Query 022548
Match_columns 295
No_of_seqs 141 out of 163
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3875 Peroxisomal biogenesis 99.9 2.8E-24 6.1E-29 203.8 15.6 80 175-260 101-192 (362)
2 PF04088 Peroxin-13_N: Peroxin 99.9 7.2E-25 1.6E-29 189.9 9.5 65 192-256 25-98 (158)
3 KOG3875 Peroxisomal biogenesis 97.5 0.0041 8.9E-08 60.8 15.4 47 194-252 146-192 (362)
4 KOG0921 Dosage compensation co 95.3 0.05 1.1E-06 59.6 7.4 8 104-111 1202-1209(1282)
5 PF04088 Peroxin-13_N: Peroxin 87.1 1.7 3.7E-05 38.5 6.0 9 183-191 21-29 (158)
6 COG4371 Predicted membrane pro 78.3 5.7 0.00012 38.8 6.1 13 195-207 113-125 (334)
7 PRK15048 methyl-accepting chem 75.7 34 0.00075 34.0 11.0 74 197-277 467-541 (553)
8 PF04626 DEC-1_C: Dec-1 protei 69.3 3.7 8.1E-05 35.7 2.3 11 73-83 69-79 (132)
9 COG4371 Predicted membrane pro 68.2 6 0.00013 38.6 3.7 9 41-49 18-26 (334)
10 PF11127 DUF2892: Protein of u 51.2 83 0.0018 23.1 6.5 56 192-256 9-66 (66)
11 PF04531 Phage_holin_1: Bacter 49.6 65 0.0014 25.6 6.0 21 187-207 10-30 (84)
12 PRK15041 methyl-accepting chem 47.8 77 0.0017 32.1 7.7 48 196-243 468-515 (554)
13 KOG0037 Ca2+-binding protein, 45.8 76 0.0016 30.1 6.8 22 222-243 95-126 (221)
14 PRK10265 chaperone-modulator p 44.0 90 0.0019 25.3 6.2 45 201-249 52-96 (101)
15 PRK11085 magnesium/nickel/coba 44.0 1.1E+02 0.0024 29.6 7.9 52 192-243 131-188 (316)
16 PRK13922 rod shape-determining 40.3 2.5E+02 0.0054 25.8 9.2 45 197-241 42-86 (276)
17 cd00179 SynN Syntaxin N-termin 38.9 1.9E+02 0.004 23.7 7.4 46 193-239 3-52 (151)
18 PF12921 ATP13: Mitochondrial 34.3 65 0.0014 27.1 4.1 33 195-239 52-84 (126)
19 PF00015 MCPsignal: Methyl-acc 33.7 1E+02 0.0022 26.0 5.3 14 198-211 137-150 (213)
20 PF05746 DALR_1: DALR anticodo 33.1 2E+02 0.0044 22.4 6.5 15 241-255 104-118 (119)
21 PF04297 UPF0122: Putative hel 32.9 1.3E+02 0.0029 25.1 5.6 42 204-245 35-76 (101)
22 PF01153 Glypican: Glypican; 32.9 2.1E+02 0.0047 29.9 8.4 35 198-232 77-112 (557)
23 PF06013 WXG100: Proteins of 1 32.5 1.8E+02 0.0039 20.5 8.0 31 196-226 7-37 (86)
24 PF06149 DUF969: Protein of un 32.3 1.7E+02 0.0036 27.8 6.8 34 199-234 40-73 (218)
25 PF02074 Peptidase_M32: Carbox 32.2 90 0.002 32.3 5.5 56 192-251 127-192 (494)
26 PF06861 BALF1: BALF1 protein; 31.6 2.2E+02 0.0047 26.4 7.2 55 192-246 87-146 (182)
27 cd07643 I-BAR_IMD_MIM Inverse 30.4 2.3E+02 0.005 27.1 7.4 52 192-243 39-90 (231)
28 PRK05287 hypothetical protein; 30.3 1.6E+02 0.0034 28.1 6.4 52 192-247 16-70 (250)
29 COG1459 PulF Type II secretory 30.2 46 0.001 33.3 3.0 59 191-249 93-154 (397)
30 PF08376 NIT: Nitrate and nitr 30.1 1.7E+02 0.0037 25.2 6.1 48 196-243 97-145 (247)
31 PRK11115 transcriptional regul 29.9 3.8E+02 0.0083 23.5 8.7 58 192-249 16-77 (236)
32 PF04626 DEC-1_C: Dec-1 protei 29.6 55 0.0012 28.7 2.9 22 66-88 67-88 (132)
33 PRK13875 conjugal transfer pro 29.6 1.2E+02 0.0026 31.4 5.8 18 232-249 49-66 (440)
34 PHA02970 hypothetical protein; 29.1 1.9E+02 0.004 25.0 5.9 17 240-256 93-109 (115)
35 PRK13841 conjugal transfer pro 27.4 2E+02 0.0044 29.4 6.8 53 197-249 29-91 (391)
36 PRK09793 methyl-accepting prot 27.3 2.5E+02 0.0055 28.1 7.6 46 198-243 466-511 (533)
37 PF08926 DUF1908: Domain of un 27.2 1.6E+02 0.0035 28.9 5.9 47 210-256 167-231 (282)
38 PF04380 BMFP: Membrane fusoge 26.2 3.2E+02 0.0068 21.4 6.4 56 192-247 9-66 (79)
39 cd07605 I-BAR_IMD Inverse (I)- 26.1 3.1E+02 0.0067 25.6 7.4 42 192-234 37-78 (223)
40 KOG2568 Predicted membrane pro 25.7 3.8E+02 0.0083 28.4 8.7 35 224-258 267-304 (518)
41 PF11887 DUF3407: Protein of u 25.5 3.7E+02 0.008 25.2 7.9 17 212-228 89-105 (267)
42 KOG1991 Nuclear transport rece 25.3 2.1E+02 0.0045 32.6 7.0 54 194-247 583-646 (1010)
43 COG5345 Uncharacterized protei 25.0 2.3E+02 0.005 28.5 6.6 21 180-200 192-212 (358)
44 COG2715 SpmA Uncharacterized m 24.9 4.4E+02 0.0096 24.8 8.0 24 206-229 21-44 (206)
45 KOG2662 Magnesium transporters 24.5 3.1E+02 0.0067 28.3 7.6 33 195-230 178-210 (414)
46 PF06350 HSL_N: Hormone-sensit 24.4 3.1E+02 0.0067 27.1 7.4 32 183-215 64-95 (313)
47 PF01601 Corona_S2: Coronaviru 24.4 1.8E+02 0.004 31.3 6.2 40 194-233 274-317 (610)
48 COG2317 Zn-dependent carboxype 24.1 1.8E+02 0.0039 30.6 6.0 58 196-257 130-197 (497)
49 TIGR01541 tape_meas_lam_C phag 24.1 6E+02 0.013 25.0 9.3 52 196-247 159-215 (332)
50 PF04652 DUF605: Vta1 like; I 23.7 1.4E+02 0.0031 28.4 4.9 54 195-248 13-84 (380)
51 PF02714 DUF221: Domain of unk 23.4 2.4E+02 0.0052 26.1 6.2 28 226-253 203-230 (325)
52 PF12825 DUF3818: Domain of un 23.0 3.4E+02 0.0074 26.8 7.4 19 236-254 322-340 (341)
53 COG0232 Dgt dGTP triphosphohyd 22.8 2.7E+02 0.0059 28.5 6.8 47 203-249 289-337 (412)
54 PF08484 Methyltransf_14: C-me 22.2 1.4E+02 0.0031 26.0 4.2 40 208-247 25-64 (160)
55 COG4174 ABC-type uncharacteriz 22.0 1.1E+02 0.0024 30.6 3.8 26 189-215 223-248 (364)
56 smart00748 HEPN Higher Eukaryt 21.7 2.3E+02 0.0049 22.3 4.9 42 212-254 42-86 (113)
57 PF02791 DDT: DDT domain; Int 21.4 1.8E+02 0.0038 21.4 4.0 49 199-249 8-56 (61)
58 PLN00090 photosystem II reacti 21.4 1.2E+02 0.0026 25.9 3.4 50 197-258 56-105 (113)
59 PF05133 Phage_prot_Gp6: Phage 21.3 3.4E+02 0.0073 25.4 6.7 64 187-250 292-365 (441)
60 PF01864 DUF46: Putative integ 21.2 2.4E+02 0.0052 25.5 5.5 27 225-251 88-115 (175)
61 PF11435 She2p: RNA binding pr 21.0 2.3E+02 0.0051 26.7 5.5 16 232-247 30-48 (204)
62 TIGR00802 nico high-affinity n 20.9 1.6E+02 0.0035 28.8 4.7 19 238-256 126-144 (280)
63 PF12295 Symplekin_C: Sympleki 20.7 1.3E+02 0.0029 26.8 3.8 31 220-250 110-140 (183)
64 PHA03325 nuclear-egress-membra 20.1 3.6E+02 0.0079 27.8 7.0 29 192-220 122-150 (418)
No 1
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.8e-24 Score=203.76 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=66.0
Q ss_pred CCCCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 022548 175 QDPNDPYG---APSSPPGFWISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARF-------- 243 (295)
Q Consensus 175 ~DPn~pfg---e~ts~p~fwqstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~Larf-------- 243 (295)
++|+++|+ |+++ +++||+|||||+||++|||||||||+|+|+||+|||+|+|||++||..|.+|
T Consensus 101 ~np~srf~~~aeess-----r~aFQsIESiV~Av~siA~MLeST~~A~~~SFravi~Vae~F~rLKs~l~s~f~~fAl~r 175 (362)
T KOG3875|consen 101 TNPESRFGLPAEESS-----RGAFQSIESIVGAVGSIAQMLESTFMAVHNSFRAVISVAENFGRLKSSLGSFFGIFALFR 175 (362)
T ss_pred cCcchhccccccccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788886 5555 7888999999999999999999999999999999999999999999886555
Q ss_pred -HHHHhccccCCCCCCCC
Q 022548 244 -VLRLLGIKTKPKKVNGP 260 (295)
Q Consensus 244 -vlrlLg~~tk~r~~~~~ 260 (295)
|| +|+++++.+.+..|
T Consensus 176 ~lk-~lyR~~l~~L~l~~ 192 (362)
T KOG3875|consen 176 RLK-ILYRLLLKMLKLSP 192 (362)
T ss_pred HHH-HHHHHHHHHhCCCc
Confidence 33 45566666666544
No 2
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=99.91 E-value=7.2e-25 Score=189.91 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhccccCCCC
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGE---------LARFVLRLLGIKTKPKK 256 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~---------LarfvlrlLg~~tk~r~ 256 (295)
|+|||+||+||+||++|||||||||+|+|+||+|||+|||||++||.+ |.||+|+|+.+.++.+.
T Consensus 25 r~tFq~IESIV~Afg~fAqMLESTy~AthsSF~a~v~VAeqF~~Lk~~lgs~l~ifal~R~lk~l~~kl~~~~~ 98 (158)
T PF04088_consen 25 RATFQSIESIVGAFGGFAQMLESTYMATHSSFFAMVSVAEQFGRLKNTLGSILGIFALFRWLKWLYRKLLGRLR 98 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999988 56778888876665554
No 3
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0041 Score=60.77 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 022548 194 ALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARFVLRLLGIKT 252 (295)
Q Consensus 194 tFq~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~LarfvlrlLg~~t 252 (295)
-|++|-+|++.|+++..+|.+- +.++|++ .+|| +|-|+|||+|+++.
T Consensus 146 SFravi~Vae~F~rLKs~l~s~-----f~~fAl~------r~lk-~lyR~~l~~L~l~~ 192 (362)
T KOG3875|consen 146 SFRAVISVAENFGRLKSSLGSF-----FGIFALF------RRLK-ILYRLLLKMLKLSP 192 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH------HHHH-HHHHHHHHHhCCCc
Confidence 3566666777777766665543 2333443 3446 88899999998763
No 4
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.26 E-value=0.05 Score=59.63 Aligned_cols=8 Identities=63% Similarity=1.111 Sum_probs=3.5
Q ss_pred CCCCCCCc
Q 022548 104 SLGSGMYG 111 (295)
Q Consensus 104 ~Yg~~~yg 111 (295)
+||++.||
T Consensus 1202 GygsGGYG 1209 (1282)
T KOG0921|consen 1202 GYGSGGYG 1209 (1282)
T ss_pred CcCCCCCC
Confidence 34444443
No 5
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=87.13 E-value=1.7 Score=38.48 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=6.9
Q ss_pred CCCCCchHH
Q 022548 183 APSSPPGFW 191 (295)
Q Consensus 183 e~ts~p~fw 191 (295)
|++++++|.
T Consensus 21 eestr~tFq 29 (158)
T PF04088_consen 21 EESTRATFQ 29 (158)
T ss_pred HHhhHHHHH
Confidence 778888884
No 6
>COG4371 Predicted membrane protein [Function unknown]
Probab=78.29 E-value=5.7 Score=38.79 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 022548 195 LRVMQGVVNFFGR 207 (295)
Q Consensus 195 Fq~IeSIV~AFG~ 207 (295)
+-+++.||++|-+
T Consensus 113 ~aian~vv~~~Rr 125 (334)
T COG4371 113 GAIANGVVGMMRR 125 (334)
T ss_pred HHHHHHHHHHHHh
Confidence 3444455555544
No 7
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=75.69 E-value=34 Score=34.00 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC-CCCCCCCCCCCCCCCCCc
Q 022548 197 VMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARFVLRLLGIKTKPKKV-NGPNGPPLPGPNNMHGNQ 275 (295)
Q Consensus 197 ~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~LarfvlrlLg~~tk~r~~-~~~~~~~~~~~~~~~~~~ 275 (295)
.++.|..++..|+.+.+++..++...-.+.-+|.+....|+..+.+|- .+.-.. .++..+.-++-|+|.+|.
T Consensus 467 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~L~~~v~~fk-------~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
T PRK15048 467 GIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFR-------LAASPLTNKPQTPSRPASEQPPAQP 539 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCCcccccccccccccccCCccCc
Confidence 344444555555555555555554444444555555556666666662 111111 244444445555555554
Q ss_pred cc
Q 022548 276 NF 277 (295)
Q Consensus 276 ~~ 277 (295)
..
T Consensus 540 ~~ 541 (553)
T PRK15048 540 RL 541 (553)
T ss_pred cC
Confidence 43
No 8
>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=69.32 E-value=3.7 Score=35.73 Aligned_cols=11 Identities=55% Similarity=1.265 Sum_probs=7.0
Q ss_pred CCCCCCCCCCC
Q 022548 73 PSRPWEQNYGS 83 (295)
Q Consensus 73 p~rp~~~~yg~ 83 (295)
|++||-++||+
T Consensus 69 p~~p~~~sYgt 79 (132)
T PF04626_consen 69 PQRPYVQSYGT 79 (132)
T ss_pred CCCceecccce
Confidence 34677777774
No 9
>COG4371 Predicted membrane protein [Function unknown]
Probab=68.18 E-value=6 Score=38.63 Aligned_cols=9 Identities=22% Similarity=0.398 Sum_probs=4.0
Q ss_pred cccccccCC
Q 022548 41 VVESSGTAN 49 (295)
Q Consensus 41 ~v~~sgt~~ 49 (295)
++..++|+.
T Consensus 18 ~~~~~gT~~ 26 (334)
T COG4371 18 ALAACGTLA 26 (334)
T ss_pred HHHHhhhHH
Confidence 444444433
No 10
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=51.23 E-value=83 Score=23.08 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccCCCC
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARF--VLRLLGIKTKPKK 256 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~Larf--vlrlLg~~tk~r~ 256 (295)
...+|++-+++-.+..+....... .-+.+++.+. .|..-+.+| +.++|++.|..+|
T Consensus 9 dR~~R~~~G~~l~~~~~~~~~~~~-----~~~~~~~g~~----ll~~g~~g~Cp~~~llgi~t~~~k 66 (66)
T PF11127_consen 9 DRIVRIIIGIVLLALGLLGLFGSW-----GWLLGFVGAM----LLVTGITGFCPLYALLGINTCKRK 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHhcccch-----HHHHHHHHHH----HHHHHHHCcCHhHHHhCCCCCCCC
Confidence 555666666665555554333222 1222222222 334445555 7888999888776
No 11
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.62 E-value=65 Score=25.63 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=16.8
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 022548 187 PPGFWISALRVMQGVVNFFGR 207 (295)
Q Consensus 187 ~p~fwqstFq~IeSIV~AFG~ 207 (295)
.+.||.+++-+|--+|++|..
T Consensus 10 N~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 10 NKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 467998888888888888876
No 12
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=47.83 E-value=77 Score=32.07 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022548 196 RVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARF 243 (295)
Q Consensus 196 q~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~Larf 243 (295)
..++.|..++..|+.+.+++..+++..-.+.-.|.++...|...+.||
T Consensus 468 ~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~F 515 (554)
T PRK15041 468 RGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVF 515 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666667776666666666667777777888888888
No 13
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=45.78 E-value=76 Score=30.09 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=15.9
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHH
Q 022548 222 FMTALLQLFDR----------SGMLYGELARF 243 (295)
Q Consensus 222 SF~AmlslaDr----------~G~L~g~Larf 243 (295)
..+.||.|+|+ |..|+.-|.+|
T Consensus 95 TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~W 126 (221)
T KOG0037|consen 95 TCRLMISMFDRDNSGTIGFKEFKALWKYINQW 126 (221)
T ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH
Confidence 45788899887 55666666666
No 14
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=44.01 E-value=90 Score=25.26 Aligned_cols=45 Identities=22% Similarity=0.136 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022548 201 VVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARFVLRLLG 249 (295)
Q Consensus 201 IV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~LarfvlrlLg 249 (295)
+|....++..=|+-|..+ +-.+++|+||+..|+.+|.+.-+||..
T Consensus 52 r~~~a~rL~~dl~in~~g----ialvl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 52 VVQRAVRLRHELALDWPG----IAVALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777665 568899999999999998888777643
No 15
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=43.96 E-value=1.1e+02 Score=29.59 Aligned_cols=52 Identities=6% Similarity=-0.079 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAFHLFMT------ALLQLFDRSGMLYGELARF 243 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~------AmlslaDr~G~L~g~Larf 243 (295)
.-++.+++.||+.+..+-+-++....++..-++ .+-++++++++|+..+.++
T Consensus 131 ~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~~~~~~~~l~~i~~l~~~~~~~ 188 (316)
T PRK11085 131 ELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQGDEYDEALSTLAELEDIGWKV 188 (316)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999998888865555 3456778888888776554
No 16
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=40.35 E-value=2.5e+02 Score=25.83 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022548 197 VMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELA 241 (295)
Q Consensus 197 ~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~La 241 (295)
.+..++..+-.++..+...+..+...+..+.++.++-..|+.+++
T Consensus 42 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~ 86 (276)
T PRK13922 42 VVGDVVSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELL 86 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555556666666666666666643
No 17
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=38.88 E-value=1.9e+02 Score=23.73 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHH
Q 022548 193 SALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQ----LFDRSGMLYGE 239 (295)
Q Consensus 193 stFq~IeSIV~AFG~fAqMLEST~~A~hsSF~Amls----laDr~G~L~g~ 239 (295)
.||..++.|-..+-.|...| ....-+|.-+-+-.+ +.+++..|..+
T Consensus 3 ~F~~~v~~I~~~i~~i~~~v-~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~ 52 (151)
T cd00179 3 EFFEEVEEIRGNIDKISEDV-EELQKLHSQLLTAPDADPELKQELESLVQE 52 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 35677777777777777666 344555554444433 45555555444
No 18
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=34.30 E-value=65 Score=27.08 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022548 195 LRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGE 239 (295)
Q Consensus 195 Fq~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~ 239 (295)
-++|..||++|+.- .-|+.-++++|+|-.-+.+
T Consensus 52 ~~lL~AIv~sf~~n------------~~i~~al~~vd~fs~~Y~I 84 (126)
T PF12921_consen 52 SRLLIAIVHSFGYN------------GDIFSALKLVDFFSRKYPI 84 (126)
T ss_pred HHHHHHHHHHHHhc------------ccHHHHHHHHHHHHHHcCC
Confidence 47999999999652 3356667888888765543
No 19
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=33.71 E-value=1e+02 Score=25.96 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 022548 198 MQGVVNFFGRISIL 211 (295)
Q Consensus 198 IeSIV~AFG~fAqM 211 (295)
|+.|+..+..+..+
T Consensus 137 l~~i~~~~~~i~~~ 150 (213)
T PF00015_consen 137 LEEIAESVEEISDS 150 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHhhh
Confidence 33333333333333
No 20
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=33.06 E-value=2e+02 Score=22.37 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=6.2
Q ss_pred HHHHHHHhccccCCC
Q 022548 241 ARFVLRLLGIKTKPK 255 (295)
Q Consensus 241 arfvlrlLg~~tk~r 255 (295)
.+-.++|||+.+.-|
T Consensus 104 l~~~l~llgi~~~~~ 118 (119)
T PF05746_consen 104 LKNGLDLLGIEPLEK 118 (119)
T ss_dssp HHHHHHHTT----S-
T ss_pred HHHHHHHcCCCcccc
Confidence 344667888765433
No 21
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT). Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway [].; PDB: 1S7O_A 1XSV_B.
Probab=32.95 E-value=1.3e+02 Score=25.06 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022548 204 FFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARFVL 245 (295)
Q Consensus 204 AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~Larfvl 245 (295)
+++.||..+.-+-||+|-.+.-..+.++.+..-.+.+.|+.+
T Consensus 35 SlsEIAe~~~iSRqaV~d~ikr~~~~L~~yE~kL~l~~k~~~ 76 (101)
T PF04297_consen 35 SLSEIAEELGISRQAVYDSIKRAEKKLEEYEEKLGLVEKFQK 76 (101)
T ss_dssp -HHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 578899999999999999998888877777766666666643
No 22
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=32.94 E-value=2.1e+02 Score=29.90 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=25.1
Q ss_pred HHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022548 198 MQGVV-NFFGRISILIDQNTQAFHLFMTALLQLFDR 232 (295)
Q Consensus 198 IeSIV-~AFG~fAqMLEST~~A~hsSF~AmlslaDr 232 (295)
+|.+| ++...+-.+|..++.+|.-+|..+|+.+|+
T Consensus 77 ~~~~v~~~s~~L~~~l~~~~~~F~~~f~~ll~~se~ 112 (557)
T PF01153_consen 77 FEQLVQESSRSLQHLLSTRARKFDEFFRELLRQSEN 112 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 444555778888888998888888887765
No 23
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=32.46 E-value=1.8e+02 Score=20.53 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022548 196 RVMQGVVNFFGRISILIDQNTQAFHLFMTAL 226 (295)
Q Consensus 196 q~IeSIV~AFG~fAqMLEST~~A~hsSF~Am 226 (295)
..|..++..|..++.-|+.....++..+..+
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666554
No 24
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins.
Probab=32.33 E-value=1.7e+02 Score=27.80 Aligned_cols=34 Identities=15% Similarity=0.467 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 022548 199 QGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSG 234 (295)
Q Consensus 199 eSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G 234 (295)
..|+++||. .-+++-++++.....-++.++||.|
T Consensus 40 ~~iL~~lG~--aFv~nR~mslf~l~LPvIGllER~G 73 (218)
T PF06149_consen 40 VEILETLGK--AFVDNRYMSLFILTLPVIGLLERYG 73 (218)
T ss_pred HHHHHHHHH--HHHhcchHHHHHHHHHHHHHHHHhh
Confidence 447777777 5678888999888899999999976
No 25
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=32.22 E-value=90 Score=32.31 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhccc
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFD----------RSGMLYGELARFVLRLLGIK 251 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaD----------r~G~L~g~LarfvlrlLg~~ 251 (295)
++|--.++-||...-.+|..+...-.. ..|+|+..| =|..|+..|..+|.||+-+.
T Consensus 127 ~~F~P~Le~iv~l~re~a~~~~~~~~~----YDaLLd~yEpg~t~~~ld~~F~~lk~~l~~l~~~i~~~~ 192 (494)
T PF02074_consen 127 SAFAPYLEKIVELQREIAEYLGYELSP----YDALLDDYEPGMTTEKLDEIFAELKAFLVPLLQKILEKQ 192 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTSTTSH----HHHHHHHHSTT--HHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCc----HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777788999999999999998844222 556665443 26777777777778777653
No 26
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=31.60 E-value=2.2e+02 Score=26.43 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022548 192 ISALRVMQGVVNFFG-----RISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARFVLR 246 (295)
Q Consensus 192 qstFq~IeSIV~AFG-----~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~Larfvlr 246 (295)
++-.|.|.+||.++- .|..+.-...+|.-+..+-+..=.|.++.+-++||+|++|
T Consensus 87 h~~iq~l~~iir~~Y~D~~D~~~rL~~tLa~a~~y~~~~l~~d~e~~s~v~~~lA~Fy~~ 146 (182)
T PF06861_consen 87 HAHIQWLMSIIRAVYRDHYDSWSRLCATLAYASMYAMRNLLNDHENASLVSHALAHFYLR 146 (182)
T ss_pred hHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 566677777777764 3555666666666555566666666678888889998654
No 27
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=30.38 E-value=2.3e+02 Score=27.07 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARF 243 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~Larf 243 (295)
+++.+..-..+++|..|+.|=-.+-.|+.=.-.+|..+||+.-.|-.-+-.|
T Consensus 39 ~a~~~A~~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~f 90 (231)
T cd07643 39 RATIVATSAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQF 90 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777666666666666666777777754443333333
No 28
>PRK05287 hypothetical protein; Provisional
Probab=30.31 E-value=1.6e+02 Score=28.13 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAF-HLFMTALLQLFDRSGM--LYGELARFVLRL 247 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~-hsSF~AmlslaDr~G~--L~g~Larfvlrl 247 (295)
+.+|+ ||.+ |-++.+.++...... |.+|.++..++|=+.+ ||.+|.|=|.|.
T Consensus 16 Rt~LR-LE~L---f~ql~~~~~~~~~~~h~~~~~~Lfelldv~~R~DlKsdLlKeLerq 70 (250)
T PRK05287 16 RTYLR-LEFL---FQQLTFNLAQDDPADHHVAFRTLFELLDVLERGDLKSDLLKELERQ 70 (250)
T ss_pred HHHHH-HHHH---HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 54555 4444 555555555555554 6778888777776653 555554444333
No 29
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.25 E-value=46 Score=33.29 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhc
Q 022548 191 WISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGEL---ARFVLRLLG 249 (295)
Q Consensus 191 wqstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~L---arfvlrlLg 249 (295)
++.+++.|...|..=..|++.|++.-..+...+.++|.+.|+.|.|-..| ++.+++...
T Consensus 93 ~~~~l~~i~~~l~~G~sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e~~~~ 154 (397)
T COG1459 93 LKQVLTSILEELESGKSLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLEKQAA 154 (397)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 47788888888888888999999999999999999999999988876664 444444433
No 30
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=30.07 E-value=1.7e+02 Score=25.18 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022548 196 RVMQGVVNFFGRISIL-IDQNTQAFHLFMTALLQLFDRSGMLYGELARF 243 (295)
Q Consensus 196 q~IeSIV~AFG~fAqM-LEST~~A~hsSF~AmlslaDr~G~L~g~Larf 243 (295)
.+|..++..+..++.. .+...-.....+.+++...|.++.-+..+...
T Consensus 97 ~~i~~ll~~~~~l~~~~~d~~l~~~~~a~~~l~~a~E~~~~era~~~~~ 145 (247)
T PF08376_consen 97 ELIDSLLDLIDALAQQSDDPELARQLRALTALLRAKEYAGQERALLAGA 145 (247)
T ss_dssp HHHHHHHTHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554443 34444444566666677777766655554333
No 31
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=29.93 E-value=3.8e+02 Score=23.50 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAFHL----FMTALLQLFDRSGMLYGELARFVLRLLG 249 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~hs----SF~AmlslaDr~G~L~g~LarfvlrlLg 249 (295)
.+.-|+-..|......+..||+....|+.. ....++..-|.+..|..+|.+++.+++.
T Consensus 16 ~~l~~~~~el~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~~~I~~~l~~~l~ 77 (236)
T PRK11115 16 AELESIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMMEVAIDEACVRIIA 77 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445566666555532 2344555556677888888888888764
No 32
>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=29.61 E-value=55 Score=28.74 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 022548 66 NAVGRPLPSRPWEQNYGSTSYGG 88 (295)
Q Consensus 66 ~~~~rp~p~rp~~~~yg~~~yg~ 88 (295)
.+|++||- .-++++||..+||+
T Consensus 67 ~ap~~p~~-~sYgtsYg~ggyGs 88 (132)
T PF04626_consen 67 AAPQRPYV-QSYGTSYGGGGYGS 88 (132)
T ss_pred cCCCCcee-cccceeecCCcccc
Confidence 56667763 47778888655554
No 33
>PRK13875 conjugal transfer protein TrbL; Provisional
Probab=29.60 E-value=1.2e+02 Score=31.37 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 022548 232 RSGMLYGELARFVLRLLG 249 (295)
Q Consensus 232 r~G~L~g~LarfvlrlLg 249 (295)
-++..-++|+|+|||+|.
T Consensus 49 a~g~~~di~a~LvrkiL~ 66 (440)
T PRK13875 49 AWGADEDVIARLVKKTLY 66 (440)
T ss_pred HhccccHHHHHHHHHHHH
Confidence 344444557777777754
No 34
>PHA02970 hypothetical protein; Provisional
Probab=29.11 E-value=1.9e+02 Score=24.97 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=9.0
Q ss_pred HHHHHHHHhccccCCCC
Q 022548 240 LARFVLRLLGIKTKPKK 256 (295)
Q Consensus 240 LarfvlrlLg~~tk~r~ 256 (295)
-.|+|.|=.|+.+|-|+
T Consensus 93 cKRiLnKD~gk~~k~r~ 109 (115)
T PHA02970 93 CKRILNKDTGKGSKTRP 109 (115)
T ss_pred HHHHHhhhhccCcccCC
Confidence 34555555566555554
No 35
>PRK13841 conjugal transfer protein TrbL; Provisional
Probab=27.37 E-value=2e+02 Score=29.41 Aligned_cols=53 Identities=13% Similarity=-0.023 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--------HHH--HHHHHHHHHHHHhc
Q 022548 197 VMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDR--------SGM--LYGELARFVLRLLG 249 (295)
Q Consensus 197 ~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr--------~G~--L~g~LarfvlrlLg 249 (295)
++..|++-|-.-+.--+.+.+..-...|..|-+.|= +.. +-++|+++|||+|.
T Consensus 29 vld~vl~~f~~aas~W~~~i~~~A~~LFw~La~I~~t~a~vw~Al~~ad~~d~~AeLvRkiL~ 91 (391)
T PRK13841 29 VLTTLENQVVTAAKGWETTVMNAARSLFWILAGIEIGIAAVWLAIQAASLDSWFAELVRRIMF 91 (391)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHH
Confidence 667777777766666666666666666666665553 111 34557888888764
No 36
>PRK09793 methyl-accepting protein IV; Provisional
Probab=27.25 E-value=2.5e+02 Score=28.15 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022548 198 MQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARF 243 (295)
Q Consensus 198 IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~Larf 243 (295)
++.|...+..++++.+.+..+++..-.+.-+|.+....|...+.+|
T Consensus 466 ~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~l~~~v~~F 511 (533)
T PRK09793 466 IEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRVAVF 511 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555555555555555444455555555566666666666
No 37
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=27.20 E-value=1.6e+02 Score=28.90 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHHhhhHHHHHHHHH------HHHHHHHHHHHHHH------------HHHHHHHHHhccccCCCC
Q 022548 210 ILIDQNTQAFHLFMT------ALLQLFDRSGMLYG------------ELARFVLRLLGIKTKPKK 256 (295)
Q Consensus 210 qMLEST~~A~hsSF~------AmlslaDr~G~L~g------------~LarfvlrlLg~~tk~r~ 256 (295)
|+||.--.+++-|=. =+..|-|++..|.. .|.++|||||-|+.++-.
T Consensus 167 QivElARDCL~KS~~~lITs~YF~ElsEnLekLl~ea~erS~~~~~~~~~~lvrklL~IisRPAR 231 (282)
T PF08926_consen 167 QIVELARDCLQKSREGLITSRYFYELSENLEKLLQEAHERSESEEVAFVTQLVRKLLIIISRPAR 231 (282)
T ss_dssp HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchhh
Confidence 666666666654432 23446667766654 378889999988755533
No 38
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.24 E-value=3.2e+02 Score=21.40 Aligned_cols=56 Identities=16% Similarity=-0.013 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQL--FDRSGMLYGELARFVLRL 247 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~Amlsl--aDr~G~L~g~Larfvlrl 247 (295)
.-+.+.|+.++..+.++..=++.+..+.-..+.+=++| -|.|..++.+|.|.-.||
T Consensus 9 d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl 66 (79)
T PF04380_consen 9 DDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKL 66 (79)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888888888888777777776776 345777777777765554
No 39
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=26.15 E-value=3.1e+02 Score=25.57 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSG 234 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G 234 (295)
+++-++...+++||..|+.+=.. ..+.--.-.+|.++||+.-
T Consensus 37 ~a~~~a~~~~~dAl~kia~~A~~-s~~sk~lG~~L~~i~~~~r 78 (223)
T cd07605 37 QALSQAAKVFFDALAKIGELASQ-SRGSQELGEALKQIVDTHK 78 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHH
Confidence 33444445555555555543222 2244444455555665543
No 40
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=25.66 E-value=3.8e+02 Score=28.38 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcc-ccCCCCCC
Q 022548 224 TALLQLFDRSGMLYGELARFVLRL--LGI-KTKPKKVN 258 (295)
Q Consensus 224 ~AmlslaDr~G~L~g~Larfvlrl--Lg~-~tk~r~~~ 258 (295)
..++-+|+-+...|..++|+|+-| ||+ +.|+|.+.
T Consensus 267 ~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~ 304 (518)
T KOG2568|consen 267 KVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGG 304 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcch
Confidence 445557777888999999998877 455 77888763
No 41
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=25.49 E-value=3.7e+02 Score=25.24 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=6.3
Q ss_pred HhhhHHHHHHHHHHHHH
Q 022548 212 IDQNTQAFHLFMTALLQ 228 (295)
Q Consensus 212 LEST~~A~hsSF~Amls 228 (295)
|...-..++..+.++..
T Consensus 89 L~~~~~~L~~lL~~~~~ 105 (267)
T PF11887_consen 89 LVDQRQQLDALLLSATG 105 (267)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 33333333333333333
No 42
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.26 E-value=2.1e+02 Score=32.57 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022548 194 ALRVMQGVVNFFGRISIL----------IDQNTQAFHLFMTALLQLFDRSGMLYGELARFVLRL 247 (295)
Q Consensus 194 tFq~IeSIV~AFG~fAqM----------LEST~~A~hsSF~AmlslaDr~G~L~g~Larfvlrl 247 (295)
++++.++++++|.+++|- =+...+.+.+.+.+||..+|+.-.+...|...++.+
T Consensus 583 A~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v 646 (1010)
T KOG1991|consen 583 AVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV 646 (1010)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 357899999999998873 233455567788888888887655555544444433
No 43
>COG5345 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.00 E-value=2.3e+02 Score=28.49 Aligned_cols=21 Identities=29% Similarity=0.749 Sum_probs=14.6
Q ss_pred CCCCCCCCchHHHHHHHHHHH
Q 022548 180 PYGAPSSPPGFWISALRVMQG 200 (295)
Q Consensus 180 pfge~ts~p~fwqstFq~IeS 200 (295)
||++-+.+|+|-++..+-+..
T Consensus 192 pfgPktPtpsfYraa~r~lr~ 212 (358)
T COG5345 192 PFGPKTPTPSFYRAAARNLRN 212 (358)
T ss_pred CCCCCCCChHHHHHHHHHHHH
Confidence 567678889998776655443
No 44
>COG2715 SpmA Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]
Probab=24.92 E-value=4.4e+02 Score=24.84 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=17.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q 022548 206 GRISILIDQNTQAFHLFMTALLQL 229 (295)
Q Consensus 206 G~fAqMLEST~~A~hsSF~Amlsl 229 (295)
|-|+.|.|+-|.+....+.-++.|
T Consensus 21 G~~~~v~eaif~~Ak~avei~igL 44 (206)
T COG2715 21 GTFAAVNEAIFNSAKTAVEIMIGL 44 (206)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888777766655553
No 45
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=24.47 E-value=3.1e+02 Score=28.33 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022548 195 LRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLF 230 (295)
Q Consensus 195 Fq~IeSIV~AFG~fAqMLEST~~A~hsSF~Amlsla 230 (295)
|+++|.++.++++ -||+.+..++.....+|+-+
T Consensus 178 FrALE~aLe~~~s---~L~~~~~~Le~~~~~~LdeL 210 (414)
T KOG2662|consen 178 FRALEVALEAACS---FLDSRLSELETEAYPLLDEL 210 (414)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 7899999999887 46777777777777777644
No 46
>PF06350 HSL_N: Hormone-sensitive lipase (HSL) N-terminus; InterPro: IPR010468 This domain is found in several mammalian hormone-sensitive lipase (HSL) proteins. Hormone-sensitive lipase, a key enzyme in fatty acid mobilisation, overall energy homeostasis, and possibly steroidogenesis, is acutely controlled via reversible phosphorylation by catecholamines and insulin [].; GO: 0016298 lipase activity, 0008203 cholesterol metabolic process, 0016042 lipid catabolic process
Probab=24.36 E-value=3.1e+02 Score=27.09 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=17.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022548 183 APSSPPGFWISALRVMQGVVNFFGRISILIDQN 215 (295)
Q Consensus 183 e~ts~p~fwqstFq~IeSIV~AFG~fAqMLEST 215 (295)
+.+...++ +|++.++++++-.+-.+.+-+-++
T Consensus 64 ~~tPgNGY-RSlv~Vv~~cl~~l~~~~r~i~~~ 95 (313)
T PF06350_consen 64 EETPGNGY-RSLVKVVDSCLLHLIHLCRYIASN 95 (313)
T ss_pred CCCCCCch-hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344 677777766666665554444443
No 47
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=24.35 E-value=1.8e+02 Score=31.28 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022548 194 ALRVMQGVVNF----FGRISILIDQNTQAFHLFMTALLQLFDRS 233 (295)
Q Consensus 194 tFq~IeSIV~A----FG~fAqMLEST~~A~hsSF~AmlslaDr~ 233 (295)
+|+-||.||++ +..+..-|..||+|+-+||.-+.+=+|++
T Consensus 274 Al~KiQ~VVN~q~~aL~~L~~qL~nnF~AISssI~dIy~RLd~l 317 (610)
T PF01601_consen 274 ALNKIQDVVNQQGQALNQLTSQLSNNFGAISSSIQDIYNRLDQL 317 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 35557777764 44556778889999999998888877764
No 48
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=24.14 E-value=1.8e+02 Score=30.60 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---------H-HHHHHHHHHHHHHHHhccccCCCCC
Q 022548 196 RVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFD---------R-SGMLYGELARFVLRLLGIKTKPKKV 257 (295)
Q Consensus 196 q~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaD---------r-~G~L~g~LarfvlrlLg~~tk~r~~ 257 (295)
--+|.||..--+||.++.-.. .-..|+|.+.| | |..|+.+|..+|.+++-+..++|+-
T Consensus 130 p~Lekiv~l~re~A~~~~~~~----~pYdaLld~yEpG~t~~~i~~vF~~Lk~~L~~ll~kv~~~~~~~~~~ 197 (497)
T COG2317 130 PYLEKIVELKREFAEYRGYEE----HPYDALLDLYEPGLTVRDVDRVFAELKKELVPLLDKVLEKGKSPRSD 197 (497)
T ss_pred HHHHHHHHHHHHHHHhccccc----CcHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 358889999999998887665 34566666544 2 6778888888888887765444443
No 49
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=24.13 E-value=6e+02 Score=25.00 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 022548 196 RVMQGVVNFFGRISILIDQNTQAFHLFMTALLQ-----LFDRSGMLYGELARFVLRL 247 (295)
Q Consensus 196 q~IeSIV~AFG~fAqMLEST~~A~hsSF~Amls-----laDr~G~L~g~Larfvlrl 247 (295)
.-.+..-+....+.+++.++|..+-..+..+|. |.|=...+...|+|++.|.
T Consensus 159 ~y~d~a~n~a~~~~~~~~~af~gm~dal~~fvttGk~~f~d~~~sil~dLa~i~~~~ 215 (332)
T TIGR01541 159 DYGETATNVASAAAQLATNAFGGMASNIAQMLTTGKANWKSFAVSVLSDIADIIAKL 215 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555665555555555544443 4444444444455554443
No 50
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=23.70 E-value=1.4e+02 Score=28.45 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHh
Q 022548 195 LRVMQGVVNFFGRI--SILIDQNTQAFHLFMTALLQLFDRSGMLYGELA----------------RFVLRLL 248 (295)
Q Consensus 195 Fq~IeSIV~AFG~f--AqMLEST~~A~hsSF~AmlslaDr~G~L~g~La----------------rfvlrlL 248 (295)
|+.++-||.-+++| .+++=..-..---+..-+++|+|++..+|.++. +|.+|||
T Consensus 13 ~~~~~p~v~Y~c~~ya~~~~l~~~~~~~e~~~~~~~Ll~~lE~~K~~~~~~~~~~~~~~~~~~v~~fa~~~f 84 (380)
T PF04652_consen 13 LEKRDPVVAYYCRLYAVEQILKLKLRSKECRQFLTSLLDKLEKMKAELGDNEAILDDVAAQAYVENFALKLF 84 (380)
T ss_dssp HHHCTHHHHHHHHHHHHHHHTT-TT--HHHHHHHHHHHHHHHHHHHCT---CHHC-HHHHHHHHHHHHHHHH
T ss_pred HhhcCCEEhHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhhhccCcHHhhcCHHHHHHHHHHHHHHHH
No 51
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=23.40 E-value=2.4e+02 Score=26.06 Aligned_cols=28 Identities=11% Similarity=-0.173 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccC
Q 022548 226 LLQLFDRSGMLYGELARFVLRLLGIKTK 253 (295)
Q Consensus 226 mlslaDr~G~L~g~LarfvlrlLg~~tk 253 (295)
++..+-++-++...+.+.++|.+..+|+
T Consensus 203 ~~~~~~~Ll~~~~l~~~~~~~~~~~~t~ 230 (325)
T PF02714_consen 203 FIGSPLELLRPPPLIIYYIRRKFFSKTP 230 (325)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 3344445555655566666666554333
No 52
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=23.01 E-value=3.4e+02 Score=26.85 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhccccCC
Q 022548 236 LYGELARFVLRLLGIKTKP 254 (295)
Q Consensus 236 L~g~LarfvlrlLg~~tk~ 254 (295)
|+..|..|+.++|-...++
T Consensus 322 lf~~l~~W~~~~l~~lr~~ 340 (341)
T PF12825_consen 322 LFDELIAWIEKILKFLRQG 340 (341)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7777888888887654433
No 53
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=22.78 E-value=2.7e+02 Score=28.54 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Q 022548 203 NFFGRISILIDQNTQAF-HLFMT-ALLQLFDRSGMLYGELARFVLRLLG 249 (295)
Q Consensus 203 ~AFG~fAqMLEST~~A~-hsSF~-AmlslaDr~G~L~g~LarfvlrlLg 249 (295)
+.++.+++..-.+..|+ +..|. +++.+.+.+..+..+|-+|+.+-+.
T Consensus 289 ~~v~~~~~~~id~v~a~~~~~~~~~~~~~~~~~~~~~~~lK~~~~~~v~ 337 (412)
T COG0232 289 ELVGAAAQAFIDDVRAADAGTFRHALLEFSSEAAALLKVLKKFLFKHVY 337 (412)
T ss_pred HHHHHHHHHhHHHHHhhhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHh
Confidence 77788888887888888 35666 7888888877777777777555444
No 54
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=22.22 E-value=1.4e+02 Score=26.01 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=25.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022548 208 ISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARFVLRL 247 (295)
Q Consensus 208 fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~Larfvlrl 247 (295)
+..||+.....--.....+..|++++..++..|.++|.++
T Consensus 25 v~~~l~~E~~~gl~~~~~y~~f~~~~~~~~~~l~~~L~~~ 64 (160)
T PF08484_consen 25 VARLLAEEKALGLNTIEYYENFAKRVEQSKAELREFLEKL 64 (160)
T ss_dssp HHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456655554434445666777777777777777776554
No 55
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.02 E-value=1.1e+02 Score=30.59 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022548 189 GFWISALRVMQGVVNFFGRISILIDQN 215 (295)
Q Consensus 189 ~fwqstFq~IeSIV~AFG~fAqMLEST 215 (295)
=||+-++-++--||.+|..++ ||..|
T Consensus 223 YlWH~tLPv~a~v~g~FAt~T-lLtKN 248 (364)
T COG4174 223 YLWHITLPVLALVLGGFATLT-LLTKN 248 (364)
T ss_pred HHHHHHHHHHHHHHhhHHHHH-HHhhh
Confidence 479999999999999999987 55555
No 56
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=21.68 E-value=2.3e+02 Score=22.32 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=26.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccccCC
Q 022548 212 IDQNTQAFHLFMTALLQLFDRSGM---LYGELARFVLRLLGIKTKP 254 (295)
Q Consensus 212 LEST~~A~hsSF~AmlslaDr~G~---L~g~LarfvlrlLg~~tk~ 254 (295)
+.-.+.-+|+ +..++.++...+. +..++.+++.+|--.....
T Consensus 42 ~~~~~p~tH~-l~~L~~~l~~~~~~~~~~~~~~~~l~~L~~~~i~~ 86 (113)
T smart00748 42 LGGEPPKTHS-LRELLSELEKLLRLPEFIDEIRECLNLLEEAYIKS 86 (113)
T ss_pred hcCCCCCCCC-HHHHHHHHHHhccchhhhHHHHHHHHHHHHHHhcc
Confidence 3334456688 7778888877663 3466777777765433333
No 57
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=21.41 E-value=1.8e+02 Score=21.41 Aligned_cols=49 Identities=20% Similarity=0.155 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022548 199 QGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARFVLRLLG 249 (295)
Q Consensus 199 eSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~LarfvlrlLg 249 (295)
-.|.+++..|+..|.=.-..+--+..|++.--++. |..+|...++|++-
T Consensus 8 L~v~~Fl~~F~~~L~L~~ftlddf~~AL~~~~~~~--ll~ei~~~LL~~l~ 56 (61)
T PF02791_consen 8 LMVWEFLNTFGEVLGLSPFTLDDFEQALLCNDPSG--LLAEIHCALLKALL 56 (61)
T ss_pred HHHHHHHHHHHHHHcCCcCCHHHHHHHHcCCCcch--hHHHHHHHHHHHHH
Confidence 34666777777777766666666666666544333 66777777776654
No 58
>PLN00090 photosystem II reaction center M protein; Provisional
Probab=21.36 E-value=1.2e+02 Score=25.91 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 022548 197 VMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARFVLRLLGIKTKPKKVN 258 (295)
Q Consensus 197 ~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr~G~L~g~LarfvlrlLg~~tk~r~~~ 258 (295)
.|.+||+++---.--||-| +-++|..+ |.-.+--..|-+|+++|..|+..
T Consensus 56 a~dsivealpt~t~~~EVN-------iLafIATa-----LFIlIPTaFLLILYVQT~Sr~~g 105 (113)
T PLN00090 56 ALDSIVEALPTNTLALEVQ-------FGAYLAVA-----LGTFLPCLFLINLFIQTESRKAG 105 (113)
T ss_pred HHHHHHHHcCccceeeehH-------HHHHHHHH-----HHHHHHHHHHHHHHhhhcccccc
Confidence 5666666654332223333 33444333 23334444666788888887754
No 59
>PF05133 Phage_prot_Gp6: Phage portal protein, SPP1 Gp6-like; InterPro: IPR021145 The portal protein is a bacteriophage component that forms a hole, or portal, enabling DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins [].; PDB: 2JES_Y.
Probab=21.28 E-value=3.4e+02 Score=25.40 Aligned_cols=64 Identities=27% Similarity=0.343 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcc
Q 022548 187 PPGFWISALRVMQGVVNFFGRISILIDQ------NTQAFHLFMTALLQLFDRSGMLYGE----LARFVLRLLGI 250 (295)
Q Consensus 187 ~p~fwqstFq~IeSIV~AFG~fAqMLES------T~~A~hsSF~AmlslaDr~G~L~g~----LarfvlrlLg~ 250 (295)
+....+..+..|+..+..|.....+-.. +..|+.....+++.-|++....+.. +.|+++.+++.
T Consensus 292 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~Sg~ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~~~~~~~~ 365 (441)
T PF05133_consen 292 PDASLENHLDRLKKDIYQFSGTPGLPDEYFGGNSSGEAIKAKYSALIQKAERKERYFGEALKRLLRLALAILGN 365 (441)
T ss_dssp -HHHHHHHHHHHHHHHHHHTT----S--SSTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhcccCCChHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444477778888888877777655433 3467888888888888876554444 56666666663
No 60
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=21.21 E-value=2.4e+02 Score=25.53 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhccc
Q 022548 225 ALLQLFDRSGMLYGE-LARFVLRLLGIK 251 (295)
Q Consensus 225 AmlslaDr~G~L~g~-LarfvlrlLg~~ 251 (295)
..+.++=-++.|.++ +..|+||.|+++
T Consensus 88 ~~~g~ll~~gamlGDl~~SFIKRRlgi~ 115 (175)
T PF01864_consen 88 LLLGFLLGLGAMLGDLPGSFIKRRLGIP 115 (175)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCC
Confidence 345566666766665 899999999975
No 61
>PF11435 She2p: RNA binding protein She2p; InterPro: IPR024261 She2p is a RNA binding protein which binds to RNA via a helical hairpin. The protein is required for the actin dependent transport of ASH1 mRNA in yeast, a form of mRNP translocation []. She2p contains a globular domain consisting of a bundle of five alpha-helices []. This entry represents the main structural domain of She2p.; GO: 0003723 RNA binding; PDB: 1XLY_A.
Probab=21.04 E-value=2.3e+02 Score=26.66 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=11.0
Q ss_pred HHHHHHHH---HHHHHHHH
Q 022548 232 RSGMLYGE---LARFVLRL 247 (295)
Q Consensus 232 r~G~L~g~---Larfvlrl 247 (295)
|...||-| |+||||||
T Consensus 30 rVstLrfERttLIKyVKKL 48 (204)
T PF11435_consen 30 RVSTLRFERTTLIKYVKKL 48 (204)
T ss_dssp T-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 34455544 99999998
No 62
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=20.95 E-value=1.6e+02 Score=28.80 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhccccCCCC
Q 022548 238 GELARFVLRLLGIKTKPKK 256 (295)
Q Consensus 238 g~LarfvlrlLg~~tk~r~ 256 (295)
+.+.|+++|++..++|+.+
T Consensus 126 G~~~Rll~~lf~~v~~pw~ 144 (280)
T TIGR00802 126 GLLTRLLGPLFRLVTKSWH 144 (280)
T ss_pred CcHHHHHHHHHHHhcCchH
Confidence 3467888888877766654
No 63
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=20.67 E-value=1.3e+02 Score=26.83 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022548 220 HLFMTALLQLFDRSGMLYGELARFVLRLLGI 250 (295)
Q Consensus 220 hsSF~AmlslaDr~G~L~g~LarfvlrlLg~ 250 (295)
-.+++++++..+.+-+|++.++.++-||.-+
T Consensus 110 ~LfmRTviq~~~~~p~L~~FV~~iL~rLi~k 140 (183)
T PF12295_consen 110 LLFMRTVIQALQKYPSLRSFVSNILSRLIQK 140 (183)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4588999999999999999988777777654
No 64
>PHA03325 nuclear-egress-membrane-like protein; Provisional
Probab=20.08 E-value=3.6e+02 Score=27.81 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAFH 220 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~h 220 (295)
|-+.+.|-.|--+|.+++++-..-+.+.|
T Consensus 122 q~l~~tvr~vc~~FNrl~f~Ar~rHYcd~ 150 (418)
T PHA03325 122 QRLIRAVRRVCVLFNRLTFTARLRHYCDH 150 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 44677888888999998877665555544
Done!