|.+||+|+|++|||||||+|++.+++..++++|.+.|+.++||++|+||||+|+|+
T Consensus 7 ~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~ 86 (323)
T PLN00011 7 IKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLAC 86 (323)
T ss_pred HHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHH
Confidence 45567788999999999998877678999999999999999999999999999999999888667999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||..+++.|+++|+.+||+|+.++...+.++.++.+.+++++.+++|+++||+|+.++..||.+++.|
T Consensus 87 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~E 166 (323)
T PLN00011 87 IGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPE 166 (323)
T ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875445567888888887766789999999998887799999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+.+.+|+||+|+|+|||++|+++++|+.+|++|||||+
T Consensus 167 I~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe 208 (323)
T PLN00011 167 IWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVE 208 (323)
T ss_pred HHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEe
Confidence 999986689999999999999999999999999999999985
No 8
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=5.9e-47 Score=351.04 Aligned_cols=196 Identities=43% Similarity=0.698 Sum_probs=182.4
Q ss_pred hhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHH
Q 022547 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV 177 (295)
Q Consensus 98 i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~ 177 (295)
+...+++|||+++++++...|.+||+|+|++||+||||+|++.+++.+++++|.+.+++ .||++|+||||+++|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCC-EEEEECCChHHHHHHHHHHH
Confidence 45678999999999999888899999999999999999999999999999999988774 58999999999999999999
Q ss_pred cCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHHh
Q 022547 178 KGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWED 257 (295)
Q Consensus 178 ~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Q 257 (295)
+|++|+||||+.++..|++.|+.+||+|+.++...+++++.+.+.+++++. +.+|++||+|+.++..||.|++.||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987556888989999998886 4468899999999987899999999999
Q ss_pred hCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 258 TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 258 l~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
+++.+|+||+|+|+||+++|++.+||+.+|++|||+|+
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Ve 197 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQ 197 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 97689999999999999999999999999999999985
No 9
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=2.3e-46 Score=348.26 Aligned_cols=196 Identities=56% Similarity=0.893 Sum_probs=182.8
Q ss_pred hcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHc
Q 022547 99 TQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK 178 (295)
Q Consensus 99 ~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~ 178 (295)
.+.+++|||++++.|++..|.+||+|+|++||+||||+|++.+++..++++|.+.+|+ +|+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHc
Confidence 4578999999999999888899999999999999999999999999999999877774 589999999999999999999
Q ss_pred CCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHHhh
Q 022547 179 GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDT 258 (295)
Q Consensus 179 Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql 258 (295)
|++|+||||++++..|+++|+.+||+|+.++++.+++++++.+++++++.++++++++|+|+.++..||.+++.||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997645789999999998876567899999999987779999999999999
Q ss_pred CCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 259 LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 259 ~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
++.+|+||+|+|+||+++|++.+|++.++++|||+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve 197 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVE 197 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEe
Confidence 7679999999999999999999999999999999985
No 10
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=9.3e-46 Score=348.63 Aligned_cols=201 Identities=45% Similarity=0.707 Sum_probs=179.4
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
.+.++.+.+++|||++++++++.+|++||+|+|++||+||||+|++.+++.+++++|.+.+| .+||++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHH
Confidence 35678889999999999999998899999999999999999999999999999999988777 45899999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCC------ChHHHHHHHHHHHHcC-CCeEEecCCCChHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK------GLRGALDKAEEIVLNT-PNAYMFQQFDNMANLKIH 246 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~------~~~~a~~~a~~~a~~~-~~~~~~~~~~n~~~~~~G 246 (295)
+|+.+|++|+||||..+++.|+++++.+||+|+.+++.. ..+.+.+.+.+++++. .+++|++||+|+.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999998631 1223344455554443 378899999999998779
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 247 FDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 247 y~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|.|++.||++|++..+|+||+|+|+||+++|++.+||+.+|++|||+|+
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Ve 210 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLAD 210 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEc
Confidence 9999999999997679999999999999999999999999999999985
No 11
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.1e-45 Score=343.45 Aligned_cols=195 Identities=55% Similarity=0.889 Sum_probs=178.4
Q ss_pred hcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHc
Q 022547 99 TQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK 178 (295)
Q Consensus 99 ~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~ 178 (295)
...+++|||+++++ ....|.+||+|+|++|||||||+|++.+++.+++++|.+.+| .+||++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 556788999999999999999999999999999999987776 4589999999999999999999
Q ss_pred CCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCC-eEEecCCCChHHHHHHHHHHHHHHHHh
Q 022547 179 GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEIWED 257 (295)
Q Consensus 179 Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~-~~~~~~~~n~~~~~~Gy~t~~~EI~~Q 257 (295)
|++|+||||+++++.|++.|+.+||+|+.++++.+++++++.+++++++.++ +++++||+|+.++..||.|++.||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999753456888889998887644 558999999998888999999999999
Q ss_pred hCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 258 TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 258 l~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
+++.+|+||+|+|+||+++|++.+|++.++++|||+|+
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve 197 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVE 197 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEe
Confidence 96679999999999999999999999999999999985
No 12
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-46 Score=347.08 Aligned_cols=194 Identities=25% Similarity=0.345 Sum_probs=180.7
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+++++...+.+|||++++.|++.+|++||+|+|++|++||||.|||++.+..+.+++... ..||++|+||||+++|+
T Consensus 15 A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~---~gViaaSaGNHaQGvA~ 91 (347)
T COG1171 15 AAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERA---AGVIAASAGNHAQGVAY 91 (347)
T ss_pred HHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhc---CceEEecCCcHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999875443222 34999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+++|++++||||.+++..|++.++.|||||++++. +|+++.+.|.++++++ |+.|+++|++++.+ +||+|++.|
T Consensus 92 aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGTi~lE 167 (347)
T COG1171 92 AAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGTIALE 167 (347)
T ss_pred HHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccHHHHH
Confidence 9999999999999999999999999999999999997 5999999999999986 99999999999987 499999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEe
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARIL 294 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV 294 (295)
|++|+...+|+||||+|+||+++|++.++|...|++|||||
T Consensus 168 ileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGV 208 (347)
T COG1171 168 ILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGV 208 (347)
T ss_pred HHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999555799999999999999999999999999999998
No 13
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-45 Score=346.62 Aligned_cols=194 Identities=22% Similarity=0.268 Sum_probs=180.5
Q ss_pred chhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHH
Q 022547 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (295)
Q Consensus 93 ~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA 172 (295)
.++.++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.++|.++.++|. ...||++|+||||+|+|
T Consensus 8 ~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~alA 83 (322)
T PRK07476 8 RARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRALA 83 (322)
T ss_pred HHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHHHH
Confidence 35678999999999999999998889999999999999999999999999999998886 23489999999999999
Q ss_pred HHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022547 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 173 ~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
++|+.+|++|+||||+++++.|++.|+.+||+|+.++. +++++++.+.+++++. +++|++||+|+.++. ||.|++.
T Consensus 84 ~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~t~~~ 159 (322)
T PRK07476 84 YAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRIIA-GQGTIGL 159 (322)
T ss_pred HHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcceee-chhHHHH
Confidence 99999999999999999999999999999999999986 5889999999988775 779999999999885 9999999
Q ss_pred HHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
||++|+. .+|+||+|+|+||+++|++.+||+.+|++|||+|+
T Consensus 160 Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe 201 (322)
T PRK07476 160 EILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVS 201 (322)
T ss_pred HHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999984 68999999999999999999999999999999985
No 14
>PLN02970 serine racemase
Probab=100.00 E-value=2.6e-45 Score=345.50 Aligned_cols=193 Identities=17% Similarity=0.228 Sum_probs=178.8
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+.+++...+++|||++++++++..|++||+|+|++||+||||||++.+++..+.+++. ...||++|+||||+|+|+
T Consensus 17 a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 92 (328)
T PLN02970 17 ARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAALAL 92 (328)
T ss_pred HHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHHHH
Confidence 3467889999999999999998888999999999999999999999999999876554 245899999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+.+++++ +++||++||+|+.++. ||.|+++|
T Consensus 93 ~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~-~g~~~~~~~~n~~~~~-g~~t~g~E 168 (328)
T PLN02970 93 AAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQE-TGAVLIHPYNDGRVIS-GQGTIALE 168 (328)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHh-cCCEEeCCCCCcchhh-ehHHHHHH
Confidence 9999999999999999999999999999999999996 588888899998877 5899999999999886 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+. .||+||+|+|+||+++|++++||+.+|++|||+|+
T Consensus 169 i~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Ve 209 (328)
T PLN02970 169 FLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAE 209 (328)
T ss_pred HHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999995 69999999999999999999999999999999984
No 15
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=6.4e-45 Score=350.47 Aligned_cols=199 Identities=37% Similarity=0.610 Sum_probs=173.9
Q ss_pred hhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHH
Q 022547 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (295)
Q Consensus 96 ~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa 175 (295)
..+...+++|||+++++|+...|++||+|+|++||+||||||+|.++|.+++++|.++++. +|+++|+||||+++|++|
T Consensus 45 ~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~~a 123 (423)
T PLN02356 45 NGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLATVA 123 (423)
T ss_pred hhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHHHHH
Confidence 3577789999999999999888999999999999999999999999999999999877764 478899999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCC-----CCh-HHHH---HHHHHHHHc-------------------
Q 022547 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE-----KGL-RGAL---DKAEEIVLN------------------- 227 (295)
Q Consensus 176 ~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~-----~~~-~~a~---~~a~~~a~~------------------- 227 (295)
+.+|++|+||||++++++|++.|+.+||+|+.+++. .++ ..+. +.+.+++++
T Consensus 124 a~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~ 203 (423)
T PLN02356 124 PAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCI 203 (423)
T ss_pred HHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 999999999999999999999999999999999641 122 1121 223343332
Q ss_pred -------------CCCeEEecCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEe
Q 022547 228 -------------TPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARIL 294 (295)
Q Consensus 228 -------------~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV 294 (295)
.++.||++||+|+.|+.+|+..+|+||++|+++.+|+||+|+||||+++|++++||+.+|++|||+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigV 283 (423)
T PLN02356 204 SEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLI 283 (423)
T ss_pred ccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 1477999999999998877777799999999778999999999999999999999999999999999
Q ss_pred C
Q 022547 295 L 295 (295)
Q Consensus 295 ~ 295 (295)
+
T Consensus 284 e 284 (423)
T PLN02356 284 D 284 (423)
T ss_pred e
Confidence 6
No 16
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=5.9e-45 Score=351.81 Aligned_cols=193 Identities=29% Similarity=0.411 Sum_probs=179.8
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+.+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++.++.+++. .+.||++|+||||+++|+
T Consensus 12 a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 87 (404)
T PRK08198 12 ARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVAY 87 (404)
T ss_pred HHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHHH
Confidence 4568899999999999999999889999999999999999999999999999875543 256999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||++++..|++.++.+||+|+.++. +++++++.+.+++++. +++|++||+|+.++. ||+|+|.|
T Consensus 88 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~~t~a~E 163 (404)
T PRK08198 88 AASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDVIA-GQGTIGLE 163 (404)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccHHH-HHHHHHHH
Confidence 9999999999999999999999999999999999985 5999999999998875 889999999999885 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+ +.+|+||+|+|+||+++|++.+||+.+|++|||||+
T Consensus 164 I~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe 204 (404)
T PRK08198 164 ILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQ 204 (404)
T ss_pred HHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99998 479999999999999999999999999999999985
No 17
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=2.5e-44 Score=333.12 Aligned_cols=192 Identities=51% Similarity=0.836 Sum_probs=176.9
Q ss_pred CCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeE
Q 022547 103 GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKL 182 (295)
Q Consensus 103 ~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~ 182 (295)
++|||+++++|++..|++||+|+|++||+||||+|++.+++..+.++|+++++ .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 68999999999988899999999999999999999999999999999987665 45899999999999999999999999
Q ss_pred EEEECCCCCHHHHHHHHhCCCEEEEeCCCC--ChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHHhhCC
Q 022547 183 IVTMPASTNLERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260 (295)
Q Consensus 183 ~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~--~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~ 260 (295)
+||||.++++.|+++++.+||+|+.++... +++++.+.+.+++++.++++|+++|+|+.+++.|+.|++.||++|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999752 348888899988887668899999999999984455999999999966
Q ss_pred CCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 261 ~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
.||+||+|+|+||+++|++.+|++.+|+++||+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve 194 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVD 194 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 89999999999999999999999999999999985
No 18
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.2e-44 Score=353.95 Aligned_cols=199 Identities=44% Similarity=0.703 Sum_probs=180.6
Q ss_pred hhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHH
Q 022547 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (295)
Q Consensus 96 ~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa 175 (295)
..+...+++|||+++++|+...|++||+|+|++||+||||+|+|.+++.+++++|.+.+| ++||++|+||||+|+|++|
T Consensus 3 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a 81 (454)
T TIGR01137 3 DNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVA 81 (454)
T ss_pred cchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHH
Confidence 456778999999999999988888999999999999999999999999999999998887 5699999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChH---HHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022547 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR---GALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 176 ~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~---~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
+.+|++|+||||+++++.|+..++.+||+|+.++....++ ..++.+.+++++.++.+|++||+|+.|+..||.|+|+
T Consensus 82 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 161 (454)
T TIGR01137 82 AIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGP 161 (454)
T ss_pred HHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHH
Confidence 9999999999999999999999999999999998642233 2356677777765567888999999998779999999
Q ss_pred HHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
||++|+++.+|+||+|+|||||++|++.++|+.+|++|||+|+
T Consensus 162 Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve 204 (454)
T TIGR01137 162 EILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGAD 204 (454)
T ss_pred HHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEe
Confidence 9999997689999999999999999999999999999999985
No 19
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=7.4e-45 Score=350.66 Aligned_cols=193 Identities=23% Similarity=0.325 Sum_probs=179.2
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+..++.+.+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+.+. ...||++|+||||+++|+
T Consensus 10 a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~avA~ 85 (403)
T PRK08526 10 AKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQGVAI 85 (403)
T ss_pred HHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHHHHH
Confidence 4568899999999999999999889999999999999999999999999998876543 245899999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||+.++..|++.++.|||+|++++. +|+++.+.+.+++++. +++|++||+|+.++ +||+|+|.|
T Consensus 86 aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~G~gtia~E 161 (403)
T PRK08526 86 SAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEVM-AGQGTIALE 161 (403)
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-hhhHHHHHH
Confidence 9999999999999999999999999999999999986 6999999999998875 78999999999876 599999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+ +.+|+||+|+|+||+++|++.++|+.+|++|||||.
T Consensus 162 I~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVe 202 (403)
T PRK08526 162 MLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVG 202 (403)
T ss_pred HHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99998 479999999999999999999999999999999984
No 20
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=2.1e-44 Score=337.87 Aligned_cols=193 Identities=21% Similarity=0.268 Sum_probs=177.3
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+..++.+.+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++..+.+... ...||++|+||||+|+|+
T Consensus 9 a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 84 (317)
T TIGR02991 9 AAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRALAY 84 (317)
T ss_pred HHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHHHH
Confidence 4568999999999999999998888999999999999999999999999998764322 135899999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||+.+++.|++.++.+||+|+.++. +++++.+.+.+++++. +++|++||+|+.++. ||+|+++|
T Consensus 85 ~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~t~a~E 160 (317)
T TIGR02991 85 AAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIVA-GQGTLGLE 160 (317)
T ss_pred HHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHHh-hHHHHHHH
Confidence 9999999999999999999999999999999999997 5889999999988775 789999999999885 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+ +.+|+||+|+|+||+++|++++||+.+|++|||+|+
T Consensus 161 i~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigve 201 (317)
T TIGR02991 161 VVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVS 201 (317)
T ss_pred HHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99998 468999999999999999999999999999999985
No 21
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.6e-44 Score=349.00 Aligned_cols=193 Identities=23% Similarity=0.341 Sum_probs=179.2
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+..++.+.+++|||++++.|++.+|++||+|+|++||+||||+|+|.+++..+.+.+. . ..||++|+||||+|+|+
T Consensus 15 a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~-~---~gvv~aSsGN~g~a~A~ 90 (406)
T PRK06382 15 AKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL-R---NGVITASAGNHAQGVAY 90 (406)
T ss_pred HHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc-C---CeEEEECCCHHHHHHHH
Confidence 4568999999999999999999899999999999999999999999999988876553 2 34899999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||+.++..|++.++.+||+|+.+++ +|+++.+.+.+++++. +++|++||+|+.++. ||+|++.|
T Consensus 91 aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i~-g~~t~~~E 166 (406)
T PRK06382 91 AASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVIS-GQGTIGLE 166 (406)
T ss_pred HHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHHH-HHHHHHHH
Confidence 9999999999999999999999999999999999986 5899999999998875 789999999999886 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+ +.+|+||+|+|+||+++|++.++|+.+|++|||||+
T Consensus 167 i~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe 207 (406)
T PRK06382 167 IMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIE 207 (406)
T ss_pred HHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99998 479999999999999999999999999999999984
No 22
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1.2e-44 Score=341.44 Aligned_cols=193 Identities=26% Similarity=0.377 Sum_probs=177.8
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
++.++.+.+++|||+++++|++..|++||+|+|++||+||||||++.+++..+.+... ...||++|+||||+|+|+
T Consensus 17 a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~alA~ 92 (333)
T PRK08638 17 AKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQGVAL 92 (333)
T ss_pred HHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHHHHH
Confidence 3468899999999999999998888999999999999999999999999998765332 135999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||+++++.|+++++.+||+|+.+++ +++++++.+++++++. +++|++||+|+.++. ||.|+++|
T Consensus 93 ~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~~-g~~t~a~E 168 (333)
T PRK08638 93 SCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKVIA-GQGTIGLE 168 (333)
T ss_pred HHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcchhc-cccHHHHH
Confidence 9999999999999999999999999999999999975 5899999999998885 779999999999885 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+ +++|+||+|+|+||+++|++.+||+.+|++|||+|+
T Consensus 169 i~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVe 209 (333)
T PRK08638 169 ILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQ 209 (333)
T ss_pred HHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999 579999999999999999999999999999999985
No 23
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=339.06 Aligned_cols=193 Identities=21% Similarity=0.268 Sum_probs=177.0
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+..++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++.++.+++...+ .||++|+||||+++|+
T Consensus 11 a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~---~vv~aSsGN~g~alA~ 87 (322)
T PRK06110 11 AAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVR---GVISATRGNHGQSVAF 87 (322)
T ss_pred HHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCc---eEEEECCCHHHHHHHH
Confidence 3457899999999999999998889999999999999999999999999999998775443 3899999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+++|++|+||||.++++.|+++++.+||+|+.+++ +++++++.+.++++++ ++||+++| |+.++. ||.|++.|
T Consensus 88 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~~-G~~t~~~E 162 (322)
T PRK06110 88 AARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDLVR-GVATYALE 162 (322)
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChHHh-ccchHHHH
Confidence 9999999999999999999999999999999999975 6899999999988875 78999999 556664 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|++ .+|+||+|+|+||+++|++.++|+.+|++|||+|+
T Consensus 163 i~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Ve 203 (322)
T PRK06110 163 LFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVV 203 (322)
T ss_pred HHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999984 78999999999999999999999999999999985
No 24
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.5e-44 Score=345.91 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=172.7
Q ss_pred cCCCCceeccccccCCC--------CeEEEEeCCCCC-CCchHHHHHHHHHHH-----HHHcCCCCCCC-----------
Q 022547 102 IGRTPMVYLNKVTEGCV--------GNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGK----------- 156 (295)
Q Consensus 102 ~~~TPLv~l~~l~~~~g--------~~I~~K~E~~np-tGS~K~R~a~~~l~~-----a~~~g~~~~g~----------- 156 (295)
+++|||+++++|++.+| .+||+|+|++|| |||||||++.++|.. +++.|.++||.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 89999999999987654 799999999999 999999999999874 77889888775
Q ss_pred -----eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCe
Q 022547 157 -----TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231 (295)
Q Consensus 157 -----~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~ 231 (295)
..||++|+||||+++|++|+.+|++|+||||++++..|++.|+.+||+|+.++. +++++++.+.+++++.++.
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 379999999999999999999999999999999999999999999999999986 6999999999999886678
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHHhhCC---C-----CCEEEEcCCchHHHHHHHHHHHhc-CCCCEEEEeC
Q 022547 232 YMFQQFDNMANLKIHFDSTGPEIWEDTLG---C-----VDIFVAAIGTGGTITGTGRFLKMM-NKEIKARILL 295 (295)
Q Consensus 232 ~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~---~-----~d~vv~pvGtGgt~aGi~~~lk~~-~~~vkVigV~ 295 (295)
||+++++++..+ +||+|+|+||++|+++ . ||+||+|+|+||+++|++++||+. .|+++||+|+
T Consensus 208 ~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVe 279 (404)
T cd06447 208 YFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAE 279 (404)
T ss_pred EeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 899997666554 6999999999999852 3 458999999999999999999997 7899999996
No 25
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.3e-44 Score=355.63 Aligned_cols=191 Identities=24% Similarity=0.317 Sum_probs=177.5
Q ss_pred hhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~ 176 (295)
++...+.+|||+++++|++.+|++||+|+|++||+||||+|+|.++|..+.+... . ..||++|+||||+++|++|+
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~-~---~GVV~aSaGNha~gvA~aA~ 105 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL-A---RGVITASAGNHAQGVALAAA 105 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh-c---CcEEEECCCHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999987764322 1 33899999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHH
Q 022547 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (295)
Q Consensus 177 ~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~ 256 (295)
.+|++|+||||..++..|++.++.+||+|+.+++ +|+++.+.|.+++++. +++|++||+|+.++. ||+|+|.||++
T Consensus 106 ~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~via-GqgTig~EI~e 181 (521)
T PRK12483 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDVIA-GQGTVAMEILR 181 (521)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999986 6999999999998885 789999999999986 99999999999
Q ss_pred hhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 257 Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|+++.+|+||+|+|+||+++|++.++|+.+|++|||||.
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVe 220 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVE 220 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 996579999999999999999999999999999999984
No 26
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=3.3e-44 Score=336.89 Aligned_cols=193 Identities=17% Similarity=0.239 Sum_probs=177.4
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
++.++...+++|||++++++++..|++||+|+|++||+||||||++.+++.++.+++. ...||++|+||||+|+|+
T Consensus 14 a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 89 (321)
T PRK07048 14 AAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQAIAL 89 (321)
T ss_pred HHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHHHHH
Confidence 4568999999999999999988888999999999999999999999999998875432 245899999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+.+++++. +++|++||+|+.++. ||+|+++|
T Consensus 90 ~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~~-g~~t~~~E 165 (321)
T PRK07048 90 SARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHVIA-GQGTAAKE 165 (321)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcchhh-ccchHHHH
Confidence 9999999999999999999999999999999999996 4788888888888875 789999999998875 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|++ .+|+||+|+|+||+++|++.++|+.+++++||+|+
T Consensus 166 I~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigve 206 (321)
T PRK07048 166 LFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVE 206 (321)
T ss_pred HHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999984 79999999999999999999999999999999985
No 27
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=5.6e-44 Score=337.58 Aligned_cols=193 Identities=22% Similarity=0.236 Sum_probs=177.9
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
++.++.+.+++|||+++++|++.+|++||+|+|++||+||||+|++.+++.+++++|.+. ++||++|+||||+++|+
T Consensus 13 A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~alA~ 89 (338)
T PRK06608 13 AHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQAVAY 89 (338)
T ss_pred HHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHHHHH
Confidence 456789999999999999999989999999999999999999999999999999998753 35899999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||+.+++.|++.++.+||+|+.++. ++++.+.+.+ +++ +++||++||+|+.++. ||+|++.|
T Consensus 90 ~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~-g~~t~a~E 163 (338)
T PRK06608 90 ASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTIA-GAGTLCYE 163 (338)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHhc-cHHHHHHH
Confidence 9999999999999999999999999999999999974 4777777777 544 5889999999999985 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|++..+|+||+|+|+||+++|++.++|+.+++++||+|+
T Consensus 164 i~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVe 205 (338)
T PRK06608 164 ALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSE 205 (338)
T ss_pred HHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999997689999999999999999999999999999999985
No 28
>PLN02550 threonine dehydratase
Probab=100.00 E-value=2.2e-43 Score=351.23 Aligned_cols=191 Identities=22% Similarity=0.314 Sum_probs=176.4
Q ss_pred hhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~ 176 (295)
++...+.+|||+++++|++.+|++||+|+|++||+||||+|+|.+.|..+.+.. ..+ .||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~~~---GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-LDK---GVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-CCC---CEEEECCCHHHHHHHHHHH
Confidence 556889999999999999999999999999999999999999999999885442 233 3899999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHH
Q 022547 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (295)
Q Consensus 177 ~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~ 256 (295)
++|++|+||||.+++..|++.++.+||+|++++. +|+++.+.|.+++++. +++|+++|+|+.++. ||+|+|.||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~via-GqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDVIA-GQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999986 5999999999998874 778999999999885 99999999999
Q ss_pred hhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 257 Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|+...+|+||+|+|+||+++|++.++|+.+|++|||||.
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVE 292 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVE 292 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 996569999999999999999999999999999999984
No 29
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=6.5e-44 Score=331.51 Aligned_cols=194 Identities=24% Similarity=0.328 Sum_probs=179.6
Q ss_pred chhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHH
Q 022547 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (295)
Q Consensus 93 ~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA 172 (295)
.++..+.+.+++|||+++++|++.+|++||+|+|++||+||||||++.+++.++++.|. ...||++|+||||+|+|
T Consensus 6 ~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~alA 81 (304)
T cd01562 6 AAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQGVA 81 (304)
T ss_pred HHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHHHHH
Confidence 34568899999999999999998889999999999999999999999999999987762 13589999999999999
Q ss_pred HHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022547 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 173 ~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
++|+.+|++|++|||.+++..|+++|+.+||+|+.+++ +++++++.+.+++++. +++|++||+|+.++. ||.++++
T Consensus 82 ~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~~~-g~~~~~~ 157 (304)
T cd01562 82 YAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDVIA-GQGTIGL 157 (304)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchhc-cHHHHHH
Confidence 99999999999999999999999999999999999997 4899999999998885 789999999998875 9999999
Q ss_pred HHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
||++|++ .+|+||+|+|+|||++|++.+||+.++++|||+|+
T Consensus 158 Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~ 199 (304)
T cd01562 158 EILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVE 199 (304)
T ss_pred HHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999996 49999999999999999999999999999999985
No 30
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=7.7e-44 Score=338.29 Aligned_cols=191 Identities=22% Similarity=0.267 Sum_probs=174.9
Q ss_pred hhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHH
Q 022547 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (295)
Q Consensus 95 ~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~a 174 (295)
.++++.++|+|||+++++|+..+|++||+|+|++||+||||||++.+++.++.++|. .+||++|+||||+|+|++
T Consensus 19 ~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~ 93 (351)
T PRK06352 19 TPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAY 93 (351)
T ss_pred cCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 346889999999999999998888999999999999999999999999999999886 569999999999999999
Q ss_pred HHHcCCeEEEEECCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 175 AAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 175 a~~~Gi~~~ivvp~~-~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
|+.+|++|+||||++ .+..|+.+|+.+||+|+.+++ +++++.+.+.+++++. ++++++ +.|+.+++ ||.|+++|
T Consensus 94 aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~-G~~t~~~E 168 (351)
T PRK06352 94 ATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYRLE-GQKTAAFE 168 (351)
T ss_pred HHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCcccee-eHHHHHHH
Confidence 999999999999997 589999999999999999986 5899999999988774 666665 56888886 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCC-----CEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE-----IKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~-----vkVigV~ 295 (295)
|++|++..||+||+|+|+||+++|++++||+++++ +|||+|+
T Consensus 169 I~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Ve 215 (351)
T PRK06352 169 ICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFE 215 (351)
T ss_pred HHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 99999768999999999999999999999998877 8999985
No 31
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.3e-43 Score=339.99 Aligned_cols=182 Identities=26% Similarity=0.360 Sum_probs=171.4
Q ss_pred CCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEE
Q 022547 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV 184 (295)
Q Consensus 105 TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~i 184 (295)
|||+++++|++..|++||+|+|++|||||||+|+|.+++.++.+++.. ..||++|+||||+++|++|+.+|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 999999999998899999999999999999999999999999888763 3599999999999999999999999999
Q ss_pred EECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHHhhCCCCCE
Q 022547 185 TMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI 264 (295)
Q Consensus 185 vvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~ 264 (295)
|||+.++..|++.++.+||+|+.++. +++++.+.|.+++++. +++|++||+|+.++. ||+|+|.||++|+ +.+|+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~~t~~~Ei~~q~-~~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFVMA-GQGTIGLEIMEDI-PDVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhhhh-hhHHHHHHHHHhC-CCCCE
Confidence 99999999999999999999999985 5999999999998874 789999999999875 9999999999998 47999
Q ss_pred EEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 265 FVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 265 vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
||+|+|+||+++|++.++|+.+|++|||||.
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe 182 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVE 182 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999999999999999999999999984
No 32
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=2.7e-43 Score=330.24 Aligned_cols=188 Identities=23% Similarity=0.317 Sum_probs=173.2
Q ss_pred hcccCCCCceeccccccCCC-CeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHH
Q 022547 99 TQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV 177 (295)
Q Consensus 99 ~~~~~~TPLv~l~~l~~~~g-~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~ 177 (295)
...+++|||+++++|++.+| .+||+|+|++||+||||+|++.+++.+++++|. ++||++|+||||+|+|++|+.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHH
Confidence 45699999999999998888 599999999999999999999999999999986 568999999999999999999
Q ss_pred cCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCC-Ch-HHHHHHHHHHHHHHH
Q 022547 178 KGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD-NM-ANLKIHFDSTGPEIW 255 (295)
Q Consensus 178 ~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~-n~-~~~~~Gy~t~~~EI~ 255 (295)
+|++|+||||..++..|+++|+.+||+|+.+++ +++++++.+.+++++ +++|++++++ |+ .++. ||.|+++||+
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~-~~~~~~~~~~~n~~~~~~-G~~t~a~Ei~ 160 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKE-NGIYDANPGSVNSVVDIE-AYSAIAYEIY 160 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHH-cCcEecCCCCCCcchHhh-hHHHHHHHHH
Confidence 999999999999999999999999999999997 488999999998877 4788888886 66 4665 9999999999
Q ss_pred HhhCCCCCEEEEcCCchHHHHHHHHHHHhc------CCCCEEEEeC
Q 022547 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMM------NKEIKARILL 295 (295)
Q Consensus 256 ~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~------~~~vkVigV~ 295 (295)
+|++..||+||+|+|+||+++|++.+|++. ++.++||+|.
T Consensus 161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe 206 (319)
T PRK06381 161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVS 206 (319)
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEe
Confidence 999767999999999999999999999998 7899999984
No 33
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-43 Score=342.26 Aligned_cols=193 Identities=24% Similarity=0.289 Sum_probs=177.9
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+.+++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+.+. ...||++|+||||+|+|+
T Consensus 13 a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 88 (403)
T PRK07334 13 AAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGVAY 88 (403)
T ss_pred HHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHHHH
Confidence 4568999999999999999998889999999999999999999999999998764432 134899999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||..+++.|+++++.+||+|+.+++ +++++++.+.+++++. ++||++||+|+.++. ||.|++.|
T Consensus 89 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~-g~~t~~~E 164 (403)
T PRK07334 89 HAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAVIA-GQGTVALE 164 (403)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHHHH-hHHHHHHH
Confidence 9999999999999999999999999999999999975 5899999999998874 889999999999885 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+ +.+|+||+|+|+||+++|++.+||+.+|++|||+|+
T Consensus 165 i~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve 205 (403)
T PRK07334 165 MLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQ 205 (403)
T ss_pred HHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99998 579999999999999999999999999999999985
No 34
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.7e-43 Score=331.51 Aligned_cols=188 Identities=24% Similarity=0.260 Sum_probs=172.0
Q ss_pred CCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEE
Q 022547 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLI 183 (295)
Q Consensus 104 ~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ 183 (295)
+|||++++++++..|++||+|+|++||+||||+|++.+++.+++++|. .++ +.||++|+||||+|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999998888999999999999999999999999999999884 222 569999999999999999999999999
Q ss_pred EEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHHhhCC--C
Q 022547 184 VTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--C 261 (295)
Q Consensus 184 ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~--~ 261 (295)
||||..+++.|++.|+.+||+|+.+++. .++++.+.+.+++++.+++||+++|+|+.++. ||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLIWE-GHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchhhc-cccHHHHHHHHHccccCC
Confidence 9999999999999999999999999864 26777777888877755889999999999986 899999999999975 5
Q ss_pred CCEEEEcCCchHHHHHHHHHHHhcC-CCCEEEEeC
Q 022547 262 VDIFVAAIGTGGTITGTGRFLKMMN-KEIKARILL 295 (295)
Q Consensus 262 ~d~vv~pvGtGgt~aGi~~~lk~~~-~~vkVigV~ 295 (295)
+|+||+|+|+||+++|++.+||+.+ ++++||+|+
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Ve 191 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVE 191 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 9999999999999999999999996 999999985
No 35
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=9.8e-44 Score=344.90 Aligned_cols=194 Identities=24% Similarity=0.332 Sum_probs=174.9
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+++++.+.+++|||+++++|++..|++||+|+|++||+||||+|+|.+++..+.+.. . ...||++|+||||+++|+
T Consensus 15 a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~-~---~~~Vv~aSsGN~g~alA~ 90 (420)
T PRK08639 15 AAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEE-L---AAGVVCASAGNHAQGVAY 90 (420)
T ss_pred HHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHh-h---CCEEEEECccHHHHHHHH
Confidence 456889999999999999999888999999999999999999999999998853321 1 245999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEE---EEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEI---ILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~V---v~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~ 250 (295)
+|+.+|++|+||||+.++..|++.++.+||+| +.++ .+++++++.+.+++++. +++|++||+|+.++. ||+|+
T Consensus 91 ~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g--~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~~-G~~ti 166 (420)
T PRK08639 91 ACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVG--DTFDDSAAAAQEYAEET-GATFIPPFDDPDVIA-GQGTV 166 (420)
T ss_pred HHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeC--cCHHHHHHHHHHHHHhc-CCcccCCCCChhHhc-chhHH
Confidence 99999999999999999999999999999974 3333 36999999999998885 789999999999885 99999
Q ss_pred HHHHHHhhCCC--CCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 251 GPEIWEDTLGC--VDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 251 ~~EI~~Ql~~~--~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|.||++|+... +|+||+|+|+||+++|++.++|+.+|++|||||+
T Consensus 167 g~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVe 213 (420)
T PRK08639 167 AVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVE 213 (420)
T ss_pred HHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999655 9999999999999999999999999999999984
No 36
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.6e-43 Score=342.28 Aligned_cols=194 Identities=23% Similarity=0.325 Sum_probs=175.1
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+..++...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+.. .. ..||++|+||||+++|+
T Consensus 6 a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~-~~---~gvv~aSsGN~g~a~A~ 81 (409)
T TIGR02079 6 ARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQ-LA---KGVVCASAGNHAQGFAY 81 (409)
T ss_pred HHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHh-hC---CEEEEECccHHHHHHHH
Confidence 456889999999999999999988999999999999999999999999998753322 22 34999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEE---EEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEI---ILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~V---v~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~ 250 (295)
+|+.+|++|+||||+.++..|++.++.+||+| +.++. +|+++++.+.+++++. +++|++||+|+.++. ||+|+
T Consensus 82 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~~ti 157 (409)
T TIGR02079 82 ACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGD--TFDQCAAAAREHVEDH-GGTFIPPFDDPRIIE-GQGTV 157 (409)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCHhHhh-hhHHH
Confidence 99999999999999999999999999999974 44443 6999999999998875 789999999999885 99999
Q ss_pred HHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 251 GPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 251 ~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
+.||++|+...+|+||+|+|+||+++|++.++|+.+|++|||||+
T Consensus 158 ~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVe 202 (409)
T TIGR02079 158 AAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVE 202 (409)
T ss_pred HHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999996579999999999999999999999999999999984
No 37
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=2.8e-43 Score=347.41 Aligned_cols=191 Identities=24% Similarity=0.329 Sum_probs=176.9
Q ss_pred hhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~ 176 (295)
++.+.+++|||+++++|++.+|.+||+|+|++||+||||+|+|.+++..+.+... ...||++|+||||+++|++|+
T Consensus 10 ~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa~ 85 (499)
T TIGR01124 10 RVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSAA 85 (499)
T ss_pred HhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999999999998743322 145999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHH
Q 022547 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (295)
Q Consensus 177 ~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~ 256 (295)
++|++|+||||.+++..|++.++.+||+|+.++. +|+++.+.|.+++++. +++|++||+|+.++. ||+|+|.||++
T Consensus 86 ~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i~-G~gtig~EI~~ 161 (499)
T TIGR01124 86 RLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLVIA-GQGTLALEILR 161 (499)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHHH-hhHHHHHHHHH
Confidence 9999999999999999999999999999999985 5899999999998885 789999999999885 99999999999
Q ss_pred hhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 257 Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|+...+|+||+|+||||+++|++.++|+.+|++|||||.
T Consensus 162 q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVe 200 (499)
T TIGR01124 162 QVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVE 200 (499)
T ss_pred hCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 996579999999999999999999999999999999984
No 38
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=2.8e-43 Score=342.25 Aligned_cols=194 Identities=22% Similarity=0.284 Sum_probs=174.0
Q ss_pred hcccCCCCceeccccccCCC--------CeEEEEeCCCCC-CCchHHHHHHHHHHH-----HHHcCCCCCCC--------
Q 022547 99 TQLIGRTPMVYLNKVTEGCV--------GNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGK-------- 156 (295)
Q Consensus 99 ~~~~~~TPLv~l~~l~~~~g--------~~I~~K~E~~np-tGS~K~R~a~~~l~~-----a~~~g~~~~g~-------- 156 (295)
+.++++|||++++.+++.+| .+||+|+|++|| |||||+|++.++|.. +++.|.+.++.
T Consensus 70 ~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~ 149 (441)
T PRK02991 70 TGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASP 149 (441)
T ss_pred cCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcch
Confidence 44589999999999987665 699999999999 999999999999875 45778776653
Q ss_pred --------eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcC
Q 022547 157 --------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNT 228 (295)
Q Consensus 157 --------~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~ 228 (295)
..||++|+||||+++|++|+.+|++|+||||+++++.|++.|+.+||+|+.+++ +|+++.+.+++++++.
T Consensus 150 ~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~ 227 (441)
T PRK02991 150 EFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESD 227 (441)
T ss_pred hhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc
Confidence 369999999999999999999999999999999999999999999999999996 5999999999998876
Q ss_pred CCeEEecCCCChHHHHHHHHHHHHHHHHhhCC--------CCCEEEEcCCchHHHHHHHHHHHhc-CCCCEEEEeC
Q 022547 229 PNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--------CVDIFVAAIGTGGTITGTGRFLKMM-NKEIKARILL 295 (295)
Q Consensus 229 ~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~--------~~d~vv~pvGtGgt~aGi~~~lk~~-~~~vkVigV~ 295 (295)
++.||+++++++..+ .||+|+++||++|+.+ .||+||+|+|+||+++|++.+||+. .+++|||+|+
T Consensus 228 ~~~~~~~~~~~~~~i-aG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVE 302 (441)
T PRK02991 228 PNCYFIDDENSRTLF-LGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAE 302 (441)
T ss_pred CCeEeCCCCCchhHH-HhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 678999999887776 5999999999999852 2679999999999999999999997 7899999985
No 39
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2.5e-43 Score=341.42 Aligned_cols=192 Identities=21% Similarity=0.273 Sum_probs=173.3
Q ss_pred ccCCCCceeccccccCC--------CCeEEEEeCCCCC-CCchHHHHHHHHHHH-----HHHcCCCCCCC----------
Q 022547 101 LIGRTPMVYLNKVTEGC--------VGNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGK---------- 156 (295)
Q Consensus 101 ~~~~TPLv~l~~l~~~~--------g~~I~~K~E~~np-tGS~K~R~a~~~l~~-----a~~~g~~~~g~---------- 156 (295)
++++|||++++++++.+ +.+||+|+|++|| +||||+|++.++|.. +++.|.+++++
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 89999999999998743 5799999999999 999999999999875 67888877764
Q ss_pred ------eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCC
Q 022547 157 ------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN 230 (295)
Q Consensus 157 ------~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~ 230 (295)
.+||++|+||||+++|++|+.+|++|+||||++++..|++.++.+||+|+.+++ +|+++++.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999997 699999999999988767
Q ss_pred eEEecCCCChHHHHHHHHHHHHHHHHhhCC--------CCCEEEEcCCchHHHHHHHHHHHhc-CCCCEEEEeC
Q 022547 231 AYMFQQFDNMANLKIHFDSTGPEIWEDTLG--------CVDIFVAAIGTGGTITGTGRFLKMM-NKEIKARILL 295 (295)
Q Consensus 231 ~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~--------~~d~vv~pvGtGgt~aGi~~~lk~~-~~~vkVigV~ 295 (295)
.|++++ .|+.++.+||+|+|.||++|+++ .||+|++|+|+||+++|++.+||+. ++++|||+|.
T Consensus 225 ~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VE 297 (431)
T TIGR02035 225 CYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAE 297 (431)
T ss_pred eEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 788887 45556667999999999999952 4779999999999999999999997 8999999984
No 40
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-43 Score=330.62 Aligned_cols=194 Identities=20% Similarity=0.234 Sum_probs=176.6
Q ss_pred chhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHH
Q 022547 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (295)
Q Consensus 93 ~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA 172 (295)
.+++++.+.+++|||+++++|++..|++||+|+|++||+||||||++.+++..+.++.. ...||++|+||||+|+|
T Consensus 9 ~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~alA 84 (317)
T PRK06815 9 EAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQGVA 84 (317)
T ss_pred HHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHHHH
Confidence 35678899999999999999998889999999999999999999999999987543321 23489999999999999
Q ss_pred HHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022547 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 173 ~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
++|+.+|++|+||||+.+++.|+..++.+||+|+.++. +++++...+.+++++. +.+|+++|+|+.++. ||+|+++
T Consensus 85 ~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~~t~a~ 160 (317)
T PRK06815 85 LAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQVIA-GQGTIGM 160 (317)
T ss_pred HHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhhhc-chhHHHH
Confidence 99999999999999999999999999999999999997 4888888898888774 788999999998875 9999999
Q ss_pred HHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
||++|++ .+|+||+|+|+||+++|++.+||+.+++++||||+
T Consensus 161 Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVe 202 (317)
T PRK06815 161 ELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCW 202 (317)
T ss_pred HHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999995 69999999999999999999999999999999985
No 41
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-43 Score=328.93 Aligned_cols=197 Identities=21% Similarity=0.213 Sum_probs=183.9
Q ss_pred ccchhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHH
Q 022547 91 GVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLG 170 (295)
Q Consensus 91 ~~~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~A 170 (295)
.......+.+.+..|||.+.-.|++.+|.++|+|+|++||+||||.||+.+++....++++ ...|+++|+||||.|
T Consensus 53 ~~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a 128 (457)
T KOG1250|consen 53 ISSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQA 128 (457)
T ss_pred hhhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHH
Confidence 3445668999999999999989999999999999999999999999999999998877764 245999999999999
Q ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHH
Q 022547 171 IAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (295)
Q Consensus 171 lA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~ 250 (295)
+|++|+++|++++||||..++..|++.++.+||+|++.+. +|++|.+.|.++++++ ++.|+++||+|+.|. |++|+
T Consensus 129 ~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I~a-GqgTi 204 (457)
T KOG1250|consen 129 AAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDIWA-GQGTI 204 (457)
T ss_pred HHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchhhc-CcchH
Confidence 9999999999999999999999999999999999999986 6999999999999996 999999999999996 99999
Q ss_pred HHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 251 GPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 251 ~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
+.||.+|+...++.|+||||+||+++||+.++|+..|+++||||.
T Consensus 205 g~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVE 249 (457)
T KOG1250|consen 205 GLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVE 249 (457)
T ss_pred HHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEe
Confidence 999999996666799999999999999999999999999999983
No 42
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=3.8e-43 Score=329.76 Aligned_cols=190 Identities=26% Similarity=0.254 Sum_probs=176.2
Q ss_pred hhhhcccCCCCceeccccccCCC-CeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHH
Q 022547 96 EDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (295)
Q Consensus 96 ~~i~~~~~~TPLv~l~~l~~~~g-~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~a 174 (295)
+++..++++|||+++++|++..| .+||+|+|++||+||||+|++.+++.+++++|. ++||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 46888999999999999998776 799999999999999999999999999999884 569999999999999999
Q ss_pred HHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHH
Q 022547 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (295)
Q Consensus 175 a~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI 254 (295)
|+.+|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+.++++++ .+|++||+|+.++. ||.|++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~~~-g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYRLE-GQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcceec-chhhhHHHH
Confidence 999999999999999999999999999999999987 5889999999998874 78899999999986 999999999
Q ss_pred HHhhCC-CCCEEEEcCCchHHHHHHHHHHHhcC------CCCEEEEeC
Q 022547 255 WEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN------KEIKARILL 295 (295)
Q Consensus 255 ~~Ql~~-~~d~vv~pvGtGgt~aGi~~~lk~~~------~~vkVigV~ 295 (295)
++|+++ .+|+||+|+|+||+++|++.++|+.. ++++||+|+
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve 211 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQ 211 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEe
Confidence 999964 69999999999999999999999875 589999985
No 43
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=6.6e-43 Score=345.68 Aligned_cols=191 Identities=25% Similarity=0.330 Sum_probs=177.0
Q ss_pred hhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~ 176 (295)
++...+.+|||+++++|++.+|.+||+|+|++||+||||+|+|.+++..+.+... ...||++|+||||+++|++|+
T Consensus 13 ~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa~ 88 (504)
T PRK09224 13 RVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSAA 88 (504)
T ss_pred HhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999999999998753321 245999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHH
Q 022547 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (295)
Q Consensus 177 ~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~ 256 (295)
.+|++|+||||.+++..|++.++.+||+|+.++. +|+++.+.|.+++++ ++++|+++|+|+.++. |++|+|.||++
T Consensus 89 ~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~-~g~~~v~~f~~~~~i~-G~gTi~~EI~~ 164 (504)
T PRK09224 89 RLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEE-EGLTFIHPFDDPDVIA-GQGTIAMEILQ 164 (504)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHh-cCCEEeCCCCCcHHHH-hHHHHHHHHHH
Confidence 9999999999999999999999999999999985 699999999999887 4889999999999885 99999999999
Q ss_pred hhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 257 Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++..+|+||+|+||||+++|++.++|..+|++|||||.
T Consensus 165 q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe 203 (504)
T PRK09224 165 QHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVE 203 (504)
T ss_pred hccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 996569999999999999999999999999999999984
No 44
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=8.9e-43 Score=325.92 Aligned_cols=187 Identities=27% Similarity=0.370 Sum_probs=171.2
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
+++++...+++|||++++.++.. |.+||+|+|++|||||||+|++.+++..+.+ + .+.||++|+||||+|+|+
T Consensus 13 a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~a~A~ 85 (310)
T PRK08246 13 AAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGLAVAY 85 (310)
T ss_pred HHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHHHHHH
Confidence 45789999999999999998876 7899999999999999999999999988765 2 246999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+.+|++|+||||+.+++.|+.+++.+||+|+.++. +++++++.+.+++++. ++||++||+|+.++. ||+|+++|
T Consensus 86 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i~-g~~t~~~E 161 (310)
T PRK08246 86 AAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEVLA-GAGTLGLE 161 (310)
T ss_pred HHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhhhc-chHHHHHH
Confidence 9999999999999999999999999999999999986 5889999999888775 889999999999886 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|++|+ +.||+||+|+|+||+++|++.+|+. ++|||+|+
T Consensus 162 i~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve 199 (310)
T PRK08246 162 IEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVE 199 (310)
T ss_pred HHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEe
Confidence 99998 5799999999999999999999974 48999984
No 45
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=8.6e-43 Score=331.34 Aligned_cols=191 Identities=25% Similarity=0.243 Sum_probs=173.6
Q ss_pred hhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHH
Q 022547 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (295)
Q Consensus 95 ~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~a 174 (295)
.+++..++|+|||++++.|+...|++||+|+|++||+||||||++.+++..++++|. ..||++|+||||+++|++
T Consensus 22 ~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~ 96 (353)
T PRK07409 22 TPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAY 96 (353)
T ss_pred cCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 356889999999999999988888999999999999999999999999999999886 469999999999999999
Q ss_pred HHHcCCeEEEEECCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 175 AAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 175 a~~~Gi~~~ivvp~~-~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
|+.+|++|+||||+. ++..|++.|+.+||+|+.+++ +++++.+.+++++++. +++++++ .|+.++. ||.|+++|
T Consensus 97 a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~~~-g~~t~~~E 171 (353)
T PRK07409 97 AARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYRIE-GQKTAAFE 171 (353)
T ss_pred HHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchhhh-hHHHHHHH
Confidence 999999999999997 689999999999999999996 5899999999988775 4677765 5888886 99999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCC------CCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK------EIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~------~vkVigV~ 295 (295)
|++|+++.+|+||+|+|+||+++|++.+|++..+ .+|||+|+
T Consensus 172 I~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVe 219 (353)
T PRK07409 172 IVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQ 219 (353)
T ss_pred HHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEe
Confidence 9999976899999999999999999999998643 48999984
No 46
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.2e-42 Score=334.90 Aligned_cols=190 Identities=23% Similarity=0.198 Sum_probs=176.8
Q ss_pred hhhcccCCCCceeccccccCCCC-eEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~-~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa 175 (295)
.+..+.|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.++.++|. ..||++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 58899999999999999988884 99999999999999999999999999999886 5699999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHH
Q 022547 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (295)
Q Consensus 176 ~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~ 255 (295)
+.+|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+.+++++. ++|+++++.|+.+++ |+.|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~ie-G~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYRIE-GKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccchh-cHHHHHHHHH
Confidence 99999999999999999999999999999999986 5888988898888774 789999999999986 9999999999
Q ss_pred HhhCC-CCCEEEEcCCchHHHHHHHHHHHhc-------CCCCEEEEeC
Q 022547 256 EDTLG-CVDIFVAAIGTGGTITGTGRFLKMM-------NKEIKARILL 295 (295)
Q Consensus 256 ~Ql~~-~~d~vv~pvGtGgt~aGi~~~lk~~-------~~~vkVigV~ 295 (295)
+|+++ .||+||+|+|+||+++|++++|+++ ++.+|||+|.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq 270 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQ 270 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEE
Confidence 99975 4999999999999999999999987 3789999984
No 47
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=5.1e-42 Score=324.47 Aligned_cols=184 Identities=21% Similarity=0.286 Sum_probs=169.6
Q ss_pred chhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHH
Q 022547 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (295)
Q Consensus 93 ~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA 172 (295)
.+..++...+.+|||++++.+ .||+|+|++|||||||+|++.+++..+.+.+.. +.||++|+||||.|+|
T Consensus 28 ~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~alA 97 (349)
T PRK08813 28 AAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE----RPVICASAGNHAQGVA 97 (349)
T ss_pred HHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHHHH
Confidence 345789999999999998765 399999999999999999999999999998863 3489999999999999
Q ss_pred HHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022547 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 173 ~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
++|+.+|++|+||||.+++..|++.++.|||+|+.++. +|+++.+.+.+++++. +++|+++|+|+.++. ||+|+|+
T Consensus 98 ~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~i~-G~~Tig~ 173 (349)
T PRK08813 98 WSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDVIA-GQGTVGI 173 (349)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999976 6999999999999885 889999999999986 9999999
Q ss_pred HHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
||++|. ||+||+|+|+||+++|++.+||+ +++|||||.
T Consensus 174 EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVq 211 (349)
T PRK08813 174 ELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQ 211 (349)
T ss_pred HHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEE
Confidence 999983 79999999999999999999996 579999984
No 48
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.5e-41 Score=306.50 Aligned_cols=186 Identities=37% Similarity=0.520 Sum_probs=174.4
Q ss_pred CCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEE
Q 022547 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV 184 (295)
Q Consensus 105 TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~i 184 (295)
|||++++++++..+.+||+|+|++||+||||||++.+++..+.++|.+ ++ ..||++|+||||+|+|++|+.+|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999987788999999999999999999999999999999865 33 5699999999999999999999999999
Q ss_pred EECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHHhhCC-CCC
Q 022547 185 TMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG-CVD 263 (295)
Q Consensus 185 vvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~-~~d 263 (295)
|+|...+..++++|+.+||+|+.+++. ++++.+.+++++++.+++||+++|+|+.+++ ||.++++||.+|+.. .+|
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~-g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANIA-GQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHHH-HHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999974 8999999999998866899999999999997 888999999999976 699
Q ss_pred EEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 264 IFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 264 ~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
+||+|+|+||+++|++.+|++.+|.+|||+|+
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~ 187 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVE 187 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99999999999999999999999999999985
No 49
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=3.7e-42 Score=333.90 Aligned_cols=191 Identities=21% Similarity=0.166 Sum_probs=177.4
Q ss_pred hhhcccCCCCceeccccccCCCC-eEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~-~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa 175 (295)
.+.++.|+|||+++++|++.+|. +||+|+|++|||||||||++.+++..|.+.|. ..|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 47889999999999999998885 99999999999999999999999999999986 5689999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHH
Q 022547 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (295)
Q Consensus 176 ~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~ 255 (295)
+++|++|+||||++++..|+.+++.+||+|+.+++ +|+++.+.+.+++++.+++++++++.|+..++ |++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ie-G~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYYAE-GSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccccc-chHHHHHHHH
Confidence 99999999999999999999999999999999997 58999999999888765788999888888876 9999999999
Q ss_pred HhhCCC-CCEEEEcCCchHHHHHHHHHHHhc-------CCCCEEEEeC
Q 022547 256 EDTLGC-VDIFVAAIGTGGTITGTGRFLKMM-------NKEIKARILL 295 (295)
Q Consensus 256 ~Ql~~~-~d~vv~pvGtGgt~aGi~~~lk~~-------~~~vkVigV~ 295 (295)
+|+++. ||+||+|+|+||+++|++.+|+++ .+.+|||+|.
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq 281 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQ 281 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEe
Confidence 999754 999999999999999999999997 5789999984
No 50
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=5.9e-42 Score=325.56 Aligned_cols=192 Identities=24% Similarity=0.288 Sum_probs=171.5
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
...++...+++|||++++++++..|.+||+|+|++||+||||||+|.+++.++.++|. .+||++|+||||+|+|+
T Consensus 18 ~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~ 92 (352)
T PRK06721 18 NTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAA 92 (352)
T ss_pred CCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHH
Confidence 3446788899999999999998888999999999999999999999999999999886 56999999999999999
Q ss_pred HHHHcCCeEEEEECCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~-~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
+|+.+|++|+||||+. .+..|+++|+.+||+|+.+++ +++++.+.+.+++++. ++++++ +.|+.+++ ||.|++.
T Consensus 93 ~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~-G~~t~~~ 167 (352)
T PRK06721 93 YAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYRIE-GQKTAAF 167 (352)
T ss_pred HHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchhhh-hhhhHHH
Confidence 9999999999999987 478999999999999999986 5899999999988875 566665 56888876 9999999
Q ss_pred HHHHhhCCCCCEEEEcCCchHHHHH----HHHHHHhcC-CCCEEEEeC
Q 022547 253 EIWEDTLGCVDIFVAAIGTGGTITG----TGRFLKMMN-KEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~~~~d~vv~pvGtGgt~aG----i~~~lk~~~-~~vkVigV~ 295 (295)
||++|+++.+|+||+|+|+||+++| +.+++|+.+ |+++||+|+
T Consensus 168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVe 215 (352)
T PRK06721 168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFE 215 (352)
T ss_pred HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEe
Confidence 9999997689999999999999997 555666664 899999985
No 51
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=2.5e-41 Score=327.58 Aligned_cols=248 Identities=17% Similarity=0.170 Sum_probs=196.8
Q ss_pred ccccccccccccchhcccccccccC---------CCCCcccccchhHhhhhhcCCCcccchhhhhhcccCCCCceecccc
Q 022547 43 INGALATRRRILPIVASAKAGAAAS---------SSSSSLYATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKV 113 (295)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~TPLv~l~~l 113 (295)
....|+.+|+++..+.+.+.+|... .+..+.++..+++++....+.++......+++..+++|||+++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~TPL~~~~~L 86 (427)
T PRK12391 7 DEDEIPTQWYNILADLPEPLPPPLDPGTGEPVTPEDLAPIFPMELIEQEVSTERYIDIPEEVREIYRLWRPTPLIRARRL 86 (427)
T ss_pred ChhhccccceecCCCCCCCCCCCCCCCCCCCCCHHHhhhcChHHHhhccCCcccccCChHHHHHHHcccCCCCeeEchhh
Confidence 3467899999999999887766222 2334557777777777655666666666677788899999999999
Q ss_pred ccCCC--CeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC--
Q 022547 114 TEGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-- 189 (295)
Q Consensus 114 ~~~~g--~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~-- 189 (295)
++.+| ++||+|+|++||+||||+|+|..++..+.++|. ...+++.|+||||+|+|++|+.+|++|+||||..
T Consensus 87 ~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~ 162 (427)
T PRK12391 87 EKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KRLTTETGAGQWGSALALACALFGLECTVFMVRVSY 162 (427)
T ss_pred HhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 98776 699999999999999999999999999999996 2334456789999999999999999999999973
Q ss_pred -CCHHHHHHHHhCCCEEEEeCCCCC----------------hHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022547 190 -TNLERRILLRAFGAEIILTDPEKG----------------LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 190 -~~~~~~~~l~~~GA~Vv~v~~~~~----------------~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
.++.|+.+|+.+||+|+.++++.+ ...++.+|.+.+.+.++.+|+.+++.. +...||.++|.
T Consensus 163 ~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~-~~~~~~~~ig~ 241 (427)
T PRK12391 163 EQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLN-HVLLHQTVIGL 241 (427)
T ss_pred ccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCc-HHHhhHHHHHH
Confidence 467899999999999999986311 112577777777665565555444333 34469999999
Q ss_pred HHHHhhC---CCCCEEEEcCCchHHHHHHHHHHH---hcC-CCCEEEEeC
Q 022547 253 EIWEDTL---GCVDIFVAAIGTGGTITGTGRFLK---MMN-KEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~---~~~d~vv~pvGtGgt~aGi~~~lk---~~~-~~vkVigV~ 295 (295)
||++|+. ..||+||+|+|+||+++|++.+|. ..+ +++|||+|.
T Consensus 242 Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVE 291 (427)
T PRK12391 242 EAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVE 291 (427)
T ss_pred HHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 9999985 369999999999999999998663 234 889999984
No 52
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=1.8e-41 Score=331.12 Aligned_cols=187 Identities=21% Similarity=0.253 Sum_probs=172.4
Q ss_pred hhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~ 176 (295)
.+..++++|||++++ +++.+|.+||+|+|++|||||||||++.+++.+|++.|. ..||++|+||||+|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence 478899999999994 777778899999999999999999999999999998875 56999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHH
Q 022547 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (295)
Q Consensus 177 ~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~ 256 (295)
.+|++|+||||++++..|+.+++.+||+|+.+++ +++++++.+.+++++ .++|++++++|+.+++ ||.|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~-~~~~~~~~~~np~~~e-G~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARL-NGLYNVTPEYNIIGLE-GQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHh-CCeEecCCCCChhHhh-hHHHHHHHHHH
Confidence 9999999999999999999999999999999986 589999999998877 4889999999999987 99999999999
Q ss_pred hhCCCCCEEEEcCCchHHHHHHHHHHHhcCCC------CEEEEeC
Q 022547 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE------IKARILL 295 (295)
Q Consensus 257 Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~------vkVigV~ 295 (295)
|++ ||+||+|+|+||+++|++.+|+++.+. .|||+|.
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq 251 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQ 251 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEe
Confidence 995 999999999999999999999997652 6999983
No 53
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=1.4e-41 Score=327.78 Aligned_cols=189 Identities=25% Similarity=0.233 Sum_probs=173.9
Q ss_pred hhhcccCCCCceeccccccCCCC-eEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~-~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa 175 (295)
.+++++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++|
T Consensus 60 ~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~a 134 (397)
T PRK06260 60 IVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYA 134 (397)
T ss_pred cccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 58899999999999999988887 99999999999999999999999999999886 5699999999999999999
Q ss_pred HHcCCeEEEEECCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHH
Q 022547 176 AVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (295)
Q Consensus 176 ~~~Gi~~~ivvp~~-~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI 254 (295)
+.+|++|+||||+. ++..|+.+++.+||+|+.+++ +++++++.+.+++++. ++|+++++ |+.+++ ||.|+++||
T Consensus 135 a~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~~~-G~~t~a~Ei 209 (397)
T PRK06260 135 ARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFRLE-GQKTIGFEI 209 (397)
T ss_pred HHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchhhc-chhhHHHHH
Confidence 99999999999987 789999999999999999987 5899999999988875 78888887 888886 999999999
Q ss_pred HHhhCC-CCCEEEEcCCchHHHHHHHHHHHhcCC------CCEEEEeC
Q 022547 255 WEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMNK------EIKARILL 295 (295)
Q Consensus 255 ~~Ql~~-~~d~vv~pvGtGgt~aGi~~~lk~~~~------~vkVigV~ 295 (295)
++|+++ .||+||+|+|+||+++|++.+|+++.+ ..|||+|.
T Consensus 210 ~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq 257 (397)
T PRK06260 210 ADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQ 257 (397)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEe
Confidence 999976 699999999999999999999998752 36999984
No 54
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=3.5e-41 Score=326.05 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=187.9
Q ss_pred ccccccccchhcccccccccC---------CCCCcccccchhHhhhhhcCCCcccchhhhhhccc-CCCCceeccccccC
Q 022547 47 LATRRRILPIVASAKAGAAAS---------SSSSSLYATSTREIEKEEGNDFHGVNIAEDVTQLI-GRTPMVYLNKVTEG 116 (295)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~---------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~TPLv~l~~l~~~ 116 (295)
|+.+|+++..+.+.+.+|... .+..+.++..+.+++....+.++.+....+....+ ++|||+++++|++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~v~~~~~l~g~pTPL~r~~~L~~~ 80 (419)
T TIGR01415 1 IPKHWYNILPDLPEPLPPPLDPEGEEPIAIEKLKRIFPEKLLEQEVSGERWIKIPGEVLKRYAQIGRPTPLIRAKGLEEL 80 (419)
T ss_pred CCCcceecCCCCCCCCCCCCCCCCCCcCCHHHHhhhCcHHHHhccccHhhHHhhHHHHHHHHHhcCCCCCeEEccchhhh
Confidence 577999999999877755222 12234566666666665444555553344445556 58999999999988
Q ss_pred CC--CeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC---C
Q 022547 117 CV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---N 191 (295)
Q Consensus 117 ~g--~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~---~ 191 (295)
+| ++||+|+|++||+||||+|+|.+++.++.++|. ...++++|+||||+|+|++|+.+|++|+||||... +
T Consensus 81 lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k 156 (419)
T TIGR01415 81 LGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQK 156 (419)
T ss_pred hCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccC
Confidence 77 699999999999999999999999999999996 24444578899999999999999999999999843 5
Q ss_pred HHHHHHHHhCCCEEEEeCCCCChHH------------------HHHHHHHHHHcCC-CeEEecCCCChHHHHHHHHHHHH
Q 022547 192 LERRILLRAFGAEIILTDPEKGLRG------------------ALDKAEEIVLNTP-NAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 192 ~~~~~~l~~~GA~Vv~v~~~~~~~~------------------a~~~a~~~a~~~~-~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
+.|+.+|+.+||+|+.++.+ +++ ++.+|.+.+.+++ ..|+.+++.|+ ...||.++|+
T Consensus 157 ~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~ 232 (419)
T TIGR01415 157 PYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGL 232 (419)
T ss_pred HHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHH
Confidence 68899999999999999874 333 3566777766544 45666666663 3459999999
Q ss_pred HHHHhhCC---CCCEEEEcCCchHHHHHHHHHHHhc----CCCCEEEEeC
Q 022547 253 EIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMM----NKEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~~---~~d~vv~pvGtGgt~aGi~~~lk~~----~~~vkVigV~ 295 (295)
||++|++. .||+||+|+|+||+++|++.+|.+. .+++|||+|.
T Consensus 233 Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVe 282 (419)
T TIGR01415 233 EAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAE 282 (419)
T ss_pred HHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 99999953 5999999999999999999888332 2589999984
No 55
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.3e-40 Score=314.63 Aligned_cols=178 Identities=20% Similarity=0.215 Sum_probs=160.5
Q ss_pred hhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~ 176 (295)
.++.++|+|||++++ +||+|+|++|||||||||++.+++..+.++|. ..|+++|+||||.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 488999999999974 59999999999999999999999999999875 56999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHH
Q 022547 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (295)
Q Consensus 177 ~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~ 256 (295)
.+|++|+||||++++..|+++|+.+||+|+.+++ +|+++.+. +++ .+.+|++++.|+.+++ ||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~-~g~~~~~~~~np~~ie-G~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AEN-SGYYYASHVLQPQFRD-GIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHh-cCeEeccCCCCccHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999987 47776544 344 3678899999999987 99999999999
Q ss_pred hhCC-CCCEEEEcCCchHHHHHHHHHHHhcCC------CCEEEEeC
Q 022547 257 DTLG-CVDIFVAAIGTGGTITGTGRFLKMMNK------EIKARILL 295 (295)
Q Consensus 257 Ql~~-~~d~vv~pvGtGgt~aGi~~~lk~~~~------~vkVigV~ 295 (295)
|+++ .||+||+|+|+||+++|++++|+++.+ ..|||+|.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq 235 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQ 235 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEe
Confidence 9974 599999999999999999999999764 36999983
No 56
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.5e-40 Score=320.60 Aligned_cols=197 Identities=19% Similarity=0.183 Sum_probs=171.6
Q ss_pred hhhh--hcccCCCCceeccccccCCC-CeEEEEeCCC-CCCCchHHHHHHHHHHHHHH--cCC--------------C--
Q 022547 95 AEDV--TQLIGRTPMVYLNKVTEGCV-GNVAAKLESM-EPCRSVKDRIGYSMITDAEE--SGD--------------I-- 152 (295)
Q Consensus 95 ~~~i--~~~~~~TPLv~l~~l~~~~g-~~I~~K~E~~-nptGS~K~R~a~~~l~~a~~--~g~--------------~-- 152 (295)
..++ .+.+++|||+++++|++.+| .+||+|+|++ ||+||||+||+.+.+..+.. .+. +
T Consensus 33 ~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (399)
T PRK08206 33 RAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVRE 112 (399)
T ss_pred HHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHH
Confidence 3456 67999999999999999999 5999999998 59999999999998888763 221 0
Q ss_pred -CCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCe
Q 022547 153 -TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231 (295)
Q Consensus 153 -~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~ 231 (295)
.++ .+|+++|+||||+|+|++|+.+|++|+||||.++++.|+..|+.+||+|+.++. +++++++.+.+++++. ++
T Consensus 113 ~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~ 188 (399)
T PRK08206 113 KLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GW 188 (399)
T ss_pred hccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CC
Confidence 011 358999999999999999999999999999999999999999999999999996 5899999999988875 77
Q ss_pred EEec-----CCCC-hHHHHHHHHHHHHHHHHhhCC---CCCEEEEcCCchHHHHHHHHHHHhcC--CCCEEEEeC
Q 022547 232 YMFQ-----QFDN-MANLKIHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMN--KEIKARILL 295 (295)
Q Consensus 232 ~~~~-----~~~n-~~~~~~Gy~t~~~EI~~Ql~~---~~d~vv~pvGtGgt~aGi~~~lk~~~--~~vkVigV~ 295 (295)
||++ +|+| +.++..||.|+++||++|+++ .||+||+|+|+||+++|++.+|++++ +.+|||+|+
T Consensus 189 ~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Ve 263 (399)
T PRK08206 189 VVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVE 263 (399)
T ss_pred EEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEEC
Confidence 8886 6875 566667999999999999965 59999999999999999999999984 479999985
No 57
>PLN02569 threonine synthase
Probab=100.00 E-value=3e-40 Score=324.30 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=173.5
Q ss_pred hhhcccCCCCceeccccccC-CCC-eEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEG-CVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~-~g~-~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~a 174 (295)
.++.++|+|||+++++|++. +|+ +||+|+|++|||||||||++.+++..+.+.|........|+++|+||||.|+|++
T Consensus 126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay 205 (484)
T PLN02569 126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY 205 (484)
T ss_pred ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence 47889999999999999988 785 9999999999999999999999999998876532112468999999999999999
Q ss_pred HHHcCCeEEEEECCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 175 AAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 175 a~~~Gi~~~ivvp~~-~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
|+.+|++|+||||++ .+..|+.+++.+||+|+.+++ +|+++++.+++++++. ++|+++++ |+.+++ ||.|+++|
T Consensus 206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~ie-G~kT~a~E 280 (484)
T PLN02569 206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLRLE-GQKTAAIE 280 (484)
T ss_pred HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-CcchhH-hHHHHHHH
Confidence 999999999999996 788999999999999999997 6999999999988775 68888988 898886 99999999
Q ss_pred HHHhhCCC-CCEEEEcCCchHHHHHHHHHHHhcC------CCCEEEEeC
Q 022547 254 IWEDTLGC-VDIFVAAIGTGGTITGTGRFLKMMN------KEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~-~d~vv~pvGtGgt~aGi~~~lk~~~------~~vkVigV~ 295 (295)
|++|+++. ||+||+|+|+||++.|++++||++. +..|||+|.
T Consensus 281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vq 329 (484)
T PLN02569 281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQ 329 (484)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEe
Confidence 99999764 9999999999999999999999863 346999883
No 58
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=3e-40 Score=313.33 Aligned_cols=182 Identities=23% Similarity=0.228 Sum_probs=166.4
Q ss_pred hhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~ 176 (295)
.++.+.|.|||+++. .+||+|+|++|||||||||++.+++.++.+.|. ..||++|+||||+|+|++|+
T Consensus 57 ~~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 124 (347)
T PRK08329 57 LPHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSL 124 (347)
T ss_pred CCcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHH
Confidence 368889999999973 489999999999999999999999999999986 56999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHH
Q 022547 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (295)
Q Consensus 177 ~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~ 256 (295)
++|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+.+++++. +.+|++++.|+.+++ ||.|+++||++
T Consensus 125 ~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~~e-G~~t~~~Ei~e 200 (347)
T PRK08329 125 SEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYFLE-GTKTIAYEIYE 200 (347)
T ss_pred HcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchhhc-cchhHHHHHHH
Confidence 9999999999999999999999999999999987 4778888888888774 778889999999886 99999999999
Q ss_pred hhCCCCCEEEEcCCchHHHHHHHHHHHhcC------CCCEEEEeC
Q 022547 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMN------KEIKARILL 295 (295)
Q Consensus 257 Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~------~~vkVigV~ 295 (295)
|++ .||+||+|+|+||+++|++++||++. +..|||+|.
T Consensus 201 ql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq 244 (347)
T PRK08329 201 QIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQ 244 (347)
T ss_pred HcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEe
Confidence 995 79999999999999999999999873 558999984
No 59
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-41 Score=300.72 Aligned_cols=198 Identities=36% Similarity=0.581 Sum_probs=174.5
Q ss_pred hhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~ 176 (295)
-+...+|+|||++++.|++..|++||.|+|.+||+||.|||.|.++|..|++.|++.+| .+|++.|+||+|+++|..|+
T Consensus 42 Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~v~~ 120 (391)
T KOG1481|consen 42 GVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAHVAR 120 (391)
T ss_pred hhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHHhhh
Confidence 56788999999999999999999999999999999999999999999999999999999 56999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCC--C---h-HHHHHHHHHHHHcCC--CeEEecCCCChHHHHHHHH
Q 022547 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK--G---L-RGALDKAEEIVLNTP--NAYMFQQFDNMANLKIHFD 248 (295)
Q Consensus 177 ~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~--~---~-~~a~~~a~~~a~~~~--~~~~~~~~~n~~~~~~Gy~ 248 (295)
.+|++|+|+||++.+.+|.+.++.+||+|..|+... + | ..+.+.|.+...+.. ..||.+||+|.+||.+||.
T Consensus 121 a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHye 200 (391)
T KOG1481|consen 121 ALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYE 200 (391)
T ss_pred hcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhc
Confidence 999999999999999999999999999999887632 1 2 223333333332221 2477899999999999999
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCC-CEEEEeC
Q 022547 249 STGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE-IKARILL 295 (295)
Q Consensus 249 t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~-vkVigV~ 295 (295)
++|+|||.|+.+++|.+++.+|||||++|+.+++|+..+. +.++..|
T Consensus 201 tTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laD 248 (391)
T KOG1481|consen 201 TTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLAD 248 (391)
T ss_pred CcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeC
Confidence 9999999999999999999999999999999999998876 6766544
No 60
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=5.1e-39 Score=307.48 Aligned_cols=199 Identities=19% Similarity=0.173 Sum_probs=169.4
Q ss_pred chhhhhhcccCCCCceeccccccCCC-CeEEEEeCCCCC-CCchHHHHHHHHHHHHHHc----------------CCCC-
Q 022547 93 NIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEP-CRSVKDRIGYSMITDAEES----------------GDIT- 153 (295)
Q Consensus 93 ~~~~~i~~~~~~TPLv~l~~l~~~~g-~~I~~K~E~~np-tGS~K~R~a~~~l~~a~~~----------------g~~~- 153 (295)
..+++..+.+.+|||++++.|++.+| .+||+|+|++|+ +||||+||+.+.+..+.++ +.++
T Consensus 11 ~~~~~~~~~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (376)
T TIGR01747 11 LAFHKKIPGYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGE 90 (376)
T ss_pred HHHHHhCCCCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHh
Confidence 34455567779999999999999999 499999999985 8999999999999887552 1221
Q ss_pred -CCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeE
Q 022547 154 -PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAY 232 (295)
Q Consensus 154 -~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~ 232 (295)
.+...||++|+||||+|+|++|+.+|++|+||||++++..|+..|+.+||+|+.+++ +|+++.+.+.+++++. ++|
T Consensus 91 ~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~ 167 (376)
T TIGR01747 91 KMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWV 167 (376)
T ss_pred hcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcE
Confidence 123579999999999999999999999999999999999999999999999999986 5999999999988775 678
Q ss_pred Eec-----CCCC--hHHHHHHHHHHHHHHHHhhCC----CCCEEEEcCCchHHHHHHHHHHHhcC-CC-CEEEEeC
Q 022547 233 MFQ-----QFDN--MANLKIHFDSTGPEIWEDTLG----CVDIFVAAIGTGGTITGTGRFLKMMN-KE-IKARILL 295 (295)
Q Consensus 233 ~~~-----~~~n--~~~~~~Gy~t~~~EI~~Ql~~----~~d~vv~pvGtGgt~aGi~~~lk~~~-~~-vkVigV~ 295 (295)
+++ +|++ +..+ .||.|++.||++|+.. .||+||+|+|+||+++|++.++++.. ++ ++||+|.
T Consensus 168 ~~~~~~~~~~~~~~~~ii-~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Ve 242 (376)
T TIGR01747 168 VVQDTAWEGYEKIPTWIM-QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVE 242 (376)
T ss_pred EeccccccccccCCchHH-HHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 876 4666 4434 5999999999999952 79999999999999999999997764 33 5999983
No 61
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=7.3e-39 Score=299.22 Aligned_cols=188 Identities=20% Similarity=0.182 Sum_probs=159.8
Q ss_pred ccCCCCceeccccccCCCCeEEEEeCCCCCC--CchHHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCCccHHHHHHHHH
Q 022547 101 LIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGLGIAFVAA 176 (295)
Q Consensus 101 ~~~~TPLv~l~~l~~~~g~~I~~K~E~~npt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~a--SsGN~g~AlA~aa~ 176 (295)
...+|||+++++|+...|.+||+|+|++||+ ||||+|++.+++.+++++|. +.||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 4579999999999988889999999999998 99999999999999999986 568888 45999999999999
Q ss_pred HcCCeEEEEECCCC-CHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHH----cCC-CeEEecCCCChHHHHHHHHHH
Q 022547 177 VKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL----NTP-NAYMFQQFDNMANLKIHFDST 250 (295)
Q Consensus 177 ~~Gi~~~ivvp~~~-~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~----~~~-~~~~~~~~~n~~~~~~Gy~t~ 250 (295)
.+|++++||||... +..+..+++.+||+|++++.. +|++..+.+.++++ +.+ ..++.+++.|+.+++ ||.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999865 456677789999999999863 35554444444432 322 234568889998887 77789
Q ss_pred HHHHHHhhCC--CCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 251 GPEIWEDTLG--CVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 251 ~~EI~~Ql~~--~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
++||++|+++ .+|+||+|+|||||++|++.+||+.+|+++||||+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~ 203 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVA 203 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 9999999964 79999999999999999999999999999999984
No 62
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=2.3e-39 Score=304.57 Aligned_cols=189 Identities=21% Similarity=0.155 Sum_probs=167.8
Q ss_pred hhhhcccCCCCceeccccccCCCC-eEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHH
Q 022547 96 EDVTQLIGRTPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (295)
Q Consensus 96 ~~i~~~~~~TPLv~l~~l~~~~g~-~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~a 174 (295)
+.+...+++|||++++++++.+|. +||+|+|++|||||||||++.+++.++.++|. ..||++|+||||+|+|++
T Consensus 15 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~ 89 (328)
T TIGR00260 15 DLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAY 89 (328)
T ss_pred hhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 357778899999999999888887 99999999999999999999999999998886 469999999999999999
Q ss_pred HHHcCCeEEEEECCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCC-hHHHHHHHHHHHH
Q 022547 175 AAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDN-MANLKIHFDSTGP 252 (295)
Q Consensus 175 a~~~Gi~~~ivvp~~-~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n-~~~~~~Gy~t~~~ 252 (295)
|+.+|++|+||||+. +++.|+..++.+||+|+.+++ +++++.+.+.+++++. +.++++.+++ +.++. ||.|+++
T Consensus 90 a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~~~-g~~t~~~ 165 (328)
T TIGR00260 90 AGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNSVNSIPYRLE-GQKTYAF 165 (328)
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-CeeecccCCCCCeEee-eehhHHH
Confidence 999999999999998 899999999999999999986 5899999999988774 4555554422 66665 8899999
Q ss_pred HHHHhhCC-CCCEEEEcCCchHHHHHHHHHHHhc-------CCCCEEEEeC
Q 022547 253 EIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMM-------NKEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~~-~~d~vv~pvGtGgt~aGi~~~lk~~-------~~~vkVigV~ 295 (295)
||++|+++ .+|+||+|+|+||+++|++.+|+++ .| +|++|+
T Consensus 166 Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve 214 (328)
T TIGR00260 166 EAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQ 214 (328)
T ss_pred HHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEE
Confidence 99999974 7999999999999999999999984 45 888874
No 63
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=6.6e-39 Score=308.58 Aligned_cols=201 Identities=22% Similarity=0.210 Sum_probs=168.1
Q ss_pred cchhhhhhcccCCCCceeccccccCCC-CeEEEEeCCCCC-CCchHHHHHHHHHHHHHH--cCC--------------CC
Q 022547 92 VNIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEP-CRSVKDRIGYSMITDAEE--SGD--------------IT 153 (295)
Q Consensus 92 ~~~~~~i~~~~~~TPLv~l~~l~~~~g-~~I~~K~E~~np-tGS~K~R~a~~~l~~a~~--~g~--------------~~ 153 (295)
+..+++..+.+.+|||++++.|++.+| .+||+|+|++|+ +||||+||+.+.+..+.+ .|. ..
T Consensus 29 ~~~~~~~~~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~ 108 (396)
T TIGR03528 29 VRAFHQSFPGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIR 108 (396)
T ss_pred HHHHHhcCCCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHH
Confidence 344556667889999999999999999 599999999985 999999999999988633 221 00
Q ss_pred --CCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCe
Q 022547 154 --PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231 (295)
Q Consensus 154 --~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~ 231 (295)
.....||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+.+++++. ++
T Consensus 109 ~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~ 185 (396)
T TIGR03528 109 EKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GW 185 (396)
T ss_pred hhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cc
Confidence 012369999999999999999999999999999999999999999999999999986 5899999999998874 77
Q ss_pred EEec-----CCCChH-HHHHHHHHHHHHHHHhhC----CCCCEEEEcCCchHHHHHHHHHHHhc-CCCC-EEEEeC
Q 022547 232 YMFQ-----QFDNMA-NLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKMM-NKEI-KARILL 295 (295)
Q Consensus 232 ~~~~-----~~~n~~-~~~~Gy~t~~~EI~~Ql~----~~~d~vv~pvGtGgt~aGi~~~lk~~-~~~v-kVigV~ 295 (295)
+|++ +|+|.. ....||.|++.||++|++ +.||+||+|+|+||+++|++.++++. .+++ +||+|.
T Consensus 186 ~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Ve 261 (396)
T TIGR03528 186 VMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVE 261 (396)
T ss_pred EeeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEc
Confidence 8875 676632 233599999999999995 26999999999999999999999543 4444 899984
No 64
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.7e-38 Score=305.11 Aligned_cols=226 Identities=17% Similarity=0.173 Sum_probs=173.5
Q ss_pred ccCCCCCcccccchhHhhhhhcCCCccc---chhhhh-hccc-CCCCceeccccccCCC-CeEEEEeCCCCCCCchHHHH
Q 022547 65 AASSSSSSLYATSTREIEKEEGNDFHGV---NIAEDV-TQLI-GRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRI 138 (295)
Q Consensus 65 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~i-~~~~-~~TPLv~l~~l~~~~g-~~I~~K~E~~nptGS~K~R~ 138 (295)
...++.|+...+.+.+.....++.+.+. ..++.+ ..++ .+|||+++++|++.+| .+||+|+|++||+||||+|+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~ 85 (385)
T TIGR00263 6 FGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINN 85 (385)
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHH
Confidence 3445556655555555554433333322 233444 3344 4899999999998887 79999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC-CCH--HHHHHHHhCCCEEEEeCCC-CCh
Q 022547 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNL--ERRILLRAFGAEIILTDPE-KGL 214 (295)
Q Consensus 139 a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~-~~~--~~~~~l~~~GA~Vv~v~~~-~~~ 214 (295)
+..++..+++.|. +.+|+++|+||||+|+|++|+.+|++|+||||+. .+. .++++|+.+||+|+.++.. +.+
T Consensus 86 a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~ 161 (385)
T TIGR00263 86 ALGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTL 161 (385)
T ss_pred HHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCH
Confidence 9999999988885 3456679999999999999999999999999975 443 5788999999999999753 357
Q ss_pred HHHHHHH-HHHHHcCCCeEEe-cCCCC----hHHHHHHHHHHHHHHHHhhC---C-CCCEEEEcCCchHHHHHHHHHHHh
Q 022547 215 RGALDKA-EEIVLNTPNAYMF-QQFDN----MANLKIHFDSTGPEIWEDTL---G-CVDIFVAAIGTGGTITGTGRFLKM 284 (295)
Q Consensus 215 ~~a~~~a-~~~a~~~~~~~~~-~~~~n----~~~~~~Gy~t~~~EI~~Ql~---~-~~d~vv~pvGtGgt~aGi~~~lk~ 284 (295)
+++++.+ .+++++.++.+|+ +++.| +.++..||+|++.||++|+. + .||+||+|+|+||+++|++.++.+
T Consensus 162 ~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~ 241 (385)
T TIGR00263 162 KDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID 241 (385)
T ss_pred HHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh
Confidence 7776444 4445554455555 44443 35666799999999999983 2 589999999999999999998855
Q ss_pred cCCCCEEEEeC
Q 022547 285 MNKEIKARILL 295 (295)
Q Consensus 285 ~~~~vkVigV~ 295 (295)
.|++|||||+
T Consensus 242 -~~~~~iigVe 251 (385)
T TIGR00263 242 -DPSVQLIGVE 251 (385)
T ss_pred -CCCCeEEEEE
Confidence 6899999995
No 65
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=1.7e-38 Score=299.51 Aligned_cols=197 Identities=20% Similarity=0.160 Sum_probs=167.5
Q ss_pred chhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCC--CchHHHHHHHHHHHHHHcCCCCCCCeEEEEeC--CCccH
Q 022547 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLVEPT--TGNTG 168 (295)
Q Consensus 93 ~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~npt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aS--sGN~g 168 (295)
..+.++...+++|||++++.|++..|.+||+|+|++||+ ||||+|++.+++.+++++|. +.||++| +||||
T Consensus 4 ~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g 78 (331)
T PRK03910 4 ARFPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHA 78 (331)
T ss_pred CcCCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHH
Confidence 345678889999999999999888889999999999997 59999999999999999886 4577775 38999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCH--------HHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHcCCCeE-EecCCC
Q 022547 169 LGIAFVAAVKGYKLIVTMPASTNL--------ERRILLRAFGAEIILTDPEKGLRG-ALDKAEEIVLNTPNAY-MFQQFD 238 (295)
Q Consensus 169 ~AlA~aa~~~Gi~~~ivvp~~~~~--------~~~~~l~~~GA~Vv~v~~~~~~~~-a~~~a~~~a~~~~~~~-~~~~~~ 238 (295)
+|+|++|+.+|++|+||||...+. .|+..++.+||+|+.++...++.+ +.+.+.++.++.+..| +..++.
T Consensus 79 ~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 158 (331)
T PRK03910 79 RQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGS 158 (331)
T ss_pred HHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCC
Confidence 999999999999999999998765 566899999999999987533333 3455666666543333 446788
Q ss_pred ChHHHHHHHHHHHHHHHHhhCC---CCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 239 NMANLKIHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 239 n~~~~~~Gy~t~~~EI~~Ql~~---~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|+.++. ||.+++.||++|++. .+|+||+|+|||||++|++.+||+.+++++||||+
T Consensus 159 ~~~~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe 217 (331)
T PRK03910 159 NALGAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVT 217 (331)
T ss_pred CchhHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 999886 889999999999953 69999999999999999999999999999999984
No 66
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4e-38 Score=302.75 Aligned_cols=226 Identities=17% Similarity=0.152 Sum_probs=178.3
Q ss_pred ccCCCCCcccccchhHhhhhhcCCCcc---cchhhhh-hcccC-CCCceeccccccCC-CCeEEEEeCCCCCCCchHHHH
Q 022547 65 AASSSSSSLYATSTREIEKEEGNDFHG---VNIAEDV-TQLIG-RTPMVYLNKVTEGC-VGNVAAKLESMEPCRSVKDRI 138 (295)
Q Consensus 65 ~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~i-~~~~~-~TPLv~l~~l~~~~-g~~I~~K~E~~nptGS~K~R~ 138 (295)
....+.|...-+++.+.++.+..-..+ ...+..+ ..+++ +|||+++++|++.+ |.+||+|+|++||+||||+|.
T Consensus 18 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~ 97 (402)
T PRK13028 18 YGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINN 97 (402)
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHH
Confidence 455566666666777777655332222 2334443 34555 79999999999988 579999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH---HHHHHHHhCCCEEEEeCC-CCCh
Q 022547 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL---ERRILLRAFGAEIILTDP-EKGL 214 (295)
Q Consensus 139 a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~---~~~~~l~~~GA~Vv~v~~-~~~~ 214 (295)
+..++..+++.|+ +.+|+++|+||||+|+|++|+.+|++|+||||+...+ .|+.+|+.+||+|+.++. ..++
T Consensus 98 al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~ 173 (402)
T PRK13028 98 CLGQALLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTL 173 (402)
T ss_pred HHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCH
Confidence 9999999999886 3567789999999999999999999999999985333 567899999999999975 3468
Q ss_pred HHHHHHHHH-HHHcCCCeEEec-CC----CChHHHHHHHHHHHHHHHHhhC----CCCCEEEEcCCchHHHHHHHHHHHh
Q 022547 215 RGALDKAEE-IVLNTPNAYMFQ-QF----DNMANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKM 284 (295)
Q Consensus 215 ~~a~~~a~~-~a~~~~~~~~~~-~~----~n~~~~~~Gy~t~~~EI~~Ql~----~~~d~vv~pvGtGgt~aGi~~~lk~ 284 (295)
+++++.|.+ ++++.++.+|+. ++ ..+.++..|+.+++.||.+|+. ..||+||+|||+||+++|++.+|++
T Consensus 174 ~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~ 253 (402)
T PRK13028 174 KEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD 253 (402)
T ss_pred HHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh
Confidence 999888855 455534566652 22 1244555699999999999972 3699999999999999999999986
Q ss_pred cCCCCEEEEeC
Q 022547 285 MNKEIKARILL 295 (295)
Q Consensus 285 ~~~~vkVigV~ 295 (295)
.++++||||+
T Consensus 254 -~~~v~iigVE 263 (402)
T PRK13028 254 -DESVRLVGVE 263 (402)
T ss_pred -CCCceEEEEe
Confidence 4899999985
No 67
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=4.2e-38 Score=302.22 Aligned_cols=226 Identities=17% Similarity=0.196 Sum_probs=177.0
Q ss_pred ccCCCCCcccccchhHhhhhhcCCCcc---cchhhhhh-cccC-CCCceeccccccCC-CCeEEEEeCCCCCCCchHHHH
Q 022547 65 AASSSSSSLYATSTREIEKEEGNDFHG---VNIAEDVT-QLIG-RTPMVYLNKVTEGC-VGNVAAKLESMEPCRSVKDRI 138 (295)
Q Consensus 65 ~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~i~-~~~~-~TPLv~l~~l~~~~-g~~I~~K~E~~nptGS~K~R~ 138 (295)
....|-|...-+++.+.++.+..-..+ ...++.+. .++| +|||+++++|++.+ |++||+|+|++|||||||+|+
T Consensus 14 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~ 93 (397)
T PRK04346 14 FGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINN 93 (397)
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHH
Confidence 455566666666666766655332222 23444443 4455 69999999999988 579999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC-CC--HHHHHHHHhCCCEEEEeCC-CCCh
Q 022547 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TN--LERRILLRAFGAEIILTDP-EKGL 214 (295)
Q Consensus 139 a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~-~~--~~~~~~l~~~GA~Vv~v~~-~~~~ 214 (295)
+...+..|++.|+ +.+|+++|+||||+|+|++|+++|++|+||||+. ++ ..|+.+|+.+||+|+.++. ..++
T Consensus 94 al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l 169 (397)
T PRK04346 94 VLGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTL 169 (397)
T ss_pred HHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCH
Confidence 9999999999886 3567778999999999999999999999999985 33 3567889999999999985 3467
Q ss_pred HHHHHHHHH-HHHcCCCeEEe-cCCCC----hHHHHHHHHHHHHHHHHhhC----CCCCEEEEcCCchHHHHHHHHHHHh
Q 022547 215 RGALDKAEE-IVLNTPNAYMF-QQFDN----MANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKM 284 (295)
Q Consensus 215 ~~a~~~a~~-~a~~~~~~~~~-~~~~n----~~~~~~Gy~t~~~EI~~Ql~----~~~d~vv~pvGtGgt~aGi~~~lk~ 284 (295)
+++++++.+ ++++.++.+|+ .++.+ +.++..||+|++.||.+|+. ..||+||+|||+||+++|++.+|++
T Consensus 170 ~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~ 249 (397)
T PRK04346 170 KDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID 249 (397)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh
Confidence 888777755 45543354554 33322 34555699999999999973 3699999999999999999999976
Q ss_pred cCCCCEEEEeC
Q 022547 285 MNKEIKARILL 295 (295)
Q Consensus 285 ~~~~vkVigV~ 295 (295)
.+++|||||.
T Consensus 250 -~~~v~iigVE 259 (397)
T PRK04346 250 -DESVRLIGVE 259 (397)
T ss_pred -CCCCeEEEEe
Confidence 7899999984
No 68
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.1e-37 Score=297.57 Aligned_cols=201 Identities=18% Similarity=0.174 Sum_probs=161.0
Q ss_pred cccchhhhhhc--ccCCCCceeccccccCC-CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc
Q 022547 90 HGVNIAEDVTQ--LIGRTPMVYLNKVTEGC-VGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGN 166 (295)
Q Consensus 90 ~~~~~~~~i~~--~~~~TPLv~l~~l~~~~-g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN 166 (295)
+....++.+.. ...+|||+++++|++.+ +.+||+|+|++||+||||+|++..++..+.++|. ..+|+++|+||
T Consensus 18 ~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssGN 93 (365)
T cd06446 18 DFPEELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAGQ 93 (365)
T ss_pred ccHHHHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCchH
Confidence 34445566555 34699999999999888 5799999999999999999999999999999886 24444579999
Q ss_pred cHHHHHHHHHHcCCeEEEEECCCCC---HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHH-HHcC-CCeEEecCC---
Q 022547 167 TGLGIAFVAAVKGYKLIVTMPASTN---LERRILLRAFGAEIILTDPE-KGLRGALDKAEEI-VLNT-PNAYMFQQF--- 237 (295)
Q Consensus 167 ~g~AlA~aa~~~Gi~~~ivvp~~~~---~~~~~~l~~~GA~Vv~v~~~-~~~~~a~~~a~~~-a~~~-~~~~~~~~~--- 237 (295)
||+|+|++|+.+|++|+||||...+ ..|+.+|+.+||+|+.++.. ..+++++..+.+. +++. ...|+++++
T Consensus 94 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~ 173 (365)
T cd06446 94 HGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGP 173 (365)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCC
Confidence 9999999999999999999998643 36788999999999999863 2467776555444 3332 234444433
Q ss_pred -CChHHHHHHHHHHHHHHHHhhC----CCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 238 -DNMANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 238 -~n~~~~~~Gy~t~~~EI~~Ql~----~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
.+..++++||.|+++||++|+. ..||+||+|+|+|||++|++.++++ .+++|||+|+
T Consensus 174 ~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVe 235 (365)
T cd06446 174 HPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVE 235 (365)
T ss_pred CCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEc
Confidence 2245677899999999999985 3699999999999999999998887 4589999985
No 69
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.4e-37 Score=314.49 Aligned_cols=226 Identities=17% Similarity=0.178 Sum_probs=181.3
Q ss_pred ccCCCCCcccccchhHhhhhhcCCCccc---chhhh-hhcccC-CCCceeccccccC----CC--CeEEEEeCCCCCCCc
Q 022547 65 AASSSSSSLYATSTREIEKEEGNDFHGV---NIAED-VTQLIG-RTPMVYLNKVTEG----CV--GNVAAKLESMEPCRS 133 (295)
Q Consensus 65 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~-i~~~~~-~TPLv~l~~l~~~----~g--~~I~~K~E~~nptGS 133 (295)
....|-|...-+.+.+.++.+..-..+. ..+.. ...++| +|||+++++|++. +| ++||+|+|++|||||
T Consensus 282 ~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS 361 (695)
T PRK13802 282 FGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGA 361 (695)
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCC
Confidence 4455566666666666666554333332 23333 346678 9999999998753 44 799999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC---CCHHHHHHHHhCCCEEEEeCC
Q 022547 134 VKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 134 ~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~---~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
||+|++.+++..+++.|+ ..+|+++|+||||+|+|++|+++|++|+||||+. .+..|+.+|+.+||+|+.++.
T Consensus 362 ~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~ 437 (695)
T PRK13802 362 HKINNALGQALLVKRMGK----TRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTL 437 (695)
T ss_pred cHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECC
Confidence 999999999999999997 3568899999999999999999999999999985 467899999999999999984
Q ss_pred -CCChHHHHHHH-HHHHHcCC-CeEEecCCCCh----HHHHHHHHHHHHHHHHhhCC-----CCCEEEEcCCchHHHHHH
Q 022547 211 -EKGLRGALDKA-EEIVLNTP-NAYMFQQFDNM----ANLKIHFDSTGPEIWEDTLG-----CVDIFVAAIGTGGTITGT 278 (295)
Q Consensus 211 -~~~~~~a~~~a-~~~a~~~~-~~~~~~~~~n~----~~~~~Gy~t~~~EI~~Ql~~-----~~d~vv~pvGtGgt~aGi 278 (295)
..+++++++++ ++++++.+ ..|+++++.|+ .++..||.++|.||++|+.. .||+||+|||+||+++|+
T Consensus 438 g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi 517 (695)
T PRK13802 438 GDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGV 517 (695)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHH
Confidence 33678887666 44565433 45777887654 45667999999999999842 699999999999999999
Q ss_pred HHHHHhcCCCCEEEEeC
Q 022547 279 GRFLKMMNKEIKARILL 295 (295)
Q Consensus 279 ~~~lk~~~~~vkVigV~ 295 (295)
+.+|++ .+++|||||.
T Consensus 518 ~~~f~~-~~~vkligVE 533 (695)
T PRK13802 518 MNAFLD-DERVNLYGYE 533 (695)
T ss_pred HHHHHh-CCCceEEEEE
Confidence 999976 6899999984
No 70
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.1e-37 Score=288.69 Aligned_cols=186 Identities=32% Similarity=0.465 Sum_probs=156.8
Q ss_pred hhcccCCCCceecc--ccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHH
Q 022547 98 VTQLIGRTPMVYLN--KVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (295)
Q Consensus 98 i~~~~~~TPLv~l~--~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa 175 (295)
|++++++|||++++ .+....+.+||+|+|++||+||||+|++.+++.+++++|. +.|+++|+||||+|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 57889999999975 4555668899999999999999999999999999998875 5689999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHH-------cCCCeEEecCCCChHHHHHHHH
Q 022547 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL-------NTPNAYMFQQFDNMANLKIHFD 248 (295)
Q Consensus 176 ~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~-------~~~~~~~~~~~~n~~~~~~Gy~ 248 (295)
+.+|++|+||+|++++..++++++.+||+|+.++.. ++++.+.+.++++ ..++. ++|| +..+...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 999999999999999999999999999999998763 4444443333332 21222 6777 4445556999
Q ss_pred HHHHHHHHhhCCCCCE--EEEcCCchHHHHHHHHHHHh--cCCCCEEEEeC
Q 022547 249 STGPEIWEDTLGCVDI--FVAAIGTGGTITGTGRFLKM--MNKEIKARILL 295 (295)
Q Consensus 249 t~~~EI~~Ql~~~~d~--vv~pvGtGgt~aGi~~~lk~--~~~~vkVigV~ 295 (295)
+++.||++|++ .+|. ||+|+|+||+++|++.+++. . |+++||+|+
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~ 199 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVE 199 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEE
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeee
Confidence 99999999997 6665 99999999999999999999 7 899999984
No 71
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=7.9e-38 Score=294.77 Aligned_cols=198 Identities=19% Similarity=0.213 Sum_probs=165.6
Q ss_pred cchhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCC--CchHHHHHHHHHHHHHHcCCCCCCCeEEE--EeCCCcc
Q 022547 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLV--EPTTGNT 167 (295)
Q Consensus 92 ~~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~npt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv--~aSsGN~ 167 (295)
++.++++.+..++|||++++++++..|++||+|+|++||+ ||||+|++.+++.++.++|. .+|| ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHH
Confidence 4456788999999999999999888889999999999986 79999999999999999987 3455 6899999
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHH-HHHHHHhCCCEEEEeCCCCC---hHHHHHHHHHHHHcCCCeEE-ecCCCChHH
Q 022547 168 GLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDPEKG---LRGALDKAEEIVLNTPNAYM-FQQFDNMAN 242 (295)
Q Consensus 168 g~AlA~aa~~~Gi~~~ivvp~~~~~~-~~~~l~~~GA~Vv~v~~~~~---~~~a~~~a~~~a~~~~~~~~-~~~~~n~~~ 242 (295)
|+|+|++|+.+|++|++|||...+.. +...++.+||+|+.++...+ ++.+.+.+.+++++.+..|+ .+++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999865433 66678999999998874322 34566666666666544555 467788988
Q ss_pred HHHHHHHHHHHHHHhhC---CCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 243 LKIHFDSTGPEIWEDTL---GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 243 ~~~Gy~t~~~EI~~Ql~---~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
+. ||.+...||++|+. ..+|+||+|+|||||++|++.++|..+|++|||||+
T Consensus 164 ~~-g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~ 218 (329)
T PRK14045 164 TL-GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIA 218 (329)
T ss_pred HH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 87 55555559999985 379999999999999999999999999999999985
No 72
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=3e-37 Score=296.97 Aligned_cols=228 Identities=19% Similarity=0.201 Sum_probs=176.7
Q ss_pred ccccCCCCCcccccchhHhhhhhcCCCccc---chh-hhhhcccC-CCCceeccccccCC------CCeEEEEeCCCCCC
Q 022547 63 GAAASSSSSSLYATSTREIEKEEGNDFHGV---NIA-EDVTQLIG-RTPMVYLNKVTEGC------VGNVAAKLESMEPC 131 (295)
Q Consensus 63 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~-~~i~~~~~-~TPLv~l~~l~~~~------g~~I~~K~E~~npt 131 (295)
+.....+-|...-+++.+.++.+.+-..+. ..+ +.+..++| +|||+++++|++.+ |++||+|+|++|||
T Consensus 20 g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnpt 99 (410)
T PLN02618 20 GKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHT 99 (410)
T ss_pred cCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCc
Confidence 345566667777777777777654433332 233 34567775 89999999999876 48999999999999
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC---CHHHHHHHHhCCCEEEEe
Q 022547 132 RSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEIILT 208 (295)
Q Consensus 132 GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~---~~~~~~~l~~~GA~Vv~v 208 (295)
||||+|++...+..|++.|+ +.+|+++|+||||+|+|++|+.+|++|+||||+.. ...|+.+|+.+||+|+.+
T Consensus 100 GS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v 175 (410)
T PLN02618 100 GAHKINNAVAQALLAKRLGK----KRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPV 175 (410)
T ss_pred cchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEE
Confidence 99999999999988888875 35556777999999999999999999999999853 245677999999999999
Q ss_pred CC-CCChHHHHHHH-HHHHHcCCCeEEe-cCCC--C--hHHHHHHHHHHHHHHHHhh----CCCCCEEEEcCCchHHHHH
Q 022547 209 DP-EKGLRGALDKA-EEIVLNTPNAYMF-QQFD--N--MANLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTITG 277 (295)
Q Consensus 209 ~~-~~~~~~a~~~a-~~~a~~~~~~~~~-~~~~--n--~~~~~~Gy~t~~~EI~~Ql----~~~~d~vv~pvGtGgt~aG 277 (295)
+. ..++++++.++ ++++++..+.+|+ ++.. + +.....|+.++|.||.+|+ +..||+||+|||+||+++|
T Consensus 176 ~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~G 255 (410)
T PLN02618 176 HSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMG 255 (410)
T ss_pred eCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHH
Confidence 54 34688888554 4566653455555 2221 1 2333459999999997776 3469999999999999999
Q ss_pred HHHHHHhcCCCCEEEEeC
Q 022547 278 TGRFLKMMNKEIKARILL 295 (295)
Q Consensus 278 i~~~lk~~~~~vkVigV~ 295 (295)
++.+|++ ++++|||||+
T Consensus 256 i~~~f~~-~~~v~ligVE 272 (410)
T PLN02618 256 LFHEFID-DEDVRLIGVE 272 (410)
T ss_pred HHHHHHh-CCCceEEEEE
Confidence 9999975 6899999985
No 73
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3e-37 Score=291.63 Aligned_cols=197 Identities=20% Similarity=0.118 Sum_probs=163.2
Q ss_pred chhhhhhcccCCCCceeccccccCCC--CeEEEEeCCCCCC---CchHHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCC
Q 022547 93 NIAEDVTQLIGRTPMVYLNKVTEGCV--GNVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTG 165 (295)
Q Consensus 93 ~~~~~i~~~~~~TPLv~l~~l~~~~g--~~I~~K~E~~npt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~a--SsG 165 (295)
+.++++...+++|||+++++++...| .+||+|+|++||+ ||||+|++.+++.+++++|. .+|+++ |+|
T Consensus 4 ~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~G 78 (337)
T PRK12390 4 QKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQS 78 (337)
T ss_pred CCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCcc
Confidence 34567888999999999999988877 7999999999987 78899999999999999997 557777 779
Q ss_pred ccHHHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHhCCCEEEEeCCCC--ChHHHHHHHHHHHHcCCCeEE-e
Q 022547 166 NTGLGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPNAYM-F 234 (295)
Q Consensus 166 N~g~AlA~aa~~~Gi~~~ivvp~~~~--------~~~~~~l~~~GA~Vv~v~~~~--~~~~a~~~a~~~a~~~~~~~~-~ 234 (295)
|||+|+|++|+.+|++|+||++..++ ..|+.+++.+||+|+.++... +++++++.+.+.+++..+..| +
T Consensus 79 N~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (337)
T PRK12390 79 NHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAI 158 (337)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEe
Confidence 99999999999999999999876544 237779999999999998731 244777777776666334334 5
Q ss_pred cCCCC--hHHHHHHHHHHHHHHHHh---hCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 235 QQFDN--MANLKIHFDSTGPEIWED---TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 235 ~~~~n--~~~~~~Gy~t~~~EI~~Q---l~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
+.+.+ +... .||.++++||++| +++.+|+||+|+|||||++|++.+||+.+|++|||+|+
T Consensus 159 ~~~~~~~~~~~-~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~ 223 (337)
T PRK12390 159 PAGASDHPLGG-LGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGID 223 (337)
T ss_pred CCcCCCCCccc-HHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEE
Confidence 54433 3233 3899999999998 44579999999999999999999999999999999985
No 74
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-38 Score=276.10 Aligned_cols=193 Identities=18% Similarity=0.323 Sum_probs=175.6
Q ss_pred hhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 94 ~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
++.++.+.+..||.+-.+.|-+..|.+||+|+|++|.+|+||.|||.+.+..+..... ...|++.||||||.|+|+
T Consensus 15 A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHaqAlal 90 (323)
T KOG1251|consen 15 AHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHAQALAL 90 (323)
T ss_pred HHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999988763322 145999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
+|+..|++++||||.+.+..|+..++.|||+|+++++. .++.-..+.++.++. +.+.+++|+++..+ +|++|++.|
T Consensus 91 aAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqgTiA~E 166 (323)
T KOG1251|consen 91 AAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQGTIALE 166 (323)
T ss_pred HHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccchHHHH
Confidence 99999999999999999999999999999999999974 455666678888875 88999999999887 499999999
Q ss_pred HHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 254 I~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
+++|. +.+|.+|+|+|+||+++|++...+.+.|+++|++|.
T Consensus 167 lleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~ve 207 (323)
T KOG1251|consen 167 LLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVE 207 (323)
T ss_pred HHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEec
Confidence 99998 589999999999999999999999999999999983
No 75
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=3.1e-37 Score=287.94 Aligned_cols=185 Identities=22% Similarity=0.192 Sum_probs=154.7
Q ss_pred CCceeccccccCC--CCeEEEEeCCCCCC---CchHHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCCccHHHHHHHHHH
Q 022547 105 TPMVYLNKVTEGC--VGNVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGLGIAFVAAV 177 (295)
Q Consensus 105 TPLv~l~~l~~~~--g~~I~~K~E~~npt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~a--SsGN~g~AlA~aa~~ 177 (295)
|||+++++|+..+ +.+||+|+|++||+ ||||+|++.+++.+++++|. ..||++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 57999999999998 57799999999999999987 557887 579999999999999
Q ss_pred cCCeEEEEECCCCC--------HHHHHHHHhCCCEEEEeCCCC--ChHHHHHHHHH-HHHcCCCeEE-ecCC-CChHHHH
Q 022547 178 KGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEK--GLRGALDKAEE-IVLNTPNAYM-FQQF-DNMANLK 244 (295)
Q Consensus 178 ~Gi~~~ivvp~~~~--------~~~~~~l~~~GA~Vv~v~~~~--~~~~a~~~a~~-~a~~~~~~~~-~~~~-~n~~~~~ 244 (295)
+|++|+||||.+.+ ..|+++++.+||+|+.++... +..++.+.+.+ +.++.+..|+ .+++ +|+.++.
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 99999999999776 468999999999999998642 11233333333 3333223344 4555 4888886
Q ss_pred HHHHHHHHHHHHhhCC---CCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 245 IHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 245 ~Gy~t~~~EI~~Ql~~---~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
||.+++.||++|+.. .+|+||+|+|||||++|++.+||+.++++|||+|+
T Consensus 156 -G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~ 208 (307)
T cd06449 156 -GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGID 208 (307)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEE
Confidence 999999999999854 69999999999999999999999999999999985
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=6.9e-37 Score=289.21 Aligned_cols=197 Identities=22% Similarity=0.140 Sum_probs=163.8
Q ss_pred chhhhhhcccCCCCceeccccccCCCC--eEEEEeCCCCCC---CchHHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCC
Q 022547 93 NIAEDVTQLIGRTPMVYLNKVTEGCVG--NVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTG 165 (295)
Q Consensus 93 ~~~~~i~~~~~~TPLv~l~~l~~~~g~--~I~~K~E~~npt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~a--SsG 165 (295)
+.++++...+++|||++++++++.+|. +||+|+|++||+ ||||+|++.+++.+++++|. ++|+++ ++|
T Consensus 3 ~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~g 77 (337)
T TIGR01274 3 SRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQS 77 (337)
T ss_pred CcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcc
Confidence 345688899999999999999988874 999999999976 78899999999999999997 557776 569
Q ss_pred ccHHHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHhCCCEEEEeCCCC--ChHHHHHHHHHHHHcC-CCeEEe
Q 022547 166 NTGLGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNT-PNAYMF 234 (295)
Q Consensus 166 N~g~AlA~aa~~~Gi~~~ivvp~~~~--------~~~~~~l~~~GA~Vv~v~~~~--~~~~a~~~a~~~a~~~-~~~~~~ 234 (295)
|||+|+|++|+.+|++|+||||+..+ ..|+.+++.+||+|+.++... +..+++..+.+.+++. +..|++
T Consensus 78 N~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i 157 (337)
T TIGR01274 78 NQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPI 157 (337)
T ss_pred hHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999998542 589999999999999998631 1235666666555554 233666
Q ss_pred cCCC--ChHHHHHHHHHHHHHHHHhh---CCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 235 QQFD--NMANLKIHFDSTGPEIWEDT---LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 235 ~~~~--n~~~~~~Gy~t~~~EI~~Ql---~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
..+. ++.... ||.+++.||++|+ +..||+||+|+|+|||++|++.++++.++++|||||+
T Consensus 158 ~~~~~~~~~~~~-G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~ 222 (337)
T TIGR01274 158 PAGCSDHPLGGL-GFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGID 222 (337)
T ss_pred CCCCCCCccchh-HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEE
Confidence 5543 344444 8999999999995 3479999999999999999999999999999999984
No 77
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.6e-36 Score=302.65 Aligned_cols=226 Identities=16% Similarity=0.143 Sum_probs=178.2
Q ss_pred ccCCCCCcccccchhHhhhhhcCCCcc---cchhhhhhccc--CCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHH
Q 022547 65 AASSSSSSLYATSTREIEKEEGNDFHG---VNIAEDVTQLI--GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIG 139 (295)
Q Consensus 65 ~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~--~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a 139 (295)
....|-|...-+++.+.++.+..-.++ ...++.+...+ .+|||+++++|++.+|.+||+|+|++|||||||+|++
T Consensus 227 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~a 306 (610)
T PRK13803 227 FGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNA 306 (610)
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHH
Confidence 555566666666777776655433333 34555555444 5899999999998889999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC---CHHHHHHHHhCCCEEEEeCCC-CChH
Q 022547 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEIILTDPE-KGLR 215 (295)
Q Consensus 140 ~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~---~~~~~~~l~~~GA~Vv~v~~~-~~~~ 215 (295)
...+..+.+.|+ +.+|+++|+||||+|+|++|+.+|++|+||||+.. ...|+.+|+.+||+|+.++.. .+++
T Consensus 307 l~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~ 382 (610)
T PRK13803 307 LGQALLAKRMGK----TRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLK 382 (610)
T ss_pred HHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHH
Confidence 999999988885 35566799999999999999999999999999763 356788999999999999852 3577
Q ss_pred HHHHHHHH-HHHcCCCeEEecCCC-C----hHHHHHHHHHHHHHHHHhhC----CCCCEEEEcCCchHHHHHHHHHHHhc
Q 022547 216 GALDKAEE-IVLNTPNAYMFQQFD-N----MANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKMM 285 (295)
Q Consensus 216 ~a~~~a~~-~a~~~~~~~~~~~~~-n----~~~~~~Gy~t~~~EI~~Ql~----~~~d~vv~pvGtGgt~aGi~~~lk~~ 285 (295)
++++++.+ +..+.++.+|+.++. + +.++..||+|+|.||++|+. ..||+||+|+|+||+++|++.+|++
T Consensus 383 ~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~- 461 (610)
T PRK13803 383 DAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD- 461 (610)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-
Confidence 88766554 334445666664331 1 44554589999999999983 2699999999999999999999965
Q ss_pred CCCCEEEEeC
Q 022547 286 NKEIKARILL 295 (295)
Q Consensus 286 ~~~vkVigV~ 295 (295)
+++++||||+
T Consensus 462 ~~~v~iigVE 471 (610)
T PRK13803 462 DPSVKLIGVE 471 (610)
T ss_pred CCCceEEEEe
Confidence 7899999984
No 78
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=8.4e-35 Score=280.17 Aligned_cols=177 Identities=16% Similarity=0.089 Sum_probs=153.1
Q ss_pred hcccCCCCceeccccccCCCC-eEEEE-------eCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHH
Q 022547 99 TQLIGRTPMVYLNKVTEGCVG-NVAAK-------LESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLG 170 (295)
Q Consensus 99 ~~~~~~TPLv~l~~l~~~~g~-~I~~K-------~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~A 170 (295)
....+.|||++.++|++.+|+ +||+| +|++|||||||||++.++|..+.+.|. ..||++|+||||.|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence 345668999999999999998 99995 555899999999999999999999884 56999999999999
Q ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHH
Q 022547 171 IAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (295)
Q Consensus 171 lA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~ 250 (295)
+|++|+++|++|+||||.+++..+...++.+||+|+.+++ +|+++.+.+.+++++. ++|..++++|+..++ |++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~ie-G~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVARRD-GMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHHHh-hHHHH
Confidence 9999999999999999998644333345788999999986 5999999999988774 655556678888775 99999
Q ss_pred HHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHh
Q 022547 251 GPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKM 284 (295)
Q Consensus 251 ~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~ 284 (295)
++||++|++..||+||+|+|+|+...|++.++++
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~ 241 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMR 241 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 9999999964589999999999889999998887
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.5e-29 Score=242.76 Aligned_cols=182 Identities=23% Similarity=0.192 Sum_probs=166.4
Q ss_pred hhhcccCCCCceeccccccCCCC---eEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHH
Q 022547 97 DVTQLIGRTPMVYLNKVTEGCVG---NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (295)
Q Consensus 97 ~i~~~~~~TPLv~l~~l~~~~g~---~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~ 173 (295)
.+....+.||+++.+++...+|. ++|+|.|+.|||||||||++..++..+.+.|. .+|+++|+||+|.++|.
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 55777899999999888888774 59999999999999999999999999999984 35899999999999999
Q ss_pred HHHHcCCeEEEEECCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022547 174 VAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 174 aa~~~Gi~~~ivvp~~-~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
++.+.|++|+|++|.+ ++..|+.+|..+||+++.+++ +||+|++.+++++++. ++++....-|+..++ |+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~rle-gq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYRLE-GQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHHhh-hhhhhHh
Confidence 9999999999999997 999999999999999999997 5999999999999864 557777778888886 9999999
Q ss_pred HHHHhhC-CCCCEEEEcCCchHHHHHHHHHHHhcCC
Q 022547 253 EIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNK 287 (295)
Q Consensus 253 EI~~Ql~-~~~d~vv~pvGtGgt~aGi~~~lk~~~~ 287 (295)
||++|++ ..||+|++|+|+||++.|++.++++..+
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~ 255 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLP 255 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhccc
Confidence 9999997 4799999999999999999999998765
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.95 E-value=2.6e-27 Score=216.24 Aligned_cols=186 Identities=19% Similarity=0.228 Sum_probs=156.4
Q ss_pred CCCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeE
Q 022547 103 GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKL 182 (295)
Q Consensus 103 ~~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~ 182 (295)
+||||...++|++.+|++||+|+|++|.||+||+..+...+.-|++.|+ +++|.+.+.|.||.|.|.+|+++|++|
T Consensus 55 RptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~fgl~C 130 (396)
T COG0133 55 RPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAALFGLEC 130 (396)
T ss_pred CCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHHhCCce
Confidence 5699999999999999999999999999999999999999999999998 677888999999999999999999999
Q ss_pred EEEECC-CCC--HHHHHHHHhCCCEEEEeCC-CCChHHHHHHHH-HHHHcCCCeEEe-------cCCCChHHHHHHHHHH
Q 022547 183 IVTMPA-STN--LERRILLRAFGAEIILTDP-EKGLRGALDKAE-EIVLNTPNAYMF-------QQFDNMANLKIHFDST 250 (295)
Q Consensus 183 ~ivvp~-~~~--~~~~~~l~~~GA~Vv~v~~-~~~~~~a~~~a~-~~a~~~~~~~~~-------~~~~n~~~~~~Gy~t~ 250 (295)
+|||-. ++. ..+.-+|+.+||+|+.|.. ..+..||+.+|. .+.......+|+ ++| |.....-+..|
T Consensus 131 ~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPy--P~iVRdFQ~vI 208 (396)
T COG0133 131 VIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPY--PTIVRDFQSVI 208 (396)
T ss_pred EEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCc--hHHHHHHHHHH
Confidence 999986 343 3456789999999998854 456889998884 455555566775 333 44444468899
Q ss_pred HHHHHHhh----CCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 251 GPEIWEDT----LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 251 ~~EI~~Ql----~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
|.|.-+|+ +.-||.||.|||+|+++.|+...|.. .+++++|||.
T Consensus 209 G~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvE 256 (396)
T COG0133 209 GEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVE 256 (396)
T ss_pred hHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEec
Confidence 99998886 34699999999999999999988865 4689999983
No 81
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.95 E-value=8.6e-27 Score=212.16 Aligned_cols=198 Identities=19% Similarity=0.153 Sum_probs=162.4
Q ss_pred cchhhhhhcccCCCCceeccccccCCCCeEEEEeCCCCC--CCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCC--Ccc
Q 022547 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEP--CRSVKDRIGYSMITDAEESGDITPGKTVLVEPTT--GNT 167 (295)
Q Consensus 92 ~~~~~~i~~~~~~TPLv~l~~l~~~~g~~I~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSs--GN~ 167 (295)
+..|+|+.....+|||.+++++++.+|++||+|+||..+ .|.||+|+..+++.+|+.+|. +++|++++ .||
T Consensus 3 l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh 77 (323)
T COG2515 3 LSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNH 77 (323)
T ss_pred cccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhH
Confidence 345678888899999999999999999999999999964 378999999999999999997 77999988 799
Q ss_pred HHHHHHHHHHcCCeEEEEECCCC----CHHHHHHHHhCCCEEEEeCCCCCh--HHHHHHHHHHHHcCCCe-EEec-CCCC
Q 022547 168 GLGIAFVAAVKGYKLIVTMPAST----NLERRILLRAFGAEIILTDPEKGL--RGALDKAEEIVLNTPNA-YMFQ-QFDN 239 (295)
Q Consensus 168 g~AlA~aa~~~Gi~~~ivvp~~~----~~~~~~~l~~~GA~Vv~v~~~~~~--~~a~~~a~~~a~~~~~~-~~~~-~~~n 239 (295)
.+++|++|+++|++|+.++.... -..++.+.+.+|++++.++...++ +...+...+..++.++. |.+. +..|
T Consensus 78 ~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~ 157 (323)
T COG2515 78 VRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSS 157 (323)
T ss_pred HHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcC
Confidence 99999999999999999998654 234677888899999999886554 33344444443333333 3333 3334
Q ss_pred hHHHHHHHHHHHHHHHHhhC--CCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 240 MANLKIHFDSTGPEIWEDTL--GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 240 ~~~~~~Gy~t~~~EI~~Ql~--~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
+..- .||...+.||.+|.. -++|.||+++|||||.+|++.++...+++++||||+
T Consensus 158 ~~g~-lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~ 214 (323)
T COG2515 158 PLGA-LGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGID 214 (323)
T ss_pred cccc-ccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEe
Confidence 4333 399999999999986 589999999999999999999999999999999985
No 82
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.95 E-value=4.2e-27 Score=215.38 Aligned_cols=246 Identities=19% Similarity=0.159 Sum_probs=189.3
Q ss_pred cccccccccccchhcccccccccCC---------CCCcccccchhHhhhhhcCCCcccchhhhhhccc-CCCCceecccc
Q 022547 44 NGALATRRRILPIVASAKAGAAASS---------SSSSLYATSTREIEKEEGNDFHGVNIAEDVTQLI-GRTPMVYLNKV 113 (295)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~TPLv~l~~l 113 (295)
...|+.||++...|++-+-+|...+ -..+.+|..+++++-...+-++......+....+ +||||++..+|
T Consensus 8 ~~eiPk~WYNIlpDLPepLppP~dP~t~~~~~~e~L~~ifp~~lieqE~s~eR~i~IP~Ev~e~Y~~~gRPTPL~RA~~L 87 (432)
T COG1350 8 EDEIPKRWYNILPDLPEPLPPPLDPETGEPIRPELLKKIFPKKLIEQEFSGERYIKIPEEVREAYLQIGRPTPLIRAKNL 87 (432)
T ss_pred cccccHHHHhcccCCCCCCCCCCCccccCCCCHHHHHHhccHHHHHHHhhhhhcccCcHHHHHHHHHhCCCCchhhhhhH
Confidence 3568889999987776554432211 1233478888887776666777777777777778 58999999999
Q ss_pred ccCCC--CeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC---
Q 022547 114 TEGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA--- 188 (295)
Q Consensus 114 ~~~~g--~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~--- 188 (295)
.+-+| ++||+|.|...|+||||+..|......+...|. +..+.+.+.|.||.|++++|+.+|++|+|||-.
T Consensus 88 E~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy 163 (432)
T COG1350 88 EEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSY 163 (432)
T ss_pred HHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHHHHHHHHhCceeEEEEEehhh
Confidence 88765 699999999999999999999999999999997 455667777999999999999999999999965
Q ss_pred CCCHHHHHHHHhCCCEEEEeCCCCC----------------hHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022547 189 STNLERRILLRAFGAEIILTDPEKG----------------LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 189 ~~~~~~~~~l~~~GA~Vv~v~~~~~----------------~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
...+.++-+|+.+||+|+..+.+.+ .-=|+.+|.+.+-++++..|.-+..-.... .|+..+|.
T Consensus 164 ~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnhvl-lhQTViGl 242 (432)
T COG1350 164 YQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNHVL-LHQTVIGL 242 (432)
T ss_pred hcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHHHH-HHHHHHhH
Confidence 3567889999999999998876422 112567777777666656665544333334 39999999
Q ss_pred HHHHhh---CCCCCEEEEcCCchHHHHHHHHHHHh---cC-CCCEEEEe
Q 022547 253 EIWEDT---LGCVDIFVAAIGTGGTITGTGRFLKM---MN-KEIKARIL 294 (295)
Q Consensus 253 EI~~Ql---~~~~d~vv~pvGtGgt~aGi~~~lk~---~~-~~vkVigV 294 (295)
|.-+|+ +..||++|.|||+|++++|+..-|-. .+ ..+++|+|
T Consensus 243 EakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAv 291 (432)
T COG1350 243 EAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAV 291 (432)
T ss_pred HHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEe
Confidence 996665 55799999999999999999866532 12 22778887
No 83
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.94 E-value=8.7e-27 Score=214.88 Aligned_cols=258 Identities=19% Similarity=0.135 Sum_probs=181.9
Q ss_pred cccccccCCcccccccc---cccccccchhccccccc-----ccCCCCCcccccchhHhhhhh---cCCCcccchhhhhh
Q 022547 31 RFARFKTSSLSSINGAL---ATRRRILPIVASAKAGA-----AASSSSSSLYATSTREIEKEE---GNDFHGVNIAEDVT 99 (295)
Q Consensus 31 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~i~ 99 (295)
..+..++++++ .++++ +..|++++.+...+++| ...+|.|-+..-.+++.+... ..+.+.-+.+..++
T Consensus 38 slr~~~~~~~t-~~~sva~~p~~~~~l~~d~~~~~~P~r~gkfgg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy 116 (477)
T KOG1395|consen 38 SLRVKAALRFT-HNKSVAEIPPQWYNLVADLSVKPPPPRFGKFGGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIY 116 (477)
T ss_pred ccccccccccc-cCceeeeCCHHHHhccCchhhcCCCccccccCCccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34444444444 34444 45889988888887776 344555554444344433321 22333345566666
Q ss_pred -cccCCCCceeccccccCC--CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHH
Q 022547 100 -QLIGRTPMVYLNKVTEGC--VGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (295)
Q Consensus 100 -~~~~~TPLv~l~~l~~~~--g~~I~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~ 176 (295)
-..+||||++.++|.+.+ |.+||+|+|++|++||+|+..|...+..|.+.|+ +.+|.+.+.|.||.|+|.+|+
T Consensus 117 ~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a 192 (477)
T KOG1395|consen 117 KYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACA 192 (477)
T ss_pred HHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHH
Confidence 444679999999999866 5799999999999999999999999999999998 577888888999999999999
Q ss_pred HcCCeEEEEECCC---CCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHH-HHcCCCeEEecC-----CCChHHHHHH
Q 022547 177 VKGYKLIVTMPAS---TNLERRILLRAFGAEIILTDPE-KGLRGALDKAEEI-VLNTPNAYMFQQ-----FDNMANLKIH 246 (295)
Q Consensus 177 ~~Gi~~~ivvp~~---~~~~~~~~l~~~GA~Vv~v~~~-~~~~~a~~~a~~~-a~~~~~~~~~~~-----~~n~~~~~~G 246 (295)
++|++|+|+|-.. ....++-+||.+||+|+.+... ...+++..++.++ .....-.+|+-. +--+.....-
T Consensus 193 ~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~f 272 (477)
T KOG1395|consen 193 KFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTF 272 (477)
T ss_pred HhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHH
Confidence 9999999999753 3556788999999999988652 2355665555433 222223344321 1112222235
Q ss_pred HHHHHHHHHHhh----CCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEe
Q 022547 247 FDSTGPEIWEDT----LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARIL 294 (295)
Q Consensus 247 y~t~~~EI~~Ql----~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV 294 (295)
+++|+.|-..|. +..||.||.|||+|++.+|+..-|..- ..++.|+|
T Consensus 273 hsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igv 323 (477)
T KOG1395|consen 273 HSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGV 323 (477)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeee
Confidence 688888887775 357999999999999999999888753 35666665
No 84
>PRK09225 threonine synthase; Validated
Probab=99.88 E-value=1.5e-21 Score=190.96 Aligned_cols=176 Identities=15% Similarity=0.081 Sum_probs=139.7
Q ss_pred CCCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHH---HHHHHHHcCCCCCCCeEEEEeCCCccHHHH-HHHHHHcC
Q 022547 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYS---MITDAEESGDITPGKTVLVEPTTGNTGLGI-AFVAAVKG 179 (295)
Q Consensus 104 ~TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~---~l~~a~~~g~~~~g~~~vv~aSsGN~g~Al-A~aa~~~G 179 (295)
.+||++++. ++|+.--+.+||||||||++.. ++..+.+ +. ...|+++||||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 478887742 4788555557999999999988 7888877 42 3679999999999998 78889999
Q ss_pred CeEEEEECCC-CCHHHHHHHHhC-CCEEEEeCCCCChHHHHHHHHHHHHcC-----CCeEEecCCCChHHHHHHHHHHHH
Q 022547 180 YKLIVTMPAS-TNLERRILLRAF-GAEIILTDPEKGLRGALDKAEEIVLNT-----PNAYMFQQFDNMANLKIHFDSTGP 252 (295)
Q Consensus 180 i~~~ivvp~~-~~~~~~~~l~~~-GA~Vv~v~~~~~~~~a~~~a~~~a~~~-----~~~~~~~~~~n~~~~~~Gy~t~~~ 252 (295)
++|+|++|++ ++..++.+|..+ |++|..+.-+++||+|...++++..+. -+++-.+. -|+..++ |+.+.+.
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANS-INIGRLL-AQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHHH-HHHHHHH
Confidence 9999999985 999999999999 998843333346999998888876541 13444454 4777776 9999999
Q ss_pred HHHHhhCC---CCCEEEEcCCchHHHHHHHHHHHhcCCCC-EEEEe
Q 022547 253 EIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEI-KARIL 294 (295)
Q Consensus 253 EI~~Ql~~---~~d~vv~pvGtGgt~aGi~~~lk~~~~~v-kVigV 294 (295)
|+++|++. .+|.||+|+|.||++.|.+.+ ++++..+ |+|++
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A 278 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVA 278 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHH-HHcCCCcceEEEE
Confidence 99999964 489999999999999999999 5555444 66654
No 85
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.87 E-value=1.3e-20 Score=184.48 Aligned_cols=174 Identities=15% Similarity=0.094 Sum_probs=139.7
Q ss_pred CCceeccccccCCCCeEEEEeCCCCCCCchHHHHHHHH---HHHHHHcCCCCCCCeEEEEeCCCccHHH-HHHHHHHcCC
Q 022547 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSM---ITDAEESGDITPGKTVLVEPTTGNTGLG-IAFVAAVKGY 180 (295)
Q Consensus 105 TPLv~l~~l~~~~g~~I~~K~E~~nptGS~K~R~a~~~---l~~a~~~g~~~~g~~~vv~aSsGN~g~A-lA~aa~~~Gi 180 (295)
+||.++.. ++|++-.+.+||||||||++..+ +..++++.. +...|+++||||+|.| ++.++...|+
T Consensus 88 ~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 78887752 58998888899999999999876 666665411 2367999999999999 4888999999
Q ss_pred eEEEEECCC-CCHHHHHHHHhCCC---EEEEeCCCCChHHHHHHHHHHHHcC-----CCeEEecCCCChHHHHHHHHHHH
Q 022547 181 KLIVTMPAS-TNLERRILLRAFGA---EIILTDPEKGLRGALDKAEEIVLNT-----PNAYMFQQFDNMANLKIHFDSTG 251 (295)
Q Consensus 181 ~~~ivvp~~-~~~~~~~~l~~~GA---~Vv~v~~~~~~~~a~~~a~~~a~~~-----~~~~~~~~~~n~~~~~~Gy~t~~ 251 (295)
+|+|++|.+ +++.++.+|..+|+ +++.+++ +||+|...++++..+. -+++-.+. -|+..++ |+.+.+
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWARIL-AQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHHH-HHHHHH
Confidence 999999985 99999999999996 7777776 6999998888876541 13344444 4777776 999999
Q ss_pred HHHHHhhCC----CCCEEEEcCCchHHHHHHHHHHHhcCCCC-EEEE
Q 022547 252 PEIWEDTLG----CVDIFVAAIGTGGTITGTGRFLKMMNKEI-KARI 293 (295)
Q Consensus 252 ~EI~~Ql~~----~~d~vv~pvGtGgt~aGi~~~lk~~~~~v-kVig 293 (295)
.|+++|+.. .+|.|++|+|.||.+.|.+.+.+ ++..+ |+|+
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~-mGlpi~kli~ 279 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKK-MGLPIKKLIV 279 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHH-cCCCCccEEE
Confidence 999999963 58999999999999999999965 44443 5655
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.66 E-value=8.3e-16 Score=140.37 Aligned_cols=191 Identities=21% Similarity=0.259 Sum_probs=156.5
Q ss_pred hcccCCCCceecccc----ccCC----CCeEEEEeCCCCC-CCchHHHHHHHHHH-HH----HHcCCCCCCC--------
Q 022547 99 TQLIGRTPMVYLNKV----TEGC----VGNVAAKLESMEP-CRSVKDRIGYSMIT-DA----EESGDITPGK-------- 156 (295)
Q Consensus 99 ~~~~~~TPLv~l~~l----~~~~----g~~I~~K~E~~np-tGS~K~R~a~~~l~-~a----~~~g~~~~g~-------- 156 (295)
..++..+||++++.+ .+++ ..++|+|+++.-| +||+|.||..|-+. +| ++.|.++-.+
T Consensus 73 ~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~ 152 (443)
T COG3048 73 TGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSE 152 (443)
T ss_pred cCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcH
Confidence 567888999998643 3333 3589999999887 69999999888654 33 3555543321
Q ss_pred --------eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcC
Q 022547 157 --------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNT 228 (295)
Q Consensus 157 --------~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~ 228 (295)
-.|...|+||.|.++..+.+.+|++++|.|..+....|.+++|+.|.+|+.... +|..++++-++.++..
T Consensus 153 ~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~D 230 (443)
T COG3048 153 EFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESD 230 (443)
T ss_pred HHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccC
Confidence 237789999999999999999999999999999999999999999999999987 5999999999999999
Q ss_pred CCeEEecCCCChHHHHHHHHHHHHHHHHhhC--------CCCCEEEEcCCchHHHHHHHHHHHhcC-CCCEEE
Q 022547 229 PNAYMFQQFDNMANLKIHFDSTGPEIWEDTL--------GCVDIFVAAIGTGGTITGTGRFLKMMN-KEIKAR 292 (295)
Q Consensus 229 ~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~--------~~~d~vv~pvGtGgt~aGi~~~lk~~~-~~vkVi 292 (295)
|..||++.-++..... ||...+.-|-.|++ ..|-.|..|||.||.-.|++.++|..+ .++.++
T Consensus 231 P~c~FiDDE~S~~LFL-GYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~Vhcf 302 (443)
T COG3048 231 PNCFFIDDENSRTLFL-GYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCF 302 (443)
T ss_pred CceEEecccchhhhhh-hHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEE
Confidence 9999998866655554 99999999988873 246689999999999999999999864 345443
No 87
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.47 E-value=0.46 Score=37.70 Aligned_cols=41 Identities=27% Similarity=0.328 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCC
Q 022547 168 GLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 168 g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~ 211 (295)
|..++..|+.+|.+++++.+ .+.|++.++.+||+.++...+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~ 43 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSD 43 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTT
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccc
Confidence 66777888889966555543 567888889999887776654
No 88
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=91.46 E-value=1.2 Score=38.01 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCeEE-EEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHH
Q 022547 168 GLGIAFVAAVKGYKLI-VTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH 246 (295)
Q Consensus 168 g~AlA~aa~~~Gi~~~-ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~G 246 (295)
|..+.++++.+|.++. -+...+.-..-+..+...|-.|.++++. .+...+.+..+.++.|+.-.+.-+..+.+.. -
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~-~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDEE-E 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCChh-h
Confidence 4788999999998873 3333333445556666778899999874 2333333455666666654443222221111 2
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCchHH
Q 022547 247 FDSTGPEIWEDTLGCVDIFVAAIGTGGT 274 (295)
Q Consensus 247 y~t~~~EI~~Ql~~~~d~vv~pvGtGgt 274 (295)
...+..+|-+ ..+|.|+++.|+.--
T Consensus 90 ~~~i~~~I~~---~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 90 EEAIINRINA---SGPDIVFVGLGAPKQ 114 (172)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCHH
Confidence 2333333322 268999999997643
No 89
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.06 E-value=2.1 Score=40.42 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=46.0
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
.+.+++|++.||.+.+|.-|..+.-.|+.+|...++++. ..+|.+.++.+||+.++.-.
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~y~ 195 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVINYR 195 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEcCC
Confidence 566778889999999999999999999999984444433 33666699999998776543
No 90
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.67 E-value=3.3 Score=37.99 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=44.5
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeC
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~ 209 (295)
+.+.+++|+..+|...+|..|.++...|+.+|++++++.. +.++.+.++.+|++-++..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEeC
Confidence 3455677878778777899999999999999998655543 4577888888998655443
No 91
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=90.50 E-value=16 Score=34.53 Aligned_cols=146 Identities=12% Similarity=0.135 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC--------C---CH---HHH--HHH-HhCC-
Q 022547 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS--------T---NL---ERR--ILL-RAFG- 202 (295)
Q Consensus 141 ~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~--------~---~~---~~~--~~l-~~~G- 202 (295)
..+..+.+++. +-+++.+...+.-...-..+...|++++.+-... + .. ... +.+ +.+|
T Consensus 71 ~~i~~li~~~v----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~~ 146 (336)
T PRK15408 71 QLINNFVNQGY----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGK 146 (336)
T ss_pred HHHHHHHHcCC----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcCC
Confidence 56677777776 2334433333333444455777899988764321 0 11 111 122 2333
Q ss_pred --CEEEEeCCCCCh---HHHHHHHHH-HHHcCCCeEEec-CCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHH
Q 022547 203 --AEIILTDPEKGL---RGALDKAEE-IVLNTPNAYMFQ-QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI 275 (295)
Q Consensus 203 --A~Vv~v~~~~~~---~~a~~~a~~-~a~~~~~~~~~~-~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~ 275 (295)
.+|.++.+..+. .+..+-..+ +.++.++.-.+. ++.+.. ...++. .+.++++.. +++|.||++ +...+
T Consensus 147 g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d-~~~a~~-~~~~lL~~~-pdi~aI~~~--~~~~~ 221 (336)
T PRK15408 147 DKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYND-ATKSLQ-TAEGILKAY-PDLDAIIAP--DANAL 221 (336)
T ss_pred CCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCc-HHHHHH-HHHHHHHHC-CCCcEEEEC--CCccH
Confidence 577666442221 111222222 223445554443 333322 222443 555677663 689999987 33445
Q ss_pred HHHHHHHHhcCC-CCEEEEeC
Q 022547 276 TGTGRFLKMMNK-EIKARILL 295 (295)
Q Consensus 276 aGi~~~lk~~~~-~vkVigV~ 295 (295)
.|+..++++.+. +++|+|+|
T Consensus 222 ~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 222 PAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred HHHHHHHHhCCCCCEEEEEeC
Confidence 578888888653 68889886
No 92
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.23 E-value=9.3 Score=36.19 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=43.5
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeC
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~ 209 (295)
+...+++|++.+|. ++|..|.+++..|+.+|.+.++++. ..+.+++.++.+||+.++..
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~~ 243 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATVNA 243 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEeCC
Confidence 44557778777775 4688999999999999996444443 45678888899999755543
No 93
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.81 E-value=10 Score=35.38 Aligned_cols=59 Identities=24% Similarity=0.266 Sum_probs=43.7
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
.+...+.+|++.+|. ++|..|.+++..|+.+|.+.++++. .+..+++.++.+|++-++-
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~i~ 211 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQTFN 211 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceEec
Confidence 344556677777777 5789999999999999998655543 3557888889999975543
No 94
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.11 E-value=2.5 Score=39.73 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=42.5
Q ss_pred CCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 152 ~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
+.+|++.+|. +.|..|...+..|+.+|.+++++.....++.|++.++.+||+.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 3456666666 56999999999999999986666655556789999999999875
No 95
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.06 E-value=11 Score=35.93 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=43.5
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-CCCEEEEeCC
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIILTDP 210 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~-~GA~Vv~v~~ 210 (295)
+++..+.|.-|...+..++.+|...+|+++ ..+.++++.+. .|++++....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d--~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVD--RSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHhCCCeEeecCc
Confidence 588899999999999999999999998884 56789998877 7888777665
No 96
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.04 E-value=14 Score=34.22 Aligned_cols=58 Identities=34% Similarity=0.526 Sum_probs=42.5
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeC
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~ 209 (295)
...+.+++..+| .++|..|.+++..|+.+|++.++.+... +.+.+.++.+|++-++-.
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v~~~ 220 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDIVAE 220 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceEecC
Confidence 445667777777 4589999999999999999865555433 467788888999644433
No 97
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.95 E-value=5.9 Score=34.76 Aligned_cols=51 Identities=27% Similarity=0.442 Sum_probs=42.0
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeC
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~ 209 (295)
++|+..+|+.|..++.+....|.++.+++.+. +....+.++..|++++..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 36788889999999999999999999999876 4456677888999988554
No 98
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.85 E-value=4.8 Score=38.86 Aligned_cols=57 Identities=28% Similarity=0.418 Sum_probs=43.2
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
....+.+|++.+| .++|..|.+++..|+.+|.+.+++.. ..+.+++..+.+||+.+.
T Consensus 179 ~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~v~ 235 (393)
T TIGR02819 179 VTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCETVD 235 (393)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeEEe
Confidence 3455677777666 67789999999999999998766443 246788888889998543
No 99
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.69 E-value=4.8 Score=37.75 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=41.3
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
..+..+++|++.+|... |..|.+++.+|+.+|.+++++ ..++.+++.++.+|++.++.
T Consensus 159 ~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 33455677777666555 999999999999999974443 23556778888889875543
No 100
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=88.68 E-value=3 Score=40.59 Aligned_cols=126 Identities=14% Similarity=0.162 Sum_probs=73.9
Q ss_pred EEEeCCC-ccHHHHHHHHHHcCCeEEEEECC-CCC----HHHHHHHHhCCC-EEEEeCCCCChHHHH-HHHHHHHHc---
Q 022547 159 LVEPTTG-NTGLGIAFVAAVKGYKLIVTMPA-STN----LERRILLRAFGA-EIILTDPEKGLRGAL-DKAEEIVLN--- 227 (295)
Q Consensus 159 vv~aSsG-N~g~AlA~aa~~~Gi~~~ivvp~-~~~----~~~~~~l~~~GA-~Vv~v~~~~~~~~a~-~~a~~~a~~--- 227 (295)
|+.+|+| .+...+.+.....+++++.|.-+ ..+ ....+....+|| ++++++.. ++-. +.+....+.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r---~ef~~~~i~~aI~anA~ 77 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR---DEFAEDYIFPAIKANAL 77 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H---HHHHHHTHHHHHHTT--
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH---HHHHHHHHHHHHHHHHH
Confidence 4678888 78888899888888999877643 323 233445677899 99999863 2222 222222222
Q ss_pred CCCeEEecCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEE-cCCchHHHHHHHHHHHhcCCCCEEEE
Q 022547 228 TPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA-AIGTGGTITGTGRFLKMMNKEIKARI 293 (295)
Q Consensus 228 ~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~-pvGtGgt~aGi~~~lk~~~~~vkVig 293 (295)
..|.|++. .....+. ......|+.++. ..++|.- |+|-|--..-.-.+++.+.|+.+|++
T Consensus 78 Yeg~YpL~--tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 78 YEGRYPLS--TSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp BTTTB--C--CCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred hCCCcccc--ccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 12334432 2233333 234455777775 4677877 56888888888899999999999985
No 101
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=88.00 E-value=4.4 Score=34.59 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCeEEEEECC-CCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHH-HHHHHcCCCeEEecCCCChHHHHH
Q 022547 168 GLGIAFVAAVKGYKLIVTMPA-STNLERRILLRAFGAEIILTDPEKGLRGALDKA-EEIVLNTPNAYMFQQFDNMANLKI 245 (295)
Q Consensus 168 g~AlA~aa~~~Gi~~~ivvp~-~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a-~~~a~~~~~~~~~~~~~n~~~~~~ 245 (295)
|..+.++++.+|.+..--++. +.-..-.+.+...|..|.++++. .+.++.+ ..+.++.|+.-.+.-++.+....
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~---~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~- 86 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK---PEVLEKAAERLRARYPGLKIVGYHHGYFGPE- 86 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-
Confidence 478899999999983322322 22233455556668899999874 3444444 45566666655442222221111
Q ss_pred HHHHHHHHHHHhhC-CCCCEEEEcCCchH
Q 022547 246 HFDSTGPEIWEDTL-GCVDIFVAAIGTGG 273 (295)
Q Consensus 246 Gy~t~~~EI~~Ql~-~~~d~vv~pvGtGg 273 (295)
... +|.+++. ..||.|+++.|+--
T Consensus 87 ~~~----~i~~~I~~~~pdiv~vglG~Pk 111 (171)
T cd06533 87 EEE----EIIERINASGADILFVGLGAPK 111 (171)
T ss_pred hHH----HHHHHHHHcCCCEEEEECCCCH
Confidence 111 2444442 36999999999754
No 102
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=87.94 E-value=14 Score=34.89 Aligned_cols=57 Identities=26% Similarity=0.384 Sum_probs=42.3
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+.+++|++.+|. ++|..|.+++..|+.+|.+.++++.. ...+++.++.+|++-++
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 45567788777776 57999999999999999953444332 45788888999996444
No 103
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.85 E-value=22 Score=33.63 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=42.6
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
+.+.+++|++.+|. ++|..|.+++..|+.+|.+-++.+. ....+++.++.+||+.++.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~--~~~~~~~~a~~~Ga~~~i~ 236 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAID--INPAKFELAKKLGATDCVN 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCCeEEc
Confidence 44567778777776 5689999999999999994344432 3567888889999975543
No 104
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.47 E-value=15 Score=34.18 Aligned_cols=58 Identities=29% Similarity=0.339 Sum_probs=42.8
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
....++++++.+|. ++|..|.+++..|+.+|.+.++.+.. ...+....+.+|++.++-
T Consensus 160 ~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~v~ 217 (351)
T cd08285 160 ELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDIVD 217 (351)
T ss_pred HccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceEec
Confidence 44556777777776 57899999999999999975555443 347788888999865543
No 105
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.40 E-value=6.7 Score=36.19 Aligned_cols=58 Identities=24% Similarity=0.416 Sum_probs=44.5
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
+.+.+++|+..+|...+|--|.+++..|+.+|.+++++.. +..+.+.++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4556778878777777899999999999999998665543 456788888899865543
No 106
>PLN02740 Alcohol dehydrogenase-like
Probab=87.32 E-value=20 Score=34.10 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=42.1
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+...+++|++.+|. +.|.-|.+++..|+.+|.+-++.+. ..+.+++.++.+||+.++
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 44567788776666 5799999999999999985344332 245788888999997654
No 107
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.93 E-value=7.6 Score=36.08 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=43.2
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-CCCEEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIIL 207 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~-~GA~Vv~ 207 (295)
.+.+++|+..+|.+.+|.-|.+++..|+.+|.+++++.. +.++.+.++. +|++-++
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 455778888888888899999999999999998655443 4577777877 8986444
No 108
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.22 E-value=4.8 Score=36.57 Aligned_cols=54 Identities=33% Similarity=0.393 Sum_probs=40.5
Q ss_pred CCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 152 ~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
..++++.+|. +.|..|..++..|+.+|.+.++++ +..+.|++..+.+|++.++.
T Consensus 118 ~~~g~~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~ 171 (280)
T TIGR03366 118 DLKGRRVLVV-GAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALAE 171 (280)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEecC
Confidence 3466665555 668899999999999999855555 34668888999999976543
No 109
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=85.61 E-value=3.5 Score=38.66 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=44.4
Q ss_pred cCCCCCCCeEEEEeCC---CccHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhCCCEEEEeCC
Q 022547 149 SGDITPGKTVLVEPTT---GNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSs---GN~g~AlA~aa~~~Gi~~~ivvp~~~--~~~~~~~l~~~GA~Vv~v~~ 210 (295)
.|.++ | ..|+-.+. +|.++++..+++++|++++++.|+.. +.+.++.++..|++|.+++.
T Consensus 145 ~g~l~-g-~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d 209 (301)
T TIGR00670 145 FGRLD-G-LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETES 209 (301)
T ss_pred hCCCC-C-CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECC
Confidence 45543 2 23444555 59999999999999999999999864 55556677778998887763
No 110
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.18 E-value=11 Score=35.50 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=43.3
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hCCCEEEEe
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILT 208 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~-~~GA~Vv~v 208 (295)
+.+.+++|++.+|.+.+|.-|.++...|+.+|.+++++. .+..+.+.++ .+|++-++-
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 345677887877877779999999999999999855443 3456777776 689975553
No 111
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.14 E-value=8.3 Score=36.27 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=41.6
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+.+++|++.+|. ++|-.|.+++..|+.+|.+.++.+. .+..+++.++.+|++-++
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 45567788787776 5688999999999999997444443 245678888888886444
No 112
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=85.09 E-value=7.9 Score=35.84 Aligned_cols=57 Identities=28% Similarity=0.446 Sum_probs=43.0
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+.+.+.+++..+|...+|..|.+++..|+.+|.+++++... . +++.++.+|++.+.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI 226 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence 345567778787887777999999999999999996655432 2 66677788987444
No 113
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.02 E-value=11 Score=38.31 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=46.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
..++.++.|+.|+.+|..-+..|++++++-. ++++.+.++.+|.+++.-+.. ..+.++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~--~~~~L~~a 477 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA--NEEIMQLA 477 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC--CHHHHHhc
Confidence 4578899999999999999999999877643 457788888899998887753 34555444
No 114
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.92 E-value=12 Score=38.43 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=42.1
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
..++.++.|..|+.+|..-...|++++++- .++++.+.++.+|.+++.-|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDa 451 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLE---RDISAVNLMRKYGYKVYYGDA 451 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhCCCeEEEeeC
Confidence 358889999999999999999999987763 345778888889988887665
No 115
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=84.66 E-value=5.9 Score=35.12 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=38.3
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~ 209 (295)
+..+|+.++|.-|.++|......|.+++++-.........+.+...|.++..+.
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 62 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALT 62 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEE
Confidence 467899999999999999999999998776543222233345556677765544
No 116
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=84.54 E-value=11 Score=38.92 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=43.4
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~ 211 (295)
..++.++.|..|+.+|..-...|++++++ +.++++.+.++.+|.+|+.-|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCC
Confidence 45888999999999999999999998777 34567888889899998877653
No 117
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=84.53 E-value=12 Score=34.53 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=40.5
Q ss_pred cCCCCCC--CeEEEEeCCCccHHHHHHHHHHcCC-eEEEEECCCCCHHHHHHHHh-CCCEEEEeC
Q 022547 149 SGDITPG--KTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRA-FGAEIILTD 209 (295)
Q Consensus 149 ~g~~~~g--~~~vv~aSsGN~g~AlA~aa~~~Gi-~~~ivvp~~~~~~~~~~l~~-~GA~Vv~v~ 209 (295)
.+.+++| ++.+|...+|..|.++...|+.+|. +++++.. +.++.+.++. +|++-++..
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 3445554 5777777779999999999999998 5655533 3467777665 888655443
No 118
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.44 E-value=7 Score=34.48 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=40.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+.++|..|.++|......|.+++++...... ....+.++..|.++..+..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECC
Confidence 477899999999999999999999988776654321 23344556678888666543
No 119
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=84.09 E-value=38 Score=31.90 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=41.9
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
+...+++|+..+|. ++|..|.+++..|+.+|.+.++++.. ..++++.++.+|++.++.
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i~ 238 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFVN 238 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEEc
Confidence 34556778776666 56999999999999999943344332 357888889999975553
No 120
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=83.91 E-value=13 Score=34.71 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=43.9
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeC
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~ 209 (295)
+...+.+++..+| .+.|..|.+++..|+.+|.+.++++.. .+.+...++.+|++.++..
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~~~ 226 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVLNP 226 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEecC
Confidence 4556677777666 667999999999999999887666554 3577778888898765433
No 121
>PRK08628 short chain dehydrogenase; Provisional
Probab=83.80 E-value=8 Score=34.18 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=40.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+..+|-.|.++|..-...|.+++++..........+.++..|.+++.+..+
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 63 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVD 63 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEcc
Confidence 46788888899999999999999999887765433333345556678777665543
No 122
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.72 E-value=7.8 Score=34.38 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=38.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+..+|.-|.++|......|.+++++..........+.+...|.++..+..
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQV 70 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEc
Confidence 4778888889999999999999999988876652112233345556777665544
No 123
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=83.53 E-value=10 Score=35.86 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-CCCEEEEeCCCCChH
Q 022547 137 RIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIILTDPEKGLR 215 (295)
Q Consensus 137 R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~-~GA~Vv~v~~~~~~~ 215 (295)
..|++.+ +.-|..++|++.+|++.+|-.|.-+.-.|+..|.+++-+.. .++|.+.+.. +|-+..+=-+..++.
T Consensus 136 ~TAY~gL---l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~idyk~~d~~ 209 (340)
T COG2130 136 LTAYFGL---LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGIDYKAEDFA 209 (340)
T ss_pred HHHHHHH---HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceeeecCcccHH
Confidence 3444443 44567777889999999999999999999999999888765 5688888887 677665543333443
Q ss_pred H
Q 022547 216 G 216 (295)
Q Consensus 216 ~ 216 (295)
+
T Consensus 210 ~ 210 (340)
T COG2130 210 Q 210 (340)
T ss_pred H
Confidence 3
No 124
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.23 E-value=8 Score=34.36 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=39.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..||+.++|.-|+++|......|.+++++-... .....+.++..|.++..+..
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~ 62 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITA 62 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEe
Confidence 4778999999999999999999999987764432 23334556667877765543
No 125
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.12 E-value=28 Score=35.22 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=40.1
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~ 209 (295)
..|+..+.|.-|.+.+.+|+.+|-+++++ +..++++++.+.+||+.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 44788999999999999999999853333 356789999999999966553
No 126
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=83.08 E-value=13 Score=34.39 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=40.4
Q ss_pred CCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 151 ~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+++++..+|...+|..|.+++..|+.+|++++++... +.+.+.++.+|++-++
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~ 215 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAFV 215 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 46677787888777889999999999999987666443 3566666777875443
No 127
>PRK07109 short chain dehydrogenase; Provisional
Probab=83.08 E-value=5.8 Score=37.29 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=43.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
+..||+..+|.-|.++|......|.+++++...... ....+.++..|++++.+..+-.-.+.++.+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAA 75 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHH
Confidence 467888888999999999999999998777654211 223445667788887665432223444444
No 128
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.01 E-value=11 Score=33.02 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHc--CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hCCCEEE
Q 022547 136 DRIGYSMITDAEES--GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEII 206 (295)
Q Consensus 136 ~R~a~~~l~~a~~~--g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~-~~GA~Vv 206 (295)
-+|..+.+..+.+. +........++..+.||.|..+|......|.+++++ . ....+.+.+. .+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEEE
Confidence 46778888887765 222322345777888999999999999999987744 3 2345555443 3477644
No 129
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=82.87 E-value=12 Score=34.09 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=38.7
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~V 205 (295)
+...+.+|+..+|...+|..|.+++..|+.+|++.+++.... .+.+.++.+|++-
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~---~~~~~~~~~g~~~ 187 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD---AGVAELRALGIGP 187 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH---HHHHHHHhcCCCE
Confidence 345567777777777778999999999999999877665432 3444444556643
No 130
>PRK08703 short chain dehydrogenase; Provisional
Probab=82.87 E-value=16 Score=31.82 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=26.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
++.+|+.++|.-|.++|......|.+++++..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 47789999999999999998888998766654
No 131
>PRK08589 short chain dehydrogenase; Validated
Probab=82.78 E-value=6.7 Score=35.31 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=38.5
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
++..||+..+|--|+++|......|.+++++-.........+.++..|.++..+..
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHV 61 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEe
Confidence 34678888888899999999888999988876542112234455566766655543
No 132
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=82.73 E-value=10 Score=33.93 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=30.7
Q ss_pred EEEe-CCC---ccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCC
Q 022547 159 LVEP-TTG---NTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFG 202 (295)
Q Consensus 159 vv~a-SsG---N~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~G 202 (295)
+|++ +.| .+.+|||.+|++-|=+.+.++|+... ..-.+.|..+|
T Consensus 45 iVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~ 93 (218)
T PF07279_consen 45 IVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG 93 (218)
T ss_pred EEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc
Confidence 4544 444 36899999999999999999998543 23344444444
No 133
>PRK06139 short chain dehydrogenase; Provisional
Probab=82.72 E-value=5.2 Score=37.68 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=43.3
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCCCChHHHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~ 222 (295)
+..||+..+|--|+++|......|.+++++...... ....+.++..|+++..+..+..-.+.++.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~ 75 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALA 75 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHH
Confidence 467888888899999999999999998777653211 1223456677888765543322234444443
No 134
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=82.70 E-value=11 Score=32.62 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCeEEEEECC-CCCHHHHHHHHhCCCEEEEeCCCCChHHHHHH-HHHHHHcCCCeEEe--cCCCChHHHH
Q 022547 169 LGIAFVAAVKGYKLIVTMPA-STNLERRILLRAFGAEIILTDPEKGLRGALDK-AEEIVLNTPNAYMF--QQFDNMANLK 244 (295)
Q Consensus 169 ~AlA~aa~~~Gi~~~ivvp~-~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~-a~~~a~~~~~~~~~--~~~~n~~~~~ 244 (295)
..+.++++.+|.+..--++. +.-..-.+.....|..|.++++. .+.++. +..+.++.|+.-.+ ++|.++..
T Consensus 14 ~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~---~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~-- 88 (177)
T TIGR00696 14 IGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK---PDVLQQLKVKLIKEYPKLKIVGAFGPLEPEE-- 88 (177)
T ss_pred HHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCCEEEEECCCCChHH--
Confidence 67888899998764322221 11223344445667889999874 333333 45555666664333 33333221
Q ss_pred HHHHHHHHHHHHhhC-CCCCEEEEcCCch
Q 022547 245 IHFDSTGPEIWEDTL-GCVDIFVAAIGTG 272 (295)
Q Consensus 245 ~Gy~t~~~EI~~Ql~-~~~d~vv~pvGtG 272 (295)
-.+|.+++. ..+|.|+++.|+-
T Consensus 89 ------~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 89 ------RKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred ------HHHHHHHHHHcCCCEEEEEcCCc
Confidence 123444442 2689999998864
No 135
>PRK12743 oxidoreductase; Provisional
Probab=82.53 E-value=6.7 Score=34.82 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=39.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+.++|.-|.++|......|.+++++...+.. ....+.++..|.++..+..
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQL 59 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEc
Confidence 367888888999999999999999998777543322 2234556677888776654
No 136
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=82.53 E-value=10 Score=33.28 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=39.6
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~ 211 (295)
++.+|+..+|.-|.++|......|.+++++.... .....+.++.+|.++..+..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D 60 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTAD 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECC
Confidence 4778888889999999999999999877765432 233445566677776665543
No 137
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=82.29 E-value=16 Score=34.10 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=41.2
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
....+++++..+|.+ +|..|.+++..|+.+|++.++++. .+.++.+.++.+|++.++.
T Consensus 166 ~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 166 RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLD 223 (351)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEC
Confidence 445567777777765 688999999999999995444443 3556777777788876543
No 138
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.12 E-value=16 Score=34.24 Aligned_cols=73 Identities=23% Similarity=0.197 Sum_probs=52.9
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEE-CCCCCHHHHHHHHhCC-CEEEEeCCCCChHHHHHHHHHHHHcC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM-PASTNLERRILLRAFG-AEIILTDPEKGLRGALDKAEEIVLNT 228 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivv-p~~~~~~~~~~l~~~G-A~Vv~v~~~~~~~~a~~~a~~~a~~~ 228 (295)
|+..+||.+|+-.|+++|.-.+++|-+.++.- -.....+..+.++..| |+-..++-. +++|-.+.|.++.++.
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEV 112 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhc
Confidence 45778888888999999999999999654432 2244567777888777 444566654 5778777788777775
No 139
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=82.10 E-value=21 Score=34.92 Aligned_cols=56 Identities=23% Similarity=0.178 Sum_probs=37.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCCCC-CCCeEEEEeCCCccHHH--HHHHHHHcCCeEEEEE
Q 022547 128 MEPCRSVKDRIGYSMITDAEESGDIT-PGKTVLVEPTTGNTGLG--IAFVAAVKGYKLIVTM 186 (295)
Q Consensus 128 ~nptGS~K~R~a~~~l~~a~~~g~~~-~g~~~vv~aSsGN~g~A--lA~aa~~~Gi~~~ivv 186 (295)
-+|.|.- +.....|....++|.+. .++..||+..++..|+| +|.+. ..|.+++++.
T Consensus 15 ~hp~gc~--~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 15 AHPVGCE--ANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCHHHH--HHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 4677743 23456777788888873 44566777777767777 56666 6788877664
No 140
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.95 E-value=14 Score=34.24 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=39.8
Q ss_pred CCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 151 ~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+.+++..+|.. +|..|.+++..|+.+|.+++++.+ ...+++.++.+|++-++
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 466676766666 899999999999999998655533 34677777888986544
No 141
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=81.86 E-value=26 Score=31.02 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
+.+|+.++|.-|+++|......|.+++++-.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 4588888899999999998888988766543
No 142
>PRK08226 short chain dehydrogenase; Provisional
Probab=81.78 E-value=8.5 Score=34.14 Aligned_cols=55 Identities=25% Similarity=0.126 Sum_probs=37.4
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+.++|.-|.++|......|.+++++-...........+...|.++..+..
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVA 61 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEEC
Confidence 4678899999999999999999999977665432112223344445767655544
No 143
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=81.77 E-value=45 Score=31.11 Aligned_cols=54 Identities=35% Similarity=0.497 Sum_probs=38.7
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCC-eEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi-~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+...+++..+|. ++|..|.+++..|+.+|+ +++++. ....+...++.+|++-++
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~vi 227 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADATI 227 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCeEE
Confidence 444466677777 479999999999999999 554442 245677777888985443
No 144
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=81.50 E-value=42 Score=30.55 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcC----CCCEEEEeC
Q 022547 246 HFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN----KEIKARILL 295 (295)
Q Consensus 246 Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~----~~vkVigV~ 295 (295)
++. ...+++++. +++|.||+. +...+.|+..++++.+ .++.|+|+|
T Consensus 189 ~~~-~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D 238 (305)
T cd06324 189 AYE-QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVN 238 (305)
T ss_pred HHH-HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecC
Confidence 444 445666553 568988864 5677789999999876 368899986
No 145
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.41 E-value=9.7 Score=31.06 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=43.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC----HHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN----LERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~----~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
..||+.+++.-|+++|......|-..++++..+.. ......++..|.++..+..+....+.++.+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~ 70 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRAL 70 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccc
Confidence 56888889999999999988887766665554421 223455677889888776543333444443
No 146
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=81.39 E-value=6.8 Score=36.57 Aligned_cols=56 Identities=23% Similarity=0.168 Sum_probs=41.3
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
....+++|++.+|.. .|..|.+++..|+.+|.+++++.. ++.|++.++.+||+.++
T Consensus 159 ~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 159 LRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 345677887766665 477898989999999997544433 45688899999997554
No 147
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=81.22 E-value=15 Score=32.60 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=39.6
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+.++|.-|.++|......|.+++++-. .......+.++..|.++..+..+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~D 65 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTAD 65 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEECC
Confidence 47789999999999999999999998776532 22344455666667777655543
No 148
>PRK05872 short chain dehydrogenase; Provisional
Probab=81.02 E-value=15 Score=33.56 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=26.8
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
++..||+.++|.-|.++|......|.+++++-.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r 41 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDL 41 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 347788888899999999999999998766543
No 149
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=80.68 E-value=37 Score=29.55 Aligned_cols=55 Identities=36% Similarity=0.500 Sum_probs=39.8
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+.+.+++..+|...++ .|.+++..++.+|.+++++.+. +.+.+.++.+|++.++
T Consensus 129 ~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 183 (271)
T cd05188 129 AGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADHVI 183 (271)
T ss_pred ccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCceec
Confidence 33345666777777767 9999999999999877666443 4667777888876544
No 150
>PRK06114 short chain dehydrogenase; Provisional
Probab=80.67 E-value=15 Score=32.52 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=38.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|--|.++|......|.+++++...... ....+.++..|.++..+..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAA 65 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEc
Confidence 477888888889999999999999988877654321 2234456666777665544
No 151
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=80.59 E-value=13 Score=34.62 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=41.2
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
.+....+|++.+|. ++|..|.+....|+.+|.+.++++. .++.+++.++.+||+.++.
T Consensus 163 ~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 163 HQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVN 220 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEec
Confidence 33334466676665 5689999999999999996554443 3467888889999976543
No 152
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.39 E-value=10 Score=33.53 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=37.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+.++|..|.++|......|.+++++...... ......++..|.++..+..
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 66 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAF 66 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEc
Confidence 477889989999999999999999987665443211 1223445556777766644
No 153
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=79.85 E-value=43 Score=31.53 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=42.1
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+...+.+|+..+|. +.|..|.+++..|+.+|.+.++.+. .+..+.+.++.+|++-++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~v 233 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVD--INKDKFEKAKQLGATECI 233 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCCeec
Confidence 34556777777776 6789999999999999998555543 255778888889985333
No 154
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=79.79 E-value=15 Score=33.41 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=36.1
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+++.+|...+|..|.+++..|+.+|++++++.. ...+.+.++.+|++-++
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 196 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEVI 196 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEEE
Confidence 446667766799999999999999998665543 23566666777875443
No 155
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=79.76 E-value=11 Score=33.66 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=38.4
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+.++|.-|.++|......|.+++++-..... ......++..|++++.+..+
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCD 67 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 467899999999999999999999997766432211 12233455568777666543
No 156
>PRK05993 short chain dehydrogenase; Provisional
Probab=79.67 E-value=22 Score=32.07 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=39.3
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|.-|.++|......|.+++++... ..+.+.+...|.+++.++-
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 467888888999999999998899998877553 3455556666777766664
No 157
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=79.42 E-value=46 Score=29.71 Aligned_cols=122 Identities=11% Similarity=-0.013 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHH
Q 022547 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGAL 218 (295)
Q Consensus 139 a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~ 218 (295)
+..+.....+.|. ..+=|+..+=-..-++...++.++ ++.|=.-.-.+++..+.....||+.++.++- -.+-+
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~--~~ev~ 99 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL--NPEVA 99 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC--CHHHH
Confidence 4455555566664 233466677778889999999999 6666555556888899999999999999863 12333
Q ss_pred HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHH--------------hhC-CCCCEEEEcCCchH
Q 022547 219 DKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE--------------DTL-GCVDIFVAAIGTGG 273 (295)
Q Consensus 219 ~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~--------------Ql~-~~~d~vv~pvGtGg 273 (295)
+. +.+. +..++.+..++.-... -...|.+++. -+. +-++.-|+|+|+=+
T Consensus 100 ~~----a~~~-~ip~~PG~~TptEi~~-Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs 163 (211)
T COG0800 100 KA----ANRY-GIPYIPGVATPTEIMA-ALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVS 163 (211)
T ss_pred HH----HHhC-CCcccCCCCCHHHHHH-HHHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCC
Confidence 33 3333 6677777777655432 2233444332 222 24678888888644
No 158
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=79.38 E-value=27 Score=31.72 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=42.2
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
+.+.+++..+|...+|..|.+++..|+.+|.+.+++.. +..+.+.++.+|++.++.
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 55677778778777899999999999999998766433 346666677788864443
No 159
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=79.20 E-value=45 Score=30.77 Aligned_cols=59 Identities=27% Similarity=0.399 Sum_probs=41.4
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
.+...+++|++.+|. ++|-.|.+++..|+.+|.+-++++. ....+++.++.+|++.++.
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i~ 214 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVIN 214 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEc
Confidence 334446777777776 5688999999999999998333332 3456777888889865543
No 160
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=79.06 E-value=7.2 Score=32.85 Aligned_cols=51 Identities=20% Similarity=0.228 Sum_probs=38.6
Q ss_pred CccHHHHHHHHHHcCCeEEEEECCC--CCH--HHH----HHHHhCCCEEEEeCCCCChHHHH
Q 022547 165 GNTGLGIAFVAAVKGYKLIVTMPAS--TNL--ERR----ILLRAFGAEIILTDPEKGLRGAL 218 (295)
Q Consensus 165 GN~g~AlA~aa~~~Gi~~~ivvp~~--~~~--~~~----~~l~~~GA~Vv~v~~~~~~~~a~ 218 (295)
+|.+.+++..+..+|+.++++.|+. .+. ..+ +..+..|.++.+++ +.++++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~---~~~e~l 71 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD---DIEEAL 71 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES---SHHHHH
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe---CHHHhc
Confidence 7999999999999999999999987 555 233 23344599999885 345544
No 161
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=79.04 E-value=10 Score=35.68 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=58.3
Q ss_pred eEEEEeCCCCC-----CCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc--cHHHHHHHHHHcCCeEEEEECCCCCH
Q 022547 120 NVAAKLESMEP-----CRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGN--TGLGIAFVAAVKGYKLIVTMPASTNL 192 (295)
Q Consensus 120 ~I~~K~E~~np-----tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN--~g~AlA~aa~~~Gi~~~ivvp~~~~~ 192 (295)
+-++|.++--| |-+.---.|+-|+.+-.+... |+ .|| --++| -|.++--.|+.+||+.+=++.+....
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~---GD-~vI-QNganS~VG~~ViQlaka~GiktinvVRdR~~i 198 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNK---GD-SVI-QNGANSGVGQAVIQLAKALGIKTINVVRDRPNI 198 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCC---CC-eee-ecCcccHHHHHHHHHHHHhCcceEEEeecCccH
Confidence 46667766322 334445577788888776443 43 333 33444 56677778999999999999886554
Q ss_pred H-HHHHHHhCCCEEEEeCC
Q 022547 193 E-RRILLRAFGAEIILTDP 210 (295)
Q Consensus 193 ~-~~~~l~~~GA~Vv~v~~ 210 (295)
+ -.+.++.+||+-++++.
T Consensus 199 eel~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 199 EELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHHcCCceEecHH
Confidence 4 45688999999888765
No 162
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=78.92 E-value=28 Score=31.77 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=41.5
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
..+.+.+|+..+|....|..|.+++..|+.+|++++.+.+ ...+...++.+|++-++
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 190 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQVI 190 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEEE
Confidence 3456677777777777899999999999999999766543 34566666777874433
No 163
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=78.89 E-value=13 Score=33.42 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=38.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~-~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|..|.++|......|.+++++..... .......++..|.++..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 46788888899999999999999998877765421 12223445556777766554
No 164
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.84 E-value=16 Score=31.89 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=39.6
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~~ 211 (295)
++.+|+..+|.-|+++|......|.+++++...+.. ....+.++..|.++..+..+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 467899999999999999999999987765432221 22334566678887776554
No 165
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.76 E-value=13 Score=32.87 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=37.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|.-|.++|......|.+++++...... ......++..|.++..+..
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAG 62 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 467888888999999999999999987776543211 1123445666777766544
No 166
>PRK06182 short chain dehydrogenase; Validated
Probab=78.75 E-value=27 Score=31.20 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=39.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|.-|.++|......|.+++++... ..+++.+...+.+++.++-
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv 55 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDV 55 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeC
Confidence 467888888999999999998999998877553 3455555556777776664
No 167
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.74 E-value=12 Score=32.49 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=28.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
++.+|+.++|..|.+++..+...|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 477899999999999999999999998887664
No 168
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=78.71 E-value=16 Score=31.59 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=39.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~~ 211 (295)
++.+|+.++|..|.+++......|.+++++...... ......++..+.++..+..+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcC
Confidence 367889999999999999988899997666654321 12233455567787776543
No 169
>PRK06128 oxidoreductase; Provisional
Probab=78.69 E-value=19 Score=32.89 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=40.1
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC---CHHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~---~~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..||+.++|--|.++|......|.++++...... .......++..|.+++.+..+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 114 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGD 114 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecC
Confidence 36789999999999999999999999877653221 123345666778887766543
No 170
>PRK12937 short chain dehydrogenase; Provisional
Probab=78.64 E-value=16 Score=31.76 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=40.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+.++|..|.++|......|.+++++...... ....+.++.+|.++..+..+
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQAD 63 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 467888889999999999999999988776543321 12334556678888776543
No 171
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.56 E-value=13 Score=33.71 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=37.6
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..||+.++|.-|.++|......|.+++++...... ....+.++..|.++..+..
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~ 62 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMC 62 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeC
Confidence 467899989999999999999999987665433211 1223345556877765544
No 172
>PRK12939 short chain dehydrogenase; Provisional
Probab=78.48 E-value=13 Score=32.34 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=41.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~-~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
+..+|+.++|.-|.++|......|.+++++..... .......++..|+++..+..+..-.+.++.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 46788888999999999999999998776643211 1122334555677766554432223344433
No 173
>PRK06172 short chain dehydrogenase; Provisional
Probab=78.46 E-value=13 Score=32.69 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=39.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 477889999999999999999999997777654221 2224455667777765544
No 174
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.34 E-value=31 Score=31.04 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=40.1
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+.+|+..+|...+|..|.++...|+.+|++++.+... ..+.+.++.+|++-++
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 445667777777777999999999999999996655442 3556666777775443
No 175
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=78.24 E-value=29 Score=31.20 Aligned_cols=56 Identities=34% Similarity=0.366 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK-LIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~-~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+...+++++..+|.+ +|-.|.+++..|+.+|++ ++++.. .+.+...++.+|++-++
T Consensus 123 ~~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~~ 179 (312)
T cd08269 123 RRGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIAIDR---RPARLALARELGATEVV 179 (312)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhCCceEe
Confidence 355567777777774 678999999999999999 544422 24566677778875443
No 176
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=78.18 E-value=16 Score=34.55 Aligned_cols=57 Identities=28% Similarity=0.390 Sum_probs=41.0
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+...+++|++.+|. ++|..|.+++..|+.+|.+.++.+. .+..+++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 34556777777776 5799999999999999995344433 244677777888986544
No 177
>PRK06194 hypothetical protein; Provisional
Probab=77.95 E-value=15 Score=33.00 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=38.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..||+.++|.-|.++|......|.+++++-..... ......+...|.+++.+..+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTD 63 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECC
Confidence 467899999999999999999999987766443211 22233444557787666543
No 178
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=77.87 E-value=12 Score=34.56 Aligned_cols=52 Identities=31% Similarity=0.331 Sum_probs=38.8
Q ss_pred CCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 153 ~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+|++.+|.+ +|..|.++...|+.+|.+.++++ +....+.+.++.+|++.++
T Consensus 162 ~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLITG-AGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 4566777754 68899999999999999644554 3455778888889987554
No 179
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=77.65 E-value=16 Score=31.87 Aligned_cols=66 Identities=24% Similarity=0.237 Sum_probs=43.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
++.+|+.++|.-|.+++......|.+++++...... ....+.++..|.++..+..+..-.+.++.+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAA 73 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 467889999999999999998999988777654211 233445566677776665432223334333
No 180
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.60 E-value=15 Score=31.99 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=38.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+.++|..|.+++......|.+++++...... ......++..|.+++.+..+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATAD 64 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECC
Confidence 367888888999999999988899987777654221 12233455567777666543
No 181
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.56 E-value=15 Score=33.84 Aligned_cols=56 Identities=23% Similarity=0.186 Sum_probs=39.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~--~~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..||+.++|.-|.++|......|.+++++..... .....+.++..|.+++.+..+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 47788888899999999999889998776543221 123345567778888776654
No 182
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=77.54 E-value=49 Score=28.98 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCC----CCEEEEeC
Q 022547 251 GPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK----EIKARILL 295 (295)
Q Consensus 251 ~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~----~vkVigV~ 295 (295)
..+++++.+..+|.|++. +...+.|+..++++.+. ++.|+|+|
T Consensus 168 ~~~~l~~~~~~~~ai~~~--~d~~A~g~~~al~~~g~~ip~dv~v~g~d 214 (264)
T cd06274 168 MAELLARLGRLPRALFTT--SYTLLEGVLRFLRERPGLAPSDLRIATFD 214 (264)
T ss_pred HHHHHccCCCCCcEEEEc--ChHHHHHHHHHHHHcCCCCCcceEEEEeC
Confidence 345554432458988866 56778899999998763 58899886
No 183
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.41 E-value=12 Score=35.77 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=46.6
Q ss_pred HHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 145 ~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
.+++...++||+. |...+-|-.|....-+|+.+|.+++.+- .++.|++..+.+||+.++...
T Consensus 157 ~alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 157 RALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred eehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEEEcC
Confidence 3456666788866 5556666677777778888998877773 467899999999999888754
No 184
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=77.40 E-value=3.9 Score=34.19 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=31.9
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA 200 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~ 200 (295)
|...++||+|.|+|......|.+++++.++. +..+.++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~ 40 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINE 40 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHH
Confidence 5678999999999999999999999998754 55555544
No 185
>PRK08643 acetoin reductase; Validated
Probab=77.31 E-value=16 Score=32.11 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=38.1
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~-~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..||+.++|.-|.++|......|.+++++....... .....++..|.++..+..+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 59 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKAD 59 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3678888889999999999999999877765432211 2223445567777666543
No 186
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.30 E-value=13 Score=35.44 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=44.8
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+...-+.||+..-|..-+| .|.---.+|+.+|++++++-.. +..|.+.++.+||+..+...
T Consensus 174 Lk~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hHHcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 3333356887765555556 8877778899999999888442 34778899999999887765
No 187
>PRK07454 short chain dehydrogenase; Provisional
Probab=77.29 E-value=15 Score=32.06 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=37.1
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|..|.+++......|.+++++...... ....+.++..+.++..+..
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSI 62 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 367888888999999999999999988877653211 1222334455666655544
No 188
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.27 E-value=12 Score=34.23 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=36.7
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
..+|+.++|.-|.++|......|.+++++...... ....+.+...|.++..+..
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~ 96 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPC 96 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 67888888999999999999999998877654211 1222344445666655544
No 189
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=77.11 E-value=14 Score=32.43 Aligned_cols=47 Identities=28% Similarity=0.317 Sum_probs=23.9
Q ss_pred CCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCC
Q 022547 164 TGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 164 sGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.-|+++|....+.|.++++.-..... ....+..+.+|.+++.++-
T Consensus 5 s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~ 53 (241)
T PF13561_consen 5 SSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDL 53 (241)
T ss_dssp TSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCT
T ss_pred CCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecC
Confidence 3456667777666677766665443221 1112233445666544443
No 190
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=77.09 E-value=8.2 Score=28.10 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=37.9
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCCC-----CHH----HHHHHHhCCCEEEE
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-----NLE----RRILLRAFGAEIIL 207 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~-----~~~----~~~~l~~~GA~Vv~ 207 (295)
++..++|..|.-+|.+.+.+|.+++++..... ++. -.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 67789999999999999999999999987532 222 34566777877764
No 191
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=77.02 E-value=14 Score=35.28 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=42.7
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
..+.+++..+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..++-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4466777777777779999999999999999875553 2456778888899876553
No 192
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=76.94 E-value=5.4 Score=37.90 Aligned_cols=86 Identities=23% Similarity=0.247 Sum_probs=52.0
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCe--EEEEECCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHcCCCe-E
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYK--LIVTMPASTNLERRILLRAFGAEIILTDPE-KGLRGALDKAEEIVLNTPNA-Y 232 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~--~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~-~~~~~a~~~a~~~a~~~~~~-~ 232 (295)
..++..++|..|.-+|+.+ +|++ -.|++|.-+.......+...|+++++++-+ .++.=..+...+...++... +
T Consensus 41 ~~~~~~~sgt~Al~~al~~--l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~ 118 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRA--LGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAIL 118 (363)
T ss_dssp SEEEEESSHHHHHHHHHHH--TTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEE
T ss_pred CeEEEeCChhHHHHHHHHh--cCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEE
Confidence 3478899999988888887 5554 688889888889999999999999999864 22211122222333332233 4
Q ss_pred EecCCCChHHHH
Q 022547 233 MFQQFDNMANLK 244 (295)
Q Consensus 233 ~~~~~~n~~~~~ 244 (295)
.++.+.++..+.
T Consensus 119 ~~h~~G~~~d~~ 130 (363)
T PF01041_consen 119 VVHLFGNPADMD 130 (363)
T ss_dssp EE-GGGB---HH
T ss_pred EecCCCCcccHH
Confidence 456666665543
No 193
>PRK07890 short chain dehydrogenase; Provisional
Probab=76.90 E-value=15 Score=32.25 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=37.7
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+++.+|+.++|.-|+++|......|.+++++...... ......++..|.++..+..
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPT 61 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEec
Confidence 3477899999999999999999999987776543211 1122334445666655544
No 194
>PRK08862 short chain dehydrogenase; Provisional
Probab=76.87 E-value=14 Score=32.61 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=36.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTD 209 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~ 209 (295)
+..+|+..++.-|+++|......|.+++++-..... ....+.++..|.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 467888888889999999999999997776443211 122344566677766543
No 195
>PRK06181 short chain dehydrogenase; Provisional
Probab=76.82 E-value=14 Score=32.81 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=37.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+.+|+..+|.-|.+++......|.+++++...... ....+.++..|.++..+..
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 57 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPT 57 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 56888888999999999999999988777654211 1223345556777765544
No 196
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=76.51 E-value=19 Score=30.65 Aligned_cols=75 Identities=24% Similarity=0.266 Sum_probs=55.7
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC---------CCCHHHHHHHHh
Q 022547 130 PCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA---------STNLERRILLRA 200 (295)
Q Consensus 130 ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~---------~~~~~~~~~l~~ 200 (295)
|+--+-++.....+.+|.+.|. +..||..++|.+++-++-+..- .+++++|.-. .++.+-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4446778899999999999886 4567777779887776655443 3888777542 357788889999
Q ss_pred CCCEEEEeC
Q 022547 201 FGAEIILTD 209 (295)
Q Consensus 201 ~GA~Vv~v~ 209 (295)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999987644
No 197
>PRK07806 short chain dehydrogenase; Provisional
Probab=76.48 E-value=22 Score=31.13 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=37.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+..+|.-|.+++......|.+++++...... ......++..|.++..+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGA 63 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEc
Confidence 467888888999999999998899998877654221 1112334556777665544
No 198
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.47 E-value=17 Score=31.82 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=39.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~-~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+..+|..|.++|..-...|.+++++....... .....++..|.++..+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM 60 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 4678999999999999999888999988876643222 223445556777665544
No 199
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=76.42 E-value=54 Score=30.16 Aligned_cols=54 Identities=33% Similarity=0.384 Sum_probs=38.9
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
..+.+++..+|. ++|..|.+++..|+.+|+..++++ .....+...++.+|+.++
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~~ 216 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEPI 216 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeEE
Confidence 345566677777 578999999999999998434444 334577777888998643
No 200
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.35 E-value=15 Score=31.93 Aligned_cols=55 Identities=22% Similarity=0.123 Sum_probs=37.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~-~~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+.++|.-|.++|......|.+++++..... .....+.++..|+++..+..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 46788888899999999999999998766654321 12233445566887765544
No 201
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.25 E-value=15 Score=32.37 Aligned_cols=55 Identities=11% Similarity=0.101 Sum_probs=36.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|.-|.++|......|.+++++...... ....+.++..|.++..+..
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 65 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCC 65 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 467888888999999999999999987766443211 1223344556777665543
No 202
>PRK12828 short chain dehydrogenase; Provisional
Probab=76.20 E-value=27 Score=29.98 Aligned_cols=56 Identities=20% Similarity=0.082 Sum_probs=40.1
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+++.+|+.++|--|.++|......|.+++++...... ......+...+.+++..+-
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 3477899999999999999988889997777664322 2233445566777776654
No 203
>PLN02827 Alcohol dehydrogenase-like
Probab=76.18 E-value=73 Score=30.32 Aligned_cols=57 Identities=25% Similarity=0.414 Sum_probs=42.1
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+.+.+|++.+|. ++|--|.+++..|+.+|.+.++.+.. .+.+.+.++.+|++-++
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 34557778776666 46889999999999999875555432 45788888999997554
No 204
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.17 E-value=17 Score=31.99 Aligned_cols=55 Identities=22% Similarity=0.133 Sum_probs=37.1
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+..+|.-|.+++......|.+++++...... ....+.+...|.++..+..
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 64 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALAC 64 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 467899889999999999999999988777543211 1223344455766655543
No 205
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=76.09 E-value=16 Score=31.96 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=38.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~--~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|.-|.++|......|.+++++..... .......++..|++++....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEG 60 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEc
Confidence 46789999999999999999999998766543221 11234455567888775544
No 206
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=76.02 E-value=15 Score=31.99 Aligned_cols=56 Identities=21% Similarity=0.084 Sum_probs=38.1
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+.++|.-|.++|......|.+++++...... ......++..+.++..+..+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d 60 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACD 60 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 467899999999999999999999987776543211 11223345556666665543
No 207
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=75.97 E-value=36 Score=30.48 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=41.1
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+.+.+.+++..+|...+|..|.+++..++.+|++++++... ..+.+.++.+|++.++
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGADIAI 189 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 345667777787887778999999999999999987665442 3444455666764443
No 208
>PRK08278 short chain dehydrogenase; Provisional
Probab=75.92 E-value=22 Score=31.99 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=39.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--------~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+..+|--|.++|......|.+++++...... ....+.++..|.+++.+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVG 69 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEe
Confidence 467888888999999999999999998887754321 1122345667877766544
No 209
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=75.56 E-value=18 Score=32.94 Aligned_cols=51 Identities=27% Similarity=0.358 Sum_probs=38.8
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 154 ~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+++..+|...+|..|.+++..|+.+|.+++++.. .+++.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4556677777799999999999999998666543 44677788889985443
No 210
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=75.47 E-value=20 Score=32.75 Aligned_cols=57 Identities=37% Similarity=0.466 Sum_probs=42.2
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+.+.+.++++.+|. +.|-.|.+++..|+.+|.+++++ . ....+.+.++.+|++.+.
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~-~--~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV-G--RHSEKLALARRLGVETVL 204 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE-c--CCHHHHHHHHHcCCcEEe
Confidence 355667777777777 47889999999999999995444 2 235777888889986543
No 211
>PRK09134 short chain dehydrogenase; Provisional
Probab=75.47 E-value=23 Score=31.33 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=38.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~--~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+..+|.-|..+|......|.+++++...+... .-...++..|.++..+..
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQA 66 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4678999999999999999999999887765432211 122334445777766544
No 212
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=75.44 E-value=17 Score=32.10 Aligned_cols=56 Identities=23% Similarity=0.193 Sum_probs=37.6
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAF 67 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 3477888888999999999888899987777654211 1223345556766655543
No 213
>PRK08303 short chain dehydrogenase; Provisional
Probab=75.43 E-value=20 Score=33.27 Aligned_cols=55 Identities=29% Similarity=0.253 Sum_probs=37.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC-----------CHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-----------NLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~-----------~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..||+.+++--|.++|......|.+++++..... -....+.++..|.+++.+..
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQV 74 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEc
Confidence 46788888888999999999889998877655321 11223455667777665543
No 214
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=75.34 E-value=59 Score=32.54 Aligned_cols=118 Identities=11% Similarity=0.063 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCeEEEEE-----------CCCCCHHHHHHHHhCCCEEEEeCCCC----ChHHHHHHHHHHHHcCCCeE--
Q 022547 170 GIAFVAAVKGYKLIVTM-----------PASTNLERRILLRAFGAEIILTDPEK----GLRGALDKAEEIVLNTPNAY-- 232 (295)
Q Consensus 170 AlA~aa~~~Gi~~~ivv-----------p~~~~~~~~~~l~~~GA~Vv~v~~~~----~~~~a~~~a~~~a~~~~~~~-- 232 (295)
-+..+|+..|+++++.. |..............|++.+....+. +-.++++...+++++-...+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 35667889999988765 23345566667777899988876532 12455555444443221111
Q ss_pred ---EecCCC-C---hHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEe
Q 022547 233 ---MFQQFD-N---MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARIL 294 (295)
Q Consensus 233 ---~~~~~~-n---~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV 294 (295)
|-.... . ..... .....+.++.+.+ ..+.||+.+-+|.++.-++++ .|.+.|+++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~-~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr~----rp~~PIiAv 402 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITE-AIALSAVEAAEKL--DAKAIVVLTESGRTARLLSKY----RPNAPIIAV 402 (473)
T ss_pred hhhhhhhhcccccCCChHH-HHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHhh----CCCCCEEEE
Confidence 101100 0 01111 3344455666665 578999999999999887765 688889886
No 215
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=75.20 E-value=19 Score=31.79 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=37.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..||+.++|.-|.++|......|.+++++...... ......++..|.++..+..
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPF 65 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEec
Confidence 467899999999999999999999987776443111 1223344555767665544
No 216
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=75.06 E-value=40 Score=29.84 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
+.+.+++|+..+|...+|..|.+++..|+.+|++.+++.+. ..+.+.++.+|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 45667788787777778899999999999999986665443 3556666677764
No 217
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=75.05 E-value=32 Score=30.95 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhC---CCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHH
Q 022547 168 GLGIAFVAAVKGYKLIVTMPASTNLERRILLRAF---GAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLK 244 (295)
Q Consensus 168 g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~---GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~ 244 (295)
|-++|.+.+.+|+++.++-++.........+..+ |.+|.+..+... ++.+ ..++.++.-....+.-|.+....
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~-r~~l--~~~L~~~G~~v~~~~~Y~~~~~~- 161 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG-REVL--EEKLEERGAEVREVEVYRTEPPP- 161 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc-hHHH--HHHHHhCCCEEEEEeeeeecCCC-
Confidence 4688999999999988776656677777777776 678877766432 2222 22333332234445566553322
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCC----CCEEEEe
Q 022547 245 IHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK----EIKARIL 294 (295)
Q Consensus 245 ~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~----~vkVigV 294 (295)
+. ...++.......+|.|+.. ++.++..+...+...+. +.+|+.|
T Consensus 162 --~~-~~~~~~~~~~~~~d~v~ft--S~~~v~~~~~~~~~~~~~~~~~~~v~~I 210 (248)
T COG1587 162 --LD-EATLIELLKLGEVDAVVFT--SSSAVRALLALAPESGIEFLERKRVASI 210 (248)
T ss_pred --cc-HHHHHHHHHhCCCCEEEEe--CHHHHHHHHHHccccchhHhhCceEEEe
Confidence 22 1111111112478999887 45777888887776654 3566554
No 218
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=75.00 E-value=18 Score=31.57 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=42.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
+..+|+.++|--|.++|......|.+++++...... ......++..|.++..+..+....+.++.+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 74 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRL 74 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 477899989999999999888899987765432211 122344556688887665543333334333
No 219
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=74.89 E-value=21 Score=30.81 Aligned_cols=55 Identities=27% Similarity=0.236 Sum_probs=39.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~-~~~~~l~~~GA~Vv~v~~ 210 (295)
++.||+..+|..|..++......|.+++++....... .....++..|.++..+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVF 61 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEc
Confidence 4678899999999999999888999976665543222 224445667888776554
No 220
>PRK07814 short chain dehydrogenase; Provisional
Probab=74.65 E-value=18 Score=32.26 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=40.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
++.+|+.++|--|.++|......|.+++++...... ......++..|.++..+..+..-.+.++.+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 77 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGL 77 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 477899999999999999988899988777553211 112233444566665543322223444433
No 221
>PRK07677 short chain dehydrogenase; Provisional
Probab=74.61 E-value=19 Score=31.71 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=36.3
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+..+|.-|.++|......|.+++++...... ......++..+.+++.+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQM 57 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 367888888999999999999999987666443211 1222334445666665543
No 222
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=74.29 E-value=21 Score=33.12 Aligned_cols=53 Identities=30% Similarity=0.350 Sum_probs=39.3
Q ss_pred CCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 152 ~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.++++.+|.+ +|-.|.+++..|+.+|.+.++++ +.++.+.+.++.+|++.++
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v 211 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVV 211 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEE
Confidence 45666777754 58889999999999999855555 3466888888888986443
No 223
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=74.27 E-value=21 Score=32.77 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=37.2
Q ss_pred eEEEE-eCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVE-PTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~-aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
..++. ..+|..|.++...|+.+|.+++++.+ +..+.+.++.+|++-++...
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~~ 196 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNSS 196 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEECC
Confidence 44454 67788999999999999998655433 45778888889997655443
No 224
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=74.04 E-value=34 Score=31.49 Aligned_cols=53 Identities=38% Similarity=0.544 Sum_probs=39.0
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
....+.+++..+|. ++|..|.+++..|+.+|++++++.. +.++...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 34556777777776 5678899999999999999766643 35666677777764
No 225
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=74.02 E-value=19 Score=31.76 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=41.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCCCChHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDK 220 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~ 220 (295)
+..+|+.++|.-|.++|......|.+++++...... +.....++..|.++..+..+..-.+.++.
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~ 78 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIER 78 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 467888888999999999888899987666543211 11233445567777666554333344433
No 226
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=73.98 E-value=44 Score=30.45 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=39.5
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-CCCEEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIIL 207 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~-~GA~Vv~ 207 (295)
.+.+.+++..+|...+|-.|.+++..|+.+|.+++++.+ ...+...++. +|++-++
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~~~ 196 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDAAI 196 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCceEE
Confidence 345666767777776799999999999999998665543 3355666655 7775333
No 227
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=73.96 E-value=16 Score=34.46 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=57.8
Q ss_pred eccccccCCCCeEEEEeCCC-CCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 109 YLNKVTEGCVGNVAAKLESM-EPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 109 ~l~~l~~~~g~~I~~K~E~~-nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
.+..|++..++.||==+-+. +|+-..-|. +.--+..|.+. |.+.+...-+.|.+.++-.+|..+|+++.|..|
T Consensus 112 ~ve~lA~~s~VPViNgLtD~~HP~Q~LADl-----~Ti~E~~g~l~-g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~P 185 (310)
T COG0078 112 TLEELAKYSGVPVINGLTDEFHPCQALADL-----MTIKEHFGSLK-GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATP 185 (310)
T ss_pred HHHHHHHhCCCceEcccccccCcHHHHHHH-----HHHHHhcCccc-CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECC
Confidence 34566666666666444333 566422221 11123344433 334445555569999999999999999999999
Q ss_pred CCCCH--HHHHH----HHhCCCEEEEeCC
Q 022547 188 ASTNL--ERRIL----LRAFGAEIILTDP 210 (295)
Q Consensus 188 ~~~~~--~~~~~----l~~~GA~Vv~v~~ 210 (295)
+...+ .-+.. .+.-|++|.++..
T Consensus 186 k~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 186 KGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred CcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 86543 22222 2334889988874
No 228
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=73.94 E-value=43 Score=30.29 Aligned_cols=57 Identities=26% Similarity=0.429 Sum_probs=40.7
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
.+.+.++++...+|...+|..|.+++..|+.+|++++++.+ ...+.+.++.+|++-+
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 191 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADVA 191 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 34556677778778777899999999999999998655543 2345555666777533
No 229
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=73.90 E-value=40 Score=30.06 Aligned_cols=55 Identities=29% Similarity=0.412 Sum_probs=40.0
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+.+++..+|...+|..|.+++..++.+|.++++..+. ..+.+.++.+|++-++
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 194 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAVF 194 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEEE
Confidence 556667777787778999999999999999986665442 3555666667775443
No 230
>PRK06949 short chain dehydrogenase; Provisional
Probab=73.70 E-value=17 Score=31.90 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=28.4
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+++.+|+.++|.-|.++|......|.+++++...
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3577888989999999999999999987776553
No 231
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=73.44 E-value=38 Score=31.01 Aligned_cols=54 Identities=31% Similarity=0.436 Sum_probs=40.2
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
.+.+.+++..+|.+ +|..|.+++..|+.+|+++++ +..+....+...++.+|++
T Consensus 159 ~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 34566777777754 689999999999999999543 3333446778888889985
No 232
>PRK06701 short chain dehydrogenase; Provisional
Probab=73.38 E-value=29 Score=31.66 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=39.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~~ 211 (295)
..+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..+
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 104 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGD 104 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEcc
Confidence 67888888999999999999999998777654322 22334556668777665543
No 233
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.36 E-value=25 Score=30.81 Aligned_cols=54 Identities=30% Similarity=0.413 Sum_probs=37.9
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~ 210 (295)
..+|+.++|.-|.++|..-...|.+++++.....+ ....+.++..+.++..+..
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPA 59 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEe
Confidence 56888999999999999988899988777643221 2234445556777766544
No 234
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=73.32 E-value=48 Score=30.22 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=40.2
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
.+.+.+++..+|...+|-.|.+++..|+.+|.+++++.. +..+...++.+|++-+
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 188 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRP 188 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceE
Confidence 345677778888887899999999999999998666543 3345556666776443
No 235
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=73.24 E-value=27 Score=31.68 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=38.7
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~V 205 (295)
.+.+.+++..+|...+|..|.+++..|+.+|.+.+++.... .+.+.++.+|++-
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~~ 186 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGADE 186 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCCCE
Confidence 34456777777777778899999999999999977665532 4455556667643
No 236
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=73.10 E-value=13 Score=35.43 Aligned_cols=55 Identities=25% Similarity=0.378 Sum_probs=42.4
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
..+.+++..+|...+|..|.+++..|+.+|.+.+++.+ +..+.+.++.+|++.++
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~---s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVS---SEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 34566767777766799999999999999999766543 55788888889986544
No 237
>PRK06500 short chain dehydrogenase; Provisional
Probab=73.09 E-value=27 Score=30.39 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=35.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHH-HHHhCCCEEEEeC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRI-LLRAFGAEIILTD 209 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~-~l~~~GA~Vv~v~ 209 (295)
+..+|+..+|..|.++|......|.+++++... ..+.. ..+.+|.++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEE
Confidence 477899999999999999999999987666442 23322 3344577765543
No 238
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=72.99 E-value=26 Score=32.31 Aligned_cols=66 Identities=26% Similarity=0.326 Sum_probs=44.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHH-HHHH-HhCCCEEEEeCCCCChHHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER-RILL-RAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~-~~~l-~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
++.|||..|+.-|.++|...+..|.+++++......-.. .+.+ +.+|.+|.+..-+..-.+.++..
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l 74 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERL 74 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHH
Confidence 477999999999999999999999999999886432221 2223 34577776666543223444443
No 239
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=72.84 E-value=29 Score=30.71 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=38.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|.-|.++|......|.+++++.....+ ....+.++..|.++..+..
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 64 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKG 64 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 477889999999999999999999988776554322 1223455566877765543
No 240
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=72.64 E-value=30 Score=32.57 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=40.7
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
.+.+++++..+|. ++|..|.+++..|+.+|.+.++.+.. ...|...++.+|++.++.
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVIN 237 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEec
Confidence 4556677777776 56899999999999999975544432 456777777788764443
No 241
>PRK12744 short chain dehydrogenase; Provisional
Probab=72.55 E-value=22 Score=31.42 Aligned_cols=55 Identities=27% Similarity=0.208 Sum_probs=37.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC-CCH----HHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNL----ERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~-~~~----~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+..+|.-|.++|......|.+++++.... ... ...+.++..|.++..+..
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 68 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQA 68 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEec
Confidence 4678888889999999999988999966665321 111 223345556777765544
No 242
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=72.53 E-value=24 Score=30.88 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=37.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+.+|+.++|.-|.++|......|.+++++...... ....+.++..|.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKL 56 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46888888999999999999999987766543211 1233455666877766554
No 243
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=72.46 E-value=48 Score=29.39 Aligned_cols=56 Identities=34% Similarity=0.459 Sum_probs=40.2
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+.+.+++..+|...+|..|.+++..|+.+|.+++++.. +..+.+.++.+|++-++
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGADHVI 186 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCCEEE
Confidence 455667777777766799999999999999998665532 34566666777775443
No 244
>PRK14030 glutamate dehydrogenase; Provisional
Probab=72.15 E-value=19 Score=35.68 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEE--------EECCCCCHHH
Q 022547 135 KDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV--------TMPASTNLER 194 (295)
Q Consensus 135 K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~i--------vvp~~~~~~~ 194 (295)
--||..+.+..+.+..-+.....+|+.-+.||-|..+|.....+|.+++. +-|+..+..+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH
Confidence 35788888887765443344446688899999999999999999999988 4566677666
No 245
>PRK08265 short chain dehydrogenase; Provisional
Probab=71.95 E-value=29 Score=30.87 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=35.6
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|--|.++|......|.+++++-... ....+..+..|.++..+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~ 59 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIAT 59 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEe
Confidence 4678888889999999999999999877764432 1122233445766655544
No 246
>PRK07791 short chain dehydrogenase; Provisional
Probab=71.86 E-value=26 Score=31.88 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=37.7
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC----------CCHHHHHHHHhCCCEEEEeCC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS----------TNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~----------~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
++..||+..++.-|.++|......|.+++++.... ......+.++..|.++..+..
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 71 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGD 71 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeC
Confidence 34778888888899999999999999877764321 111223445556777765543
No 247
>PRK06138 short chain dehydrogenase; Provisional
Probab=71.79 E-value=27 Score=30.49 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=36.1
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+.++|-.|.++|......|.+++++...... ......++ .|.++..+..
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~ 60 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQG 60 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEc
Confidence 467899999999999999888889887766543211 11222333 4776665544
No 248
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=71.65 E-value=29 Score=30.81 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=35.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-CCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~-~GA~Vv~v~~ 210 (295)
+..+|+..+|.-|.++|......|.+++++-.. ..+.+.+.. .|.++..+..
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~~ 58 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVEG 58 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEEe
Confidence 477888888999999999999999997776432 234444433 4656655543
No 249
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=71.58 E-value=24 Score=31.18 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=37.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|.-|.++|......|.+++++...... ......++..|.++..+..
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 67 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRC 67 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 477888888999999999999999988776543211 1122344556777665543
No 250
>PRK06101 short chain dehydrogenase; Provisional
Probab=71.25 E-value=28 Score=30.44 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=33.9
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
..+|+.++|.-|.++|..-...|.+++++... ..+.+.+...+.++..
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~ 50 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFT 50 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeE
Confidence 56888989999999999988899997776553 3455555444434433
No 251
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=71.17 E-value=21 Score=30.28 Aligned_cols=68 Identities=19% Similarity=0.120 Sum_probs=43.0
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC-----CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHH
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-----TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~-----~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~ 224 (295)
+.||+.+.|..|..+|..-...|-.-+|++..+ .....++.++..|++|.....+-.-.+.++.+.+.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~ 74 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQ 74 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHH
Confidence 457888889999999988777775555555433 22356788899999998876543334445554433
No 252
>PRK05717 oxidoreductase; Validated
Probab=71.16 E-value=32 Score=30.34 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=36.2
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
|++.+|+.++|.-|.++|......|.+++++-... .......+..+.+++.+..
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~ 63 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAM 63 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEc
Confidence 34778999999999999999999999877763321 1122233445666655544
No 253
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=71.13 E-value=49 Score=26.61 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=49.7
Q ss_pred HHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHH
Q 022547 171 IAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDS 249 (295)
Q Consensus 171 lA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t 249 (295)
|+..++..+.+.+|+...... ..........+.+++.=.+ +++.+.+..|.+.+.+.-....+-+.+-|.... .+-.
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l~ 79 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDLE 79 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHHH
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHHH
Confidence 355667778888887765433 3333335555677666554 478999998877774433456666667666543 2222
Q ss_pred HHHHHHHhhCCCCCEEEEcCCchH
Q 022547 250 TGPEIWEDTLGCVDIFVAAIGTGG 273 (295)
Q Consensus 250 ~~~EI~~Ql~~~~d~vv~pvGtGg 273 (295)
+.++.+ ...|.|+.|+--||
T Consensus 80 ---~A~~~L-~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 80 ---QAFEAL-QRHDVVLGPAEDGG 99 (122)
T ss_dssp ---HHHHHT-TT-SEEEEEBTTSS
T ss_pred ---HHHHHh-ccCCEEEeeccCCC
Confidence 334444 23499999988766
No 254
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=71.00 E-value=23 Score=30.93 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=37.1
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHH-HHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER-RILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~-~~~l~~~GA~Vv~v~~ 210 (295)
+.+|+..+|-.|..++......|.+++++........+ ...++..+.++..+..
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 57888889999999999988899988777654221111 2233445677766544
No 255
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=70.95 E-value=38 Score=32.99 Aligned_cols=129 Identities=18% Similarity=0.144 Sum_probs=73.4
Q ss_pred CeEEEEeCCC-ccHHHHHHHHHHcCCeEEEEECC-CCCHHH----HHHHHhCCCE-EEEeCCCCChHHHH-HHHHHHHHc
Q 022547 156 KTVLVEPTTG-NTGLGIAFVAAVKGYKLIVTMPA-STNLER----RILLRAFGAE-IILTDPEKGLRGAL-DKAEEIVLN 227 (295)
Q Consensus 156 ~~~vv~aSsG-N~g~AlA~aa~~~Gi~~~ivvp~-~~~~~~----~~~l~~~GA~-Vv~v~~~~~~~~a~-~~a~~~a~~ 227 (295)
+++|+.+|+| .+..++-+.-...|..++.|+-+ ..+.+. .+....+||. .++++.. ++-+ +.+....+.
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~r---eeF~~~yi~~~i~a 81 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAR---EEFVEDYIFPAIKA 81 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecH---HHHHHHHHHHHHHh
Confidence 4678889998 89999999999999998877644 332222 3344567987 6666642 2222 222222222
Q ss_pred CCCeEEecCCCCh---HHHHHHHHHHHHHHHHhhCCCCCEEEE-cCCchHHHHHHHHHHHhcCCCCEEEE
Q 022547 228 TPNAYMFQQFDNM---ANLKIHFDSTGPEIWEDTLGCVDIFVA-AIGTGGTITGTGRFLKMMNKEIKARI 293 (295)
Q Consensus 228 ~~~~~~~~~~~n~---~~~~~Gy~t~~~EI~~Ql~~~~d~vv~-pvGtGgt~aGi~~~lk~~~~~vkVig 293 (295)
+..|-+.|-.. +.+. -.+...|+.++.+ .++|.- |+|=|-=.-=.-.+++..+|+.+||+
T Consensus 82 --na~Yeg~YpL~TalaRPL--Iak~lVe~A~k~g--a~avaHGcTGKGNDQvRFe~~~~al~p~lkiiA 145 (403)
T COG0137 82 --NALYEGVYPLGTALARPL--IAKKLVEAAKKEG--ADAVAHGCTGKGNDQVRFELAILALNPDLKIIA 145 (403)
T ss_pred --hceeeccccccchhhHHH--HHHHHHHHHHHcC--CCEEEecCCCCCCceeeeeeehhhhCCCcEEEe
Confidence 34454444322 2232 2455568888863 344433 23333322223344566789999886
No 256
>PRK08017 oxidoreductase; Provisional
Probab=70.91 E-value=38 Score=29.67 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=38.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+.+|+..+|.-|.++|......|.+++++... ..+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 56888888999999999998999987666543 3555566667887776664
No 257
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=70.71 E-value=38 Score=28.79 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=65.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (295)
.+|..-+.|+-|+++|..++.+|++++.+-|...+.. .....|.+ . . ++++.+..+ +.+.+.-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~--~-~---~l~ell~~a--------Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVE--Y-V---SLDELLAQA--------DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEE--E-S---SHHHHHHH---------SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hcccccce--e-e---ehhhhcchh--------hhhhhhh
Confidence 4577789999999999999999999988877643222 33344442 1 1 244433221 3333332
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHH--HHHHHHHHh
Q 022547 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI--TGTGRFLKM 284 (295)
Q Consensus 237 ~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~--aGi~~~lk~ 284 (295)
-.++.+ ..-+..|.++++ +.+.+++-+|-|+.+ ..+..++++
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh
Confidence 222221 233566888887 578899999999987 567777765
No 258
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=70.60 E-value=30 Score=31.68 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=39.5
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
..+.+++..+|. +.|..|.+++..|+.+|++++++.+ ...+++.++.+|++.++.
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVD 212 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEec
Confidence 456677677776 5666999999999999998766644 345666777788765543
No 259
>PRK07985 oxidoreductase; Provisional
Probab=70.37 E-value=29 Score=31.75 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=40.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC-CC--HHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TN--LERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~-~~--~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
+..||+..+|.-|.++|......|.+++++.... .. ......++..|.+++.+..+....+.+..+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 118 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSL 118 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHH
Confidence 3678999999999999999999999987754321 11 112223445677766554432223344333
No 260
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.10 E-value=24 Score=30.73 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=38.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+.++|--|.+++......|.++++....... ......++..|.++..+..
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLA 63 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEe
Confidence 367888888999999999888899987776543221 2234456667777665544
No 261
>PRK08264 short chain dehydrogenase; Validated
Probab=69.98 E-value=19 Score=31.31 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=27.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCC-eEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi-~~~ivvp~ 188 (295)
+..+|+.++|.-|.++|......|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4678999999999999999999999 77766654
No 262
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=69.92 E-value=46 Score=29.63 Aligned_cols=56 Identities=32% Similarity=0.519 Sum_probs=38.7
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+.+.+++..+|...+|..|.+++..++.+|++++++... ..+.+.++.+|++.++
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADHVI 189 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCceee
Confidence 4456667777777767999999999999999986555432 2445555556664433
No 263
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=69.84 E-value=77 Score=27.77 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=25.9
Q ss_pred CCCCEEEEcCCchHHHHHHHHHHHhcC----CCCEEEEeC
Q 022547 260 GCVDIFVAAIGTGGTITGTGRFLKMMN----KEIKARILL 295 (295)
Q Consensus 260 ~~~d~vv~pvGtGgt~aGi~~~lk~~~----~~vkVigV~ 295 (295)
+.+|.||++- +..+.|+..++++.+ .++.|+|+|
T Consensus 176 ~~~~ai~~~~--d~~a~g~~~~l~~~g~~ip~di~v~g~d 213 (268)
T cd06270 176 APFTAVFCAN--DEMAAGAISALREHGISVPQDVSIIGFD 213 (268)
T ss_pred CCCCEEEEcC--cHHHHHHHHHHHHcCCCCCCceeEEEec
Confidence 4689888765 456789999998865 357899886
No 264
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.83 E-value=37 Score=29.47 Aligned_cols=54 Identities=26% Similarity=0.281 Sum_probs=35.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHH-HHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~-~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+.++|..|.+++......|.+++++........ ....++. |.++..+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~ 60 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAA 60 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEEC
Confidence 46789999999999999999999999777765432111 1222232 556655544
No 265
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.67 E-value=38 Score=30.22 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=33.4
Q ss_pred CeEEEEeCC--CccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hC-CCEEEEeC
Q 022547 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AF-GAEIILTD 209 (295)
Q Consensus 156 ~~~vv~aSs--GN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~-~~-GA~Vv~v~ 209 (295)
+..||+.++ +.-|.++|..-...|.+++++-.......+++.+. .. |.+++.+.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 65 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLP 65 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEe
Confidence 366777765 68899999999999998777643322233344332 22 55555443
No 266
>PRK05693 short chain dehydrogenase; Provisional
Probab=69.64 E-value=54 Score=29.21 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=37.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
..||+..+|-.|.++|......|.+++++... ..+.+.+...|.+.+.++-
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl 53 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDV 53 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeC
Confidence 56888888999999999999999988776543 3445555566777666654
No 267
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=69.36 E-value=24 Score=30.86 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=37.9
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~~ 211 (295)
..+|+.++|.-|.++|......|.++++....... ......++..+.+++.+..+
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGD 60 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 56888888999999999999999987765433211 12334556677777766543
No 268
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=69.32 E-value=45 Score=30.62 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~-~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
....+++++..+|.. +|-.|.+++..|+. +|.+++++.+ +.++++.++.+|++.++.
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTIN 213 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEec
Confidence 444567787777776 68899999999997 4998655533 335677777788765543
No 269
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=69.28 E-value=81 Score=27.84 Aligned_cols=34 Identities=6% Similarity=-0.076 Sum_probs=26.9
Q ss_pred CCCCEEEEcCCchHHHHHHHHHHHhcC----CCCEEEEeC
Q 022547 260 GCVDIFVAAIGTGGTITGTGRFLKMMN----KEIKARILL 295 (295)
Q Consensus 260 ~~~d~vv~pvGtGgt~aGi~~~lk~~~----~~vkVigV~ 295 (295)
..+|.||+. +...+.|+..++++.+ .+++|+|+|
T Consensus 179 ~~~~ai~~~--~d~~a~g~~~~l~~~g~~vP~di~vvg~d 216 (269)
T cd06297 179 SPPLAVFAS--ADQQALGALQEAVELGLTVGEDVRVVGFD 216 (269)
T ss_pred CCCcEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 468888887 4457789999999876 378999987
No 270
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.25 E-value=47 Score=32.33 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=39.5
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+++.+|+..+|.-|.++|......|.+++++-.........+.....|++++.++-
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv 265 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDI 265 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeC
Confidence 45778888889999999999999999977765433222333344456777777665
No 271
>PRK10083 putative oxidoreductase; Provisional
Probab=69.24 E-value=43 Score=30.78 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=41.5
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~-~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.....+++|++.+|.. +|-.|.+++..|+. +|.+.++++.. .+.+.+.++.+|++-++
T Consensus 153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 3455677787766655 78888888888886 69987666543 55778888888986544
No 272
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.20 E-value=62 Score=28.44 Aligned_cols=53 Identities=26% Similarity=0.183 Sum_probs=37.4
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|--|.++|......|.+++++.... ....+.++..+...+.++-
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl 60 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDV 60 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecC
Confidence 4678888889999999999999999877664432 3444455555666665554
No 273
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=69.20 E-value=36 Score=31.53 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=51.5
Q ss_pred cccCCCCeEE--EEeCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC
Q 022547 113 VTEGCVGNVA--AKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST 190 (295)
Q Consensus 113 l~~~~g~~I~--~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~ 190 (295)
..++.|+.|+ .++|+. ..-+-+=.+...+..+.+...+.-....+...+.|+.|.++|..++.+|.+++++-+.
T Consensus 108 ~a~~~gi~v~~~~~~~~v--a~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~-- 183 (287)
T TIGR02853 108 LAADAGVKLIELFERDDV--AIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS-- 183 (287)
T ss_pred HHHHCCCeEEEEEeccce--EEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC--
Confidence 4455566555 444432 2233344566666666544222211245677888999999999999999987766443
Q ss_pred CHHHHHHHHhCCCE
Q 022547 191 NLERRILLRAFGAE 204 (295)
Q Consensus 191 ~~~~~~~l~~~GA~ 204 (295)
..+......+|.+
T Consensus 184 -~~~~~~~~~~g~~ 196 (287)
T TIGR02853 184 -SADLARITEMGLI 196 (287)
T ss_pred -HHHHHHHHHCCCe
Confidence 2344445555654
No 274
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=69.12 E-value=67 Score=29.08 Aligned_cols=55 Identities=33% Similarity=0.444 Sum_probs=38.5
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+.+.+|+..+|. ++|..|.+++..|+..|.+++++.+ ...+++.++.+|++.++
T Consensus 155 ~~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 155 LGPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred hcCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 3456677666665 6788999999999999999666543 33566666667765443
No 275
>PRK07774 short chain dehydrogenase; Provisional
Probab=69.10 E-value=32 Score=29.99 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=36.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHhCCCEEEEeC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTD 209 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~-~~~~~l~~~GA~Vv~v~ 209 (295)
++.||+.++|--|.++|......|.+++++....... ...+.++..+.+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQ 61 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 4678999889999999999999999988776542211 22233444565655443
No 276
>PRK07904 short chain dehydrogenase; Provisional
Probab=69.08 E-value=34 Score=30.43 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=34.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHc-CCeEEEEECCCCC--HHHHHHHHhCCC-EEEEeC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVK-GYKLIVTMPASTN--LERRILLRAFGA-EIILTD 209 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~-Gi~~~ivvp~~~~--~~~~~~l~~~GA-~Vv~v~ 209 (295)
+..+|+.++|-.|.++|...... |.+++++...... ....+.++..|. ++..+.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~ 66 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVID 66 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEE
Confidence 36788888888888998887777 4888887664332 223344555553 554443
No 277
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=69.06 E-value=27 Score=31.91 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
+.+.+++++..+|. +.|..|.+++..|+.+|++++++.+.. .+++.++.+|++-+
T Consensus 161 ~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~~~ 215 (329)
T cd08298 161 KLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGADWA 215 (329)
T ss_pred HhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCcEE
Confidence 45667777777775 578899999999999999876665433 56677777888543
No 278
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=68.99 E-value=25 Score=32.67 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=38.5
Q ss_pred CCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 152 ~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+++..+|...+|-.|.+++..|+.+|++++.+. . ..+.+.++.+|++-++
T Consensus 152 ~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~v~ 203 (339)
T cd08249 152 ASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADAVF 203 (339)
T ss_pred CCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCEEE
Confidence 35666777777778999999999999999876654 2 2566666778875433
No 279
>PRK09291 short chain dehydrogenase; Provisional
Probab=68.93 E-value=16 Score=32.08 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=28.6
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..+|+..+|..|.+++......|.+++++...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367899999999999999999999998887764
No 280
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=68.76 E-value=79 Score=27.52 Aligned_cols=145 Identities=13% Similarity=0.049 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC---------------C-----HHHHHHHH
Q 022547 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---------------N-----LERRILLR 199 (295)
Q Consensus 140 ~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~---------------~-----~~~~~~l~ 199 (295)
...+..+.+++. ..|+...+.....+++..+...|++++.+..... + ..-.+.+.
T Consensus 56 ~~~~~~l~~~~v-----~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (298)
T cd06268 56 AAAARELVDDGV-----DAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLA 130 (298)
T ss_pred HHHHHHHHhCCc-----eEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHH
Confidence 344555555554 4455444444455677888889988765432110 0 11123444
Q ss_pred hCC--CEEEEeCCCCChHH-HHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHHH
Q 022547 200 AFG--AEIILTDPEKGLRG-ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276 (295)
Q Consensus 200 ~~G--A~Vv~v~~~~~~~~-a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~a 276 (295)
..| -+|.++..+..+.. ..+...+..++.+..+......+.... -+.....+|.+ ..+|.||+. +.+..+.
T Consensus 131 ~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~l~~---~~~~~vi~~-~~~~~~~ 204 (298)
T cd06268 131 EKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGAT--DFSPLIAKLKA---AGPDAVFLA-GYGGDAA 204 (298)
T ss_pred HhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCCc--cHHHHHHHHHh---cCCCEEEEc-cccchHH
Confidence 444 46666644322322 222223333333211111111111000 12333334433 257877765 4557788
Q ss_pred HHHHHHHhcCCCCEEEEeC
Q 022547 277 GTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 277 Gi~~~lk~~~~~vkVigV~ 295 (295)
++.+.+++.+.++++++.|
T Consensus 205 ~~~~~~~~~g~~~~~~~~~ 223 (298)
T cd06268 205 LFLKQAREAGLKVPIVGGD 223 (298)
T ss_pred HHHHHHHHcCCCCcEEecC
Confidence 8999999888788888754
No 281
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=68.75 E-value=80 Score=27.54 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=29.1
Q ss_pred HHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcC----CCCEEEEeC
Q 022547 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN----KEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~----~~vkVigV~ 295 (295)
+++++ ...+|.||+ +++..+.|+..++++.+ .++.|+|+|
T Consensus 171 ~~l~~-~~~~~ai~~--~~~~~a~~~~~~l~~~g~~~p~~i~vig~d 214 (268)
T cd06273 171 QLLEQ-PPRPTAVIC--GNDVLALGALYEARRLGLSVPEDLSIVGFD 214 (268)
T ss_pred HHHcC-CCCCCEEEE--cChHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 44443 256899887 46677889999998865 367899886
No 282
>PRK07062 short chain dehydrogenase; Provisional
Probab=68.51 E-value=32 Score=30.44 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=28.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..+|+.++|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 477888888999999999999999998777654
No 283
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.48 E-value=32 Score=30.92 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=39.2
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~V 205 (295)
.+.+.++...+|...+|..|.+++..|+.+|++++++.+. .+.+.++.+|++-
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~~ 190 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGADE 190 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCCE
Confidence 3445667677777767999999999999999987666532 5666667788743
No 284
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.14 E-value=66 Score=28.78 Aligned_cols=56 Identities=25% Similarity=0.447 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+.+.+++..+|....|..|.+++..|+.+|++++++.+ + .+.+.++.+|++-++
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~ 193 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPII 193 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEE
Confidence 4566777777777776889999999999999999766654 2 455555667765443
No 285
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.04 E-value=33 Score=29.65 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=36.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~--~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+.++|..|..+|......|.++++++..+... .....+...|.++..+..+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKAD 63 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3678888889999999998888899977763332211 1223344456677665543
No 286
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=68.03 E-value=52 Score=30.47 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=37.6
Q ss_pred CCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 152 ~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+++..+|- ++|..|.+++..|+.+|++.++++. .+..+...++.+|++.++
T Consensus 173 ~~~~~~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~~ 225 (350)
T cd08240 173 LVADEPVVII-GAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVVV 225 (350)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEEe
Confidence 3355565555 6799999999999999996555543 345677777888876444
No 287
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=67.99 E-value=81 Score=27.35 Aligned_cols=34 Identities=15% Similarity=-0.005 Sum_probs=26.3
Q ss_pred CCCCEEEEcCCchHHHHHHHHHHHhcCC----CCEEEEeC
Q 022547 260 GCVDIFVAAIGTGGTITGTGRFLKMMNK----EIKARILL 295 (295)
Q Consensus 260 ~~~d~vv~pvGtGgt~aGi~~~lk~~~~----~vkVigV~ 295 (295)
+.+|.||++ +..++.|+..++++.+. ++.|+|+|
T Consensus 177 ~~~~ai~~~--~d~~a~g~~~~l~~~g~~vp~di~v~g~d 214 (267)
T cd06283 177 KKKTAIFAA--NGLILLEVLKALKELGIRIPEDVGLIGFD 214 (267)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCccceEEEEeC
Confidence 358999887 45667799999988763 67899886
No 288
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=67.78 E-value=33 Score=31.23 Aligned_cols=53 Identities=26% Similarity=0.413 Sum_probs=38.1
Q ss_pred CCCCCC-eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 151 DITPGK-TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 151 ~~~~g~-~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
.+.+++ +.+|...+|..|.+++..|+.+|.+.++++.. ..+.+.++.+|++-+
T Consensus 141 ~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~ 194 (323)
T TIGR02823 141 GLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEV 194 (323)
T ss_pred CCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEE
Confidence 366676 77777777999999999999999986655442 244466667776433
No 289
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.70 E-value=30 Score=30.65 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=36.3
Q ss_pred CeEEEEeCC--CccHHHHHHHHHHcCCeEEEEEC----CCC----CH----HHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMP----AST----NL----ERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSs--GN~g~AlA~aa~~~Gi~~~ivvp----~~~----~~----~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+.++ +.-|.++|......|.++++... ... .. ...+.++..|.+++.+..+
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D 76 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELD 76 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 466777776 47999999999999998777531 110 11 2234456678888766543
No 290
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=67.60 E-value=51 Score=30.45 Aligned_cols=52 Identities=27% Similarity=0.422 Sum_probs=38.3
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
.+.+.++++.+|.+ .|..|.+++..|+.+|++++++.. +.++.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCCC
Confidence 44466677777776 789999999999999998766644 34556666677874
No 291
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=67.44 E-value=26 Score=33.47 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=38.2
Q ss_pred EEEEeCC---CccHHHHHHH-HHHcCCeEEEEECCCC--CHHHHHHHHhCCCEEEEeCC
Q 022547 158 VLVEPTT---GNTGLGIAFV-AAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 158 ~vv~aSs---GN~g~AlA~a-a~~~Gi~~~ivvp~~~--~~~~~~~l~~~GA~Vv~v~~ 210 (295)
.|+-.+. +|.+.+++.. ++.+|++++++.|+.. +...++.++..|.++.+++.
T Consensus 161 kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d 219 (338)
T PRK08192 161 HIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQ 219 (338)
T ss_pred EEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 3455555 5889999876 6677999999999864 55556666777888777663
No 292
>PRK08339 short chain dehydrogenase; Provisional
Probab=67.44 E-value=31 Score=30.90 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=28.0
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
++..||+.++|.-|.++|......|.+++++...
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~ 41 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRN 41 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 3467888888999999999999999997776543
No 293
>PRK05370 argininosuccinate synthase; Validated
Probab=67.42 E-value=1.4e+02 Score=29.78 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=73.3
Q ss_pred CCCeEEEEeCCC-ccHHHHHHHHHHcCCeEEEEECC-CC----C-HHHHHHHHhCCC-EEEEeCCCCCh-HHHHHHHHHH
Q 022547 154 PGKTVLVEPTTG-NTGLGIAFVAAVKGYKLIVTMPA-ST----N-LERRILLRAFGA-EIILTDPEKGL-RGALDKAEEI 224 (295)
Q Consensus 154 ~g~~~vv~aSsG-N~g~AlA~aa~~~Gi~~~ivvp~-~~----~-~~~~~~l~~~GA-~Vv~v~~~~~~-~~a~~~a~~~ 224 (295)
+|+++++.+|+| .+...+-+.-.. |++++.|.-+ .. + ..-.+....+|| ++++++-...| ++.+ ..
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i----~a 84 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGI----AA 84 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHH----HH
Confidence 345778888998 566666666555 9998877643 22 1 234456677899 68888763222 2222 22
Q ss_pred HHcCCCeEEe----cCCCC---hHHHHHHHHHHHHHHHHhhCCCCCEEEEc-CCchHHHHHHHHHHHhcCCCCEEEE
Q 022547 225 VLNTPNAYMF----QQFDN---MANLKIHFDSTGPEIWEDTLGCVDIFVAA-IGTGGTITGTGRFLKMMNKEIKARI 293 (295)
Q Consensus 225 a~~~~~~~~~----~~~~n---~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~p-vGtGgt~aGi~~~lk~~~~~vkVig 293 (295)
.+. +..|. +.|.. ...+. ......|+.++. ..|+|.-. .|-|-=..-.=.+++.+.|+++||+
T Consensus 85 I~a--nA~Y~~~~e~~Y~l~t~LaRpl--ia~~lv~~A~~~--ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~Via 155 (447)
T PRK05370 85 IQC--GAFHISTGGVTYFNTTPLGRAV--TGTMLVAAMKED--GVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYK 155 (447)
T ss_pred HHc--CCccccccCccccCCCcchHHH--HHHHHHHHHHHh--CCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEec
Confidence 222 22221 11111 11221 123333555554 45666654 4566666677778888999999986
No 294
>PLN02702 L-idonate 5-dehydrogenase
Probab=67.40 E-value=40 Score=31.64 Aligned_cols=57 Identities=30% Similarity=0.382 Sum_probs=42.5
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+...+.+++..+|. +.|..|.++...|+.+|.+.++++.. ...+.+.++.+|++.+.
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 44556677777776 57889999999999999986665543 46777788888987554
No 295
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.21 E-value=22 Score=33.95 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=51.3
Q ss_pred HHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 145 ~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+|-.++..++|.+ ++..+.|--|...-.+|+.+|-+=+|++. ..+.+++..+.+||+++.-..
T Consensus 160 HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 160 HACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeecc
Confidence 5566777788855 77899999999999999999998777765 566889999999999876544
No 296
>PRK07775 short chain dehydrogenase; Provisional
Probab=67.15 E-value=36 Score=30.58 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=37.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+..+|.-|.+++......|.+++++...... ..-...++..|.++..+..+
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 67 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLD 67 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 367888888999999999988899987766543211 11223455668887765543
No 297
>PRK09072 short chain dehydrogenase; Provisional
Probab=67.13 E-value=32 Score=30.45 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=28.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..+|+.++|-.|.++|......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 467888889999999999999999997777653
No 298
>PRK06483 dihydromonapterin reductase; Provisional
Probab=67.10 E-value=61 Score=28.06 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=38.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+.++|--|.++|......|.+++++-.... ...+.++..|++.+.++-
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~D~ 55 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY--PAIDGLRQAGAQCIQADF 55 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--hHHHHHHHcCCEEEEcCC
Confidence 36788888899999999998889998887754322 234555667877666654
No 299
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.05 E-value=35 Score=30.24 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=25.7
Q ss_pred CeEEEEeCC--CccHHHHHHHHHHcCCeEEEEEC
Q 022547 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 156 ~~~vv~aSs--GN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
+..||+.++ +.-|+++|......|.+++++..
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 466777776 67999999999999999777644
No 300
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=66.94 E-value=75 Score=29.17 Aligned_cols=56 Identities=30% Similarity=0.416 Sum_probs=37.9
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
...+.+++..+|. ++|-.|.+++..|+.+|++.++++. ....+...++.+|++-++
T Consensus 160 ~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~~~~~ 215 (343)
T cd08235 160 KAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGADYTI 215 (343)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCcEEe
Confidence 3456778787777 4677999999999999999443332 234555566667765433
No 301
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=66.83 E-value=58 Score=30.52 Aligned_cols=56 Identities=30% Similarity=0.401 Sum_probs=38.5
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
+.+.+.+++..+|. +.|..|.+++..|+.+|++.++++.. +..+.+.++.+|++-+
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~~v 231 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGATHT 231 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCeEE
Confidence 34556677777777 56899999999999999973444322 3455566677787433
No 302
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=66.46 E-value=41 Score=29.54 Aligned_cols=51 Identities=27% Similarity=0.238 Sum_probs=35.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l-~~~GA~Vv~v~~ 210 (295)
..+|+..+|..|.++|......|.+++++... ..+...+ ...|.+++.+..
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~ 53 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQL 53 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEe
Confidence 45888889999999999999999987776543 2333333 334666655543
No 303
>PRK09242 tropinone reductase; Provisional
Probab=66.43 E-value=37 Score=29.88 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=37.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHhC--CCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAF--GAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~-~~~~~l~~~--GA~Vv~v~~~ 211 (295)
+..+|+..+|.-|.++|......|.+++++....... .....++.. |.++..+..+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D 68 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAAD 68 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECC
Confidence 4678888889999999999999999877776532111 112233333 6677666543
No 304
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=66.37 E-value=34 Score=32.35 Aligned_cols=55 Identities=31% Similarity=0.365 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~V 205 (295)
....+.+|+..+| .+.|..|.+++..|+.+|.+.++++. ....+.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 3445667777777 56789999999999999985444443 3567888888899854
No 305
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=66.35 E-value=23 Score=35.04 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=37.2
Q ss_pred EEEeCC---CccHHHHHHHHHHc-CCeEEEEECCCC--CHHHHHHHHhCCCEEEEeC
Q 022547 159 LVEPTT---GNTGLGIAFVAAVK-GYKLIVTMPAST--NLERRILLRAFGAEIILTD 209 (295)
Q Consensus 159 vv~aSs---GN~g~AlA~aa~~~-Gi~~~ivvp~~~--~~~~~~~l~~~GA~Vv~v~ 209 (295)
|+-.+. +|.+.+++.+++.+ |++++++.|+.. +...++.++..|++|.+++
T Consensus 244 Ia~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 244 IALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 444455 58899999996665 999999999864 4454556666688877665
No 306
>PRK08862 short chain dehydrogenase; Provisional
Probab=66.27 E-value=75 Score=27.84 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=47.1
Q ss_pred eEEEEECCC--CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHH-HHHHHcCCCe-EEecCCCChHHHHHHHHHHHHHHHH
Q 022547 181 KLIVTMPAS--TNLERRILLRAFGAEIILTDPEKGLRGALDKA-EEIVLNTPNA-YMFQQFDNMANLKIHFDSTGPEIWE 256 (295)
Q Consensus 181 ~~~ivvp~~--~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a-~~~a~~~~~~-~~~~~~~n~~~~~~Gy~t~~~EI~~ 256 (295)
+.+++...+ +-..-...+...|++|+.+.++ .+..+.. .++.+..... .+.-...++. ....+..++.+
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~---~~~l~~~~~~i~~~~~~~~~~~~D~~~~~----~~~~~~~~~~~ 78 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQD---QSALKDTYEQCSALTDNVYSFQLKDFSQE----SIRHLFDAIEQ 78 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC---HHHHHHHHHHHHhcCCCeEEEEccCCCHH----HHHHHHHHHHH
Confidence 345555443 3334556667789999998764 2333333 2332222222 2221222322 44567778888
Q ss_pred hhCCCCCEEEEcCCc
Q 022547 257 DTLGCVDIFVAAIGT 271 (295)
Q Consensus 257 Ql~~~~d~vv~pvGt 271 (295)
+++..+|.+|..+|.
T Consensus 79 ~~g~~iD~li~nag~ 93 (227)
T PRK08862 79 QFNRAPDVLVNNWTS 93 (227)
T ss_pred HhCCCCCEEEECCcc
Confidence 885479999999974
No 307
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=66.19 E-value=52 Score=28.47 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=40.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
..+|+..+|.-|.+++......|.+++++...+.. ......++..|.++..+..+-...+.++.+
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~ 69 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAM 69 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHH
Confidence 56888888999999999998999987765443221 122334555677766555432223334443
No 308
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=66.18 E-value=32 Score=31.41 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=31.1
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivv 186 (295)
....+++++..+|...+|..|.+++..|+.+|.+++++.
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~ 194 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS 194 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 345567777877777779999999999999999876653
No 309
>PRK06953 short chain dehydrogenase; Provisional
Probab=66.15 E-value=71 Score=27.42 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=37.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
..+|+..+|.-|.++|......|.+++++... ..+.+.++..+.+.+.++-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecC
Confidence 56888889999999999888889998777553 3444555556777665554
No 310
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=66.09 E-value=86 Score=27.80 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=38.7
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
..+.++...+|...+|..|.+++..++..|.+++++.+ ...+.+.++.+|++.+
T Consensus 135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 188 (323)
T cd05276 135 GGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGADVA 188 (323)
T ss_pred cCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCCEE
Confidence 34566767777777788999999999999999655543 2345556666776544
No 311
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=66.06 E-value=34 Score=32.31 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=37.1
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+++|++.+| .++|.-|.+++..|+.+|.+++++... ...+....+.+||+.++
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEE
Confidence 34456767666 667999999999999999986554332 22334455678886544
No 312
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=66.06 E-value=55 Score=31.03 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=39.0
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
..+.+++|+..+|. ++|.-|.+++..|+.+|+.-++++. ....+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 45567777776666 6789999999999999994334433 244677777888885
No 313
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=66.01 E-value=32 Score=31.62 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=41.1
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhCCCEEEEe
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILT 208 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~-~~~~~~~l~~~GA~Vv~v 208 (295)
+.+.+++..+|...+|..|.+++..|+.+|.+++++..... -..+.+.++.+|++-++.
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 44567767666666799999999999999999877765321 124556666678765443
No 314
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=65.92 E-value=32 Score=34.28 Aligned_cols=53 Identities=9% Similarity=-0.065 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 135 KDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 135 K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
--+|..+.+..+++.........+|+..+.||-|..+|.....+|.+++.+..
T Consensus 216 TG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 34788888887765443333335688899999999999999999999884443
No 315
>PRK07069 short chain dehydrogenase; Validated
Probab=65.90 E-value=62 Score=28.11 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=24.4
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
.+|+..+|.-|.++|..-...|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788888889999998888888887766543
No 316
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=65.87 E-value=46 Score=30.92 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=34.8
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
.+..-+.|+.|++++..++.+|.+++++-+. ..+....+.+|++.+
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 3566777999999999999999977776443 445666777888754
No 317
>PLN02342 ornithine carbamoyltransferase
Probab=65.79 E-value=23 Score=33.97 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEEeCC-CccHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhCCC-EEEEeC
Q 022547 148 ESGDITPGKTVLVEPTT-GNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGA-EIILTD 209 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSs-GN~g~AlA~aa~~~Gi~~~ivvp~~~--~~~~~~~l~~~GA-~Vv~v~ 209 (295)
+.|.+. |.+ |+-.+. .|.+.+++.+++++|++++++.|+.. +...++.++..|. ++.+++
T Consensus 188 ~~G~l~-glk-va~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GTK-VVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CCE-EEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 456543 333 333444 58999999999999999999999864 3444555566674 666654
No 318
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=65.73 E-value=42 Score=30.45 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=38.5
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
..+.+++..+|...+|..|.+++..++.+|.+++++... ..+.+.++.+|++
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCc
Confidence 556777788888888999999999999999998776542 2444445555653
No 319
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=65.64 E-value=35 Score=31.62 Aligned_cols=52 Identities=31% Similarity=0.475 Sum_probs=38.0
Q ss_pred CCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 153 ~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.++...+|.+ +|..|.+++..|+.+|++.++++ ..+..|....+.+|++-++
T Consensus 162 ~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~ 213 (341)
T cd05281 162 VSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVVI 213 (341)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcceee
Confidence 4666777754 68999999999999999544555 3355777777888886443
No 320
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=65.29 E-value=30 Score=32.45 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=40.8
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHH-HHhCCCEEEEeC
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRIL-LRAFGAEIILTD 209 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~-l~~~GA~Vv~v~ 209 (295)
.|.+. |.++.+..-.+|.+++++..++++|++++++.|+... ...++. .+..|.++...+
T Consensus 147 ~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 147 RGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred hCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 45543 2243344434799999999999999999999998643 233332 456788887665
No 321
>PRK06198 short chain dehydrogenase; Provisional
Probab=65.28 E-value=40 Score=29.64 Aligned_cols=55 Identities=25% Similarity=0.257 Sum_probs=36.6
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+..+|.-|..+|......|.+.++++..+.. ......++..|.++..+..
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 63 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQA 63 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 467888888999999999999999984444433221 1223355667888765543
No 322
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.26 E-value=94 Score=27.12 Aligned_cols=41 Identities=5% Similarity=-0.121 Sum_probs=29.0
Q ss_pred HHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcC----CCCEEEEeC
Q 022547 252 PEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN----KEIKARILL 295 (295)
Q Consensus 252 ~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~----~~vkVigV~ 295 (295)
.+++++ .+.+|.||+. +..++.|+..++++.+ .++.|+|+|
T Consensus 167 ~~~l~~-~~~~~ai~~~--~d~~a~g~~~~l~~~g~~~p~di~iig~d 211 (265)
T cd06285 167 EKLLRS-DSPPTAIFAV--NDFAAIGVMGAARDRGLRVPDDVALVGYN 211 (265)
T ss_pred HHHHcC-CCCCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeec
Confidence 344433 2468988876 5567779999999865 357889876
No 323
>PLN02583 cinnamoyl-CoA reductase
Probab=65.18 E-value=37 Score=31.02 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=29.3
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
++..+|+..+|..|..++......|.++++++..
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3467899999999999999999999999888764
No 324
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=65.11 E-value=34 Score=31.57 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=34.8
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEE
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~V 205 (295)
|++.+|...+|..|.+++..|+.+|++++++... .+.+.++.+|++-
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~ 209 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADD 209 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCce
Confidence 6677777767999999999999999987665532 2555666677643
No 325
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=65.09 E-value=97 Score=27.21 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=26.6
Q ss_pred CCCCEEEEcCCchHHHHHHHHHHHhcCC----CCEEEEeC
Q 022547 260 GCVDIFVAAIGTGGTITGTGRFLKMMNK----EIKARILL 295 (295)
Q Consensus 260 ~~~d~vv~pvGtGgt~aGi~~~lk~~~~----~vkVigV~ 295 (295)
+.+|.||+. ++..+.|+..++++.+. ++.|+++|
T Consensus 185 ~~~~ai~~~--~~~~a~g~~~~l~~~g~~ip~~i~ii~~d 222 (275)
T cd06295 185 PDFDAVFAA--SDLMALGALRALREAGRRVPEDVAVVGFD 222 (275)
T ss_pred CCCCEEEEC--CcHHHHHHHHHHHHhCCCCccceEEEeeC
Confidence 468988887 45677899999988653 68899986
No 326
>PLN02253 xanthoxin dehydrogenase
Probab=65.07 E-value=32 Score=30.76 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=27.3
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
+..+|+.++|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 46789999999999999999999998777644
No 327
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.04 E-value=55 Score=28.46 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=34.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHH-HHhCCCEEEEeC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAFGAEIILTD 209 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~-l~~~GA~Vv~v~ 209 (295)
++.+|+.++|.-|.++|......|.++++...... .+.+. ...++.++..+.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~ 58 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE--DAAEALADELGDRAIALQ 58 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHhCCceEEEE
Confidence 46789999999999999998889998877554322 22222 233455555443
No 328
>PRK07063 short chain dehydrogenase; Provisional
Probab=65.02 E-value=42 Score=29.58 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=35.4
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHh--CCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRA--FGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~--~GA~Vv~v~~ 210 (295)
+..||+.++|--|.++|......|.+++++...... ....+.++. .|.++..+..
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPA 65 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEc
Confidence 467888888889999999988999987776543211 112233333 4556655543
No 329
>PLN02527 aspartate carbamoyltransferase
Probab=64.87 E-value=42 Score=31.52 Aligned_cols=59 Identities=17% Similarity=0.114 Sum_probs=40.5
Q ss_pred cCCCCCCCeEEEEeCCC---ccHHHHHHHHHHc-CCeEEEEECCCC--CHHHHHHHHhCCCEEEEeC
Q 022547 149 SGDITPGKTVLVEPTTG---NTGLGIAFVAAVK-GYKLIVTMPAST--NLERRILLRAFGAEIILTD 209 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsG---N~g~AlA~aa~~~-Gi~~~ivvp~~~--~~~~~~~l~~~GA~Vv~v~ 209 (295)
.|.+. | ..|+-.+.+ |.+.+++.++..+ |+.++++.|+.. +....+.++..|.++.+++
T Consensus 146 ~g~l~-g-~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 146 IGRLD-G-IKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred hCCcC-C-CEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 45543 2 334555554 5799999998887 999999999864 4455555666677777665
No 330
>PRK05650 short chain dehydrogenase; Provisional
Probab=64.81 E-value=40 Score=30.01 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=37.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
..+|+.++|.-|.++|......|.+++++...... ......++..|.++..+..
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRC 56 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 45888889999999999998999998777654221 2223345566777765544
No 331
>PRK07576 short chain dehydrogenase; Provisional
Probab=64.73 E-value=39 Score=30.13 Aligned_cols=55 Identities=25% Similarity=0.196 Sum_probs=36.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
+..+|+..+|.-|.++|......|.+++++...... ......+...+.+++.+..
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 65 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSA 65 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEEC
Confidence 477888888999999999988999997776543211 1122344555666655543
No 332
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=64.69 E-value=45 Score=30.49 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=36.8
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHc-CCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVK-GYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~-Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
|+..+|...+|..|.+++..|+.+ |++++++... .++.+.++.+|++-++
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 667777777789999999999998 9987666443 3566666777875444
No 333
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.53 E-value=61 Score=29.22 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=25.1
Q ss_pred CeEEEEeCCC--ccHHHHHHHHHHcCCeEEEEEC
Q 022547 156 KTVLVEPTTG--NTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 156 ~~~vv~aSsG--N~g~AlA~aa~~~Gi~~~ivvp 187 (295)
+..||+..++ .-|+++|......|.+++++-.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 4667777775 6889999999999999877643
No 334
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=64.46 E-value=51 Score=29.81 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=35.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+..+|...+|..|.+++..|+.+|.+++++.+ +.++++.++.+|++-++
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 196 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEVL 196 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 46666666799999999999999999555543 34667777778875443
No 335
>PRK06720 hypothetical protein; Provisional
Probab=64.40 E-value=56 Score=27.62 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=33.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHhCCCEEEEe
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILT 208 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~-~~~~~l~~~GA~Vv~v 208 (295)
+..+|+..+|--|.++|......|.+++++-...... ...+.++..|.++..+
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~ 70 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFV 70 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 3667887778889999988888998876664432111 1124445557665444
No 336
>PRK07326 short chain dehydrogenase; Provisional
Probab=64.13 E-value=44 Score=28.80 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=27.4
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
+..+|+.++|..|.++|......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 46788889999999999999889999777754
No 337
>PRK08251 short chain dehydrogenase; Provisional
Probab=63.88 E-value=41 Score=29.28 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=35.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHH-HHHHHHhC--CCEEEEeCCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAF--GAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~-~~~~l~~~--GA~Vv~v~~~ 211 (295)
+..+|+.++|..|.++|......|.+++++........ ....+... |+++..+..+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcC
Confidence 36788888999999999998889988776655321111 11222222 6677666543
No 338
>PRK06841 short chain dehydrogenase; Provisional
Probab=63.71 E-value=59 Score=28.44 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=27.4
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..+|+..+|--|.++|......|.+++++...
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 467888888999999999999999987776554
No 339
>PRK12827 short chain dehydrogenase; Provisional
Probab=63.68 E-value=59 Score=28.06 Aligned_cols=66 Identities=21% Similarity=0.141 Sum_probs=41.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC-CHHH----HHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLER----RILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~-~~~~----~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
+..+|+..+|--|.++|......|.+++++..... ...+ ...+...|.++..+..+..-.+.++.+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAA 77 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 46788888999999999998899999777654221 2222 233455677776665432223334333
No 340
>PRK12747 short chain dehydrogenase; Provisional
Probab=63.45 E-value=36 Score=29.90 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=36.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhCCCEEEEeC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTD 209 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~--~~~~~~~l~~~GA~Vv~v~ 209 (295)
+..||+.++|.-|.++|......|.+++++..... .......++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 47789999999999999999999998777542221 1222334555566655443
No 341
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=63.36 E-value=35 Score=29.49 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=36.1
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~ 210 (295)
..+|+..+|.-|..+|......|.+++++...+.. ......+...+.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEG 57 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEe
Confidence 46888889999999999999999988776652211 1112334445666665544
No 342
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=63.34 E-value=45 Score=30.70 Aligned_cols=55 Identities=35% Similarity=0.368 Sum_probs=37.6
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
.+.+.+++..+|. ++|-.|.++...|+.+|...++++ ..+..+...++.+|++-+
T Consensus 162 ~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~v 216 (347)
T cd05278 162 LAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATDI 216 (347)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcEE
Confidence 4456677777775 467889999999999997444444 234566677777776543
No 343
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=63.31 E-value=1.1e+02 Score=26.99 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=30.7
Q ss_pred HHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCC--CCEEEEeC
Q 022547 250 TGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK--EIKARILL 295 (295)
Q Consensus 250 ~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~--~vkVigV~ 295 (295)
...+++++ .+.+|.||+. +...+.|+..++++.+. ++.|+|+|
T Consensus 172 ~~~~~l~~-~~~~~ai~~~--~d~~a~~~~~al~~~g~~~di~vig~d 216 (275)
T cd06320 172 VATTILQR-NPDLKAIYCN--NDTMALGVVEAVKNAGKQGKVLVVGTD 216 (275)
T ss_pred HHHHHHHh-CCCccEEEEC--CchhHHHHHHHHHhcCCCCCeEEEecC
Confidence 44455554 2467877665 55677799999998765 78999986
No 344
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.09 E-value=60 Score=27.87 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=37.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~--~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+..+|..|.+++......|.+++++....... ...+.++..+.++..+..
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQA 63 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 3678999999999999999999999977666543321 122334455666665554
No 345
>PRK07831 short chain dehydrogenase; Provisional
Probab=63.06 E-value=60 Score=28.67 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=25.0
Q ss_pred CCeEEEEeCCC-ccHHHHHHHHHHcCCeEEEEE
Q 022547 155 GKTVLVEPTTG-NTGLGIAFVAAVKGYKLIVTM 186 (295)
Q Consensus 155 g~~~vv~aSsG-N~g~AlA~aa~~~Gi~~~ivv 186 (295)
++..+|+.++| .-|.++|......|.+++++-
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISD 49 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEe
Confidence 34678887776 699999999999999866553
No 346
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=62.99 E-value=31 Score=29.93 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=36.6
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCCC
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPE 211 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~~ 211 (295)
+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+..+
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 56 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFD 56 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 678888899999999999999997766543221 22334555667777666543
No 347
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=62.94 E-value=67 Score=24.60 Aligned_cols=49 Identities=31% Similarity=0.275 Sum_probs=35.2
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
++..+.|+.|+.++..-...+.+++++-. .+.+.+.++..|.+++..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~gd~ 49 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIYGDA 49 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEES-T
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhcccccccccc
Confidence 35577789999999998887777777744 45677788888877666544
No 348
>PRK06924 short chain dehydrogenase; Provisional
Probab=62.74 E-value=51 Score=28.75 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=34.3
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~ 209 (295)
..+|+.++|.-|.++|......|.+++++.... ...........+.+++.+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~ 54 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE-NKELTKLAEQYNSNLTFHS 54 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc-hHHHHHHHhccCCceEEEE
Confidence 468888889999999999988999887765432 1222222333455554443
No 349
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=62.64 E-value=61 Score=28.49 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=27.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..+|+.++|--|.++|......|.+++++...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 467899999999999999999999987776543
No 350
>PRK06123 short chain dehydrogenase; Provisional
Probab=62.62 E-value=33 Score=29.84 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=38.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~--~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
+..||+.++|.-|.++|..-...|..+++...... .......++..|.+++.+..+..-.+.++.+
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~ 70 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRL 70 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHH
Confidence 35688888899999999888888987655432221 1122334556677766554432223334433
No 351
>PRK07023 short chain dehydrogenase; Provisional
Probab=62.61 E-value=41 Score=29.31 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=35.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
+.+|+.++|.-|.++|......|.+++++...... . .....|.++..+..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~-~---~~~~~~~~~~~~~~ 52 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP-S---LAAAAGERLAEVEL 52 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch-h---hhhccCCeEEEEEe
Confidence 46899999999999999998899998877654321 1 13445767765544
No 352
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=62.59 E-value=20 Score=35.27 Aligned_cols=53 Identities=25% Similarity=0.267 Sum_probs=37.4
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
+...+| +.|+..+.|.-|+.+|..++.+|.+++++ . .++.+....+.+|++++
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~-d--~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT-E--VDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE-E--CChhhHHHHHhcCCEEc
Confidence 333455 45788999999999999999999986554 2 34455666666676543
No 353
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=62.54 E-value=54 Score=29.41 Aligned_cols=48 Identities=29% Similarity=0.378 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 154 ~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
+++..+|...+|..|.+++..|+.+|.+++.+.. ..++.+.++.+|+.
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 179 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAA 179 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCc
Confidence 4667778777799999999999999998655543 34677777778875
No 354
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=62.52 E-value=36 Score=31.87 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=40.3
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHH----HHhCCCEEEEeC
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRIL----LRAFGAEIILTD 209 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~----l~~~GA~Vv~v~ 209 (295)
.|.+. |.++.+..-.+|..++++.+++++|++++++.|+... ....+. .+..|+++...+
T Consensus 143 ~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 143 FGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred hCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 45443 2233333333799999999999999999999998542 333333 345788887765
No 355
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.36 E-value=60 Score=28.56 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=35.5
Q ss_pred CeEEEEeCC--CccHHHHHHHHHHcCCeEEEEECCCC---------CHH---HHHHHHhCCCEEEEeCCC
Q 022547 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPAST---------NLE---RRILLRAFGAEIILTDPE 211 (295)
Q Consensus 156 ~~~vv~aSs--GN~g~AlA~aa~~~Gi~~~ivvp~~~---------~~~---~~~~l~~~GA~Vv~v~~~ 211 (295)
+..+|+..+ |.-|.++|......|.+++++..... ... ....++.+|.+++.+..+
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 75 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEID 75 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECC
Confidence 356777766 47888899888889998777654311 111 123445568777766553
No 356
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.35 E-value=55 Score=29.08 Aligned_cols=33 Identities=27% Similarity=0.149 Sum_probs=24.8
Q ss_pred CeEEEEeCC--CccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSs--GN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..||+.++ +.-|.++|......|.+++++...
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 356777655 378999999988999998776543
No 357
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=62.35 E-value=1.1e+02 Score=28.05 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=46.9
Q ss_pred EEEEeCCCCCCC-chHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-----HHH
Q 022547 121 VAAKLESMEPCR-SVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-----LER 194 (295)
Q Consensus 121 I~~K~E~~nptG-S~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-----~~~ 194 (295)
|.+..|...--| +|=.|+. .+.....++|. +..+++-..++.. .-.-+..|+++..+ ++... .+.
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl-~LA~~l~~~g~----~v~f~~~~~~~~~---~~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCL-TLARALHAQGA----EVAFACKPLPGDL---IDLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHH-HHHHHHHHCCC----EEEEEeCCCCHHH---HHHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 666777654334 6777774 33333345665 2344444444332 22446789986664 54321 235
Q ss_pred HHHHHhCCCEEEEeCC
Q 022547 195 RILLRAFGAEIILTDP 210 (295)
Q Consensus 195 ~~~l~~~GA~Vv~v~~ 210 (295)
...++..+.++++++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 6677778899999987
No 358
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=62.19 E-value=34 Score=31.39 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 135 KDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 135 K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
--||..+.+..+.+.........+|+..+.||-|..+|.....+|.+++.+..
T Consensus 17 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 17 TGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred hHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 35788888888766544443345688999999999999999999999885544
No 359
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=62.15 E-value=47 Score=30.49 Aligned_cols=53 Identities=25% Similarity=0.252 Sum_probs=37.3
Q ss_pred CCCCCCeEEEEeCCCccHHHHHHHHHHcC-CeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKG-YKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 151 ~~~~g~~~vv~aSsGN~g~AlA~aa~~~G-i~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+.+++..+|.. +|..|.+++..|+.+| .+++++.. +..+.+.++.+|++-++
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~~ 217 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHVL 217 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEEE
Confidence 345566777776 5569999999999999 77665543 34566777888875443
No 360
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=62.05 E-value=52 Score=30.42 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=37.3
Q ss_pred CCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 152 ~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+|...+|. +.|..|.+++..|+.+|++++++.+. ..+.+.++.+|++-++
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 5677777775 47899999999999999976655432 3556666677775443
No 361
>CHL00194 ycf39 Ycf39; Provisional
Probab=62.03 E-value=27 Score=32.25 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=28.0
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+++|+.++|..|..++......|.++++++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 46889999999999999999999998888764
No 362
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=62.01 E-value=46 Score=29.03 Aligned_cols=34 Identities=29% Similarity=0.243 Sum_probs=28.6
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~ 189 (295)
+..+|+..+|.-|.++|......|.+++++....
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 4678888889999999999989999988886543
No 363
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=61.80 E-value=1.1e+02 Score=26.64 Aligned_cols=151 Identities=12% Similarity=0.158 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC--CC---------CHHH------HHHH
Q 022547 136 DRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA--ST---------NLER------RILL 198 (295)
Q Consensus 136 ~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~--~~---------~~~~------~~~l 198 (295)
...-.-.+..+..+|. +-+++..........+.--|+..|++++.+-.. .. +... ....
T Consensus 41 ~~~q~~~i~~~i~~~~----d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~ 116 (257)
T PF13407_consen 41 PEEQIEQIEQAISQGV----DGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLA 116 (257)
T ss_dssp HHHHHHHHHHHHHTTE----SEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----CEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHH
Confidence 3455567778888875 244555566655666677788899998887554 11 1111 2233
Q ss_pred HhCC--CEEEEeCCCCChH---HHHHHHHHHHHcCCCeEEecCC-CChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCch
Q 022547 199 RAFG--AEIILTDPEKGLR---GALDKAEEIVLNTPNAYMFQQF-DNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272 (295)
Q Consensus 199 ~~~G--A~Vv~v~~~~~~~---~a~~~a~~~a~~~~~~~~~~~~-~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtG 272 (295)
+.++ .+|.++.+..++. +..+-..+..++.++.-.+..+ ....... .......++++.- + +|.||+. +.
T Consensus 117 ~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~l~~~-~-~~~i~~~--~~ 191 (257)
T PF13407_consen 117 EKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEYPGVEIVDEYEYTDWDPE-DARQAIENLLQAN-P-VDAIIAC--ND 191 (257)
T ss_dssp HHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHCTTEEEEEEEEECTTSHH-HHHHHHHHHHHHT-T-EEEEEES--SH
T ss_pred HHhccCceEEeccCCCCchHHHHHHHHHHHHHhhcceeeeeeeeeccCCCHH-HHHHHHHHhhhcC-C-ceEEEeC--CC
Confidence 4455 5777664332332 2333333444444454443311 1111122 2333445666653 3 7777664 45
Q ss_pred HHHHHHHHHHHhcCC--CCEEEEeC
Q 022547 273 GTITGTGRFLKMMNK--EIKARILL 295 (295)
Q Consensus 273 gt~aGi~~~lk~~~~--~vkVigV~ 295 (295)
..+.|+..++++.+. ++.|+++|
T Consensus 192 ~~~~g~~~al~~~g~~~~~~v~g~d 216 (257)
T PF13407_consen 192 GMALGAAQALQQAGRAGKVIVVGFD 216 (257)
T ss_dssp HHHHHHHHHHHHTTCTTTSEEEEEE
T ss_pred hHHHHHHHHHHHcCCcccceeecCC
Confidence 566699999998763 46688875
No 364
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=61.51 E-value=17 Score=36.78 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=40.8
Q ss_pred CCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC------------------CCHHHHHHHHhCCCEEEEe
Q 022547 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS------------------TNLERRILLRAFGAEIILT 208 (295)
Q Consensus 153 ~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~------------------~~~~~~~~l~~~GA~Vv~v 208 (295)
..|+ .|+..++|-.|.+.|..++++|.+++|+-... ....+++.++.+|++++.-
T Consensus 135 ~~g~-~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTGK-RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCC-EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 3454 47889999999999999999999977764221 1235667788899987653
No 365
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=61.46 E-value=57 Score=28.89 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=35.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHH-hCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLR-AFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~-~~GA~Vv~v~~ 210 (295)
+..+|+.+++.-|.++|......|.+++++...+.. ....+.++ ..|.++..+..
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPL 66 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEc
Confidence 477888888899999999999999997766443221 11122333 34666655544
No 366
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=61.45 E-value=34 Score=30.40 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 137 RIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 137 R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+|..+.+..+.+.-........++..+.||-|..+|......|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 5667777776544323333356888999999999999999999988877664
No 367
>PRK07856 short chain dehydrogenase; Provisional
Probab=61.35 E-value=42 Score=29.51 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=27.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..||+.++|--|.++|......|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 477888888999999999998999988777553
No 368
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=61.34 E-value=64 Score=29.75 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=38.2
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcC-CeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKG-YKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~G-i~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
...+.+++..+|. ++|..|.+++..|+.+| .++++ +. ....+...++.+|++-+
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~~~ 215 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGATHT 215 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCCce
Confidence 3445667777775 56999999999999999 55444 32 35567777778887533
No 369
>PRK07102 short chain dehydrogenase; Provisional
Probab=61.32 E-value=65 Score=28.03 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=35.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHh-CCCEEEEeCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRA-FGAEIILTDP 210 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~-~~~~~l~~-~GA~Vv~v~~ 210 (295)
+.+|+.++|.-|.++|......|.+++++....... ...+.++. .+.++..+..
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHEL 58 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 568888889999999999999999987776542111 12223332 3556666554
No 370
>PRK08177 short chain dehydrogenase; Provisional
Probab=61.22 E-value=80 Score=27.17 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=27.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~ 189 (295)
..+|+..+|.-|.++|......|.+++++....
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 568888899999999999999999887776543
No 371
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.00 E-value=26 Score=31.18 Aligned_cols=112 Identities=15% Similarity=0.215 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC-CCCHHHHHHHHhCCC-EEEEeCCCCChHHHH
Q 022547 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA-STNLERRILLRAFGA-EIILTDPEKGLRGAL 218 (295)
Q Consensus 141 ~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~-~~~~~~~~~l~~~GA-~Vv~v~~~~~~~~a~ 218 (295)
+++....+.=.++++++ |.+-++| .|...|..|+..| +++-+=.. ..-..-.+.++.+|- +|++.-+++.
T Consensus 59 ~~vA~m~~~L~~~~g~~-VLEIGtG-sGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~----- 130 (209)
T COG2518 59 HMVARMLQLLELKPGDR-VLEIGTG-SGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS----- 130 (209)
T ss_pred HHHHHHHHHhCCCCCCe-EEEECCC-chHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc-----
Confidence 34444444444566644 7777777 5677888888888 33222111 112233445777777 5665544321
Q ss_pred HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCch
Q 022547 219 DKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272 (295)
Q Consensus 219 ~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtG 272 (295)
.|+--..+||-...+ ++..++=.-+++||. .--.+|+|+|++
T Consensus 131 ----------~G~~~~aPyD~I~Vt-aaa~~vP~~Ll~QL~-~gGrlv~PvG~~ 172 (209)
T COG2518 131 ----------KGWPEEAPYDRIIVT-AAAPEVPEALLDQLK-PGGRLVIPVGSG 172 (209)
T ss_pred ----------cCCCCCCCcCEEEEe-eccCCCCHHHHHhcc-cCCEEEEEEccC
Confidence 011111233322222 122333345688984 235788898843
No 372
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=60.88 E-value=1e+02 Score=28.12 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=38.5
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
+...+.+++..+|. ++|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 44556777777776 57889999999999999984444432 34566667777875
No 373
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=60.86 E-value=20 Score=31.92 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCCEEE-EcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 250 TGPEIWEDTLGCVDIFV-AAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 250 ~~~EI~~Ql~~~~d~vv-~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
...||+-++ +||.|| +++-.||.+.=.+.-++..+++.+|+|||
T Consensus 23 ~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiD 67 (206)
T PF04989_consen 23 AYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGID 67 (206)
T ss_dssp HHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEE
T ss_pred HHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEe
Confidence 455888887 677766 44555666655566677778899999997
No 374
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=60.72 E-value=59 Score=25.90 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=35.1
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCe-EEEEECCCCCHH----HHHHHHhCCCEEEEeCCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYK-LIVTMPASTNLE----RRILLRAFGAEIILTDPE 211 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~-~~ivvp~~~~~~----~~~~l~~~GA~Vv~v~~~ 211 (295)
..+|+..+|..|.+++......|.. ++++........ .++.++..|.++..+..+
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACD 61 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECC
Confidence 4577888888999999888888875 444443322211 135556678887766543
No 375
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=60.37 E-value=31 Score=33.95 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=39.9
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCC-----CCHHHHHHHHhCCCEEEEe
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-----TNLERRILLRAFGAEIILT 208 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~-----~~~~~~~~l~~~GA~Vv~v 208 (295)
.|+..++||.|.-+|..+.++|.+++++.... .....++.++..|.+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 47889999999999999999999998887642 2234456677889887643
No 376
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=60.36 E-value=1.1e+02 Score=29.40 Aligned_cols=59 Identities=24% Similarity=0.252 Sum_probs=40.2
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCC--eEEEEECCCCCHHHHHHHHhC--------CCEEEEeC
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGY--KLIVTMPASTNLERRILLRAF--------GAEIILTD 209 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi--~~~ivvp~~~~~~~~~~l~~~--------GA~Vv~v~ 209 (295)
...+++|++.+|...+|--|.+++..|+.+|+ ..++++ +....+++..+.+ ||+...++
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 45567777777777779999999989999876 223333 3356777777776 77644443
No 377
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=60.33 E-value=84 Score=29.98 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=7.8
Q ss_pred HHHHHHcCCeEEEEECC
Q 022547 172 AFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 172 A~aa~~~Gi~~~ivvp~ 188 (295)
+...+.+|-++.|+...
T Consensus 22 ~~~l~~~g~~~livtd~ 38 (366)
T PRK09423 22 GEYLKPLGKRALVIADE 38 (366)
T ss_pred HHHHHHcCCEEEEEECh
Confidence 33444455444454443
No 378
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=60.27 E-value=59 Score=29.55 Aligned_cols=92 Identities=12% Similarity=0.059 Sum_probs=42.3
Q ss_pred HHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHH-HHHHcCCCeE---EecCCCChHH
Q 022547 169 LGIAFVAAVK--GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE-EIVLNTPNAY---MFQQFDNMAN 242 (295)
Q Consensus 169 ~AlA~aa~~~--Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~-~~a~~~~~~~---~~~~~~n~~~ 242 (295)
..+.++++.+ |.+..-+...+.-..-++.....|-.|.++++. .+.++.+. .+.++. +.- +.++|.++..
T Consensus 70 ~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~---~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e 145 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGK---PEVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQ 145 (243)
T ss_pred HHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCC---HHHHHHHHHHHHHHh-CCEEEEEeCCCCCHHH
Confidence 4566666655 333111111111122333444567788888764 33333333 333333 322 2244443221
Q ss_pred HHHHHHHHHHHHHHhhC-CCCCEEEEcCCch
Q 022547 243 LKIHFDSTGPEIWEDTL-GCVDIFVAAIGTG 272 (295)
Q Consensus 243 ~~~Gy~t~~~EI~~Ql~-~~~d~vv~pvGtG 272 (295)
.. +|.+++. ..+|.|+++.|.-
T Consensus 146 ----~~----~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 146 ----RQ----ALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred ----HH----HHHHHHHhcCCCEEEEECCCc
Confidence 11 3444432 2588888888864
No 379
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=60.15 E-value=77 Score=31.03 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHcCCeEEEEECCCCCHHHH-H-H----------------------HHhCCCEEEEeCCCCChHHHHHH
Q 022547 165 GNTGLGIAFVAAVKGYKLIVTMPASTNLERR-I-L----------------------LRAFGAEIILTDPEKGLRGALDK 220 (295)
Q Consensus 165 GN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~-~-~----------------------l~~~GA~Vv~v~~~~~~~~a~~~ 220 (295)
|.+..+|+.+-+.+|.++.|++|..-..... . . ...-|.++++++...
T Consensus 20 ~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~-------- 91 (473)
T TIGR02095 20 ADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVEGVPVYFIDNPS-------- 91 (473)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEECCceEEEEECHH--------
Confidence 6888899999899999999999964321111 1 0 001134444444310
Q ss_pred HHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHHHH
Q 022547 221 AEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITG 277 (295)
Q Consensus 221 a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aG 277 (295)
+..+ ++.+|-+.+.+......-+...+.|++.+.+..||.|-+=---.+.++.
T Consensus 92 ---~~~r-~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~ 144 (473)
T TIGR02095 92 ---LFDR-PGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPA 144 (473)
T ss_pred ---HcCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHH
Confidence 1111 1223322233333232356777889888876789977766443444333
No 380
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=60.06 E-value=67 Score=28.59 Aligned_cols=53 Identities=19% Similarity=0.069 Sum_probs=32.3
Q ss_pred CeEEEEeCC--CccHHHHHHHHHHcCCeEEEEECC-C--CCHHHHHHHHhCCCEEEEe
Q 022547 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPA-S--TNLERRILLRAFGAEIILT 208 (295)
Q Consensus 156 ~~~vv~aSs--GN~g~AlA~aa~~~Gi~~~ivvp~-~--~~~~~~~~l~~~GA~Vv~v 208 (295)
+..+|+.++ +--|.++|......|.++++.... . ......+.++..+.+++.+
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFL 64 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEe
Confidence 466777754 568888888888899998765422 1 1233455555444444433
No 381
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=60.02 E-value=1.4e+02 Score=27.23 Aligned_cols=33 Identities=3% Similarity=0.017 Sum_probs=25.7
Q ss_pred CCCEEEEcCCchHHHHHHHHHHHhcC---CCCEEEEeC
Q 022547 261 CVDIFVAAIGTGGTITGTGRFLKMMN---KEIKARILL 295 (295)
Q Consensus 261 ~~d~vv~pvGtGgt~aGi~~~lk~~~---~~vkVigV~ 295 (295)
.+|.|||. +-..+.|+..++++.+ .++.|||+|
T Consensus 238 ~~~Ai~~~--~D~~A~g~~~al~~~g~vP~dvsvigfd 273 (327)
T TIGR02417 238 LPQALFTT--SYTLLEGVLDYMLERPLLDSQLHLATFG 273 (327)
T ss_pred CCcEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEEC
Confidence 48998886 4466779999999876 267899986
No 382
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=59.89 E-value=54 Score=29.25 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=47.9
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHH-------------HHHHHhCCCEEEEeCCCCChHHHHHHHHHH
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER-------------RILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~-------------~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~ 224 (295)
++...+.||-|.++|..-...|++++|--........ ......-+|+|++..-. |........++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP--~~a~~~v~~~l 80 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP--FEAIPDVLAEL 80 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc--HHHHHhHHHHH
Confidence 3667888999999999999999988876443221110 11123345777766543 55555666666
Q ss_pred HHcCCCeEEecC
Q 022547 225 VLNTPNAYMFQQ 236 (295)
Q Consensus 225 a~~~~~~~~~~~ 236 (295)
....++.+.++.
T Consensus 81 ~~~~~~KIvID~ 92 (211)
T COG2085 81 RDALGGKIVIDA 92 (211)
T ss_pred HHHhCCeEEEec
Confidence 654445566644
No 383
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=59.85 E-value=89 Score=27.62 Aligned_cols=50 Identities=32% Similarity=0.521 Sum_probs=37.0
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCC
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGA 203 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA 203 (295)
+.+.+++..+|...+|..|.+++..++..|++++++.+.. +.+.++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 4466777777776679999999999999999977665432 4555566775
No 384
>PRK06180 short chain dehydrogenase; Provisional
Probab=59.82 E-value=61 Score=29.03 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=35.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-CCCEEEEeC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIILTD 209 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~-~GA~Vv~v~ 209 (295)
+..+|+..+|.-|.+++......|.+++++... ..+.+.+.. .+.++..+.
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~ 56 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRS---EAARADFEALHPDRALARL 56 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC---HHHHHHHHhhcCCCeeEEE
Confidence 467899999999999999999999998777653 233333333 344454443
No 385
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.41 E-value=74 Score=30.28 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=21.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
.++|+.++.--|.++|..|+.-|-+++++..+
T Consensus 35 hi~itggS~glgl~la~e~~~~ga~Vti~ar~ 66 (331)
T KOG1210|consen 35 HILITGGSSGLGLALALECKREGADVTITARS 66 (331)
T ss_pred eEEEecCcchhhHHHHHHHHHccCceEEEecc
Confidence 34555555566677777788888777777664
No 386
>PRK07550 hypothetical protein; Provisional
Probab=59.34 E-value=1.2e+02 Score=28.74 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=31.9
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
|+..++++.|..++..+- .+-.-.|+++.-.-..-...++..|++++.++.
T Consensus 93 i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 93 VHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred EEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 555566677766555443 333345666664444445567889999998875
No 387
>PRK06197 short chain dehydrogenase; Provisional
Probab=59.27 E-value=50 Score=30.15 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=27.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..+|+.++|.-|.++|......|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 467888888889999998888889988777654
No 388
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=59.14 E-value=65 Score=27.79 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=39.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHH--HHHHHHhCCCEEEEeCCCCChHHHHHHHH
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE--RRILLRAFGAEIILTDPEKGLRGALDKAE 222 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~--~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~ 222 (295)
+.+|+.++|.-|.++|..-...|.++++......... ....+...+.++..+..+..-.+.++.+.
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 71 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEAL 71 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 5688888899999999988888998877765532111 11222234556665554322234444443
No 389
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=58.82 E-value=28 Score=28.89 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=28.9
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST 190 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~ 190 (295)
++|...+|+.|..++......|.+++++++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 367788899999999999999999999998644
No 390
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=58.81 E-value=66 Score=30.64 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=39.5
Q ss_pred cCCCCCCCeEEEEeCCC--ccHHHHHHHHHHcCCeEEEEECCCC--CHHHHH----HHHhCCCEEEEeC
Q 022547 149 SGDITPGKTVLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPAST--NLERRI----LLRAFGAEIILTD 209 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsG--N~g~AlA~aa~~~Gi~~~ivvp~~~--~~~~~~----~l~~~GA~Vv~v~ 209 (295)
.|.+. | .+|+-.+.+ |.+++++..++.+|++++++.|+.. +...++ ..+..|.++.+++
T Consensus 150 ~g~l~-g-~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 150 FGPLK-G-LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred hCCCC-C-CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 45543 2 234444554 8999999999999999999999853 233332 2344687777665
No 391
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=58.79 E-value=39 Score=34.32 Aligned_cols=53 Identities=11% Similarity=-0.024 Sum_probs=40.2
Q ss_pred EEEEeCC---CccHHHHHHHHHHcC-CeEEEEECCCC--CHHHHHHHHhCCCEEEEeCC
Q 022547 158 VLVEPTT---GNTGLGIAFVAAVKG-YKLIVTMPAST--NLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 158 ~vv~aSs---GN~g~AlA~aa~~~G-i~~~ivvp~~~--~~~~~~~l~~~GA~Vv~v~~ 210 (295)
.|+-.+. +|.+++++..++.+| ++++++.|... +...++.++..|+.+..+..
T Consensus 176 kVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d 234 (525)
T PRK13376 176 HIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSS 234 (525)
T ss_pred EEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 3455555 688999999999998 99999999864 44555666667888877653
No 392
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=58.72 E-value=72 Score=28.01 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=27.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..||+.++|.-|.++|......|.+++++-..
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 367899999999999999999999988776543
No 393
>PRK07577 short chain dehydrogenase; Provisional
Probab=58.72 E-value=1e+02 Score=26.44 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=29.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~ 189 (295)
+..+|+.++|-.|.++|......|.+++++....
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~ 37 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIARSA 37 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4678999999999999999999999988877653
No 394
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=58.69 E-value=63 Score=30.74 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=36.0
Q ss_pred EEEeCC--CccHHHHHHHHHHcCCeEEEEECCCC--CHHHHH----HHHhCCCEEEEeC
Q 022547 159 LVEPTT--GNTGLGIAFVAAVKGYKLIVTMPAST--NLERRI----LLRAFGAEIILTD 209 (295)
Q Consensus 159 vv~aSs--GN~g~AlA~aa~~~Gi~~~ivvp~~~--~~~~~~----~l~~~GA~Vv~v~ 209 (295)
|+-.+. .|.+++++.+++.+|++++++.|+.. +...+. ..+..|+++.++.
T Consensus 158 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 158 FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred EEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 444444 48999999999999999999999853 223332 2345788877665
No 395
>PRK06125 short chain dehydrogenase; Provisional
Probab=58.63 E-value=56 Score=28.80 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=26.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
+..||+.++|.-|.++|......|.+++++..
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 47788888899999999999999997776654
No 396
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=58.60 E-value=42 Score=32.52 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=28.4
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCC
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~ 189 (295)
+|-.-++|..|+.++.+|+.+|++++++-|..
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~ 34 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDA 34 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCC
Confidence 36667899999999999999999999998863
No 397
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=58.59 E-value=83 Score=24.66 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=32.4
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hCCCEEEEeCCCC-ChHHHHHHHHHHHHc
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILTDPEK-GLRGALDKAEEIVLN 227 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~-~~GA~Vv~v~~~~-~~~~a~~~a~~~a~~ 227 (295)
.+|+...+|++++.+|.+= -..+.+++.+.. ...+++. .+|...+..+... +.++.++.+.+.+.+
T Consensus 19 ~Ivv~T~sG~ta~~isk~R--P~~pIiavt~~~---~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~ 86 (117)
T PF02887_consen 19 AIVVFTESGRTARLISKYR--PKVPIIAVTPNE---SVARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKE 86 (117)
T ss_dssp EEEEE-SSSHHHHHHHHT---TSSEEEEEESSH---HHHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHhhC--CCCeEEEEcCcH---HHHhhhhcccceEEEEeccccccHHHHHHHHHHHHHH
Confidence 3455555576666555432 235555555532 3333333 3576666665543 445555555555444
No 398
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=58.47 E-value=1.2e+02 Score=30.04 Aligned_cols=133 Identities=7% Similarity=0.020 Sum_probs=64.3
Q ss_pred eEEEEeCCCccH-----HHHHHHHHHcCCeEEEEECC--CCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHH-HHHHHcC
Q 022547 157 TVLVEPTTGNTG-----LGIAFVAAVKGYKLIVTMPA--STNLERRILLRAFGAEIILTDPEKGLRGALDKA-EEIVLNT 228 (295)
Q Consensus 157 ~~vv~aSsGN~g-----~AlA~aa~~~Gi~~~ivvp~--~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a-~~~a~~~ 228 (295)
..+|++++++.| .+|+.+.+..|+++..+-|. ...+.... ...|....-.+.-....+.+... .+++++
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~--~~~g~~~~~ld~~~~~~~~v~~~~~~~~~~- 81 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHT--AATGRPSRNLDSWMMGEELVRALFARAAQG- 81 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHH--HHhCCCcccCCceeCCHHHHHHHHHHhccc-
Confidence 346666665433 44555567778888877663 22222222 23344322222110012333333 333333
Q ss_pred CCeEEecCCCChHH---HHHHHHHHHHHHHHhhCCCCCEEEEcCCc-hHHHHHHHHHHHhcCCCCEEEEe
Q 022547 229 PNAYMFQQFDNMAN---LKIHFDSTGPEIWEDTLGCVDIFVAAIGT-GGTITGTGRFLKMMNKEIKARIL 294 (295)
Q Consensus 229 ~~~~~~~~~~n~~~---~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGt-Ggt~aGi~~~lk~~~~~vkVigV 294 (295)
.+...+.+...... .... .....||.+.++ .|-.+|+.... +.+++.+..++....++++|.||
T Consensus 82 ~D~vlVEGagGl~~g~~~~~~-~~s~adiA~~l~-~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~Gv 149 (451)
T PRK01077 82 ADIAVIEGVMGLFDGAGSDPD-EGSTADIAKLLG-APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGV 149 (451)
T ss_pred CCEEEEECCCccccCCccCCC-CCCHHHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 24444432211000 0000 112347888873 44455555544 66788888888877667888776
No 399
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=58.30 E-value=70 Score=27.89 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+++.+|+.++|+.|.++|......|..++++...
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 4578899999999999999988899988776554
No 400
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=58.23 E-value=79 Score=27.92 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=34.6
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HhCCCEEEEeC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTD 209 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l-~~~GA~Vv~v~ 209 (295)
+..||+.++|.-|.++|......|.+++++... ..+.+.+ +.++.++..+.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVE 58 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEE
Confidence 477888888999999999999999997766443 2333333 33455554443
No 401
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=58.21 E-value=1.3e+02 Score=26.56 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=24.0
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEE
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivv 186 (295)
..+|+..+|.-|.++|......|.++++..
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~~V~~~~ 32 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGYRVVLHY 32 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCCeEEEEc
Confidence 457888888899999998888888776654
No 402
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.13 E-value=74 Score=28.58 Aligned_cols=45 Identities=24% Similarity=0.211 Sum_probs=27.9
Q ss_pred CeEEEEeCCC--ccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh
Q 022547 156 KTVLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA 200 (295)
Q Consensus 156 ~~~vv~aSsG--N~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~ 200 (295)
+..||+..++ .-|+++|......|.+++++-.........+.+..
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~ 53 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAA 53 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHh
Confidence 4667777665 57788888888899987665443211234444443
No 403
>PRK07201 short chain dehydrogenase; Provisional
Probab=58.00 E-value=40 Score=34.42 Aligned_cols=56 Identities=21% Similarity=0.184 Sum_probs=38.3
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEEEEeCC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~Vv~v~~ 210 (295)
++..+|+.++|.-|.++|..-...|.+++++...... ....+.++..|.++..+..
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 427 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTC 427 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3467888888999999999888899988877654211 1223344556777766544
No 404
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.99 E-value=1.6e+02 Score=27.21 Aligned_cols=58 Identities=29% Similarity=0.331 Sum_probs=40.6
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+.+.+++++..+|. ++|-.|.+++..|+.+|.+.++++.. ...+...++.+|++-++
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 356677888888886 45778999999999999984333322 34566666777876544
No 405
>PRK05854 short chain dehydrogenase; Provisional
Probab=57.99 E-value=48 Score=30.61 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=41.2
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhC--CCEEEEeCCCC-ChHHHHHHHHHHHHc
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAF--GAEIILTDPEK-GLRGALDKAEEIVLN 227 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~--GA~Vv~v~~~~-~~~~a~~~a~~~a~~ 227 (295)
+..||+.++|--|.++|..-...|.+++++...... ...++.++.. +.++.++..+. +.++..+.+.++.++
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 467888888888888888888899988777654211 1122333322 44555443322 344444444444443
No 406
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=57.79 E-value=63 Score=28.63 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=36.3
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHhCC
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK-LIVTMPASTNLERRILLRAFG 202 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~-~~ivvp~~~~~~~~~~l~~~G 202 (295)
..+.+.+++..+|. +.|..|.++...|+.+|.+ ++++. .+.++...++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~~---~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGVD---PDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEC---CCHHHHHHHHHcC
Confidence 34566777777776 5788999999999999998 54432 2445666666666
No 407
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=57.75 E-value=64 Score=30.63 Aligned_cols=55 Identities=29% Similarity=0.495 Sum_probs=39.7
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+++|+..+|. +.|..|.+++..|+.+|...++++.. ...+.+.++.+|++-++
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 567778777777 67999999999999999854444432 33477777888885443
No 408
>PRK05875 short chain dehydrogenase; Provisional
Probab=57.70 E-value=58 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=27.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
++.||+.++|.-|.++|......|.+++++...
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 467899988999999999999999987776543
No 409
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=57.17 E-value=1.3e+02 Score=26.16 Aligned_cols=47 Identities=11% Similarity=-0.178 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCC--CCEEEEeC
Q 022547 246 HFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK--EIKARILL 295 (295)
Q Consensus 246 Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~--~vkVigV~ 295 (295)
++. ...+++++..+.+|.||++ +...+.|+..++++.+. ++.|+|+|
T Consensus 173 ~~~-~~~~~l~~~~~~~~ai~~~--~d~~a~g~~~~l~~~g~~~dv~v~g~d 221 (275)
T cd06317 173 AQV-AMEALITKFGDDIDGVYAG--DDNMARGALNAAKEAGLAGGIVIVGAN 221 (275)
T ss_pred HHH-HHHHHHHhCCCCccEEEEC--CCcHHHHHHHHHHhcCCcCCcEEEEeC
Confidence 443 3456666521468999864 44557899999998875 79999986
No 410
>PRK12746 short chain dehydrogenase; Provisional
Probab=57.07 E-value=75 Score=27.73 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=35.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~--~~~~~l~~~GA~Vv~v~~ 210 (295)
++.+|+.++|--|.++|......|.++++....+... .....+...|.++..+..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEA 63 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 4678999999999999999888999877654332211 112233444666655543
No 411
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.02 E-value=63 Score=28.78 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=28.1
Q ss_pred CeEEEEeC--CCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH
Q 022547 156 KTVLVEPT--TGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR 199 (295)
Q Consensus 156 ~~~vv~aS--sGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~ 199 (295)
+..||+.. ++--|+++|......|.++++.........+.+.+.
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~ 52 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMA 52 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHH
Confidence 36677774 456788888888889999877543222233444443
No 412
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=57.02 E-value=50 Score=28.66 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=38.4
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHc
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLN 227 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~ 227 (295)
+.|.-.|||-+|.++|.++...|..++++.....-+. -.|.+++.+.. .++-.+.+.+...+
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~ 82 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPS 82 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCc
Confidence 4456678899999999999999999999887632111 24667777764 45555555555444
No 413
>PRK09701 D-allose transporter subunit; Provisional
Probab=56.93 E-value=1.6e+02 Score=26.93 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=30.6
Q ss_pred HHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCC--CCEEEEeC
Q 022547 250 TGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK--EIKARILL 295 (295)
Q Consensus 250 ~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~--~vkVigV~ 295 (295)
...+++++- +.+|.|++. +...+.|+..++++.+. ++.|+|+|
T Consensus 206 ~~~~ll~~~-~~~~~I~~~--~d~~A~g~~~al~~~G~~~dv~vvg~d 250 (311)
T PRK09701 206 VATNVLQRN-PNIKAIYCA--NDTMAMGVAQAVANAGKTGKVLVVGTD 250 (311)
T ss_pred HHHHHHHhC-CCCCEEEEC--CcchHHHHHHHHHHcCCCCCEEEEEeC
Confidence 445666653 468888755 44577789999988654 68899986
No 414
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=56.78 E-value=56 Score=30.13 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=26.3
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..||+.++|--|.++|......|.+++++...
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACRN 39 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 467888888888889888888889887776543
No 415
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=56.73 E-value=46 Score=31.80 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=35.2
Q ss_pred EEEeCC-CccHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHH----hCCCEEEEeC
Q 022547 159 LVEPTT-GNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLR----AFGAEIILTD 209 (295)
Q Consensus 159 vv~aSs-GN~g~AlA~aa~~~Gi~~~ivvp~~~--~~~~~~~l~----~~GA~Vv~v~ 209 (295)
|+-.+. .|.+.+++.+++++|++++++.|+.. +..-+..++ ..|+++.++.
T Consensus 157 v~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 157 VVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 344444 69999999999999999999999853 333333332 3576666554
No 416
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=56.71 E-value=1.3e+02 Score=27.45 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=26.1
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
|+..|||.++.--|+++|..-..+|.+++|.-..
T Consensus 8 gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~ 41 (270)
T KOG0725|consen 8 GKVALVTGGSSGIGKAIALLLAKAGAKVVITGRS 41 (270)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3466788777667788888888888888887654
No 417
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=56.57 E-value=40 Score=31.74 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=28.4
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN 191 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~ 191 (295)
+..+.+-.+|.+.++..+++.+|+.++++.|....
T Consensus 155 ~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 155 QLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 44444444799999999999999999999998754
No 418
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=56.51 E-value=1.2e+02 Score=26.34 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=37.3
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCC
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGA 203 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA 203 (295)
+.+.+.+|+..+|....|-.|.+++..++.+|++++++.+ ...+.+.++.+|+
T Consensus 98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~ 150 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAG---SPEKRDFLRELGI 150 (288)
T ss_pred HHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCC
Confidence 3445667767667666788999999999999998655544 2345556666776
No 419
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=56.27 E-value=86 Score=32.01 Aligned_cols=49 Identities=29% Similarity=0.243 Sum_probs=32.4
Q ss_pred eEEEEeCCCccH---HHHHHHHHHcCCeEEEEECCCCCHH----HHHHHHhCCCEE
Q 022547 157 TVLVEPTTGNTG---LGIAFVAAVKGYKLIVTMPASTNLE----RRILLRAFGAEI 205 (295)
Q Consensus 157 ~~vv~aSsGN~g---~AlA~aa~~~Gi~~~ivvp~~~~~~----~~~~l~~~GA~V 205 (295)
.++|.++.||.| ..+|.....+|+++.|+++...... ..+.++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 567878888664 4555666667999999997643332 244566677654
No 420
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=56.11 E-value=1.3e+02 Score=25.93 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=35.6
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCC
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFG 202 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~G 202 (295)
.+.+++|+..+|....|..|.+++..|+.+|++.+++... ..+.+.++..|
T Consensus 103 ~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~ 153 (293)
T cd05195 103 LARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGS---EEKREFLRELG 153 (293)
T ss_pred HhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHhC
Confidence 3556777777777678889999999999999986655442 24444444444
No 421
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.04 E-value=1e+02 Score=27.27 Aligned_cols=43 Identities=7% Similarity=-0.084 Sum_probs=31.0
Q ss_pred HHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCC-CCEEEEeC
Q 022547 250 TGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK-EIKARILL 295 (295)
Q Consensus 250 ~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~-~vkVigV~ 295 (295)
...+++++ .+.+|.||+. +..++.|+..++++.+. ++.|+|+|
T Consensus 173 ~~~~~l~~-~~~~~ai~~~--nd~~a~g~~~al~~~g~~di~vvgfd 216 (272)
T cd06313 173 IWETWLTK-YPQLDGAFCH--NDSMALAAYQIMKAAGRTKIVIGGVD 216 (272)
T ss_pred HHHHHHHh-CCCCCEEEEC--CCcHHHHHHHHHHHcCCCceEEEeec
Confidence 44455554 2468988885 44677899999988765 78999986
No 422
>PRK06057 short chain dehydrogenase; Provisional
Probab=55.98 E-value=1.2e+02 Score=26.61 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=35.8
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHH-HHHhCCCEEEEeCC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRI-LLRAFGAEIILTDP 210 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~-~l~~~GA~Vv~v~~ 210 (295)
+++.+|+..+|.-|.+++......|.+++++... ..+.+ .....+.+++.++-
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~D~ 60 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDID---PEAGKAAADEVGGLFVPTDV 60 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHHcCCcEEEeeC
Confidence 3477899999999999999999999988777543 22222 22334555555554
No 423
>PRK12742 oxidoreductase; Provisional
Probab=55.91 E-value=83 Score=27.05 Aligned_cols=53 Identities=26% Similarity=0.234 Sum_probs=36.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l-~~~GA~Vv~v~~ 210 (295)
+..||+.++|.-|.++|......|.+++++.... ..+.+.+ ...|++.+.++-
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQETGATAVQTDS 60 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHhCCeEEecCC
Confidence 4778898889999999999999999877654432 2333333 445777665554
No 424
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=55.84 E-value=66 Score=27.55 Aligned_cols=63 Identities=25% Similarity=0.260 Sum_probs=40.1
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKA 221 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a 221 (295)
||+.++|-.|..+|......|.+++++.....+ ......++..|+++..+..+..-.+.++.+
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 66 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAV 66 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHH
Confidence 678888899999999988889987776554311 123345566787776554432223344443
No 425
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.84 E-value=73 Score=28.30 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=22.9
Q ss_pred CeEEEEeC--CCccHHHHHHHHHHcCCeEEEEE
Q 022547 156 KTVLVEPT--TGNTGLGIAFVAAVKGYKLIVTM 186 (295)
Q Consensus 156 ~~~vv~aS--sGN~g~AlA~aa~~~Gi~~~ivv 186 (295)
+..||+.. ++--|.++|......|.+++++-
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEec
Confidence 35677776 56678888888888899877654
No 426
>PRK06348 aspartate aminotransferase; Provisional
Probab=55.66 E-value=1.5e+02 Score=28.09 Aligned_cols=81 Identities=14% Similarity=0.170 Sum_probs=42.2
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC--CCChHHHHHHHHHHHHcCCCeEEecC
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP--EKGLRGALDKAEEIVLNTPNAYMFQQ 236 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~--~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (295)
|+..+++.+|..++..+- .+-.-.|+++...-..-...++..|++++.++. +.++.-..+...+..++....+++..
T Consensus 92 i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~ 170 (384)
T PRK06348 92 IMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNS 170 (384)
T ss_pred EEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeC
Confidence 566666777766655543 222224555654444556677778999888753 11221112222222223345666654
Q ss_pred CCCh
Q 022547 237 FDNM 240 (295)
Q Consensus 237 ~~n~ 240 (295)
.+||
T Consensus 171 p~NP 174 (384)
T PRK06348 171 PNNP 174 (384)
T ss_pred CCCC
Confidence 4454
No 427
>PRK06202 hypothetical protein; Provisional
Probab=55.59 E-value=15 Score=32.38 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=28.8
Q ss_pred CCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEeC
Q 022547 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 261 ~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV~ 295 (295)
....+=+++|+|....-++..++..+++.+|+|||
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD 95 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAID 95 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEc
Confidence 34677889999998888887777778889999997
No 428
>PRK06914 short chain dehydrogenase; Provisional
Probab=55.57 E-value=1.1e+02 Score=27.27 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=27.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+..+|+.++|-.|.++|......|.+++++...
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 367899999999999999988899998877654
No 429
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=55.53 E-value=39 Score=28.38 Aligned_cols=49 Identities=31% Similarity=0.357 Sum_probs=39.4
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeC
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~ 209 (295)
.++..++||-|...+.++..+|.+.+++ +....+++.++..++..+.++
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEET
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEc
Confidence 4778889999999999999999986665 235677888888999887774
No 430
>PRK07832 short chain dehydrogenase; Provisional
Probab=55.22 E-value=45 Score=29.76 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=33.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhCCCEE
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEI 205 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~-~~~~~~l~~~GA~V 205 (295)
+.+|+.++|..|.++|......|.+++++...... ......++..|+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~ 51 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTV 51 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence 46888888999999999999999987766543211 11233455566654
No 431
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=55.10 E-value=46 Score=29.24 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHHHHH----hhC------CCCCEEEEcCC-chHHH----HHHHHHHHhcCCCCEEEEe
Q 022547 238 DNMANLKIHFDSTGPEIWE----DTL------GCVDIFVAAIG-TGGTI----TGTGRFLKMMNKEIKARIL 294 (295)
Q Consensus 238 ~n~~~~~~Gy~t~~~EI~~----Ql~------~~~d~vv~pvG-tGgt~----aGi~~~lk~~~~~vkVigV 294 (295)
+.-.+|..||.+.+.++.+ ++. ..+|.|++..| +|||= .=++..+++.+|+..++++
T Consensus 90 g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~ 161 (216)
T PF00091_consen 90 GSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISF 161 (216)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEE
T ss_pred cccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeec
Confidence 3344566688766544433 221 34666665544 23333 4455667778888877765
No 432
>PRK07060 short chain dehydrogenase; Provisional
Probab=55.06 E-value=1.1e+02 Score=26.40 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=37.1
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l-~~~GA~Vv~v~~ 210 (295)
++.+|+..+|.-|..++......|.+++++... ..+.+.+ ...+.+++.++-
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDV 62 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecC
Confidence 467888888999999999999999987776543 2333333 345777766654
No 433
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=55.00 E-value=1.7e+02 Score=26.79 Aligned_cols=55 Identities=29% Similarity=0.319 Sum_probs=38.6
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHhCCCEEEEe
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK-LIVTMPASTNLERRILLRAFGAEIILT 208 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~-~~ivvp~~~~~~~~~~l~~~GA~Vv~v 208 (295)
..+.+++..+|. ++|..|.++...|+.+|++ ++++.. ...+.+.++.+|++-++.
T Consensus 155 ~~~~~~~~vlI~-g~g~~g~~~~~lA~~~G~~~v~~~~~---~~~~~~~l~~~g~~~~~~ 210 (343)
T cd08236 155 AGITLGDTVVVI-GAGTIGLLAIQWLKILGAKRVIAVDI---DDEKLAVARELGADDTIN 210 (343)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCCCEEec
Confidence 345677677777 5688999999999999998 544433 245666778889854443
No 434
>PRK12829 short chain dehydrogenase; Provisional
Probab=54.55 E-value=86 Score=27.42 Aligned_cols=34 Identities=29% Similarity=0.240 Sum_probs=28.6
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+++.+|+..+|..|+.+|......|.+++++...
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 3477899999999999999999999997776653
No 435
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.51 E-value=1.2e+02 Score=27.44 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=32.5
Q ss_pred CeEEEEeCC--CccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HhCCCE-EEEeCC
Q 022547 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAE-IILTDP 210 (295)
Q Consensus 156 ~~~vv~aSs--GN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l-~~~GA~-Vv~v~~ 210 (295)
+..||+.++ +--|+++|......|.++++.........+++.+ +.+|.+ .+.++-
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv 64 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDV 64 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecC
Confidence 466777765 4578888888888999887765432112344444 344554 333443
No 436
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=54.51 E-value=66 Score=30.47 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=32.0
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
|+..+++..++.++..+....-+-.|+++.-.-..-...++.+|++++.++.
T Consensus 94 I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 94 ISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred EEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 5555566677665555443332224555654445556677889999998864
No 437
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=54.47 E-value=34 Score=32.65 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=36.3
Q ss_pred CCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 153 ~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
++|++.+|. ++|.-|.+++..|+.+|.+++++... +..+.+.++.+|++.++
T Consensus 177 ~~g~~VlV~-G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKRLGVN-GLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCEEEEE-cccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 456665554 56889999999999999985555332 23446666788987544
No 438
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.42 E-value=1.4e+02 Score=26.65 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=38.1
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv 206 (295)
+.+.+.+|...+|...+|..|.+++..++.+|+++++.. ...+.+.++.+|++-+
T Consensus 135 ~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~----~~~~~~~~~~~g~~~~ 189 (325)
T cd08271 135 KKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC----SKRNFEYVKSLGADHV 189 (325)
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE----cHHHHHHHHHcCCcEE
Confidence 345566777777777777899999999999999865543 2245555566776543
No 439
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=54.15 E-value=49 Score=31.51 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=31.5
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
++..++|..|..++..+...+-.-.|++|..+-......++..|++++.++-
T Consensus 49 ~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 49 VLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (375)
T ss_pred EEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 5556666666555443322222235666766666667777777888887764
No 440
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.84 E-value=1.6e+02 Score=26.16 Aligned_cols=54 Identities=30% Similarity=0.446 Sum_probs=37.8
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~V 205 (295)
.+.+.+++..+|...+|..|.+++..++..|.+.+++... ..+.+.++.+|++-
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 192 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRT---SEKRDALLALGAAH 192 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCCE
Confidence 4455566677777777999999999999999987666443 34555555566543
No 441
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=53.83 E-value=1.8e+02 Score=26.64 Aligned_cols=58 Identities=33% Similarity=0.468 Sum_probs=42.8
Q ss_pred HHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 147 ~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
...+.+++++..+|.+ +|-.|.+++..|+.+|++.++++. ....+...++.+|++-++
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~i 211 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASD--FSPERRALALAMGADIVV 211 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCcEEE
Confidence 3455667777777774 688999999999999998666554 356788888889985433
No 442
>PRK07825 short chain dehydrogenase; Provisional
Probab=53.78 E-value=1.1e+02 Score=27.25 Aligned_cols=52 Identities=17% Similarity=0.024 Sum_probs=34.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HhCC-CEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFG-AEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l-~~~G-A~Vv~v~~ 210 (295)
+..+|+..+|.-|.++|......|.+++++... ..+.+.+ +..+ .+++.++-
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~~D~ 59 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLD---EALAKETAAELGLVVGGPLDV 59 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEccC
Confidence 467899999999999999988899997776542 3333322 3334 45555553
No 443
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=53.45 E-value=84 Score=29.52 Aligned_cols=56 Identities=21% Similarity=0.153 Sum_probs=36.9
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
.+..++|+..+|. ++|-.|.+++.+|+.+|.+.+++... +..+...++.+|++.++
T Consensus 175 ~~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 175 FGLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDYL 230 (357)
T ss_pred cccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEEe
Confidence 3444566666665 67889999999999999986655432 22333445668886443
No 444
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=53.36 E-value=1.3e+02 Score=28.02 Aligned_cols=54 Identities=31% Similarity=0.468 Sum_probs=44.9
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
+.+.+++|.+.+|-+..|--|..+.-.|+..|-.++.... ..+|.+..+..|++
T Consensus 140 e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~ 193 (336)
T KOG1197|consen 140 EAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAE 193 (336)
T ss_pred HhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCc
Confidence 4566788889999999999999999999999987666544 45888888899998
No 445
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=53.28 E-value=1.4e+02 Score=25.10 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=42.1
Q ss_pred EEEEeCC--CccHHHHHHHHHHcCCeEEEEE-----------CCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHH
Q 022547 158 VLVEPTT--GNTGLGIAFVAAVKGYKLIVTM-----------PAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (295)
Q Consensus 158 ~vv~aSs--GN~g~AlA~aa~~~Gi~~~ivv-----------p~~-~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~ 223 (295)
.++..++ ||..-+++-+....++++++++ +.. +.......++.++-....+....+. ..+++|.+
T Consensus 61 ~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~ 139 (157)
T TIGR03845 61 AILMQSSGLGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGIPYTIPREPEEA-KLIEKAIS 139 (157)
T ss_pred EEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCCCeEEeCCHHHH-HHHHHHHH
Confidence 3555555 4766666665557899999998 431 1112222334455445555443345 67777777
Q ss_pred HHHcCCCeEE
Q 022547 224 IVLNTPNAYM 233 (295)
Q Consensus 224 ~a~~~~~~~~ 233 (295)
.+.+.++.++
T Consensus 140 ~a~~~~gPv~ 149 (157)
T TIGR03845 140 DAYENSRPVA 149 (157)
T ss_pred HHHhCCCCEE
Confidence 6655444433
No 446
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=53.21 E-value=34 Score=32.55 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=35.8
Q ss_pred EEEeCCC--ccHHHHHHHHHHcCCeEEEEECCCCC--HHHH----HHHHhCCCEEEEeC
Q 022547 159 LVEPTTG--NTGLGIAFVAAVKGYKLIVTMPASTN--LERR----ILLRAFGAEIILTD 209 (295)
Q Consensus 159 vv~aSsG--N~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~----~~l~~~GA~Vv~v~ 209 (295)
|.-.+.+ |.+++++.+++.+|++++++.|+... ...+ +..+..|+++.+++
T Consensus 159 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 159 YVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred EEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 4444554 78999999999999999999998542 2222 12344688887765
No 447
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=53.11 E-value=86 Score=31.76 Aligned_cols=50 Identities=22% Similarity=0.146 Sum_probs=39.8
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
.++..+.|..|++.+..++.+|..++++- ....+++..+.+|++.+.++.
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d---~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFD---TRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHcCCeEEeccc
Confidence 46777899999999999999998755542 345688888999999877763
No 448
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=52.92 E-value=1.5e+02 Score=25.58 Aligned_cols=41 Identities=10% Similarity=-0.023 Sum_probs=29.8
Q ss_pred HHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcC----CCCEEEEeC
Q 022547 252 PEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN----KEIKARILL 295 (295)
Q Consensus 252 ~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~----~~vkVigV~ 295 (295)
.+++++ .+.+|.||++ +...+.|+.+++++.+ .++.|+|+|
T Consensus 168 ~~~l~~-~~~~~ai~~~--~~~~a~g~~~al~~~g~~~p~~v~v~g~d 212 (267)
T cd06284 168 RRLLAL-PDRPTAIFCF--SDEMAIGAISALKELGLRVPEDISVVGFD 212 (267)
T ss_pred HHHHhC-CCCCcEEEEc--CcHHHHHHHHHHHHcCCCCccceeEEEeC
Confidence 345544 3468999987 5566789999999876 367899886
No 449
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.54 E-value=1.2e+02 Score=26.90 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=22.7
Q ss_pred CeEEEEeCCCc--cHHHHHHHHHHcCCeEEEEEC
Q 022547 156 KTVLVEPTTGN--TGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 156 ~~~vv~aSsGN--~g~AlA~aa~~~Gi~~~ivvp 187 (295)
+..||+..+++ -|.++|......|.++++...
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r 42 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQ 42 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeC
Confidence 46677777764 567777777778998776543
No 450
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=52.41 E-value=80 Score=28.92 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN 191 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~ 191 (295)
|++.+|+..+|.-|..++......|.++++.+.....
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTD 41 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 3578899999999999999888889998877765433
No 451
>PRK07024 short chain dehydrogenase; Provisional
Probab=52.33 E-value=62 Score=28.51 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=27.1
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
++.+|+.++|--|.++|......|.+++++...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~ 35 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARR 35 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888889999999999998899987776543
No 452
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=52.31 E-value=1.2e+02 Score=28.70 Aligned_cols=56 Identities=34% Similarity=0.410 Sum_probs=39.6
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhC-CCEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAF-GAEII 206 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~-GA~Vv 206 (295)
+.+.+.+++..+|. ++|-.|.+++..|+.+|.+.++++.. .+++.+.++.+ |++++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEE
Confidence 34556677676666 56888999999999999864444432 35788888887 66544
No 453
>PRK10490 sensor protein KdpD; Provisional
Probab=52.29 E-value=1.1e+02 Score=33.07 Aligned_cols=109 Identities=12% Similarity=0.009 Sum_probs=62.2
Q ss_pred CCeEEEEeCCCccH----HHHHHHHHHcCCeEEE-EECCC----CCH-------HHHHHHHhCCCEEEEeCCCCChHHHH
Q 022547 155 GKTVLVEPTTGNTG----LGIAFVAAVKGYKLIV-TMPAS----TNL-------ERRILLRAFGAEIILTDPEKGLRGAL 218 (295)
Q Consensus 155 g~~~vv~aSsGN~g----~AlA~aa~~~Gi~~~i-vvp~~----~~~-------~~~~~l~~~GA~Vv~v~~~~~~~~a~ 218 (295)
+++++|+-+++-++ +.-+.+|.+++-+.++ +|-.. .+. ..+++.+.+||+++.+.+. +..++
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~-dva~~- 327 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP-AEEKA- 327 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-CHHHH-
Confidence 34678888887665 3445667778877664 33321 111 1234557799998888764 33333
Q ss_pred HHHHHHHHcCC-CeEEecCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCC
Q 022547 219 DKAEEIVLNTP-NAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIG 270 (295)
Q Consensus 219 ~~a~~~a~~~~-~~~~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvG 270 (295)
..+++++.+ ..+.+.+..... | ...+++...+.+.. +.+|..|++..
T Consensus 328 --i~~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 --VLRYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred --HHHHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 234444432 234455443321 2 12346777888886 67888888643
No 454
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=52.29 E-value=41 Score=32.07 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=36.3
Q ss_pred EEEEeCCC--ccHHHHHHHHHHcCCeEEEEECCCCC--HHHHH----HHHhCCCEEEEeC
Q 022547 158 VLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPASTN--LERRI----LLRAFGAEIILTD 209 (295)
Q Consensus 158 ~vv~aSsG--N~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~~----~l~~~GA~Vv~v~ 209 (295)
.|.-.+.+ |.++++..+++.+|++++++.|+... ....+ ..+..|+++..++
T Consensus 158 ~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 158 TLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 34445554 89999999999999999999998642 22222 2345677777665
No 455
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.96 E-value=1.6e+02 Score=25.61 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=26.9
Q ss_pred CCCCEEEEcCCchHHHHHHHHHHHhcC----CCCEEEEeC
Q 022547 260 GCVDIFVAAIGTGGTITGTGRFLKMMN----KEIKARILL 295 (295)
Q Consensus 260 ~~~d~vv~pvGtGgt~aGi~~~lk~~~----~~vkVigV~ 295 (295)
..+++||+ .+...+.|+..++++.+ .++.|+|+|
T Consensus 171 ~~~~ai~~--~~d~~a~g~~~~l~~~g~~~p~di~iig~d 208 (263)
T cd06280 171 ERPEALVA--SNGLLLLGALRAVRAAGLRIPQDLALAGFD 208 (263)
T ss_pred CCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCcEEEEEeC
Confidence 36888887 46677889999999876 468999986
No 456
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.96 E-value=87 Score=28.18 Aligned_cols=48 Identities=25% Similarity=0.226 Sum_probs=30.1
Q ss_pred CeEEEEeCC--CccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HhCCC
Q 022547 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGA 203 (295)
Q Consensus 156 ~~~vv~aSs--GN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l-~~~GA 203 (295)
+..||+.++ +.-|.++|......|.+++++-.......+++.+ +.+|.
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~ 61 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA 61 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC
Confidence 356777765 5689999999999999877654322123444444 33454
No 457
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=51.90 E-value=1.3e+02 Score=28.15 Aligned_cols=109 Identities=15% Similarity=0.072 Sum_probs=68.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (295)
.+|..-+-|+-|+++|..++.+|++++.+=|.... ...|.+ .+ ++++ +.++. +.+.++-
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~-------~~~~~~--~~----~l~e-------ll~~s-Dvv~lh~ 204 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKN-------KNEEYE--RV----SLEE-------LLKTS-DIISIHA 204 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccc-------cccCce--ee----cHHH-------HhhcC-CEEEEeC
Confidence 45777888999999999999999998877553211 011111 11 1222 23332 4444433
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHH--HHHHHHHHhcCCCCEEEEeC
Q 022547 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI--TGTGRFLKMMNKEIKARILL 295 (295)
Q Consensus 237 ~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~--aGi~~~lk~~~~~vkVigV~ 295 (295)
-.++. -+.-+..|.++++ +++.+++-+|=|+.+ ..+..+++.. ++. .|.|
T Consensus 205 Plt~~----T~~li~~~~~~~M--k~~a~lIN~aRG~vVDe~AL~~AL~~g--~i~-AaLD 256 (311)
T PRK08410 205 PLNEK----TKNLIAYKELKLL--KDGAILINVGRGGIVNEKDLAKALDEK--DIY-AGLD 256 (311)
T ss_pred CCCch----hhcccCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHcC--CeE-EEEe
Confidence 22222 2345777888888 678999999999987 6777888752 455 4443
No 458
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=51.86 E-value=82 Score=29.49 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=35.3
Q ss_pred CCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 150 g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
+.+.+++..+|. ++|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 183 ~~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~~ 234 (367)
T cd08263 183 ADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGAT 234 (367)
T ss_pred ccCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCc
Confidence 344566677776 57889999999999999984444332 33555555666764
No 459
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=51.78 E-value=1.1e+02 Score=26.27 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=33.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l-~~~GA~Vv~v~~ 210 (295)
++.+|+..+|.-|.+++......|..+++.... ..+.+.+ ...|.++..+..
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~ 59 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTR---VEKLEALAAELGERVKIFPA 59 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC---HHHHHHHHHHhCCceEEEEc
Confidence 467888888999999999998899865444322 2333332 344655554443
No 460
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.67 E-value=1.5e+02 Score=29.23 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=46.4
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHH----HHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEe
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL----LRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMF 234 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~----l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~ 234 (295)
.+..++|-.++.++..+- ++---+|+++...-...... ++.+|++|.+++...+. +.++.+ ..++...+|+
T Consensus 79 av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~-~~l~~~---I~~~Tk~I~~ 153 (432)
T PRK06702 79 AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA-DEIVAL---ANDKTKLVYA 153 (432)
T ss_pred EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCH-HHHHHh---CCcCCeEEEE
Confidence 466788888777777654 33334666676544433333 67889999999753222 333333 2233467777
Q ss_pred cCCCChH
Q 022547 235 QQFDNMA 241 (295)
Q Consensus 235 ~~~~n~~ 241 (295)
....||.
T Consensus 154 e~pgnP~ 160 (432)
T PRK06702 154 ESLGNPA 160 (432)
T ss_pred EcCCCcc
Confidence 6666665
No 461
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=51.60 E-value=40 Score=32.14 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=36.1
Q ss_pred EEEeCCC--ccHHHHHHHHHHcCCeEEEEECCCCC--HHHH----HHHHhCCCEEEEeC
Q 022547 159 LVEPTTG--NTGLGIAFVAAVKGYKLIVTMPASTN--LERR----ILLRAFGAEIILTD 209 (295)
Q Consensus 159 vv~aSsG--N~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~----~~l~~~GA~Vv~v~ 209 (295)
|.-.+.+ |.+.++..+++.+|++++++.|+... ...+ +..+..|+++.+++
T Consensus 159 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 159 LAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 4444554 78999999999999999999998542 2222 23445688877765
No 462
>PRK08267 short chain dehydrogenase; Provisional
Probab=51.50 E-value=71 Score=28.09 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=26.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+.+|+..+|.-|.++|......|.+++++...
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 56888888999999999999999988777543
No 463
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=51.48 E-value=1.7e+02 Score=26.32 Aligned_cols=53 Identities=25% Similarity=0.361 Sum_probs=37.1
Q ss_pred cCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCE
Q 022547 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (295)
Q Consensus 149 ~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~ 204 (295)
...+.+++..+|...+|-.|.+++..++.+|.+++++... ..+.+.++.+|++
T Consensus 161 ~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~---~~~~~~~~~~~~~ 213 (342)
T cd08266 161 RARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGS---EDKLERAKELGAD 213 (342)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCC
Confidence 4556667777777777789999999999999996655432 2444555555654
No 464
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=51.26 E-value=1.5e+02 Score=27.97 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=7.2
Q ss_pred CCCEEEEcCCchHHH
Q 022547 261 CVDIFVAAIGTGGTI 275 (295)
Q Consensus 261 ~~d~vv~pvGtGgt~ 275 (295)
.+|. |+++|||+.+
T Consensus 77 ~~d~-IIaiGGGs~i 90 (337)
T cd08177 77 GADG-IVAIGGGSTI 90 (337)
T ss_pred CCCE-EEEeCCcHHH
Confidence 3444 4556665544
No 465
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=51.25 E-value=2e+02 Score=27.48 Aligned_cols=14 Identities=29% Similarity=0.435 Sum_probs=10.3
Q ss_pred CCCEEEEcCCchHHH
Q 022547 261 CVDIFVAAIGTGGTI 275 (295)
Q Consensus 261 ~~d~vv~pvGtGgt~ 275 (295)
++| +|+++|||+.+
T Consensus 83 ~~D-~IIaiGGGs~i 96 (376)
T cd08193 83 GAD-GVIGFGGGSSM 96 (376)
T ss_pred CCC-EEEEeCCchHH
Confidence 566 66788888865
No 466
>PRK12831 putative oxidoreductase; Provisional
Probab=51.13 E-value=53 Score=32.48 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=38.6
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCC---CC--HHHHHHHHhCCCEEEEe
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TN--LERRILLRAFGAEIILT 208 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~---~~--~~~~~~l~~~GA~Vv~v 208 (295)
.|+..++||.|.-+|..+.++|.+++++.... ++ ...++.++..|.+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 47889999999999999999999988887632 22 23445566788887643
No 467
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=50.86 E-value=67 Score=30.17 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEE--eCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH--HhCCCEEEEeCC
Q 022547 137 RIGYSMITDAEESGDITPGKTVLVE--PTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL--RAFGAEIILTDP 210 (295)
Q Consensus 137 R~a~~~l~~a~~~g~~~~g~~~vv~--aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l--~~~GA~Vv~v~~ 210 (295)
+.+...|..|.++|+ +..|+. .--.+.|+.+|......|++++++....+... .... -..||+-+.-++
T Consensus 131 ~tv~~~l~~A~~~~k----~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~-m~~vd~VivGAd~v~~nG 203 (310)
T PRK08535 131 SAALSVIKTAHEQGK----DIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYF-MKDVDKVVVGADAITANG 203 (310)
T ss_pred HHHHHHHHHHHHCCC----eEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHH-HHhCCEEEECccEEecCC
Confidence 667777777877765 222333 33368889999999999999998866543221 1112 124666665554
No 468
>PRK04148 hypothetical protein; Provisional
Probab=50.78 E-value=79 Score=26.11 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=37.1
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC
Q 022547 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (295)
Q Consensus 158 ~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~ 210 (295)
.+++-+.| .|.++|...+..|.+++.+ +.++..++.++..|.+++..+-
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dDl 67 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDDL 67 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECcC
Confidence 47778888 8888888888899887765 4566678888888888776553
No 469
>PRK05826 pyruvate kinase; Provisional
Probab=50.73 E-value=2.1e+02 Score=28.67 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=67.6
Q ss_pred HHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHhCCCEEEEeCCCC----ChHHHHHHHHHHHHcCCCeEEe-
Q 022547 171 IAFVAAVKGYKLIVT-----------MPASTNLERRILLRAFGAEIILTDPEK----GLRGALDKAEEIVLNTPNAYMF- 234 (295)
Q Consensus 171 lA~aa~~~Gi~~~iv-----------vp~~~~~~~~~~l~~~GA~Vv~v~~~~----~~~~a~~~a~~~a~~~~~~~~~- 234 (295)
+...|+..|.++++- .|......-+...-..|++-+...++. +-.++++...+++.+-...++.
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 455688899987763 333333344555566799977766531 2255665544443322111111
Q ss_pred ---cCCCCh-HHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEe
Q 022547 235 ---QQFDNM-ANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARIL 294 (295)
Q Consensus 235 ---~~~~n~-~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV 294 (295)
...... ..........+.++.++++ ..+.||+..-+|.++..++++ .|.+.|+++
T Consensus 344 ~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~isk~----RP~~pI~~~ 402 (465)
T PRK05826 344 LSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLISRF----RPGAPIFAV 402 (465)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHHhh----CCCCCEEEE
Confidence 000000 0111244555667777762 167899999999988877664 588888876
No 470
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=50.71 E-value=1.1e+02 Score=29.36 Aligned_cols=54 Identities=26% Similarity=0.397 Sum_probs=41.0
Q ss_pred CCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 151 ~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
..++|+..||..++|--|.++.-.|+..|+ +.++.- .+.+++++++.+||+-++
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~--~s~e~~~l~k~lGAd~vv 207 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTA--CSKEKLELVKKLGADEVV 207 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEE--cccchHHHHHHcCCcEee
Confidence 567777889999998888888888999993 222222 355889999999997655
No 471
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.52 E-value=89 Score=29.12 Aligned_cols=55 Identities=29% Similarity=0.448 Sum_probs=41.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHH-HHHHhCC-CE-EEEeCC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR-ILLRAFG-AE-IILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~-~~l~~~G-A~-Vv~v~~ 210 (295)
+..+||..|.--|.++|+.-...|.+.++++...-..+++ +.++..| .+ |+....
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~ 70 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQL 70 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeC
Confidence 3667887777799999999999999999999876555665 6666554 34 555544
No 472
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.50 E-value=1.7e+02 Score=25.31 Aligned_cols=40 Identities=8% Similarity=-0.045 Sum_probs=27.7
Q ss_pred HHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcC-----CCCEEEEeC
Q 022547 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN-----KEIKARILL 295 (295)
Q Consensus 253 EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~-----~~vkVigV~ 295 (295)
++++. .+.+|.||+. ++..+.|+..++++.+ .++.|+++|
T Consensus 167 ~~l~~-~~~~~~i~~~--~~~~a~~~~~~l~~~~~~~~p~di~i~~~d 211 (266)
T cd06278 167 RLLAS-RPRPDAIFCA--NDLLAIGVMDAARQEGGLRVPEDVSVIGFD 211 (266)
T ss_pred HHHhc-CCCCCEEEEc--CcHHHHHHHHHHHHhcCCCCccceEEEEeC
Confidence 44443 2468888876 4566778999998742 358899886
No 473
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=50.49 E-value=53 Score=35.82 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE-eCCCCChHHHHHHHHHHHHcCCCeE
Q 022547 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL-TDPEKGLRGALDKAEEIVLNTPNAY 232 (295)
Q Consensus 154 ~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~-v~~~~~~~~a~~~a~~~a~~~~~~~ 232 (295)
+....|+..++|-.|.+.|...++.|++++||=... ..|.-+.. ++.-.--.+.++.-.+..++.+..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~----------~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f 373 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH----------DLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRF 373 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC----------CCCceEEccCCCCcChHHHHHHHHHHHHhhcCeE
Q ss_pred EecCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCch
Q 022547 233 MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272 (295)
Q Consensus 233 ~~~~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtG 272 (295)
.. +...|......++.++ .+|+||+++|++
T Consensus 374 ~~-------n~~vG~dit~~~l~~~---~yDAV~LAtGA~ 403 (944)
T PRK12779 374 VK-------NFVVGKTATLEDLKAA---GFWKIFVGTGAG 403 (944)
T ss_pred EE-------eEEeccEEeHHHhccc---cCCEEEEeCCCC
No 474
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=50.20 E-value=76 Score=29.29 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=25.4
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcC-CeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKG-YKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~G-i~~~ivvp~ 188 (295)
+..||+.+++--|.++|......| .+++++...
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 366788877788888888888889 887777553
No 475
>PRK06482 short chain dehydrogenase; Provisional
Probab=50.20 E-value=95 Score=27.60 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=34.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hCCCEEEEeC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILTD 209 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~-~~GA~Vv~v~ 209 (295)
..+|+.++|.-|.++|......|.+++++... ..+++.++ ..+.++..+.
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~ 54 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR---PDALDDLKARYGDRLWVLQ 54 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhccCceEEEE
Confidence 56899999999999999988899998877654 23344333 2344554443
No 476
>PRK14031 glutamate dehydrogenase; Provisional
Probab=50.18 E-value=54 Score=32.57 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 135 KDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 135 K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
--||..+.+..+.+..-+.....+|+.-+.||-|..+|.....+|.+++++-+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 207 TGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 35788888887765443344446688899999999999999999999998776
No 477
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=50.14 E-value=1.7e+02 Score=27.73 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=13.2
Q ss_pred HHHHhhC-CCCCEEEEcCCchHHH
Q 022547 253 EIWEDTL-GCVDIFVAAIGTGGTI 275 (295)
Q Consensus 253 EI~~Ql~-~~~d~vv~pvGtGgt~ 275 (295)
|+.+++. .++|. |+++|||+.+
T Consensus 71 ~~~~~~~~~~~d~-IiaiGGGs~~ 93 (370)
T cd08551 71 AAVAAYREEGCDG-VIAVGGGSVL 93 (370)
T ss_pred HHHHHHHhcCCCE-EEEeCCchHH
Confidence 4444442 25665 6778888765
No 478
>PRK09414 glutamate dehydrogenase; Provisional
Probab=50.10 E-value=58 Score=32.39 Aligned_cols=52 Identities=12% Similarity=-0.043 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 136 DRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 136 ~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
-||..+.+..+.+..........|+..+.||-|..+|.....+|.+++.+..
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4788888887766544443446688899999999999999999999887744
No 479
>PRK13243 glyoxylate reductase; Reviewed
Probab=50.02 E-value=2.3e+02 Score=26.81 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=64.1
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (295)
.+|..-+-|+-|..+|..++.+|++++++-+.. ... ....+|++. . ++++. .++. +.+.+.-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~---~---~l~el-------l~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY---R---PLEEL-------LRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe---c---CHHHH-------HhhC-CEEEEeC
Confidence 457778889999999999999999987665432 221 123345421 1 23332 2232 4444443
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHH--HHHHHHHHh
Q 022547 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI--TGTGRFLKM 284 (295)
Q Consensus 237 ~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~--aGi~~~lk~ 284 (295)
..++. -..-+..|.++.+ +++.+++-+|.|+.+ ..+..++++
T Consensus 213 P~t~~----T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 213 PLTKE----TYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred CCChH----HhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 33332 2233556778877 578999999999987 556666654
No 480
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=49.97 E-value=65 Score=30.49 Aligned_cols=8 Identities=25% Similarity=0.704 Sum_probs=3.7
Q ss_pred EEcCCchH
Q 022547 266 VAAIGTGG 273 (295)
Q Consensus 266 v~pvGtGg 273 (295)
|+++|||+
T Consensus 81 IIavGGGs 88 (349)
T cd08550 81 IIGVGGGK 88 (349)
T ss_pred EEEecCcH
Confidence 44455444
No 481
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=49.95 E-value=97 Score=25.13 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHH
Q 022547 168 GLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (295)
Q Consensus 168 g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~ 222 (295)
|+.+|-.....|++++|+ ...-+.-...++..|-+|+..++ .+.+++++...
T Consensus 54 G~~~a~~l~~~gvdvvi~--~~iG~~a~~~l~~~GIkv~~~~~-~~V~e~i~~~~ 105 (121)
T COG1433 54 GIRIAELLVDEGVDVVIA--SNIGPNAYNALKAAGIKVYVAPG-GTVEEAIKAFL 105 (121)
T ss_pred hHHHHHHHHHcCCCEEEE--CccCHHHHHHHHHcCcEEEecCC-CCHHHHHHHHh
Confidence 455667777777776664 33555667788888888888877 46677665543
No 482
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=49.89 E-value=2e+02 Score=28.35 Aligned_cols=43 Identities=5% Similarity=-0.017 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCCCEEEEcCCc-hHHHHHHHHHHHhcCCCCEEEEe
Q 022547 251 GPEIWEDTLGCVDIFVAAIGT-GGTITGTGRFLKMMNKEIKARIL 294 (295)
Q Consensus 251 ~~EI~~Ql~~~~d~vv~pvGt-Ggt~aGi~~~lk~~~~~vkVigV 294 (295)
..||.+++ +.|-.+|+...+ +.++..+..+++...++++|.||
T Consensus 102 ~adlAk~l-~~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~Gv 145 (449)
T TIGR00379 102 TASVAKAL-DAPIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGV 145 (449)
T ss_pred HHHHHHHh-CCCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 44888887 345566666665 56677777777666667887776
No 483
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=49.68 E-value=27 Score=28.70 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=26.2
Q ss_pred EEEeCCCccHHHHHHHHHHcCCeEEEEECCC
Q 022547 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (295)
Q Consensus 159 vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~ 189 (295)
|+..++|.-+.+++..++.+|++++++-|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4678999999999999999999999998763
No 484
>PRK06849 hypothetical protein; Provisional
Probab=49.64 E-value=1.4e+02 Score=28.45 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=25.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
++++|+.++.+.|..+|...+..|++++++-..
T Consensus 5 ~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 5 KTVLITGARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 366777777777899999999999988877544
No 485
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.60 E-value=1.7e+02 Score=25.90 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=46.4
Q ss_pred eEEEEECCC----CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHHHHH
Q 022547 181 KLIVTMPAS----TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (295)
Q Consensus 181 ~~~ivvp~~----~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~EI~~ 256 (295)
|.+++.-.+ +-....+.+...|++|+++.... +..+...++.++.+...++ +.| ..+.. ....+..++.+
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~---~~~~~~~~~~~~~~~~~~~-~~D-~~~~~-~v~~~~~~~~~ 84 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND---KARPYVEPLAEELDAPIFL-PLD-VREPG-QLEAVFARIAE 84 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh---hhHHHHHHHHHhhccceEE-ecC-cCCHH-HHHHHHHHHHH
Confidence 455555533 44555667777899999987642 2222233333332222222 221 12222 34555666777
Q ss_pred hhCCCCCEEEEcCCch
Q 022547 257 DTLGCVDIFVAAIGTG 272 (295)
Q Consensus 257 Ql~~~~d~vv~pvGtG 272 (295)
++ +.+|++|..+|..
T Consensus 85 ~~-g~ld~lv~nAg~~ 99 (258)
T PRK07533 85 EW-GRLDFLLHSIAFA 99 (258)
T ss_pred Hc-CCCCEEEEcCccC
Confidence 76 5799999998853
No 486
>PLN02686 cinnamoyl-CoA reductase
Probab=49.59 E-value=70 Score=30.37 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=29.0
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECC
Q 022547 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (295)
Q Consensus 155 g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~ 188 (295)
+++++|+..+|-.|..++......|.++++++..
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578899999999999999999999998877664
No 487
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=49.54 E-value=93 Score=26.28 Aligned_cols=55 Identities=31% Similarity=0.423 Sum_probs=31.9
Q ss_pred CeEEEEeCCCccH---HHHHHHHHHcCCeEEEEE--CC-CCCH---HHHHHHHhCCCEEEEeCC
Q 022547 156 KTVLVEPTTGNTG---LGIAFVAAVKGYKLIVTM--PA-STNL---ERRILLRAFGAEIILTDP 210 (295)
Q Consensus 156 ~~~vv~aSsGN~g---~AlA~aa~~~Gi~~~ivv--p~-~~~~---~~~~~l~~~GA~Vv~v~~ 210 (295)
...+|-++.||.| .++|......|++++++. +. ..++ ...+.++.+|.+++....
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 89 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDS 89 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCC
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccc
Confidence 3667778888654 344555556799998844 32 3333 345566778877765543
No 488
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.53 E-value=1.8e+02 Score=25.33 Aligned_cols=34 Identities=6% Similarity=-0.103 Sum_probs=26.3
Q ss_pred CCCCEEEEcCCchHHHHHHHHHHHhcC----CCCEEEEeC
Q 022547 260 GCVDIFVAAIGTGGTITGTGRFLKMMN----KEIKARILL 295 (295)
Q Consensus 260 ~~~d~vv~pvGtGgt~aGi~~~lk~~~----~~vkVigV~ 295 (295)
..+|.||++ +...+.|+..++++.+ .++.|+++|
T Consensus 177 ~~~~ai~~~--~d~~a~~~~~~l~~~g~~~p~~i~v~~~d 214 (270)
T cd06296 177 ERPTAIFAG--NDLMALGVYEAARERGLRIPEDLSVVGFD 214 (270)
T ss_pred CCCcEEEEc--CcHHHHHHHHHHHHhCCCCCCceEEEEEC
Confidence 467888866 5566789999998876 368899886
No 489
>PRK15452 putative protease; Provisional
Probab=49.49 E-value=2.7e+02 Score=27.63 Aligned_cols=101 Identities=13% Similarity=0.035 Sum_probs=53.9
Q ss_pred EEEECCCCCHHHHHHHHhCCCEEEEeCCCC--------Ch-HHHHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHH
Q 022547 183 IVTMPASTNLERRILLRAFGAEIILTDPEK--------GL-RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (295)
Q Consensus 183 ~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~--------~~-~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy~t~~~E 253 (295)
.+.+|.. +.++++..-..||+-+.++... .+ .+-+.++.+++.+.+..+|+.-..-+.+ +......+
T Consensus 5 eLlapag-~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e---~el~~~~~ 80 (443)
T PRK15452 5 ELLSPAG-TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHN---AKLKTFIR 80 (443)
T ss_pred EEEEECC-CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCH---HHHHHHHH
Confidence 4566654 3355555556788888775531 01 1335555556655544455421111111 11222233
Q ss_pred HHHhhC-CCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEE
Q 022547 254 IWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARI 293 (295)
Q Consensus 254 I~~Ql~-~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVig 293 (295)
.++++. -.+|.|++.- .|+...+++..|+.+|++
T Consensus 81 ~l~~l~~~gvDgvIV~d------~G~l~~~ke~~p~l~ih~ 115 (443)
T PRK15452 81 DLEPVIAMKPDALIMSD------PGLIMMVREHFPEMPIHL 115 (443)
T ss_pred HHHHHHhCCCCEEEEcC------HHHHHHHHHhCCCCeEEE
Confidence 344442 2589988862 466777888888888875
No 490
>PRK07074 short chain dehydrogenase; Provisional
Probab=49.49 E-value=1.2e+02 Score=26.43 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=26.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 156 ~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
++.+|+..+|.-|.++|......|.+++++..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888899999999998889998877654
No 491
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=49.40 E-value=82 Score=32.56 Aligned_cols=53 Identities=25% Similarity=0.264 Sum_probs=40.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCC---------C---------HHHHHHHHhCCCEEEEeC
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---------N---------LERRILLRAFGAEIILTD 209 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~---------~---------~~~~~~l~~~GA~Vv~v~ 209 (295)
..|+..++|-.|.+.|+.+++.|++++||-.... + ...++.++.+|.+++.-.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 4578899999999999999999999988854321 1 124667788999887543
No 492
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=49.28 E-value=76 Score=29.70 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH--HhCCCEEEEeCC
Q 022547 137 RIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL--RAFGAEIILTDP 210 (295)
Q Consensus 137 R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l--~~~GA~Vv~v~~ 210 (295)
+.+...+..|.++|+-- ...+++.--.+.|+.+|......|++++++....+. ...... -..||+-+.-++
T Consensus 126 ~tv~~~l~~a~~~~~~f--~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~-~~m~~vd~VivGad~v~~nG 198 (301)
T TIGR00511 126 EAALSVIKTAFEQGKDI--EVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVR-YFMKEVDHVVVGADAITANG 198 (301)
T ss_pred HHHHHHHHHHHHcCCcE--EEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHH-HHHHhCCEEEECccEEecCC
Confidence 56667777777776511 122333333788999999999999999987554322 211211 124666655544
No 493
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=49.10 E-value=1.2e+02 Score=23.31 Aligned_cols=94 Identities=18% Similarity=0.071 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEEeCC--CCChHHHHHHHHHHHHcCCCeEEecCCCChHHHHHHH
Q 022547 170 GIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP--EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHF 247 (295)
Q Consensus 170 AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~--~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~Gy 247 (295)
.+|.+.+..|+++.++=.......-.+.++.+..+++.+.. ..++....+.+....+..++...+-+....
T Consensus 19 ~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~------- 91 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA------- 91 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS-------
T ss_pred HHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch-------
Confidence 45566667799988763333234556778888999887754 223556666666655555554444322111
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCc
Q 022547 248 DSTGPEIWEDTLGCVDIFVAAIGT 271 (295)
Q Consensus 248 ~t~~~EI~~Ql~~~~d~vv~pvGt 271 (295)
.....|+++.. ..+|++|..=|-
T Consensus 92 t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 92 TADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp GHHHHHHHHHH-HTSEEEEEETTS
T ss_pred hcChHHHhccC-cCcceecCCChH
Confidence 11122344431 357888876653
No 494
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=49.09 E-value=2.2e+02 Score=26.43 Aligned_cols=9 Identities=56% Similarity=0.855 Sum_probs=4.0
Q ss_pred EEcCCchHH
Q 022547 266 VAAIGTGGT 274 (295)
Q Consensus 266 v~pvGtGgt 274 (295)
|+++|||+.
T Consensus 82 IIaiGGGs~ 90 (332)
T cd07766 82 VIAVGGGST 90 (332)
T ss_pred EEEeCCchH
Confidence 344554443
No 495
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=49.07 E-value=61 Score=30.38 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEEeCC-CccHHHHHHHHHHcCCeEEEEECCCCC--HHHH----HHHHhCCCEEEEeC
Q 022547 148 ESGDITPGKTVLVEPTT-GNTGLGIAFVAAVKGYKLIVTMPASTN--LERR----ILLRAFGAEIILTD 209 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSs-GN~g~AlA~aa~~~Gi~~~ivvp~~~~--~~~~----~~l~~~GA~Vv~v~ 209 (295)
..|.+. |.+ |+-.+. -|.+++++.+++.+|++++++.|+... ...+ +..+..|+++..++
T Consensus 141 ~~g~l~-g~k-va~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 141 QFGDVS-KVK-LAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred HhCCcC-CcE-EEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 345543 223 333344 477899999999999999999998642 2222 23455788887766
No 496
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=48.71 E-value=1.6e+02 Score=25.59 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCeEEEEECC-CCCHHHHHHHHh---CCCEEEEeCCC
Q 022547 169 LGIAFVAAVKGYKLIVTMPA-STNLERRILLRA---FGAEIILTDPE 211 (295)
Q Consensus 169 ~AlA~aa~~~Gi~~~ivvp~-~~~~~~~~~l~~---~GA~Vv~v~~~ 211 (295)
-++|.+.+.+|+++.. +|+ ....+-+..+.. .|-+|.+..+.
T Consensus 89 ~~Ta~~l~~~G~~~~~-~~~~~~~~~l~~~l~~~~~~~~~ili~~~~ 134 (249)
T PRK05928 89 EKTALALKKLGGKVVF-VPEDGESSELLLELPELLLKGKRVLYLRGN 134 (249)
T ss_pred HHHHHHHHHcCCCccc-cCCCCcChHHHHhChhhhcCCCEEEEECCC
Confidence 4666667777877654 343 333344433332 36666666553
No 497
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=48.70 E-value=2.7e+02 Score=27.21 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=61.9
Q ss_pred eEEEEeCCCccHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHcCCCeEEe
Q 022547 157 TVLVEPTTGNTGLGIAFVAAVK--GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMF 234 (295)
Q Consensus 157 ~~vv~aSsGN~g~AlA~aa~~~--Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~v~~~~~~~~a~~~a~~~a~~~~~~~~~ 234 (295)
+..|-.++|+-|.+..-+.+.+ .++++.+.-..-...-.++.+.++.+.+.+..+ +......+.....+-.++.
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~----~~~~~l~~~l~~~~~~v~~ 78 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE----EAAKELKEALAAAGIEVLA 78 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHhhccCCceEEE
Confidence 4466777899999887777665 567666664443444566778899998888652 1111111111110001111
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHh
Q 022547 235 QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKM 284 (295)
Q Consensus 235 ~~~~n~~~~~~Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~ 284 (295)
|.. -..|+.+. ..+|+||.+++|...+.-+..+++.
T Consensus 79 -----------G~~-~~~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~a 114 (385)
T PRK05447 79 -----------GEE-GLCELAAL--PEADVVVAAIVGAAGLLPTLAAIRA 114 (385)
T ss_pred -----------Chh-HHHHHhcC--CCCCEEEEeCcCcccHHHHHHHHHC
Confidence 211 12244443 4689999998876444556666653
No 498
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=48.68 E-value=1.7e+02 Score=26.28 Aligned_cols=57 Identities=21% Similarity=0.426 Sum_probs=37.0
Q ss_pred HcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhCCCEEEE
Q 022547 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (295)
Q Consensus 148 ~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp~~~~~~~~~~l~~~GA~Vv~ 207 (295)
+.+.+.+++..+|...+|..|.+++..|+.+ ..++++... .+.+.+.++.+|++.++
T Consensus 132 ~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~--~~~~~~~~~-~~~~~~~~~~~g~~~~~ 188 (337)
T cd08275 132 ELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV--PNVTVVGTA-SASKHEALKENGVTHVI 188 (337)
T ss_pred HhhCCCCCCEEEEEcCcchHHHHHHHHHHHc--cCcEEEEeC-CHHHHHHHHHcCCcEEe
Confidence 3455677777777766789999999999988 223333322 34566666777775443
No 499
>PLN02477 glutamate dehydrogenase
Probab=48.66 E-value=1e+02 Score=30.28 Aligned_cols=52 Identities=17% Similarity=0.020 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccHHHHHHHHHHcCCeEEEEEC
Q 022547 136 DRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (295)
Q Consensus 136 ~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~AlA~aa~~~Gi~~~ivvp 187 (295)
-||..+.+..+.+..-.......|+.-+.||-|..+|......|.+++.+..
T Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD 237 (410)
T PLN02477 186 GRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD 237 (410)
T ss_pred hHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 4788888887765422233335578888999999999999999999885544
No 500
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=48.60 E-value=37 Score=29.24 Aligned_cols=43 Identities=19% Similarity=0.109 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCchHHHHHHHHHHHhcCCCCEEEEe
Q 022547 246 HFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARIL 294 (295)
Q Consensus 246 Gy~t~~~EI~~Ql~~~~d~vv~pvGtGgt~aGi~~~lk~~~~~vkVigV 294 (295)
+....+.++.+| +-.||.||.=.|=|.+ .++|+..|++++|+.
T Consensus 52 av~~a~~~L~~~-Gf~PDvI~~H~GWGe~-----Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 52 AVARAARQLRAQ-GFVPDVIIAHPGWGET-----LFLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHHHHHc-CCCCCEEEEcCCcchh-----hhHHHhCCCCcEEEE
Confidence 344555566555 5589999998887774 589999999999975
Done!