BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022548
         (295 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SRR0|PEX13_ARATH Peroxisomal membrane protein 13 OS=Arabidopsis thaliana GN=PEX13
           PE=1 SV=1
          Length = 304

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/129 (72%), Positives = 108/129 (83%), Gaps = 9/129 (6%)

Query: 174 AQDPNDPYGAPSSPPGFWISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRS 233
           +QDPNDP+  P SPPGFWIS LRVMQG VNFFGR+++LIDQNTQAFH+FM+ALLQLFDR 
Sbjct: 178 SQDPNDPFNQPPSPPGFWISFLRVMQGAVNFFGRVAMLIDQNTQAFHMFMSALLQLFDRG 237

Query: 234 GMLYGELARFVLRLLGIKTKPKKV----NGPNGPPLPGPNNMHGNQNFLEGPK-AAP--G 286
           GMLYGELARFVLR+LG++T+P+K+     GPNG  LP P+  HGNQN+LEGPK AAP  G
Sbjct: 238 GMLYGELARFVLRMLGVRTRPRKMQQPPQGPNG--LPLPHQPHGNQNYLEGPKTAAPGGG 295

Query: 287 EAWDNVWGN 295
             WDNVWGN
Sbjct: 296 GGWDNVWGN 304


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.138    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,370,392
Number of Sequences: 539616
Number of extensions: 8415656
Number of successful extensions: 77009
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 1181
Number of HSP's that attempted gapping in prelim test: 35576
Number of HSP's gapped (non-prelim): 15471
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)