BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022548
MESNPPQPPASSPPPKPWERAGAASGPTPFKPPSAGNTSDVVESSGTANPGEIVSASDRT
ATVNRNAVGRPLPSRPWEQNYGSTSYGGTNNYGGYGSTMNYNSSLGSGMYGSYGGGTYGG
GLYGGGMYGNSMYRGGYGGLYGSSGMYGGGMYNSGFGGPMGGYGMGMGGPYGGAQDPNDP
YGAPSSPPGFWISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGEL
ARFVLRLLGIKTKPKKVNGPNGPPLPGPNNMHGNQNFLEGPKAAPGEAWDNVWGN

High Scoring Gene Products

Symbol, full name Information P value
PEX13
AT3G07560 		protein from Arabidopsis thaliana 7.8e-58

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022548
        (295 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079621 - symbol:PEX13 "AT3G07560" species:370...   427  7.8e-58   2


>TAIR|locus:2079621 [details] [associations]
            symbol:PEX13 "AT3G07560" species:3702 "Arabidopsis
            thaliana" [GO:0005515 "protein binding" evidence=IPI] [GO:0005778
            "peroxisomal membrane" evidence=IDA] [GO:0016558 "protein import
            into peroxisome matrix" evidence=RCA;IDA;IMP] [GO:0006635 "fatty
            acid beta-oxidation" evidence=RCA;IMP] [GO:0006605 "protein
            targeting" evidence=RCA] [GO:0006869 "lipid transport"
            evidence=RCA] [GO:0006891 "intra-Golgi vesicle-mediated transport"
            evidence=RCA] [GO:0010351 "lithium ion transport" evidence=RCA]
            [GO:0044265 "cellular macromolecule catabolic process"
            evidence=RCA] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005778
            GO:GO:0006635 GO:GO:0016558 EMBL:AC009853 UniGene:At.28242
            TCDB:3.A.20.1.2 EMBL:AY075689 EMBL:AY093745 EMBL:AK318837
            IPI:IPI00527738 IPI:IPI00973657 RefSeq:NP_187412.1 IntAct:Q9SRR0
            STRING:Q9SRR0 EnsemblPlants:AT3G07560.1 GeneID:819945
            KEGG:ath:AT3G07560 TAIR:At3g07560 eggNOG:NOG264813
            HOGENOM:HOG000240473 InParanoid:Q9SRR0 KO:K13344 OMA:WDNVWGN
            PhylomeDB:Q9SRR0 ProtClustDB:CLSN2684846 Genevestigator:Q9SRR0
            Uniprot:Q9SRR0
        Length = 304

 Score = 427 (155.4 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 83/127 (65%), Positives = 97/127 (76%)

Query:   174 AQDPNDPYGAPSSPPGFWISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRS 233
             +QDPNDP+  P SPPGFWIS LRVMQG VNFFGR+++LIDQNTQAFH+FM+ALLQLFDR 
Sbjct:   178 SQDPNDPFNQPPSPPGFWISFLRVMQGAVNFFGRVAMLIDQNTQAFHMFMSALLQLFDRG 237

Query:   234 GMLYGELARFVLRLLGIKTKPKKVXX--XXXXXXXXXXXXXXXQNFLEGPK-AAPGEA-- 288
             GMLYGELARFVLR+LG++T+P+K+                   QN+LEGPK AAPG    
Sbjct:   238 GMLYGELARFVLRMLGVRTRPRKMQQPPQGPNGLPLPHQPHGNQNYLEGPKTAAPGGGGG 297

Query:   289 WDNVWGN 295
             WDNVWGN
Sbjct:   298 WDNVWGN 304

 Score = 185 (70.2 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 35/64 (54%), Positives = 46/64 (71%)

Query:    18 WERAGAASGPTPFKPPSAGNTSDVVESSGTANPGEIVSAS-DRTATV-NRNAVGRPLPSR 75
             WE+ G  SGP PF+PPS  +T+  VE+SGTANPGE+V    +R  T  N N++ RP+P+R
Sbjct:    14 WEKEGNTSGPNPFRPPSNTSTAGSVEASGTANPGEVVPPPVNRPNTAANMNSLSRPVPAR 73

Query:    76 PWEQ 79
             PWEQ
Sbjct:    74 PWEQ 77


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      295       169   0.00082  108 3  11 22  0.43    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  152 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.46u 0.16s 15.62t   Elapsed:  00:00:01
  Total cpu time:  15.46u 0.16s 15.62t   Elapsed:  00:00:01
  Start:  Fri May 10 05:18:40 2013   End:  Fri May 10 05:18:41 2013

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