Query 022548
Match_columns 295
No_of_seqs 141 out of 163
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 07:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022548.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022548hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v9va1 a.29.10.1 (A:8-108) Mi 51.2 30 0.0022 26.1 7.6 52 201-254 30-99 (101)
2 d1xlya_ a.232.1.1 (A:) RNA-bin 34.0 23 0.0017 30.1 4.9 16 232-247 39-57 (232)
3 d1f7ua1 a.27.1.1 (A:484-607) A 29.4 90 0.0065 22.5 7.2 16 240-255 108-123 (124)
4 d2etha1 a.4.5.28 (A:1-140) Put 21.3 42 0.003 24.0 3.8 21 229-249 52-72 (140)
5 d2fbia1 a.4.5.28 (A:5-140) Pro 21.0 40 0.0029 24.1 3.6 59 188-248 2-69 (136)
6 d1w07a1 a.29.3.2 (A:273-461) A 19.4 22 0.0016 27.1 1.8 22 235-256 157-178 (189)
7 d1iq0a1 a.27.1.1 (A:467-592) A 17.6 1.7E+02 0.012 21.0 7.3 13 243-255 113-125 (126)
8 d2bbha1 d.328.1.1 (A:13-244) M 16.2 97 0.0071 23.8 5.2 50 194-243 158-209 (232)
9 d1lnwa_ a.4.5.28 (A:) MexR rep 16.2 1.4E+02 0.01 21.2 5.8 21 228-248 55-75 (141)
10 d2ddha1 a.29.3.2 (A:278-460) P 15.7 29 0.0021 26.3 1.7 57 192-255 106-169 (183)
No 1
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated serine/threonine-protein kinase 3, MAST3 (KIAA0561) {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.15 E-value=30 Score=26.14 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH------HHHHHHHHHHHHHHH------------HHHHHHHHhccccCC
Q 022548 201 VVNFFGRISILIDQNTQAFHLFMT------ALLQLFDRSGMLYGE------------LARFVLRLLGIKTKP 254 (295)
Q Consensus 201 IV~AFG~fAqMLEST~~A~hsSF~------AmlslaDr~G~L~g~------------LarfvlrlLg~~tk~ 254 (295)
|+.|+.. |+||.--.+++-|-. =+..|-|++.+|..+ |.++|||||-|+.+|
T Consensus 30 vl~FvhH--QiiElARDCL~KS~e~lITs~YF~Else~LekLl~ea~erSe~~~~~~i~~lvkkLL~IIsRP 99 (101)
T d1v9va1 30 VLGFIHH--QIVELARDCLAKSGENLVTSRYFLEMQEKLERLLQDAHERSDSEEVSFIVQLVRKLLIIISRP 99 (101)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHH--HHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcccC
Confidence 3444443 667776666655542 234566677666433 788999999887665
No 2
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.98 E-value=23 Score=30.10 Aligned_cols=16 Identities=44% Similarity=0.524 Sum_probs=11.3
Q ss_pred HHHHHHHH---HHHHHHHH
Q 022548 232 RSGMLYGE---LARFVLRL 247 (295)
Q Consensus 232 r~G~L~g~---Larfvlrl 247 (295)
|...||-| |+||||||
T Consensus 39 rvstLrfER~tLIK~VKKL 57 (232)
T d1xlya_ 39 RVATLRFERTTLIKFVKKL 57 (232)
T ss_dssp TCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 33445544 99999998
No 3
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.43 E-value=90 Score=22.53 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=9.9
Q ss_pred HHHHHHHHhccccCCC
Q 022548 240 LARFVLRLLGIKTKPK 255 (295)
Q Consensus 240 LarfvlrlLg~~tk~r 255 (295)
+.+-.++|||+.+.-|
T Consensus 108 vL~~gL~lLGI~~~e~ 123 (124)
T d1f7ua1 108 VLYNGMRLLGLTPVER 123 (124)
T ss_dssp HHHHHHHHHTCCCCSC
T ss_pred HHHHHhhhcCCCcccc
Confidence 3444667888865544
No 4
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=21.33 E-value=42 Score=24.04 Aligned_cols=21 Identities=10% Similarity=-0.034 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 022548 229 LFDRSGMLYGELARFVLRLLG 249 (295)
Q Consensus 229 laDr~G~L~g~LarfvlrlLg 249 (295)
||++++.-+..+.|.|+||.-
T Consensus 52 La~~l~i~~~~vs~~v~~L~~ 72 (140)
T d2etha1 52 IAEFLSTTKSNVTNVVDSLEK 72 (140)
T ss_dssp HHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHH
Confidence 666677778889999999964
No 5
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.98 E-value=40 Score=24.08 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Q 022548 188 PGFWISALRVMQGVVNFFGRISILIDQNTQAFHLFMTA---------LLQLFDRSGMLYGELARFVLRLL 248 (295)
Q Consensus 188 p~fwqstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~A---------mlslaDr~G~L~g~LarfvlrlL 248 (295)
++++.+.+++.+.++..|-.+-.=.+-|.. ++.+-. +-.||++++.=+..+.+.|+||.
T Consensus 2 ~sL~~~l~~~~~~~~~~~~~~l~~~glt~~--q~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~ 69 (136)
T d2fbia1 2 PSLTLTLLQAREAAMSFFRPSLNQHGLTEQ--QWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLE 69 (136)
T ss_dssp CCHHHHHHHHHHHHHTTTHHHHHHHTCCHH--HHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567778888888888777754332332322 221111 12255555555666788888885
No 6
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=19.43 E-value=22 Score=27.05 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhccccCCCC
Q 022548 235 MLYGELARFVLRLLGIKTKPKK 256 (295)
Q Consensus 235 ~L~g~LarfvlrlLg~~tk~r~ 256 (295)
.|+.+|+|+|+|-+.+..+++.
T Consensus 157 Vl~~~iar~llk~~~~~~~g~~ 178 (189)
T d1w07a1 157 VLQLQVARFLMKTVAQLGSGKV 178 (189)
T ss_dssp HHHHHHHHHHHHHHTTTTTSCC
T ss_pred HHHHHHHHHHHHHHHHhhCCCC
Confidence 4667789998888887666543
No 7
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=17.58 E-value=1.7e+02 Score=21.00 Aligned_cols=13 Identities=38% Similarity=0.360 Sum_probs=8.5
Q ss_pred HHHHHhccccCCC
Q 022548 243 FVLRLLGIKTKPK 255 (295)
Q Consensus 243 fvlrlLg~~tk~r 255 (295)
-.++|||+...-|
T Consensus 113 ~gL~lLGI~~~e~ 125 (126)
T d1iq0a1 113 TGLDLLGIPAPEV 125 (126)
T ss_dssp HHHHHTTCCCCSC
T ss_pred HHhhhcCCCcccc
Confidence 3567888865544
No 8
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=16.18 E-value=97 Score=23.75 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHH-HHHHHHHHHHHHHHHHHHH
Q 022548 194 ALRVMQGVVNFFGRISILIDQNTQAFH-LFMT-ALLQLFDRSGMLYGELARF 243 (295)
Q Consensus 194 tFq~IeSIV~AFG~fAqMLEST~~A~h-sSF~-AmlslaDr~G~L~g~Larf 243 (295)
++.+|..||+.+-.+...|+.....+= ..|. .--.+.+++..||..|.++
T Consensus 158 l~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~i~~lrr~l~~l 209 (232)
T d2bbha1 158 LYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVEL 209 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 456788888888888888887766662 2221 1223456677777777666
No 9
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.16 E-value=1.4e+02 Score=21.17 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022548 228 QLFDRSGMLYGELARFVLRLL 248 (295)
Q Consensus 228 slaDr~G~L~g~LarfvlrlL 248 (295)
+|+++++.-+..+.|.|++|-
T Consensus 55 ~la~~l~~~~~~vsr~l~~L~ 75 (141)
T d1lnwa_ 55 DLGRQMCRDKALITRKIRELE 75 (141)
T ss_dssp HHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHCccHhHHHHHHHHHH
Confidence 366677777788999999984
No 10
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.68 E-value=29 Score=26.31 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhccccCCC
Q 022548 192 ISALRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDR-------SGMLYGELARFVLRLLGIKTKPK 255 (295)
Q Consensus 192 qstFq~IeSIV~AFG~fAqMLEST~~A~hsSF~AmlslaDr-------~G~L~g~LarfvlrlLg~~tk~r 255 (295)
....++++-.++.||+...+-|+- |.-++.=+.- -..|+-.++|+|+|.+.+..+++
T Consensus 106 e~a~~~~~~a~qi~GG~Gy~~~~~-------i~~~~rD~~~~~i~EGt~~vl~~~~ar~llk~~~~~~~g~ 169 (183)
T d2ddha1 106 WTANAGIEECRMACGGHGYSHSSG-------IPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGK 169 (183)
T ss_dssp HHHHHHHHHHHHHTTHHHHSGGGS-------HHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCccCcccc-------chhHHhhcccceeeeCcHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344566677777777766554432 1111111100 12456667888888776554444
Done!