RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022547
(295 letters)
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 384 bits (987), Expect = e-133
Identities = 152/276 (55%), Positives = 194/276 (70%), Gaps = 8/276 (2%)
Query: 16 LLPPHPLNIASQKRHRFARFKTSSLSSINGALATRRRILPIVASAKAGAAASSSSSSLYA 75
LL P + +S RF S S + A + S G+ S
Sbjct: 43 LLNPLTSSSSSSTLRRFRCSPEISSLSFSSASDFSLAMKRQSRSFADGSERDPSVVCEAV 102
Query: 76 TSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVK 135
+ G+NIA++V+QLIG+TPMVYLN + +GCV N+AAKLE MEPC SVK
Sbjct: 103 KRETGPD--------GLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVK 154
Query: 136 DRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR 195
DRIGYSM+TDAE+ G I+PGK+VLVEPT+GNTG+G+AF+AA +GY+LI+TMPAS ++ERR
Sbjct: 155 DRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERR 214
Query: 196 ILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255
+LL+AFGAE++LTDP KG+ GA+ KAEEI+ NTP+AYM QQFDN AN KIH+++TGPEIW
Sbjct: 215 VLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIW 274
Query: 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKA 291
+DT G VDIFVA IGTGGTITG GRF+K N + +
Sbjct: 275 DDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQV 310
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 372 bits (957), Expect = e-130
Identities = 133/199 (66%), Positives = 164/199 (82%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SVKDRIG+SMI+DAE+ G I
Sbjct: 4 RIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLI 63
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP K
Sbjct: 64 KPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAK 123
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+ IGTG
Sbjct: 124 GMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTG 183
Query: 273 GTITGTGRFLKMMNKEIKA 291
GTITG G++LK N +K
Sbjct: 184 GTITGAGKYLKEQNANVKL 202
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 367 bits (945), Expect = e-128
Identities = 95/199 (47%), Positives = 134/199 (67%), Gaps = 1/199 (0%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
N+A+ + QLIG+TP +YLNK+ V K+E P SVKDR+G+++ AE+ G +
Sbjct: 10 NVAQSIDQLIGQTPALYLNKLN-NTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKL 68
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PGK+++VE ++GNTG+ +A + A++GYK+I+TMP S +LERR LLR FGAE+ILT
Sbjct: 69 IPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 128
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G++GA+ A++IV PNA + QF N IH ++TGPEIWE T VD F+A +GTG
Sbjct: 129 GMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 188
Query: 273 GTITGTGRFLKMMNKEIKA 291
GT+TG R LK M +
Sbjct: 189 GTLTGVARALKKMGSHARI 207
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 364 bits (938), Expect = e-127
Identities = 101/202 (50%), Positives = 140/202 (69%), Gaps = 1/202 (0%)
Query: 90 HGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEES 149
++IAED+TQLIGRTP+V L +VT+G V ++ AKLE P SVKDRIG +M+ AE++
Sbjct: 2 SHMSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQA 61
Query: 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
G I P T+++EPT+GNTG+ +A V A +GY+ ++TMP + +LERR+LLRA+GAE+ILT
Sbjct: 62 GLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTP 120
Query: 210 PEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAI 269
G+ GA+ KAEE+ ++ QQF+N AN IH +T E+W DT G VDI VA +
Sbjct: 121 GADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGV 180
Query: 270 GTGGTITGTGRFLKMMNKEIKA 291
GTGGTITG + +K +
Sbjct: 181 GTGGTITGVAQVIKERKPSARF 202
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 346 bits (891), Expect = e-120
Identities = 96/201 (47%), Positives = 136/201 (67%), Gaps = 5/201 (2%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
I D + IG TP+V L G GNV K+E P SVK RIG +M+ AE+ G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
T GK +V+ T+GNTG+ +A+VAA +GYK+ +TMP + +LER+ LL G ++LT+ K
Sbjct: 60 TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 213 GLRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGT 271
G++GA+ KAEEIV + P+ Y M +QF+N AN +IH ++TGPEIW+DT G VD+ VA +GT
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 272 GGTITGTGRFLKM-MNKEIKA 291
GG+ITG R +K+ K+I +
Sbjct: 179 GGSITGISRAIKLDFGKQITS 199
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 339 bits (873), Expect = e-118
Identities = 94/195 (48%), Positives = 131/195 (67%), Gaps = 2/195 (1%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK- 156
V IG+TP+V L KV E + V KLE + P S+KDR + MI DAEE G + PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG 216
V+VEPT+GNTG+G+A +AA +GY+LI+TMPA + ER+ +L+AFGAE++LTDPE+ +
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 217 ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276
A ++A + A+M QF N AN++ H+++TGPE++E G +D FV GTGGTIT
Sbjct: 123 AREEALRLK-EELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 277 GTGRFLKMMNKEIKA 291
G GR+LK +K
Sbjct: 182 GVGRYLKERIPHVKV 196
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 334 bits (860), Expect = e-116
Identities = 100/199 (50%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
+T+LIG TP V LN++ + +V KLE M P SVKDRI +MI AE++G +
Sbjct: 3 RTVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKL 62
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PG T +VEPT+GNTG+G+A VAA KGYK ++ MP + +LERR LLRA+GAE++LT +
Sbjct: 63 KPGDT-IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQ 121
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G+RGA+ KAEE+V +M QQF N AN +IH +TG EI E +D FVA +GTG
Sbjct: 122 GMRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTG 180
Query: 273 GTITGTGRFLKMMNKEIKA 291
GTITG G+ L+ IK
Sbjct: 181 GTITGAGKVLREAYPNIKI 199
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 330 bits (848), Expect = e-113
Identities = 80/204 (39%), Positives = 124/204 (60%), Gaps = 7/204 (3%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCV----GNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
I ++ + IG TP+V L+ VTE + KLE P SVKDR+G++++ A +
Sbjct: 12 RIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIK 71
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G + PG ++E T+GNTG+ + AV GY++ + MP++ ++ER+++++AFGAE+ILT
Sbjct: 72 DGRLKPGME-IIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILT 130
Query: 209 DPEKGLRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
+ +KG+ GA+++ +++ P Y + QF N N H T EIWEDT G VDI V+
Sbjct: 131 EGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVVS 189
Query: 268 AIGTGGTITGTGRFLKMMNKEIKA 291
A+GT GT+ G LK K IK
Sbjct: 190 AVGTSGTVIGVAEKLKEKKKGIKI 213
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 317 bits (815), Expect = e-109
Identities = 83/194 (42%), Positives = 120/194 (61%), Gaps = 2/194 (1%)
Query: 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK 156
+ Q IG TP+V L ++ V KLE P SVKDR SMI +AE+ G+I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
Query: 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG 216
L+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ G
Sbjct: 63 V-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 217 ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276
A D A E+ + QF+N N H+ +TGPEIW+ T G + FV+++GT GTIT
Sbjct: 122 ARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 277 GTGRFLKMMNKEIK 290
G RF++ +K +
Sbjct: 181 GVSRFMREQSKPVT 194
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 317 bits (815), Expect = e-109
Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 9/200 (4%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
+ + +LIG TP+V L+ + + KLE P SVKDR MI DAE+ G +
Sbjct: 9 HHHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLL 64
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
G +VEPT+GN G+ IA + A +G+++I+TMP + ++ERR +L+ GAE++LT E
Sbjct: 65 KNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGEL 121
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G++GA++KA EI A+M QF+N N+ H +TGPEI + +D FVA +GTG
Sbjct: 122 GMKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTG 180
Query: 273 GTITGTGRFLK-MMNKEIKA 291
GTI+G GR LK +K
Sbjct: 181 GTISGVGRVLKGFFGNGVKI 200
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 314 bits (806), Expect = e-107
Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 9/206 (4%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVT-------EGCVGNVAAKLESMEPCRSVKDRIGYSMIT 144
+ + + Q +G TP+V L +++ +G + AKLE P S+KDR MI
Sbjct: 3 MTRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIE 62
Query: 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204
AE G + PG T ++EPT+GNTG+ +A A +KGY+LI MP +T++ERR LL +GA+
Sbjct: 63 QAEADGLLRPGAT-ILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQ 121
Query: 205 IILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI 264
II + E G A+ A+E+ P+ M Q+ N AN H+ TGPE+ D +
Sbjct: 122 IIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITH 180
Query: 265 FVAAIGTGGTITGTGRFLKMMNKEIK 290
FVA +GT GT+ GTGRFL+ +K
Sbjct: 181 FVAGLGTTGTLMGTGRFLREHVANVK 206
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 291 bits (748), Expect = 3e-97
Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 6/203 (2%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
I D+ + IG TPMV +NK+ + G + AK E SVKDRI MI DAE G
Sbjct: 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 156
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD- 209
+ PG T ++EPT+GNTG+G+A AAV+GY+ I+ MP + E+ +LRA GAEI+ T
Sbjct: 157 TLKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215
Query: 210 --PEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
+ A + PN+++ Q+ N +N H+D+T EI + G +D+ VA
Sbjct: 216 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 275
Query: 268 AIGTGGTITGTGRFLKMMNKEIK 290
++GTGGTITG R LK +
Sbjct: 276 SVGTGGTITGIARKLKEKCPGCR 298
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 293 bits (752), Expect = 1e-96
Identities = 82/203 (40%), Positives = 116/203 (57%), Gaps = 6/203 (2%)
Query: 93 NIAEDVTQLIGRTPMVYLNKV--TEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
I ++ ++IG TP+V LN + ++G + AK E + P SVKDRIGY M+ DAEE G
Sbjct: 49 QITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQG 108
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
+ PG T ++EPT+GNTG+G+A AVKGYK I+ MP + E+ LR GA+II T
Sbjct: 109 LLKPGYT-IIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167
Query: 211 EKGL---RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
E G + A+++ TPN+ + Q+ N N H+D T EI VD+ V
Sbjct: 168 EAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVV 227
Query: 268 AIGTGGTITGTGRFLKMMNKEIK 290
+ GT GTI+G GR +K +
Sbjct: 228 SAGTAGTISGIGRKIKEQVPSCQ 250
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 287 bits (737), Expect = 4e-96
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 9/203 (4%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC-RSVKDRIGYSMITDAEESGD 151
D + TP+V V V KLE P SVKDR +I+
Sbjct: 85 PSPLDFFERGKPTPLVRSRLQLPNGV-RVWLKLEWYNPFSLSVKDRPAVEIISRLSR--R 141
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
+ G + + T+ N G+ ++ VA + GY+ V +P + ++L R GA++I+
Sbjct: 142 VEKGSL-VADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEA 200
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGC---VDIFVAA 268
L + + QF N AN + H T EI+ + + +
Sbjct: 201 PSTVHLLPRVMKDS-KNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGS 259
Query: 269 IGTGGTITGTGRFLKMMNKEIKA 291
+GT G ++ +L+ ++ I+A
Sbjct: 260 LGTSGHMSAAAFYLQSVDPSIRA 282
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 66.5 bits (163), Expect = 1e-12
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 15/189 (7%)
Query: 103 GRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
G TP++ + + G G + K E + P S KDR I+ A E+G K ++
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAG-----KRAVI 83
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALD 219
+TGNT A AA G + V +P + + +GA+++ G D
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ------GTFD 137
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDST-GPEIWEDTLGCVDIFVAAIGTGGTITGT 278
A IV + + +++ +I T EI + D +G G IT
Sbjct: 138 DALNIVRKIGENFPVEIVNSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAY 197
Query: 279 GRFLKMMNK 287
+ K+ +
Sbjct: 198 WKGFKIYYE 206
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 65.8 bits (161), Expect = 2e-12
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 18/190 (9%)
Query: 103 GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEP 162
G TP++ +++ + K+E + P S KDR +TDA G+ ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAH-----GQRAVLCA 91
Query: 163 TTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRG-ALDK 220
+TGNT A AA G V +P + + GA+II D G L+
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID---GNFDDCLEL 148
Query: 221 AEEIVLNTPNAYMFQQFDNMANL---KIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITG 277
A ++ + P N + K + EI + D+ +G G IT
Sbjct: 149 ARKMAADFPTIS-LVNSVNPVRIEGQK----TAAFEIVDVLGTAPDVHALPVGNAGNITA 203
Query: 278 TGRFLKMMNK 287
+ ++
Sbjct: 204 YWKGYTEYHQ 213
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 65.2 bits (159), Expect = 4e-12
Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 27/188 (14%)
Query: 103 GRTPMVYLNKVTEGCVG--NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
G + + + + + +G ++ K + S KD +++ + +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAFGAEIILTDPEKGLR-GAL 218
+TG+T ++ A G IV +PA+ +++ A GA ++ D G +
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSID---TDFDGCM 245
Query: 219 DKAEEIV-------LNTPNAYMFQ-QFDNMANLKIHFDSTGPEIWEDTLGCV-DIFVAAI 269
EI N+ N+ + Q K + EI + V D +
Sbjct: 246 KLIREITAELPIYLANSLNSLRLEGQ-------K----TAAIEILQQFDWQVPDWVIVPG 294
Query: 270 GTGGTITG 277
G G I
Sbjct: 295 GNLGNIYA 302
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 62.7 bits (153), Expect = 2e-11
Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 41/218 (18%)
Query: 90 HGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDR-IGYSMITDAEE 148
G L +TP+ +++ +V K++S +P S K R IG+ A++
Sbjct: 32 RGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ 91
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G V + GN G+ A+ A G + +P +T L+ GA +
Sbjct: 92 ------GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVV 145
Query: 209 DPEKGLRG-----ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPE 253
G A + A+ + N P +++ I FD S E
Sbjct: 146 -------GELLDEAFELAKALAKNNPG-WVY----------IPPFDDPLIWEGHASIVKE 187
Query: 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK-EIK 290
+ E ++G GG + G + L+ ++
Sbjct: 188 LKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVP 225
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 60.3 bits (147), Expect = 1e-10
Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 42/207 (20%)
Query: 101 LIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDR-IGYSMITDAEESGDITPGKTVL 159
TP++ +++ V K E+++P S K R IG+ A++ G L
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKK------GCRHL 57
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG--- 216
V + GN G+ A+ A G + +P ST+L+ L+ GAE+ LT G
Sbjct: 58 VCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLT-------GKVW 110
Query: 217 --ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLG-CVD 263
A +A+E+ + FD S E+
Sbjct: 111 DEANLRAQELAKRDGWEN------------VPPFDHPLIWKGHASLVQELKAVLRTPPGA 158
Query: 264 IFVAAIGTGGTITGTGRFLKMMNKEIK 290
+ +A G G L++ + +
Sbjct: 159 LVLAVGGGGLLAGVVAGLLEVGWQHVP 185
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 60.0 bits (146), Expect = 2e-10
Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 31/197 (15%)
Query: 103 GRTPMVYLN--KVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
G TP++ L + + AK E + P S KDR ++ A E G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGG-----AQAVA 81
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRG-AL 218
+TGNT A AA G IV +PA L + GA I+ + G AL
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE---GNFDDAL 138
Query: 219 DKAEEIV-------LNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCV-DIFVAAIG 270
+++ +N+ N + + +A F E+ ++ LG +G
Sbjct: 139 RLTQKLTEAFPVALVNSVNPHRLEGQKTLA-----F-----EVVDE-LGDAPHYHALPVG 187
Query: 271 TGGTITGTGRFLKMMNK 287
G IT K +
Sbjct: 188 NAGNITAHWMGYKAYHA 204
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 54.8 bits (132), Expect = 1e-08
Identities = 38/218 (17%), Positives = 67/218 (30%), Gaps = 34/218 (15%)
Query: 104 RTPMVYLNKVTEGC-VGNVAAKLESM--------------EPCRSVKDRIGYSM-ITDAE 147
TP+ L+ + V + K ES + + ++ + E
Sbjct: 44 PTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFE 103
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
+ K T GN G G+A+ A G ++ MP + ER + GAE I+
Sbjct: 104 HLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIV 163
Query: 208 TDP--EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFD------STGPEIWEDT- 258
TD + +R + A++ + Q KI + E E
Sbjct: 164 TDMNYDDTVRLTMQHAQQ-----HGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMR 218
Query: 259 ---LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKARI 293
+ + + A G G +L +
Sbjct: 219 EMGVTPTHVLLQAGV-GAMAGGVLGYLVDVYSPQNLHS 255
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 51.7 bits (125), Expect = 7e-08
Identities = 37/210 (17%), Positives = 79/210 (37%), Gaps = 37/210 (17%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESG 150
+E + + +TP++ + V + V V K E+ + + K R + + +A+ ++G
Sbjct: 17 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAG 76
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
+T ++GN IA A + G + MP + + +G ++I+ D
Sbjct: 77 VLTF--------SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR 128
Query: 211 EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLG 260
A+EI I +D + E++E+ +G
Sbjct: 129 --YKDDREKMAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEE-VG 173
Query: 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIK 290
+D +G GG ++G+ + +
Sbjct: 174 PLDALFVCLGGGGLLSGSALAARHFAPNCE 203
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 51.7 bits (124), Expect = 1e-07
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 120 NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKG 179
V A E + + + E ++ V +TGN GL I ++A G
Sbjct: 125 EVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAV-GSTGNLGLSIGIMSARIG 183
Query: 180 YKLIVTMPASTNLERRILLRAFGAEIILTDP--EKGLRGALDKAEEIVLNTPNAYMFQQF 237
+K+ V M A ++ LR+ G ++ + + A+ PN +
Sbjct: 184 FKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQS----DPNCFFIDDE 239
Query: 238 D 238
+
Sbjct: 240 N 240
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 51.0 bits (123), Expect = 2e-07
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 37/210 (17%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESG 150
+ + I +T M N +E C G + K E+M+ S K R ++ + T+AE G
Sbjct: 31 KKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKG 90
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
+ + GN G++ A+ G V MP + + AE++L
Sbjct: 91 VVAC--------SAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHG- 141
Query: 211 EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLG 260
+ K EIV +F I +D + G EI ED L
Sbjct: 142 -DNFNDTIAKVSEIVETE--GRIF----------IPPYDDPKVIAGQGTIGLEIMED-LY 187
Query: 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIK 290
VD + IG GG I G +K +N IK
Sbjct: 188 DVDNVIVPIGGGGLIAGIAIAIKSINPTIK 217
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 50.6 bits (122), Expect = 2e-07
Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 26/206 (12%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154
++ I TP++ + + + N+ K E + S K R + +
Sbjct: 16 HINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERK 75
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGL 214
K V V ++GN G + + A ++G + +P + +++ ++A+GA I+ +P
Sbjct: 76 PKAV-VTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--SD 132
Query: 215 RGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLGCVDI 264
+ A+ + T + +H + E+ + VD
Sbjct: 133 ESRENVAKRVTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQ-VPLVDA 179
Query: 265 FVAAIGTGGTITGTGRFLKMMNKEIK 290
V +G GG + G +K + +K
Sbjct: 180 LVVPVGGGGMLAGIAITVKALKPSVK 205
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 49.1 bits (118), Expect = 6e-07
Identities = 46/212 (21%), Positives = 73/212 (34%), Gaps = 47/212 (22%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESGDIT 153
V + +P+ K+++ N K E + S K R Y+M+ + E + G IT
Sbjct: 54 VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT 113
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
+ GN G+A + MP +T + +RA G +++L
Sbjct: 114 A--------SAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLY----- 160
Query: 214 LRG-----ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDT 258
G A A E+ + D + I FD + G EI
Sbjct: 161 --GKTFDEAQTHALEL----------SEKDGLKY--IPPFDDPGVIKGQGTIGTEINRQ- 205
Query: 259 LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIK 290
L + +G GG I G F K + K
Sbjct: 206 LKDIHAVFIPVGGGGLIAGVATFFKQIAPNTK 237
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 48.4 bits (116), Expect = 1e-06
Identities = 49/212 (23%), Positives = 80/212 (37%), Gaps = 47/212 (22%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESGDIT 153
V + TP+ + K++ + K E +P S K R Y+M+ T+ + G IT
Sbjct: 25 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT 84
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
+ GN G+AF +A G K ++ MP +T + +R FG E++L
Sbjct: 85 A--------SAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLH----- 131
Query: 214 LRG-----ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDT 258
G A KA E+ Q + FD + E+ +
Sbjct: 132 --GANFDEAKAKAIEL----------SQQQGFTW--VPPFDHPMVIAGQGTLALELLQQ- 176
Query: 259 LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIK 290
+D +G GG G +K + +IK
Sbjct: 177 DAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIK 208
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 45.9 bits (110), Expect = 6e-06
Identities = 42/210 (20%), Positives = 72/210 (34%), Gaps = 36/210 (17%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE-ESGDIT 153
+ RTP++ + + K E ++ S K R S E G +
Sbjct: 11 FRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENPKGLLA 70
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
++GN G+A+ A V G K +V MP + ++ RA+GAE++
Sbjct: 71 V--------SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--T 120
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDT---LG 260
+ + A + T Y IH FD + G E+
Sbjct: 121 AKNREEVARALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQAGRMGV 168
Query: 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIK 290
+A +G GG + G +K ++
Sbjct: 169 FPGAVLAPVGGGGLLAGLATAVKALSPTTL 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 40/146 (27%)
Query: 2 ALSSLQLQL-QLQLQLLPPHPLNI-ASQKRHRFARFKTSSLSSINGALATRRRILPIVAS 59
+ L L L+ LL P ASQ + +F + ILP
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK------------------ILPEPTE 46
Query: 60 AKAGAAASSSSSSLYAT----STREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTE 115
A ++ + L + +E + F V YL
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV--LNLCLTEFENC---YLE---- 97
Query: 116 GCVGN----VAAKLESMEPCRSVKDR 137
GN +AAKL VK +
Sbjct: 98 ---GNDIHALAAKLLQENDTTLVKTK 120
Score = 38.9 bits (90), Expect = 0.002
Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 78/209 (37%)
Query: 2 ALSSLQLQLQLQLQLLPPHPLNIA----SQKR----HRF----ARFKTSSLSSINGALAT 49
+L L L L+ + P L+ + S+++ +RF + F + L A+
Sbjct: 385 SLYGLNLTLR---KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP-----AS 436
Query: 50 RRRILPIVASAKAGAAASSSSSSL----YATSTREIEKEEGNDF--HGVNIAEDVTQLIG 103
++ S ++ + Y T G+D +I+E + I
Sbjct: 437 -----DLINKDLVKNNVSFNAKDIQIPVYDTFD-------GSDLRVLSGSISERIVDCII 484
Query: 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT----VL 159
R P V T + + I D G PG VL
Sbjct: 485 RLP-VKWETTT----------------------QFKATHILDF---G---PGGASGLGVL 515
Query: 160 VEPTTGNTGLGIAFVAAVK-------GYK 181
TG+ + + G+K
Sbjct: 516 THRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 37.7 bits (87), Expect = 0.004
Identities = 45/263 (17%), Positives = 72/263 (27%), Gaps = 67/263 (25%)
Query: 12 LQLQLLPPHPLNIASQKRHRFARFKTSSLSSINGALATRRRILPIVASAKAGAAASSSSS 71
L +LL + + K + + I + +R SA A ++
Sbjct: 104 LAAKLLQENDTTLV--KTKELIK------NYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 72 -------------------SLYATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNK 112
LY T + D + + + + RT +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVG-----DL--IKFSAETLSELIRTTLDAEKV 208
Query: 113 VTEGCVGNVAAKLE--SMEPCRSVKDRIGYSM-----------ITDAEESGDITPGKTVL 159
T+G N+ LE S P + I S + A+ G TPG+ L
Sbjct: 209 FTQGL--NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGE--L 263
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-----NLERRILLRAF--GAEIILTDPEK 212
G TG V AV + R+ + F G P
Sbjct: 264 RSYLKGATGHSQGLVTAV------AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 213 GLR-GALDKAEEIVLNTPNAYMF 234
L L+ + E P + M
Sbjct: 318 SLPPSILEDSLENNEGVP-SPML 339
Score = 29.2 bits (65), Expect = 1.8
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 20/96 (20%)
Query: 194 RRILLRA-------FG---AEIILTDP-EKGLRGALDKAEEIVLNTPNAYMFQQFDNMAN 242
+ + RA +G +I++ +P + +K + I N Y F+ + +
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN----YSAMIFETIVD 1698
Query: 243 LKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGT 278
K+ + EI E + F G ++ T
Sbjct: 1699 GKLKTEKIFKEINEHSTSY--TFR---SEKGLLSAT 1729
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 34.0 bits (78), Expect = 0.053
Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 13/157 (8%)
Query: 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV--AAVKGYKLIVTMPASTNLERRIL 197
Y M+ + + G VL+ +G GLG + G + ++ ++
Sbjct: 207 YRMLVS-DRGAQMKQGDIVLIWGASG--GLGSYAIQFVKNGGGIPVAV---VSSAQKEAA 260
Query: 198 LRAFGAEIILTDPEKGLRGAL-DKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256
+RA G ++++ E G+ + D +V I F+ TG +
Sbjct: 261 VRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFG 320
Query: 257 DTLGCVD----IFVAAIGTGGTITGTGRFLKMMNKEI 289
++ + +G T R+L M K+I
Sbjct: 321 LSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKI 357
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 33.0 bits (76), Expect = 0.11
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFV--AAVKGYKLIVTMPASTNLERRILLRAFGAEI 205
+ K ++ T G + L + A +G++ IVT + E+ LL+ GA
Sbjct: 158 DIVKQEGEKAFVM--TAGASQLCKLIIGLAKEEGFRPIVT--VRRD-EQIALLKDIGAAH 212
Query: 206 ILTDPEKGLRGAL 218
+L + L
Sbjct: 213 VLNEKAPDFEATL 225
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 32.2 bits (74), Expect = 0.20
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV--AAVKGYKLIVTMPASTN---LER 194
Y M+ D + PG +V+ N+G+G A + AA G + I +
Sbjct: 156 YRMLMD---FEQLQPGDSVIQ--NASNSGVGQAVIQIAAALGLRTINV--VRDRPDIQKL 208
Query: 195 RILLRAFGAEIILTDPEKGLRGALDKA 221
L++ GAE ++T+ E +
Sbjct: 209 SDRLKSLGAEHVITEEELRRPEMKNFF 235
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 32.1 bits (73), Expect = 0.24
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 13/157 (8%)
Query: 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV--AAVKGYKLIVTMPASTNLERRIL 197
Y + + G VL+ +G GLG A G I ++ ++ +
Sbjct: 215 YRQLVS-RNGAGMKQGDNVLIWGASG--GLGSYATQFALAGGANPICV---VSSPQKAEI 268
Query: 198 LRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEIWE 256
RA GAE I+ +G R D+ + ++ ++ I F+ G E +
Sbjct: 269 CRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFG 328
Query: 257 DTLGCVDIF--VAAIG--TGGTITGTGRFLKMMNKEI 289
++ + +G R+L M K I
Sbjct: 329 ASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRI 365
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 30.9 bits (70), Expect = 0.47
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKL--IVTMPASTNLERRILLRAFGAEII---L 207
KT+ V TG G + VAA G+ + V E L + L
Sbjct: 3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEE--LQAIPNVTLFQGPL 60
Query: 208 TDPEKGLRGALDKAEEIVLNTP 229
+ + + A +NT
Sbjct: 61 LNNVPLMDTLFEGAHLAFINTT 82
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 30.7 bits (70), Expect = 0.56
Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 54/161 (33%)
Query: 150 GDITPGKTVLVEPTTGNTGLG-IAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
+ G TVLV G G I V+ + +A+GA ++ T
Sbjct: 164 AGVQLGTTVLV------IGAGPIGLVSV-------------------LAAKAYGAFVVCT 198
Query: 209 DPEKGLRGALDKAEE------IVLNTPNAYMFQQFDNMANLK-----IHFDSTGPEIWED 257
L+ A+ +V++ + + + + D +G E
Sbjct: 199 ARSP---RRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEK--- 252
Query: 258 TLGCVDIFVAAIGTGGTIT--GTGR------FLKMMNKEIK 290
C+ I + TGGT+ G G + +EI
Sbjct: 253 ---CITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREID 290
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 30.7 bits (69), Expect = 0.62
Identities = 20/142 (14%), Positives = 35/142 (24%), Gaps = 27/142 (19%)
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE-II 206
E+ + ++ N G + + G KL+ E+ LL+A GA +
Sbjct: 165 ETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNI--VRKQ-EQADLLKAQGAVHVC 221
Query: 207 LTDPE---KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVD 263
+ L AL + FD+TG +
Sbjct: 222 NAASPTFMQDLTEALVSTGATIA--------------------FDATGGGKLGGQILTCM 261
Query: 264 IFVAAIGTGGTITGTGRFLKMM 285
K +
Sbjct: 262 EAALNKSAREYSRYGSTTHKQV 283
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 30.7 bits (70), Expect = 0.62
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 47/161 (29%)
Query: 146 AEESGDITPGKTVLVEPTTGNTGLG-IAFVAAVKGYKLIVTMPASTNLERRILLRAFGA- 203
+ + G VL+ G G I + + +A GA
Sbjct: 171 GLQRAGVRLGDPVLI------CGAGPIGLITM-------------------LCAKAAGAC 205
Query: 204 EIILTDPEKGLRGALDKAEEI----VLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTL 259
+++TD ++ G L A+EI V + + ++ + F P + +
Sbjct: 206 PLVITDIDE---GRLKFAKEICPEVVTHKVERLSAE--ESAKKIVESFGGIEPAVALECT 260
Query: 260 G---CVDIFVAAIGTGGTIT--GTGR------FLKMMNKEI 289
G + + A+ GG + G G+ F++ +E+
Sbjct: 261 GVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREV 301
>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI
protein structure initiative, northeast structural
genomics consortium, NESG; HET: C2E; 1.92A {Vibrio
cholerae} SCOP: b.45.2.1 b.45.2.2 PDB: 1yln_A* 3kyg_A*
Length = 251
Score = 30.1 bits (67), Expect = 0.69
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK----LIVTMPASTNLERRI 196
S I + + + + TT G G L+V MP + + +
Sbjct: 24 STINSTDALAMVEHSSELTLSITTP-VGTKFVCRTPFIGTHTDKFLLVEMPKISADDLQY 82
Query: 197 LLRAFGAEIIL 207
+ G + +
Sbjct: 83 FFQE-GFWMNI 92
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 30.0 bits (68), Expect = 0.75
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 29/88 (32%)
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT--DP 210
+ LV T GN G+G+A V R L R F +++LT D
Sbjct: 2 SGIHVALV--TGGNKGIGLAIV--------------------RDLCRLFSGDVVLTARDV 39
Query: 211 EKGLRGALDKAEEIVLNTPNAYMFQQFD 238
+G + A +++ + F Q D
Sbjct: 40 TRG-QAA---VQQLQAEGLSPR-FHQLD 62
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 30.1 bits (68), Expect = 0.93
Identities = 23/141 (16%), Positives = 38/141 (26%), Gaps = 45/141 (31%)
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE-II 206
+ VLV G +G+ F R +G E +
Sbjct: 174 CDDGTLNCRKVLV---VGTGPIGVLFTLL---------------------FRTYGLEVWM 209
Query: 207 LTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFV 266
E EE N N S G + +D++G D+ +
Sbjct: 210 ANRREP-TEVEQTVIEETKTNYYN-----------------SSNGYDKLKDSVGKFDVII 251
Query: 267 AAIGTGGTITGTGRFLKMMNK 287
A G I G + ++ +
Sbjct: 252 DATGADVNILGNV--IPLLGR 270
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 1.7
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 25/83 (30%)
Query: 196 ILLRAFGAEIILTDPEKGLRGALDKAE-EIVLNTPNA-----YMF-----------QQF- 237
+ AF D + + L K E + ++ + +A +F Q+F
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 238 -----DNMANL--KIHFDSTGPE 253
N L I + P
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPS 106
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 28.7 bits (65), Expect = 2.4
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 23/121 (19%)
Query: 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206
++ +I P + L G GL A G KLI T T ++ GA +
Sbjct: 133 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGT--VGTA-QKAQSALKAGAWQV 189
Query: 207 LTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH--FDSTGPEIWEDTLGCVDI 264
+ E+ L ++ +EI T K+ +DS G + WE +L C+
Sbjct: 190 INYREEDLV---ERLKEI---TGGK------------KVRVVYDSVGRDTWERSLDCLQR 231
Query: 265 F 265
Sbjct: 232 R 232
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 28.8 bits (65), Expect = 2.7
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 26/79 (32%)
Query: 140 YSMITDAE--------ESGDITPGKTVLVEPTTGNTGLGI---AFVAAVKGYKLIVTMPA 188
M+TD E ESG GKTV NT I A +AA+ P
Sbjct: 163 QYMLTDRENQSILITGESGA---GKTV-------NTKRVIQYFAVIAAIGDRSKKDQSPG 212
Query: 189 STNLERRIL-----LRAFG 202
LE +I+ L AFG
Sbjct: 213 KGTLEDQIIQANPALEAFG 231
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 28.3 bits (64), Expect = 3.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 150 GDITPGKTVLVEPTTGNTGLGIAFV--AAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
G + G+TVLV G G+G A + A G K+I + +++ GA+I+L
Sbjct: 155 GQLRAGETVLVLGAAG--GIGTAAIQIAKGMGAKVIAV--VNRT-AATEFVKSVGADIVL 209
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 28.1 bits (63), Expect = 3.4
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 36/153 (23%)
Query: 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGY---KLIVTMPASTNLERRILLRAFGAEII 206
G I PG V++ G +G+A VA +K K+I++ P + RR L + GA+ +
Sbjct: 209 GGIRPGDNVVI---LGGGPIGLAAVAILKHAGASKVILSEP---SEVRRNLAKELGADHV 262
Query: 207 LTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTG-PEIWEDTLGCVDIF 265
+ DP K + E VL+ N + + ++TG P++ + V
Sbjct: 263 I-DPTK------ENFVEAVLDYTNGLGAK---------LFLEATGVPQLVWPQIEEV--I 304
Query: 266 VAAIGTGGTITGTGR--------FLKMMNKEIK 290
A G T+ R + +
Sbjct: 305 WRARGINATVAIVARADAKIPLTGEVFQVRRAQ 337
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH
domain, DNA-binding domain, DNA binding protein; NMR
{Escherichia coli} SCOP: a.60.2.3
Length = 78
Score = 26.0 bits (58), Expect = 4.0
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 10/35 (28%)
Query: 30 HRFA----------RFKTSSLSSINGALATRRRIL 54
H TSSL +I G RR++L
Sbjct: 6 HHHHHSSGLVPRGSHMNTSSLETIEGVGPKRRQML 40
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 28.0 bits (63), Expect = 4.5
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 15/73 (20%)
Query: 146 AEESGDITPGKTVLVEPTTGNTGLG-----IAFVAAVKGYKLIVTMPASTNLERRILLRA 200
S + PG V + G G A A + G ++ N ER LL
Sbjct: 177 GCVSAGVKPGSHVYI------AGAGPVGRCAAAGARLLGAACVIVG--DQNPERLKLLSD 228
Query: 201 FGAEIILTDPEKG 213
G E I D
Sbjct: 229 AGFETI--DLRNS 239
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Length = 444
Score = 27.9 bits (61), Expect = 4.7
Identities = 32/160 (20%), Positives = 48/160 (30%), Gaps = 22/160 (13%)
Query: 131 CRSVKDRIGYSMITDAEESGDITPGKTVL-------VEPTTGNT--GLGIAFVAAVKGYK 181
+ Y++I AE G + VL + TG G G+A V A
Sbjct: 227 SERRGETTSYNVI--AEVKGSTKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAA---- 280
Query: 182 LIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMA 241
+ ER I + + AE E GL G A+E Y+ + D A
Sbjct: 281 AKHILDLPQKPERTIRVVLYAAE------ELGLLGGKTYAKEHEAELEKHYIAAESDFGA 334
Query: 242 NLKIHFDSTGPEIWEDTLGCVDIFVAAIG-TGGTITGTGR 280
D + + +G G +G
Sbjct: 335 GPIYQIDWRVADTAHSPVINAMKVAEPLGVAAGNNKASGG 374
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2,
phospholipid biosynthesis structural genomics, protein
structure initiative; 1.40A {Escherichia coli} SCOP:
d.13.1.4
Length = 227
Score = 27.3 bits (60), Expect = 5.1
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 113 VTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGL 169
V E C+ N PC VK GY ++ D P + +L+ PT G
Sbjct: 14 VLEECLPNQQQNQNPS-PCAEVKPNAGYVVLKDLNG-----PLQYLLM-PTYRINGT 63
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 27.2 bits (61), Expect = 6.4
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205
+ + PG TV V G GL A A + G +++ N R +A G EI
Sbjct: 177 GAVTAGVGPGSTVYVA-GAGPVGLAAAASARLLGAAVVIVG--DLNPARLAHAKAQGFEI 233
Query: 206 ILTDPEKG 213
D
Sbjct: 234 A--DLSLD 239
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A
{Escherichia coli} PDB: 2ho0_A 1f39_A
Length = 133
Score = 26.6 bits (59), Expect = 6.8
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 139 GYSMITDAEESGDITPGKTVLVEPT 163
G SM T G +LV+P
Sbjct: 51 GNSMTTPTGSKTSFPDGMLILVDPE 75
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5'
exoribonuclease, hydrolase; 2.65A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 240
Score = 26.8 bits (60), Expect = 7.6
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 256 EDTLGCVDIFVAAIGTGGTIT---GTGRF 281
ED G D+ VA + IT G
Sbjct: 179 EDKEGQADVPVAILPRTREITLLQSDGNL 207
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 26.8 bits (59), Expect = 8.2
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER-----RILLRAFGAEIILTD 209
GK +V TG G+ A + A +G +++ L++ + + F + +
Sbjct: 119 GKKAVVLAGTGPVGMRSAALLAGEGAEVV---LCGRKLDKAQAAADSVNKRFKVNVTAAE 175
Query: 210 P--EKGLRGALDKAEEIVLNTPNA 231
+ A+ A V
Sbjct: 176 TADDASRAEAVKGA-HFVFTAGAI 198
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 26.0 bits (58), Expect = 8.3
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 181 KLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGA 217
+ + MP + + R L + A DP K A
Sbjct: 73 VIKIVMPTKPDEKARELWQQLAAAEASFDPRKTWGKA 109
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 26.7 bits (60), Expect = 8.9
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 33/89 (37%)
Query: 155 GKTVLV---EPTTGN--TGLGI----------------AFVAAVKGYKLIVTMPASTNLE 193
GK VL+ +P GN +GLG+ V V G+ L+ PA+ +L
Sbjct: 35 GKRVLLVDLDPQ-GNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLL---PATPDLV 90
Query: 194 RRILLRAFGAEIILTDPEKGLRGALDKAE 222
GA + L LR AL
Sbjct: 91 --------GATVELAGAPTALREALRDEG 111
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 26.8 bits (60), Expect = 9.0
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 23/119 (19%)
Query: 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205
++ + PG+ +L G G A G KLI T S+ E+ +A GA
Sbjct: 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGT--VSSP-EKAAHAKALGAWE 188
Query: 206 ILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH--FDSTGPEIWEDTLGCV 262
+ + + + E+ T K +D G + W +L V
Sbjct: 189 TIDYSHEDVA---KRVLEL---TDGK------------KCPVVYDGVGQDTWLTSLDSV 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.371
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,445,053
Number of extensions: 276274
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 726
Number of HSP's successfully gapped: 91
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)