Query 022552
Match_columns 295
No_of_seqs 141 out of 1386
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:24:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05007 PII uridylyl-transfer 100.0 2.8E-32 6E-37 287.2 26.4 191 87-287 687-880 (884)
2 PRK01759 glnD PII uridylyl-tra 100.0 3.3E-32 7.2E-37 285.7 26.3 189 87-286 663-854 (854)
3 TIGR01693 UTase_glnD [Protein- 100.0 1.5E-29 3.2E-34 266.2 26.2 194 86-285 653-849 (850)
4 PRK00275 glnD PII uridylyl-tra 100.0 2.8E-29 6.2E-34 264.6 26.7 198 87-292 687-892 (895)
5 PRK04374 PII uridylyl-transfer 100.0 3.4E-28 7.4E-33 255.3 26.4 188 88-286 676-867 (869)
6 COG2844 GlnD UTP:GlnB (protein 100.0 1.3E-28 2.9E-33 249.7 22.1 193 86-288 669-864 (867)
7 PRK05092 PII uridylyl-transfer 100.0 6.2E-28 1.3E-32 255.8 27.1 198 87-291 718-920 (931)
8 PRK03059 PII uridylyl-transfer 100.0 4.5E-27 9.8E-32 247.0 25.8 189 87-286 664-855 (856)
9 PRK03381 PII uridylyl-transfer 100.0 8.1E-27 1.8E-31 242.9 25.1 186 87-282 586-773 (774)
10 cd04897 ACT_ACR_3 ACT domain-c 99.9 7.8E-22 1.7E-26 148.9 10.5 72 216-287 1-74 (75)
11 cd04896 ACT_ACR-like_3 ACT dom 99.8 2.3E-20 5E-25 140.9 10.2 72 217-288 1-75 (75)
12 cd04895 ACT_ACR_1 ACT domain-c 99.8 2.2E-20 4.9E-25 139.9 9.7 68 216-283 1-70 (72)
13 cd04897 ACT_ACR_3 ACT domain-c 99.7 9.9E-17 2.1E-21 121.1 11.1 73 101-174 1-73 (75)
14 cd04895 ACT_ACR_1 ACT domain-c 99.7 4.8E-16 1E-20 116.5 10.7 69 101-170 1-69 (72)
15 PRK11589 gcvR glycine cleavage 99.7 2.1E-15 4.5E-20 133.0 13.8 138 98-263 5-144 (190)
16 PRK00275 glnD PII uridylyl-tra 99.6 3.3E-15 7.1E-20 158.3 16.0 154 19-175 726-887 (895)
17 PRK01759 glnD PII uridylyl-tra 99.6 3.7E-15 8E-20 157.3 14.9 150 19-173 699-853 (854)
18 PRK05007 PII uridylyl-transfer 99.6 6E-15 1.3E-19 156.2 15.6 137 33-174 740-879 (884)
19 cd04925 ACT_ACR_2 ACT domain-c 99.6 5.9E-15 1.3E-19 110.9 11.0 72 102-174 1-73 (74)
20 cd04925 ACT_ACR_2 ACT domain-c 99.6 4.6E-15 1E-19 111.5 10.2 70 217-286 1-73 (74)
21 cd04900 ACT_UUR-like_1 ACT dom 99.6 7.3E-15 1.6E-19 109.9 10.6 71 102-173 2-73 (73)
22 cd04896 ACT_ACR-like_3 ACT dom 99.6 8E-15 1.7E-19 110.7 10.6 71 102-174 1-73 (75)
23 cd04927 ACT_ACR-like_2 Second 99.6 1E-14 2.3E-19 110.3 10.9 71 218-289 2-75 (76)
24 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.8E-14 4E-19 107.7 10.5 69 217-285 2-73 (73)
25 PRK04374 PII uridylyl-transfer 99.6 6.2E-14 1.3E-18 148.1 16.1 145 19-174 712-867 (869)
26 PRK03059 PII uridylyl-transfer 99.5 4.4E-14 9.5E-19 149.2 14.1 158 8-174 691-855 (856)
27 cd04927 ACT_ACR-like_2 Second 99.5 7.1E-14 1.5E-18 105.7 11.2 71 103-175 2-73 (76)
28 PRK05092 PII uridylyl-transfer 99.5 1.2E-13 2.6E-18 147.3 16.9 140 33-175 771-916 (931)
29 TIGR01693 UTase_glnD [Protein- 99.5 1.4E-13 3E-18 145.6 13.9 140 32-173 706-849 (850)
30 COG2844 GlnD UTP:GlnB (protein 99.5 5.9E-13 1.3E-17 136.4 12.8 152 15-173 707-861 (867)
31 PRK03381 PII uridylyl-transfer 99.4 2.1E-12 4.5E-17 135.3 14.4 128 32-169 636-772 (774)
32 PRK00227 glnD PII uridylyl-tra 99.4 9.5E-12 2.1E-16 128.4 16.2 176 61-286 515-691 (693)
33 cd04928 ACT_TyrKc Uncharacteri 99.4 5.3E-12 1.1E-16 93.6 9.6 65 102-173 2-67 (68)
34 cd04926 ACT_ACR_4 C-terminal 99.3 1.4E-11 3.1E-16 92.0 10.4 67 102-170 2-68 (72)
35 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 1.8E-11 4E-16 89.7 10.3 69 217-285 1-70 (70)
36 COG2716 GcvR Glycine cleavage 99.3 3.8E-12 8.3E-17 109.2 7.3 137 99-263 3-141 (176)
37 cd04926 ACT_ACR_4 C-terminal 99.3 3.2E-11 6.9E-16 90.1 10.2 65 217-281 2-67 (72)
38 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 5.4E-11 1.2E-15 87.2 10.5 69 102-172 1-69 (70)
39 cd04873 ACT_UUR-ACR-like ACT d 99.0 2.8E-09 6.1E-14 77.4 10.3 69 217-285 1-70 (70)
40 cd04873 ACT_UUR-ACR-like ACT d 99.0 5.5E-09 1.2E-13 75.9 10.5 68 103-172 2-69 (70)
41 cd04928 ACT_TyrKc Uncharacteri 98.9 1.9E-08 4E-13 74.7 9.4 64 217-285 2-67 (68)
42 PF13740 ACT_6: ACT domain; PD 98.7 2.6E-07 5.6E-12 69.6 10.3 65 101-173 2-66 (76)
43 PF01842 ACT: ACT domain; Int 98.5 1.8E-06 3.9E-11 61.7 10.1 61 102-171 1-63 (66)
44 PF01842 ACT: ACT domain; Int 98.5 3.4E-07 7.4E-12 65.5 6.0 39 217-255 1-39 (66)
45 PF13740 ACT_6: ACT domain; PD 98.5 1.8E-06 3.9E-11 65.0 9.7 65 216-285 2-66 (76)
46 cd04893 ACT_GcvR_1 ACT domains 98.4 1.5E-06 3.3E-11 65.6 9.0 62 102-171 2-63 (77)
47 cd04894 ACT_ACR-like_1 ACT dom 98.4 1E-06 2.2E-11 63.8 6.3 67 102-172 1-67 (69)
48 cd04870 ACT_PSP_1 CT domains f 98.4 2.1E-06 4.6E-11 64.2 7.8 64 103-173 1-64 (75)
49 cd04870 ACT_PSP_1 CT domains f 98.3 1.8E-06 4E-11 64.6 6.9 46 218-263 1-46 (75)
50 cd04872 ACT_1ZPV ACT domain pr 98.1 1.5E-05 3.2E-10 61.4 7.3 65 102-172 2-66 (88)
51 PRK00194 hypothetical protein; 98.0 4E-05 8.6E-10 59.1 8.7 40 216-255 3-42 (90)
52 cd04869 ACT_GcvR_2 ACT domains 98.0 4.5E-05 9.7E-10 57.2 8.7 62 103-171 1-68 (81)
53 cd04875 ACT_F4HF-DF N-terminal 98.0 1.8E-05 3.9E-10 58.8 6.4 35 103-137 1-35 (74)
54 cd04875 ACT_F4HF-DF N-terminal 98.0 1.3E-05 2.9E-10 59.5 5.5 44 218-263 1-44 (74)
55 cd04869 ACT_GcvR_2 ACT domains 98.0 2.4E-05 5.2E-10 58.7 6.8 46 218-263 1-48 (81)
56 cd04872 ACT_1ZPV ACT domain pr 98.0 5.2E-05 1.1E-09 58.4 8.4 39 217-255 2-40 (88)
57 cd04893 ACT_GcvR_1 ACT domains 97.9 7.1E-05 1.5E-09 56.4 8.7 39 217-255 2-40 (77)
58 PRK00194 hypothetical protein; 97.9 4.7E-05 1E-09 58.7 7.7 65 101-171 3-67 (90)
59 PF13291 ACT_4: ACT domain; PD 97.9 5E-05 1.1E-09 57.1 7.3 63 216-282 6-70 (80)
60 COG4747 ACT domain-containing 97.8 0.001 2.3E-08 54.3 13.5 111 103-262 5-116 (142)
61 PF13291 ACT_4: ACT domain; PD 97.7 0.00026 5.6E-09 53.2 8.1 63 102-171 7-71 (80)
62 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00046 1E-08 50.7 8.6 61 219-283 2-63 (74)
63 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00075 1.6E-08 49.5 9.5 61 104-171 2-63 (74)
64 PRK11589 gcvR glycine cleavage 97.6 0.00021 4.6E-09 63.3 7.3 49 215-263 7-55 (190)
65 PRK06027 purU formyltetrahydro 97.5 0.00057 1.2E-08 64.2 9.7 67 100-172 5-73 (286)
66 PRK13010 purU formyltetrahydro 97.5 0.00037 7.9E-09 65.6 7.8 66 101-171 9-76 (289)
67 PRK06027 purU formyltetrahydro 97.4 0.00086 1.9E-08 63.0 9.9 45 215-263 5-51 (286)
68 COG3830 ACT domain-containing 97.4 0.00021 4.6E-09 55.6 4.4 35 216-250 3-37 (90)
69 cd04905 ACT_CM-PDT C-terminal 97.4 0.002 4.3E-08 48.5 9.7 66 217-283 2-68 (80)
70 cd04894 ACT_ACR-like_1 ACT dom 97.4 0.00073 1.6E-08 49.1 6.4 67 217-284 1-67 (69)
71 TIGR00655 PurU formyltetrahydr 97.4 0.00094 2E-08 62.6 9.0 63 103-171 2-66 (280)
72 cd04877 ACT_TyrR N-terminal AC 97.3 0.0007 1.5E-08 50.3 6.5 35 218-252 2-36 (74)
73 PRK13011 formyltetrahydrofolat 97.3 0.0007 1.5E-08 63.6 7.7 46 216-263 7-52 (286)
74 cd04886 ACT_ThrD-II-like C-ter 97.3 0.002 4.3E-08 46.1 8.2 34 219-252 1-34 (73)
75 cd04886 ACT_ThrD-II-like C-ter 97.3 0.0033 7.2E-08 44.9 9.0 61 104-171 1-66 (73)
76 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.2 0.0018 4E-08 47.0 7.6 63 217-283 1-65 (79)
77 PRK13010 purU formyltetrahydro 97.2 0.00065 1.4E-08 63.9 6.3 46 216-263 9-54 (289)
78 COG3830 ACT domain-containing 97.2 0.00055 1.2E-08 53.3 4.7 66 101-172 3-68 (90)
79 cd04889 ACT_PDH-BS-like C-term 97.2 0.0012 2.7E-08 46.0 6.1 45 219-263 1-46 (56)
80 cd04879 ACT_3PGDH-like ACT_3PG 97.2 0.003 6.4E-08 44.8 8.1 44 219-262 2-47 (71)
81 cd04908 ACT_Bt0572_1 N-termina 97.2 0.0018 3.9E-08 46.9 6.9 45 217-263 2-46 (66)
82 cd04909 ACT_PDH-BS C-terminal 97.2 0.0039 8.5E-08 45.2 8.7 46 217-262 2-49 (69)
83 PRK13011 formyltetrahydrofolat 97.2 0.0024 5.3E-08 60.0 9.5 65 101-172 7-73 (286)
84 cd04878 ACT_AHAS N-terminal AC 97.1 0.0049 1.1E-07 43.9 8.9 60 218-282 2-63 (72)
85 TIGR00655 PurU formyltetrahydr 97.1 0.0023 4.9E-08 60.0 9.0 44 218-263 2-45 (280)
86 cd04877 ACT_TyrR N-terminal AC 97.1 0.0032 6.9E-08 46.7 7.9 59 103-171 2-60 (74)
87 TIGR00119 acolac_sm acetolacta 97.0 0.0051 1.1E-07 52.9 9.0 66 217-285 2-67 (157)
88 cd04888 ACT_PheB-BS C-terminal 97.0 0.0036 7.7E-08 46.0 7.1 62 218-282 2-64 (76)
89 COG0788 PurU Formyltetrahydrof 97.0 0.0021 4.5E-08 59.5 6.7 39 100-138 6-44 (287)
90 cd04882 ACT_Bt0572_2 C-termina 97.0 0.0043 9.4E-08 43.9 7.1 36 218-253 1-36 (65)
91 CHL00100 ilvH acetohydroxyacid 96.9 0.0027 5.8E-08 55.5 7.0 35 217-251 3-37 (174)
92 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.9 0.0082 1.8E-07 43.5 8.6 63 103-171 2-65 (79)
93 cd04902 ACT_3PGDH-xct C-termin 96.9 0.005 1.1E-07 44.7 7.3 44 219-262 2-47 (73)
94 cd04888 ACT_PheB-BS C-terminal 96.9 0.01 2.2E-07 43.5 8.9 62 103-171 2-65 (76)
95 cd04931 ACT_PAH ACT domain of 96.9 0.014 3.1E-07 45.5 10.0 71 215-287 13-84 (90)
96 PRK06737 acetolactate synthase 96.9 0.0077 1.7E-07 45.6 8.1 34 217-250 3-36 (76)
97 cd04903 ACT_LSD C-terminal ACT 96.9 0.008 1.7E-07 42.7 8.0 33 219-251 2-34 (71)
98 cd04889 ACT_PDH-BS-like C-term 96.8 0.0051 1.1E-07 42.8 6.5 45 104-148 1-46 (56)
99 cd04878 ACT_AHAS N-terminal AC 96.8 0.015 3.3E-07 41.3 9.0 62 103-171 2-64 (72)
100 PRK08178 acetolactate synthase 96.8 0.011 2.4E-07 46.7 8.5 66 215-284 7-72 (96)
101 PRK11895 ilvH acetolactate syn 96.7 0.011 2.4E-07 51.0 9.1 63 217-284 3-67 (161)
102 cd04898 ACT_ACR-like_4 ACT dom 96.7 0.0023 5E-08 48.1 4.1 67 219-285 3-74 (77)
103 PRK06737 acetolactate synthase 96.7 0.012 2.6E-07 44.6 8.1 63 102-171 3-66 (76)
104 PRK08178 acetolactate synthase 96.7 0.012 2.6E-07 46.5 8.4 66 99-171 6-71 (96)
105 PRK13562 acetolactate synthase 96.7 0.01 2.2E-07 45.8 7.7 65 102-171 3-67 (84)
106 cd04908 ACT_Bt0572_1 N-termina 96.6 0.0063 1.4E-07 44.0 6.0 39 102-140 2-40 (66)
107 cd04874 ACT_Af1403 N-terminal 96.6 0.015 3.2E-07 41.5 7.8 35 218-252 2-36 (72)
108 cd04909 ACT_PDH-BS C-terminal 96.6 0.024 5.3E-07 40.9 8.8 37 102-138 2-38 (69)
109 PRK08577 hypothetical protein; 96.5 0.031 6.7E-07 46.5 10.4 49 214-262 54-104 (136)
110 cd04901 ACT_3PGDH C-terminal A 96.5 0.0031 6.8E-08 45.4 3.8 44 219-262 2-45 (69)
111 COG0788 PurU Formyltetrahydrof 96.5 0.011 2.3E-07 54.9 8.1 63 215-279 6-73 (287)
112 cd04880 ACT_AAAH-PDT-like ACT 96.5 0.029 6.2E-07 41.5 9.1 64 219-283 2-66 (75)
113 PRK13562 acetolactate synthase 96.5 0.017 3.8E-07 44.5 7.9 65 217-284 3-68 (84)
114 cd02116 ACT ACT domains are co 96.5 0.02 4.3E-07 37.3 7.5 35 219-253 1-35 (60)
115 TIGR00119 acolac_sm acetolacta 96.5 0.028 6.1E-07 48.3 9.8 61 103-171 3-65 (157)
116 CHL00100 ilvH acetohydroxyacid 96.5 0.018 3.8E-07 50.4 8.6 66 102-173 3-68 (174)
117 cd04874 ACT_Af1403 N-terminal 96.4 0.029 6.2E-07 40.0 8.4 39 103-141 2-40 (72)
118 PRK11895 ilvH acetolactate syn 96.4 0.033 7.1E-07 48.2 9.9 62 102-171 3-66 (161)
119 cd04884 ACT_CBS C-terminal ACT 96.4 0.021 4.7E-07 41.8 7.7 34 104-137 2-35 (72)
120 PRK11152 ilvM acetolactate syn 96.4 0.027 5.9E-07 42.6 8.2 46 217-262 4-51 (76)
121 cd04904 ACT_AAAH ACT domain of 96.3 0.026 5.7E-07 42.0 7.9 63 218-283 2-65 (74)
122 cd04883 ACT_AcuB C-terminal AC 96.3 0.034 7.3E-07 40.3 8.3 35 217-251 2-36 (72)
123 cd04876 ACT_RelA-SpoT ACT dom 96.3 0.043 9.3E-07 37.6 8.5 37 104-140 1-37 (71)
124 cd04905 ACT_CM-PDT C-terminal 96.3 0.06 1.3E-06 40.3 9.8 48 102-149 2-50 (80)
125 PRK08577 hypothetical protein; 96.3 0.079 1.7E-06 44.1 11.4 76 90-171 43-122 (136)
126 cd04879 ACT_3PGDH-like ACT_3PG 96.3 0.019 4.2E-07 40.5 6.6 44 104-147 2-47 (71)
127 cd04884 ACT_CBS C-terminal ACT 96.2 0.023 5.1E-07 41.6 7.1 34 219-252 2-35 (72)
128 PRK04435 hypothetical protein; 96.2 0.052 1.1E-06 46.0 10.1 75 91-171 59-134 (147)
129 PRK07334 threonine dehydratase 96.0 0.032 7E-07 54.6 9.0 64 216-283 326-394 (403)
130 cd04876 ACT_RelA-SpoT ACT dom 96.0 0.031 6.8E-07 38.3 6.5 35 219-253 1-35 (71)
131 cd02116 ACT ACT domains are co 96.0 0.087 1.9E-06 34.1 8.4 35 104-138 1-35 (60)
132 PRK11152 ilvM acetolactate syn 95.9 0.06 1.3E-06 40.8 8.0 61 102-171 4-66 (76)
133 PRK07334 threonine dehydratase 95.8 0.062 1.3E-06 52.6 10.1 63 102-171 327-394 (403)
134 cd04902 ACT_3PGDH-xct C-termin 95.8 0.051 1.1E-06 39.2 7.2 44 104-147 2-47 (73)
135 cd04903 ACT_LSD C-terminal ACT 95.8 0.093 2E-06 37.1 8.5 34 104-137 2-35 (71)
136 PRK04435 hypothetical protein; 95.7 0.13 2.7E-06 43.7 10.0 66 214-282 67-133 (147)
137 cd04882 ACT_Bt0572_2 C-termina 95.7 0.033 7.1E-07 39.3 5.5 36 103-138 1-36 (65)
138 PRK00227 glnD PII uridylyl-tra 95.6 0.054 1.2E-06 56.8 9.1 68 217-285 547-617 (693)
139 cd04929 ACT_TPH ACT domain of 95.6 0.071 1.5E-06 40.0 7.4 62 219-283 3-65 (74)
140 cd04885 ACT_ThrD-I Tandem C-te 95.6 0.084 1.8E-06 38.4 7.5 61 104-171 1-61 (68)
141 TIGR00719 sda_beta L-serine de 95.4 0.094 2E-06 47.0 8.8 58 215-275 147-206 (208)
142 TIGR00656 asp_kin_monofn aspar 95.3 0.98 2.1E-05 44.0 16.4 108 99-247 258-371 (401)
143 PF13710 ACT_5: ACT domain; PD 95.2 0.06 1.3E-06 39.1 5.6 27 225-251 1-27 (63)
144 cd04883 ACT_AcuB C-terminal AC 95.2 0.1 2.2E-06 37.7 6.8 36 102-137 2-37 (72)
145 PF13710 ACT_5: ACT domain; PD 95.1 0.078 1.7E-06 38.4 5.9 56 110-171 1-56 (63)
146 cd04901 ACT_3PGDH C-terminal A 95.0 0.017 3.7E-07 41.5 2.3 35 104-138 2-36 (69)
147 PRK06635 aspartate kinase; Rev 95.0 0.5 1.1E-05 46.1 13.2 109 101-248 262-375 (404)
148 PRK11899 prephenate dehydratas 94.9 0.21 4.5E-06 46.8 9.9 53 216-268 194-247 (279)
149 COG2716 GcvR Glycine cleavage 94.8 0.02 4.2E-07 49.8 2.3 49 215-263 4-52 (176)
150 PRK10872 relA (p)ppGpp synthet 94.7 0.13 2.8E-06 54.3 8.7 62 216-282 666-730 (743)
151 cd04880 ACT_AAAH-PDT-like ACT 94.7 0.46 1E-05 34.9 9.3 64 104-171 2-66 (75)
152 PRK11092 bifunctional (p)ppGpp 94.6 0.32 6.9E-06 51.3 11.2 75 90-171 612-690 (702)
153 PRK10872 relA (p)ppGpp synthet 94.5 0.23 4.9E-06 52.6 9.9 75 90-171 652-731 (743)
154 PRK11092 bifunctional (p)ppGpp 94.5 0.23 5E-06 52.3 10.0 62 216-282 626-689 (702)
155 cd04931 ACT_PAH ACT domain of 94.4 0.65 1.4E-05 36.2 10.0 70 99-173 12-82 (90)
156 TIGR00691 spoT_relA (p)ppGpp s 94.3 0.27 5.8E-06 51.7 9.9 62 216-282 610-673 (683)
157 cd04930 ACT_TH ACT domain of t 94.1 0.28 6E-06 40.0 7.6 53 216-268 41-94 (115)
158 TIGR00691 spoT_relA (p)ppGpp s 94.1 0.39 8.5E-06 50.5 10.5 64 101-171 610-674 (683)
159 COG0317 SpoT Guanosine polypho 94.0 0.33 7.2E-06 50.9 9.7 76 89-171 612-691 (701)
160 PRK11790 D-3-phosphoglycerate 93.8 0.14 2.9E-06 50.6 6.3 61 215-278 337-397 (409)
161 COG0077 PheA Prephenate dehydr 93.8 0.33 7.1E-06 45.5 8.4 55 215-269 193-248 (279)
162 PRK06291 aspartate kinase; Pro 93.5 2.6 5.6E-05 42.2 14.8 110 99-249 319-434 (465)
163 PF13840 ACT_7: ACT domain ; P 93.4 0.36 7.8E-06 35.0 6.4 43 215-262 5-51 (65)
164 PRK08210 aspartate kinase I; R 93.3 4.9 0.00011 39.2 16.2 100 99-246 269-372 (403)
165 COG1707 ACT domain-containing 93.3 0.29 6.2E-06 42.7 6.5 40 103-142 4-43 (218)
166 cd04885 ACT_ThrD-I Tandem C-te 93.0 0.63 1.4E-05 33.7 7.3 60 219-283 1-61 (68)
167 cd04906 ACT_ThrD-I_1 First of 93.0 0.92 2E-05 34.5 8.5 61 103-171 3-64 (85)
168 PRK07431 aspartate kinase; Pro 92.8 11 0.00025 38.7 18.8 139 99-288 437-583 (587)
169 PRK10622 pheA bifunctional cho 92.4 0.9 2E-05 44.5 9.5 54 215-268 296-350 (386)
170 cd04871 ACT_PSP_2 ACT domains 92.3 0.091 2E-06 40.2 2.0 32 103-134 1-33 (84)
171 cd04871 ACT_PSP_2 ACT domains 92.2 0.098 2.1E-06 40.1 2.1 32 218-249 1-33 (84)
172 PRK08818 prephenate dehydrogen 92.2 0.38 8.3E-06 46.9 6.6 51 215-266 294-345 (370)
173 PRK13581 D-3-phosphoglycerate 92.1 0.51 1.1E-05 48.0 7.7 62 215-279 451-514 (526)
174 PRK09034 aspartate kinase; Rev 91.8 13 0.00029 37.0 17.4 112 99-251 306-423 (454)
175 cd04904 ACT_AAAH ACT domain of 91.8 1.4 3E-05 32.6 7.9 46 104-149 3-49 (74)
176 COG1707 ACT domain-containing 91.6 0.54 1.2E-05 41.0 6.1 50 219-268 5-54 (218)
177 COG4747 ACT domain-containing 91.5 1.3 2.8E-05 36.6 7.8 40 103-142 71-110 (142)
178 cd04929 ACT_TPH ACT domain of 91.4 1.7 3.7E-05 32.4 8.0 49 104-154 3-52 (74)
179 TIGR00657 asp_kinases aspartat 91.3 7.5 0.00016 38.5 14.9 109 99-248 300-413 (441)
180 PRK08198 threonine dehydratase 91.1 2.2 4.7E-05 41.7 10.7 67 99-171 325-395 (404)
181 PF13840 ACT_7: ACT domain ; P 91.1 0.71 1.5E-05 33.4 5.6 35 99-133 4-42 (65)
182 PRK06382 threonine dehydratase 91.1 0.63 1.4E-05 45.7 6.9 36 215-250 329-364 (406)
183 PRK06382 threonine dehydratase 90.9 1.7 3.7E-05 42.7 9.7 66 99-171 328-398 (406)
184 COG0317 SpoT Guanosine polypho 90.8 0.83 1.8E-05 48.0 7.8 40 216-255 627-666 (701)
185 cd04898 ACT_ACR-like_4 ACT dom 90.5 0.64 1.4E-05 35.1 4.9 67 104-172 3-73 (77)
186 cd04935 ACT_AKiii-DAPDC_1 ACT 90.5 3.7 8E-05 30.6 9.1 57 223-283 11-67 (75)
187 TIGR01327 PGDH D-3-phosphoglyc 90.5 0.74 1.6E-05 46.8 7.0 62 215-279 450-513 (525)
188 TIGR00719 sda_beta L-serine de 90.4 1.8 4E-05 38.6 8.7 41 99-139 146-186 (208)
189 PRK11898 prephenate dehydratas 90.3 1.9 4.1E-05 40.4 9.1 68 215-283 195-264 (283)
190 PRK06349 homoserine dehydrogen 90.3 1.5 3.2E-05 43.5 8.7 51 214-264 346-396 (426)
191 PRK06545 prephenate dehydrogen 90.1 0.64 1.4E-05 44.8 5.9 49 214-262 288-336 (359)
192 PRK09224 threonine dehydratase 89.8 17 0.00036 36.9 16.0 129 99-250 326-456 (504)
193 PRK07431 aspartate kinase; Pro 89.7 12 0.00026 38.4 15.3 124 99-250 346-474 (587)
194 PRK09436 thrA bifunctional asp 89.7 9 0.00019 41.3 14.6 113 99-248 313-431 (819)
195 TIGR01270 Trp_5_monoox tryptop 89.6 1.6 3.5E-05 43.7 8.3 55 214-268 29-85 (464)
196 PRK11790 D-3-phosphoglycerate 89.1 0.84 1.8E-05 45.0 6.0 48 100-147 337-384 (409)
197 PLN02317 arogenate dehydratase 88.9 2.7 5.8E-05 41.2 9.2 67 216-283 283-364 (382)
198 PRK09181 aspartate kinase; Val 88.7 11 0.00023 38.1 13.7 105 100-249 328-437 (475)
199 TIGR01127 ilvA_1Cterm threonin 88.6 4 8.7E-05 39.5 10.2 35 101-135 305-339 (380)
200 cd04932 ACT_AKiii-LysC-EC_1 AC 88.4 5.6 0.00012 29.6 8.8 56 223-283 11-67 (75)
201 TIGR01268 Phe4hydrox_tetr phen 88.2 3.1 6.7E-05 41.5 9.2 66 216-283 16-82 (436)
202 PRK06545 prephenate dehydrogen 88.2 1.9 4.2E-05 41.5 7.8 50 99-148 288-337 (359)
203 PLN02551 aspartokinase 88.0 29 0.00062 35.5 16.3 114 99-251 364-482 (521)
204 cd04922 ACT_AKi-HSDH-ThrA_2 AC 87.7 6.1 0.00013 27.5 8.3 44 218-263 3-49 (66)
205 COG0527 LysC Aspartokinases [A 87.7 33 0.00071 34.4 17.9 108 99-248 305-418 (447)
206 cd04930 ACT_TH ACT domain of t 87.3 4.3 9.3E-05 33.0 8.1 49 101-149 41-90 (115)
207 PRK12483 threonine dehydratase 87.1 32 0.00069 35.2 16.0 155 99-282 343-501 (521)
208 cd04934 ACT_AK-Hom3_1 CT domai 86.8 7.3 0.00016 28.8 8.5 54 224-283 12-65 (73)
209 COG0077 PheA Prephenate dehydr 86.7 4.3 9.2E-05 38.2 8.7 65 100-171 193-258 (279)
210 PLN02550 threonine dehydratase 86.4 38 0.00082 35.3 16.2 152 100-282 416-571 (591)
211 cd04906 ACT_ThrD-I_1 First of 85.8 3.9 8.5E-05 31.0 6.8 61 218-283 3-64 (85)
212 TIGR01127 ilvA_1Cterm threonin 85.6 6.5 0.00014 38.0 9.8 64 216-283 305-373 (380)
213 PRK11899 prephenate dehydratas 84.9 8.9 0.00019 36.0 10.0 52 101-154 194-246 (279)
214 COG0440 IlvH Acetolactate synt 84.1 4.9 0.00011 34.8 7.2 66 101-172 4-69 (163)
215 PRK06349 homoserine dehydrogen 83.0 6.8 0.00015 38.8 8.8 51 99-149 346-396 (426)
216 cd04937 ACT_AKi-DapG-BS_2 ACT 82.7 14 0.00031 26.0 8.3 28 218-245 3-33 (64)
217 PRK09084 aspartate kinase III; 82.7 39 0.00085 33.7 14.1 104 99-242 304-413 (448)
218 COG0440 IlvH Acetolactate synt 82.0 5.9 0.00013 34.3 7.0 35 216-250 4-38 (163)
219 cd04919 ACT_AK-Hom3_2 ACT doma 81.4 15 0.00034 25.5 8.4 34 218-251 3-39 (66)
220 cd04912 ACT_AKiii-LysC-EC-like 81.3 12 0.00027 27.4 7.7 62 217-283 2-67 (75)
221 COG2150 Predicted regulator of 80.4 6 0.00013 34.2 6.4 62 216-278 93-156 (167)
222 cd04868 ACT_AK-like ACT domain 80.4 3.7 8E-05 27.2 4.3 32 219-250 3-37 (60)
223 KOG2663 Acetolactate synthase, 80.3 3.7 8.1E-05 38.1 5.4 43 100-142 76-118 (309)
224 PRK08818 prephenate dehydrogen 79.9 5.1 0.00011 39.1 6.6 49 100-149 294-343 (370)
225 cd04890 ACT_AK-like_1 ACT doma 79.6 15 0.00032 25.5 7.4 38 223-264 10-47 (62)
226 cd04933 ACT_AK1-AT_1 ACT domai 79.4 16 0.00035 27.5 7.9 38 223-264 11-48 (78)
227 TIGR02079 THD1 threonine dehyd 79.2 17 0.00037 35.7 10.2 67 99-171 323-390 (409)
228 cd04911 ACT_AKiii-YclM-BS_1 AC 79.0 6.7 0.00015 29.7 5.6 62 224-291 12-73 (76)
229 cd04924 ACT_AK-Arch_2 ACT doma 78.8 19 0.0004 24.9 8.5 44 218-263 3-49 (66)
230 PRK08526 threonine dehydratase 78.5 15 0.00032 36.2 9.4 67 99-171 324-394 (403)
231 PRK10820 DNA-binding transcrip 78.5 2.5 5.5E-05 42.9 4.2 36 218-253 2-37 (520)
232 PRK08198 threonine dehydratase 78.1 8.8 0.00019 37.5 7.7 36 216-251 327-362 (404)
233 COG3978 Acetolactate synthase 77.8 8.7 0.00019 29.4 5.8 47 216-262 3-51 (86)
234 cd04913 ACT_AKii-LysC-BS-like_ 77.3 6.9 0.00015 27.5 5.2 27 223-249 9-35 (75)
235 cd04922 ACT_AKi-HSDH-ThrA_2 AC 77.2 21 0.00046 24.6 8.5 32 103-134 3-37 (66)
236 cd04937 ACT_AKi-DapG-BS_2 ACT 76.7 24 0.00051 24.9 8.3 28 103-130 3-33 (64)
237 PRK13581 D-3-phosphoglycerate 75.8 9.2 0.0002 39.0 7.4 41 99-139 450-490 (526)
238 COG2150 Predicted regulator of 75.8 5.7 0.00012 34.3 4.9 72 58-134 54-128 (167)
239 PRK10622 pheA bifunctional cho 75.3 21 0.00045 35.1 9.4 52 101-154 297-349 (386)
240 TIGR01124 ilvA_2Cterm threonin 74.3 1E+02 0.0023 31.2 15.8 127 99-249 323-451 (499)
241 cd04921 ACT_AKi-HSDH-ThrA-like 74.1 18 0.0004 26.3 6.9 67 217-289 2-72 (80)
242 cd04891 ACT_AK-LysC-DapG-like_ 73.9 5.2 0.00011 26.8 3.6 41 223-263 8-49 (61)
243 cd04912 ACT_AKiii-LysC-EC-like 72.5 32 0.0007 25.1 7.8 30 103-132 3-35 (75)
244 cd04916 ACT_AKiii-YclM-BS_2 AC 72.4 29 0.00062 23.9 8.4 34 218-251 3-39 (66)
245 PRK08961 bifunctional aspartat 71.1 84 0.0018 34.1 13.6 104 99-244 320-429 (861)
246 TIGR01327 PGDH D-3-phosphoglyc 71.1 9.4 0.0002 38.9 6.1 41 99-139 449-489 (525)
247 cd04868 ACT_AK-like ACT domain 71.0 26 0.00056 22.9 6.8 31 104-134 3-36 (60)
248 cd04891 ACT_AK-LysC-DapG-like_ 71.0 24 0.00052 23.4 6.5 28 108-135 8-35 (61)
249 PRK08639 threonine dehydratase 69.7 36 0.00077 33.6 9.7 67 99-171 334-401 (420)
250 PF05088 Bac_GDH: Bacterial NA 69.4 45 0.00097 38.6 11.3 87 88-175 474-567 (1528)
251 cd04892 ACT_AK-like_2 ACT doma 69.2 10 0.00022 25.5 4.3 32 218-249 2-36 (65)
252 cd04923 ACT_AK-LysC-DapG-like_ 68.7 33 0.00072 23.2 7.6 30 219-248 3-35 (63)
253 cd04913 ACT_AKii-LysC-BS-like_ 67.8 36 0.00078 23.7 7.1 27 108-134 9-35 (75)
254 cd04919 ACT_AK-Hom3_2 ACT doma 67.1 39 0.00085 23.4 8.5 34 103-136 3-39 (66)
255 cd04918 ACT_AK1-AT_2 ACT domai 66.5 43 0.00094 23.7 7.6 42 218-262 3-47 (65)
256 PRK14646 hypothetical protein; 65.2 87 0.0019 26.7 10.4 60 113-174 8-67 (155)
257 PRK11898 prephenate dehydratas 64.9 50 0.0011 30.9 9.2 52 101-154 196-249 (283)
258 PRK09466 metL bifunctional asp 64.1 2.2E+02 0.0047 30.9 16.2 105 99-247 315-425 (810)
259 TIGR01270 Trp_5_monoox tryptop 63.9 30 0.00065 34.9 7.8 52 98-149 28-81 (464)
260 PLN02317 arogenate dehydratase 63.5 51 0.0011 32.4 9.2 52 101-154 283-349 (382)
261 PRK08526 threonine dehydratase 63.4 42 0.00092 33.0 8.8 65 215-283 325-394 (403)
262 PRK14636 hypothetical protein; 62.8 89 0.0019 27.3 9.8 64 110-175 3-66 (176)
263 cd04932 ACT_AKiii-LysC-EC_1 AC 62.3 13 0.00029 27.5 3.9 30 103-132 3-35 (75)
264 cd04936 ACT_AKii-LysC-BS-like_ 62.1 46 0.00099 22.4 7.8 30 219-248 3-35 (63)
265 KOG2663 Acetolactate synthase, 61.9 9.3 0.0002 35.5 3.6 46 215-262 76-121 (309)
266 PRK14634 hypothetical protein; 61.8 1E+02 0.0022 26.3 10.3 61 112-174 7-67 (155)
267 COG4492 PheB ACT domain-contai 61.3 59 0.0013 27.5 7.8 49 94-142 65-113 (150)
268 cd04924 ACT_AK-Arch_2 ACT doma 61.0 51 0.0011 22.6 8.4 32 103-134 3-37 (66)
269 cd04890 ACT_AK-like_1 ACT doma 59.6 55 0.0012 22.5 6.8 25 108-132 10-34 (62)
270 cd04920 ACT_AKiii-DAPDC_2 ACT 57.3 65 0.0014 22.7 7.3 40 218-262 2-45 (63)
271 TIGR01268 Phe4hydrox_tetr phen 57.3 70 0.0015 32.1 9.0 66 101-171 16-82 (436)
272 cd04915 ACT_AK-Ectoine_2 ACT d 56.9 59 0.0013 23.2 6.5 42 218-262 4-48 (66)
273 PRK14645 hypothetical protein; 56.8 1.3E+02 0.0027 25.8 10.2 63 110-174 7-69 (154)
274 COG3978 Acetolactate synthase 56.6 90 0.0019 24.0 7.7 64 101-173 3-68 (86)
275 cd04921 ACT_AKi-HSDH-ThrA-like 55.4 76 0.0016 22.9 8.7 33 103-135 3-38 (80)
276 cd04935 ACT_AKiii-DAPDC_1 ACT 54.7 84 0.0018 23.1 7.7 57 108-171 11-67 (75)
277 cd04892 ACT_AK-like_2 ACT doma 53.2 65 0.0014 21.4 7.9 32 103-134 2-36 (65)
278 PRK06635 aspartate kinase; Rev 53.2 81 0.0017 30.6 8.8 34 99-132 338-374 (404)
279 cd04918 ACT_AK1-AT_2 ACT domai 52.9 79 0.0017 22.3 8.3 35 103-137 3-39 (65)
280 PRK10820 DNA-binding transcrip 51.0 26 0.00056 35.6 5.1 36 103-138 2-37 (520)
281 cd04916 ACT_AKiii-YclM-BS_2 AC 50.9 78 0.0017 21.6 8.4 32 103-134 3-37 (66)
282 TIGR02079 THD1 threonine dehyd 50.8 1.2E+02 0.0027 29.7 9.7 65 215-283 324-390 (409)
283 PRK00092 ribosome maturation p 50.6 1.5E+02 0.0033 25.0 10.3 58 114-175 9-66 (154)
284 PTZ00324 glutamate dehydrogena 50.0 1E+02 0.0022 34.1 9.6 63 88-150 216-283 (1002)
285 PRK00907 hypothetical protein; 46.9 98 0.0021 24.2 6.7 65 100-171 16-84 (92)
286 cd04914 ACT_AKi-DapG-BS_1 ACT 46.3 35 0.00075 24.5 3.9 42 218-263 3-45 (67)
287 COG4492 PheB ACT domain-contai 46.2 38 0.00082 28.6 4.4 49 215-263 71-120 (150)
288 PRK08639 threonine dehydratase 46.0 89 0.0019 30.8 7.9 65 215-283 335-401 (420)
289 PRK14640 hypothetical protein; 45.8 1.9E+02 0.004 24.5 10.2 76 114-227 8-85 (152)
290 TIGR00656 asp_kin_monofn aspar 45.8 1.2E+02 0.0027 29.3 8.8 33 99-131 335-370 (401)
291 PRK14647 hypothetical protein; 44.6 2E+02 0.0043 24.5 10.3 76 114-227 10-87 (159)
292 cd04936 ACT_AKii-LysC-BS-like_ 44.0 97 0.0021 20.7 8.3 30 104-133 3-35 (63)
293 PRK02047 hypothetical protein; 42.9 1.5E+02 0.0034 22.8 7.3 68 99-171 14-83 (91)
294 PRK12483 threonine dehydratase 42.5 1.2E+02 0.0026 31.1 8.3 45 215-261 344-388 (521)
295 COG3283 TyrR Transcriptional r 42.5 25 0.00054 34.8 3.2 36 218-253 2-37 (511)
296 PRK14639 hypothetical protein; 40.9 2.2E+02 0.0047 23.9 9.5 54 118-175 3-56 (140)
297 PRK14646 hypothetical protein; 39.3 2.4E+02 0.0052 24.0 9.4 68 228-295 8-76 (155)
298 cd04933 ACT_AK1-AT_1 ACT domai 38.1 33 0.00071 25.8 2.7 25 108-132 11-35 (78)
299 cd04923 ACT_AK-LysC-DapG-like_ 37.8 1.2E+02 0.0027 20.2 8.4 30 104-133 3-35 (63)
300 PRK14638 hypothetical protein; 37.6 2.5E+02 0.0055 23.7 10.2 59 114-175 10-68 (150)
301 PF05088 Bac_GDH: Bacterial NA 35.9 2.4E+02 0.0052 32.9 10.0 203 87-294 327-573 (1528)
302 PRK09034 aspartate kinase; Rev 35.9 1.4E+02 0.0029 29.9 7.5 33 215-247 307-342 (454)
303 cd04914 ACT_AKi-DapG-BS_1 ACT 35.2 69 0.0015 22.9 4.0 30 103-132 3-33 (67)
304 PRK15385 magnesium transport p 34.6 3E+02 0.0066 25.1 8.8 65 215-281 141-209 (225)
305 PRK08841 aspartate kinase; Val 33.9 2.6E+02 0.0055 27.5 8.9 62 215-287 317-378 (392)
306 PRK14634 hypothetical protein; 33.7 3E+02 0.0065 23.4 9.1 68 228-295 8-76 (155)
307 COG0779 Uncharacterized protei 33.2 3.1E+02 0.0068 23.5 9.9 58 112-174 8-66 (153)
308 PRK00341 hypothetical protein; 33.1 2.3E+02 0.005 21.9 6.9 65 101-171 17-83 (91)
309 PLN02550 threonine dehydratase 32.9 2.5E+02 0.0054 29.4 8.9 62 216-283 417-479 (591)
310 PRK08210 aspartate kinase I; R 31.6 89 0.0019 30.4 5.3 36 215-250 270-306 (403)
311 PRK09224 threonine dehydratase 31.6 2.8E+02 0.0061 28.1 9.0 63 215-282 327-390 (504)
312 cd07247 SgaA_N_like N-terminal 30.9 2E+02 0.0043 21.5 6.2 51 99-156 60-110 (114)
313 PRK14638 hypothetical protein; 30.9 3.3E+02 0.0071 23.0 8.6 65 231-295 12-76 (150)
314 cd04915 ACT_AK-Ectoine_2 ACT d 30.7 2E+02 0.0043 20.4 6.8 31 103-133 4-36 (66)
315 PRK14639 hypothetical protein; 30.6 3.2E+02 0.007 22.8 8.3 62 233-295 3-64 (140)
316 TIGR01124 ilvA_2Cterm threonin 30.6 3.1E+02 0.0067 27.8 9.1 63 215-283 324-387 (499)
317 PF09383 NIL: NIL domain; Int 30.2 2.1E+02 0.0046 20.6 8.5 61 104-171 7-68 (76)
318 PRK14636 hypothetical protein; 30.1 3.7E+02 0.0081 23.4 8.8 63 226-288 4-67 (176)
319 PF14226 DIOX_N: non-haem diox 28.1 15 0.00032 28.8 -0.7 49 223-290 10-58 (116)
320 PRK09084 aspartate kinase III; 26.4 3.3E+02 0.0071 27.2 8.3 34 215-248 305-341 (448)
321 cd04917 ACT_AKiii-LysC-EC_2 AC 26.2 2.2E+02 0.0048 19.6 7.9 42 217-263 2-47 (64)
322 COG2061 ACT-domain-containing 25.7 90 0.0019 27.0 3.5 34 101-134 5-38 (170)
323 TIGR00657 asp_kinases aspartat 25.4 4.3E+02 0.0094 26.0 9.0 35 99-133 376-413 (441)
324 PRK14637 hypothetical protein; 25.0 4.3E+02 0.0093 22.4 9.1 60 227-287 8-67 (151)
325 PF02576 DUF150: Uncharacteris 24.8 3.3E+02 0.0071 22.4 6.9 54 233-287 2-55 (141)
326 cd04920 ACT_AKiii-DAPDC_2 ACT 23.6 2.6E+02 0.0057 19.5 7.8 28 103-130 2-32 (63)
327 cd04934 ACT_AK-Hom3_1 CT domai 23.5 75 0.0016 23.3 2.4 54 109-171 12-65 (73)
328 COG3603 Uncharacterized conser 22.9 4.4E+02 0.0096 21.8 7.4 36 98-133 60-98 (128)
329 PRK00907 hypothetical protein; 22.5 2.9E+02 0.0062 21.6 5.6 63 216-282 17-83 (92)
330 PRK06291 aspartate kinase; Pro 22.0 5.5E+02 0.012 25.6 9.0 38 99-136 396-436 (465)
331 PRK00092 ribosome maturation p 21.9 4.8E+02 0.01 21.9 9.0 60 229-289 9-68 (154)
332 PRK08961 bifunctional aspartat 21.4 4E+02 0.0087 28.9 8.4 33 215-247 321-356 (861)
333 PRK04998 hypothetical protein; 21.1 3.8E+02 0.0082 20.4 7.0 68 99-171 13-80 (88)
334 cd04910 ACT_AK-Ectoine_1 ACT d 20.9 1.9E+02 0.0041 21.4 4.1 25 223-247 11-35 (71)
335 PRK14645 hypothetical protein; 20.9 5.3E+02 0.011 21.9 9.4 62 228-289 10-72 (154)
336 COG3283 TyrR Transcriptional r 20.5 1.3E+02 0.0027 30.0 3.8 32 103-134 2-33 (511)
337 PLN02639 oxidoreductase, 2OG-F 20.2 1.4E+02 0.0029 28.6 4.1 57 217-292 39-95 (337)
338 PRK08841 aspartate kinase; Val 20.2 1.6E+02 0.0034 29.0 4.6 33 99-131 316-348 (392)
339 PLN02551 aspartokinase 20.2 6E+02 0.013 26.0 8.9 36 99-134 443-480 (521)
No 1
>PRK05007 PII uridylyl-transferase; Provisional
Probab=100.00 E-value=2.8e-32 Score=287.16 Aligned_cols=191 Identities=24% Similarity=0.290 Sum_probs=167.2
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552 87 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 165 (295)
Q Consensus 87 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L 165 (295)
.+|.|.+++..+.++++|+|+++||||||++||++|+.+|+||++|+|+|+++|. +|+|+|++. +|.++ +++++++|
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~-~~~~~~~I 764 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPL-SQDRHQVI 764 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCC-CHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999965 799999997 78877 46799999
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022552 166 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV 244 (295)
Q Consensus 166 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I 244 (295)
+..|.++|.+.... .. . .+ +.+++...+.++++|.|+|+.+ ++|+|+|.|.|||||||+|+++|.++|++|
T Consensus 765 ~~~L~~aL~~~~~~-~~-~----~~--~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I 836 (884)
T PRK05007 765 RKALEQALTQSSPQ-PP-K----PR--RLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISL 836 (884)
T ss_pred HHHHHHHHcCCCCC-cc-c----cc--ccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEE
Confidence 99999999763211 11 1 11 1234556778899999998875 499999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 022552 245 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR 287 (295)
Q Consensus 245 ~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~~ 287 (295)
++|||+|.|++|+|+|||++ +|.+++++++++|+++|+++|..
T Consensus 837 ~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 837 HGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred EEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998 89999966899999999999854
No 2
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=100.00 E-value=3.3e-32 Score=285.71 Aligned_cols=189 Identities=18% Similarity=0.242 Sum_probs=164.1
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCCCCCChHHHHHH
Q 022552 87 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERI 165 (295)
Q Consensus 87 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~~~~d~~~le~L 165 (295)
.+|.|.++++.+.++++|+|+++||||||++|+++|+.+|+||++|+|+|+.++ ++|+|+|++. +|.++. ++++++|
T Consensus 663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~-~~~~~~l 740 (854)
T PRK01759 663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLE-FDRRRQL 740 (854)
T ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCC-HHHHHHH
Confidence 468888999999999999999999999999999999999999999999996554 5899999997 888874 6899999
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022552 166 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV 244 (295)
Q Consensus 166 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I 244 (295)
+..|.++|.+.. ..... . +.+++...|.++++|.|+|+.+ .+|+|+|.|.|||||||+|+++|.++|++|
T Consensus 741 ~~~L~~aL~~~~-~~~~~------~--~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i 811 (854)
T PRK01759 741 EQALTKALNTNK-LKKLN------L--EENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNL 811 (854)
T ss_pred HHHHHHHHcCCC-Ccchh------c--cccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEE
Confidence 999999997632 11100 1 1223455678899999998875 499999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 022552 245 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR 286 (295)
Q Consensus 245 ~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~ 286 (295)
++|||+|.|++|+|+|||++ +|++++++.+++|+++|+++|.
T Consensus 812 ~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l~ 854 (854)
T PRK01759 812 LNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNLS 854 (854)
T ss_pred EEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999998 8999998866999999998873
No 3
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.97 E-value=1.5e-29 Score=266.18 Aligned_cols=194 Identities=22% Similarity=0.292 Sum_probs=165.7
Q ss_pred CCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCCCCCChHHHHH
Q 022552 86 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLER 164 (295)
Q Consensus 86 ~~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~~~~d~~~le~ 164 (295)
.+.|.|.+++....++++|+|+++||||||++|+++|+.+|+||++|+|+|+.++ ++|+|+|++. +|.++.+++++++
T Consensus 653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~ 731 (850)
T TIGR01693 653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQE 731 (850)
T ss_pred CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHH
Confidence 3468899988777899999999999999999999999999999999999977655 5899999996 7888877788999
Q ss_pred HHHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCce
Q 022552 165 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVD 243 (295)
Q Consensus 165 L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~ 243 (295)
|++.|.++|.+.. .....+. ++.+.+++...+.++++|.|+|+.+ ++|+|+|.|.|||||||+|+++|+++|++
T Consensus 732 i~~~L~~~L~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~ 806 (850)
T TIGR01693 732 LLQGLVDVLAGLA-KDPDTIS----ARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLS 806 (850)
T ss_pred HHHHHHHHHcCCC-ccccccc----cccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCe
Confidence 9999999997632 1111111 1111234556778899999998875 49999999999999999999999999999
Q ss_pred EEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022552 244 VESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 285 (295)
Q Consensus 244 I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L 285 (295)
|++|+|+|.|++++|+|||++ .|.|++++++++|+++|+++|
T Consensus 807 i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 807 IQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred EEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998 899999888899999999886
No 4
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=2.8e-29 Score=264.59 Aligned_cols=198 Identities=21% Similarity=0.316 Sum_probs=167.2
Q ss_pred CCcEEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCC-ChHH
Q 022552 87 PMPHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVE-DPDL 161 (295)
Q Consensus 87 ~~p~V~i~~~~~---~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~-d~~~ 161 (295)
+.|.|.+....+ .++++|+|+++||||||++||++|+.+|+||++|+|+|+++|+ +|+|+|++. +|.++. ++++
T Consensus 687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r 765 (895)
T PRK00275 687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPAR 765 (895)
T ss_pred CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHH
Confidence 357777877665 5899999999999999999999999999999999999998876 799999997 787753 4689
Q ss_pred HHHHHHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhC
Q 022552 162 LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADV 240 (295)
Q Consensus 162 le~L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~ 240 (295)
+++|+..|.++|.+.. .+...++ + +.+++...+.+++.|.++++.+ ++|+|+|.|.||||||++|+.+|+++
T Consensus 766 ~~~i~~~L~~~L~~~~-~~~~~~~----~--~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~ 838 (895)
T PRK00275 766 IEQIREGLTEALRNPD-DYPTIIQ----R--RVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEF 838 (895)
T ss_pred HHHHHHHHHHHHcCCC-ccchhhh----h--hhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHC
Confidence 9999999999997632 2222332 1 2234455677889999887764 59999999999999999999999999
Q ss_pred CceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCcc
Q 022552 241 NVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETDI 292 (295)
Q Consensus 241 gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~~L~~~~~~~ 292 (295)
|++|++|+|.|.|+++.|+|||++ +|.++.++ ++++|+++|.++|..+....
T Consensus 839 ~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~ 892 (895)
T PRK00275 839 DLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEKD 892 (895)
T ss_pred CCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999998 89999886 88999999999997665443
No 5
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.4e-28 Score=255.34 Aligned_cols=188 Identities=20% Similarity=0.217 Sum_probs=159.7
Q ss_pred CcEEEEee-cCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552 88 MPHVLIDQ-DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 165 (295)
Q Consensus 88 ~p~V~i~~-~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L 165 (295)
.|.|.+.. ....+.+.|+|+++||||||++||++|+.+|+||++|+|+|+.+|+ +|+|+|+++ +|.. ++++++|
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i 751 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRL 751 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHH
Confidence 56666654 6777999999999999999999999999999999999999998876 799999996 5653 3678899
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022552 166 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV 244 (295)
Q Consensus 166 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I 244 (295)
+..|.++|.+. ..... +. ++ +.+++...|.++++|.++++.+ ++|+|+|.|.||||||++|+.+|+++|++|
T Consensus 752 ~~~l~~~l~~~-~~~~~-~~----~~-~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I 824 (869)
T PRK04374 752 AAALRQVLAGD-LQKVR-PA----RR-AVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRV 824 (869)
T ss_pred HHHHHHHHcCC-CCccc-cc----cc-cCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeE
Confidence 99999999763 22111 21 11 2245566788999999988664 699999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 022552 245 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR 286 (295)
Q Consensus 245 ~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~ 286 (295)
++|+|+|.|++++|+|||++ +|.++.++.+++|+++|+++|.
T Consensus 825 ~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 825 HDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred EEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 99999999999999999998 8899888866999999999884
No 6
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=249.75 Aligned_cols=193 Identities=27% Similarity=0.322 Sum_probs=169.3
Q ss_pred CCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHH
Q 022552 86 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLER 164 (295)
Q Consensus 86 ~~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~ 164 (295)
..+|.|.+......+.++|+|+++|+|.||+.+|+.+...|+||++|+|+|+.+|+ +|+|+|+++ +|.++. +++...
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~ 746 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAA 746 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHH
Confidence 45788998887778999999999999999999999999999999999999999985 799999997 888775 678788
Q ss_pred HHHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCCc-eEEEEEEeCCCcchHHHHHHHHHhCCce
Q 022552 165 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVD 243 (295)
Q Consensus 165 L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~-~t~IeV~a~DRPGLL~dIt~~L~~~gI~ 243 (295)
++..|.+++.++... + +.+.+.+++..+|+++|+|.|.++.++ .|+|||.+.||||||++|+++|+++|++
T Consensus 747 ~~~~l~~~l~s~~~~--~------~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~ 818 (867)
T COG2844 747 LRGELIEALLSGKAQ--P------PRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLS 818 (867)
T ss_pred HHHHHHHHHhcCCCC--C------ccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccc
Confidence 888888888764321 1 122255677789999999999988765 9999999999999999999999999999
Q ss_pred EEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 022552 244 VESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 288 (295)
Q Consensus 244 I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~~~ 288 (295)
|++|+|+|.|++|+|+|||++ .|++++.+.++.+.+.|.+++...
T Consensus 819 i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~ 864 (867)
T COG2844 819 LHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN 864 (867)
T ss_pred eeeeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999998 899998888889999998887643
No 7
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=6.2e-28 Score=255.84 Aligned_cols=198 Identities=21% Similarity=0.305 Sum_probs=167.6
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552 87 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 165 (295)
Q Consensus 87 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L 165 (295)
.++.|.+.+....++++|+|+++||||||++|+++|+.+|+||++|+|+|+.+++ +|+|+|++. +|.+..+++++++|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHH
Confidence 4678889888888999999999999999999999999999999999999987776 799999996 78776677899999
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCC-cccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCce
Q 022552 166 RLTIINNLLKYHPESSEQLAMGEAFGIKAP-EKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVD 243 (295)
Q Consensus 166 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~-~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~ 243 (295)
++.|.+++.+. ..+...+. ++ ..+ .+...|.+++.|.|+++.+ ++|+|+|.+.||||||++|+++|+++|+|
T Consensus 797 ~~~L~~~l~~~-~~~~~~~~----~r-~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~ 870 (931)
T PRK05092 797 AKAIEDALSGE-VRLPEALA----KR-TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLN 870 (931)
T ss_pred HHHHHHHHcCC-CCCccccc----cc-cCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCce
Confidence 99999988652 22112211 11 112 1345677889999988764 48999999999999999999999999999
Q ss_pred EEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCc
Q 022552 244 VESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETD 291 (295)
Q Consensus 244 I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~~L~~~~~~ 291 (295)
|++|+|.|.|+++.|+|||++ +|.++.++ .+++|+++|.++|..+..+
T Consensus 871 I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~ 920 (931)
T PRK05092 871 IASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAE 920 (931)
T ss_pred EEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCcccc
Confidence 999999999999999999998 89999887 7899999999999765444
No 8
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=4.5e-27 Score=246.97 Aligned_cols=189 Identities=20% Similarity=0.269 Sum_probs=158.4
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552 87 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 165 (295)
Q Consensus 87 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L 165 (295)
+.|.|.+......+.+.|+|+++||||||++||++|+.+|+||++|+|+|+.+|+ +|+|+|+++ +|. ..+++++++|
T Consensus 664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i 741 (856)
T PRK03059 664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLV 741 (856)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHH
Confidence 4677888888888999999999999999999999999999999999999998877 799999996 565 4456899999
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCC-CceEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022552 166 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDV 244 (295)
Q Consensus 166 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~-~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I 244 (295)
++.|.++|.+.. .....+ .+ +.+++...|..++.|.+.++. .++|+|+|.|+||||||++|+.+|+.+|++|
T Consensus 742 ~~~l~~~l~~~~-~~~~~~-----~~-~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I 814 (856)
T PRK03059 742 EHELAERLAEQA-PLPEPS-----KG-RLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSV 814 (856)
T ss_pred HHHHHHHHcCCC-Ccchhh-----cc-cccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeE
Confidence 999999997632 111111 11 224556678888889887765 4699999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHHHcC
Q 022552 245 ESAEIDTEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLR 286 (295)
Q Consensus 245 ~~A~I~T~g~~a~D~F~V~~~G~~l~~~-~~~~L~~~L~~~L~ 286 (295)
++|+|.|.|+++.|+|||+ +.++.++ ++++|++.|.++|.
T Consensus 815 ~~AkI~T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 815 HTAKINTLGERVEDTFLID--GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred EEEEEeecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999994 4445554 88999999998874
No 9
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=8.1e-27 Score=242.93 Aligned_cols=186 Identities=21% Similarity=0.209 Sum_probs=152.8
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHH
Q 022552 87 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 166 (295)
Q Consensus 87 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~ 166 (295)
.+|.|.+.... .+.++|+|+++||||||++||++|+.+|+||++|+|+|..+.++|+|+|+++ +|.+. .+++++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~ 659 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLR 659 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHH
Confidence 46888888878 8999999999999999999999999999999999999955556899999986 66542 368899
Q ss_pred HHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCceEE
Q 022552 167 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE 245 (295)
Q Consensus 167 ~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~ 245 (295)
..|+++|.++ .+....+... .+...+++...+..++.|.++++.+ ++|+|+|.|.||||||++|+.+|+++|+||+
T Consensus 660 ~~L~~~L~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~ 736 (774)
T PRK03381 660 QDLRRALDGD-LDVLARLAAR--EAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVR 736 (774)
T ss_pred HHHHHHHcCC-Cchhhhhhcc--cccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEE
Confidence 9999998763 2211222110 0000123445677888888887664 5899999999999999999999999999999
Q ss_pred EEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHH
Q 022552 246 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR 282 (295)
Q Consensus 246 ~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~ 282 (295)
+|+|.|.|+++.|+|||++ +|.+++++ +++|+++|.
T Consensus 737 ~AkI~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~ 773 (774)
T PRK03381 737 WARVATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL 773 (774)
T ss_pred EEEEeecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence 9999999999999999998 89999988 888888875
No 10
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.87 E-value=7.8e-22 Score=148.85 Aligned_cols=72 Identities=28% Similarity=0.472 Sum_probs=69.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCC
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRR 287 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~~L~~ 287 (295)
+|+|+|.|+|||||||+|+++|.++|++|++|+|+|+|++|+|+|||++ +|.||.++ ++++|+++|.++|.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999998 89999988 889999999999876
No 11
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=2.3e-20 Score=140.85 Aligned_cols=72 Identities=26% Similarity=0.400 Sum_probs=67.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHHHcCCC
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID--TEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLRRP 288 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~--T~g~~a~D~F~V~~~G~~l~~~-~~~~L~~~L~~~L~~~ 288 (295)
|+|+|.|+|||||||+|+++|.++|++|++|+|+ |+|++++|+|||..+|++|.++ +++.|+++|+++|..|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999999999 9999999999994489999887 7899999999999876
No 12
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=2.2e-20 Score=139.91 Aligned_cols=68 Identities=26% Similarity=0.461 Sum_probs=63.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRY 283 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~ 283 (295)
+|+|+|.++|||||||+|+++|+++|++|++|+|+|+|++++|+|||++ +|.|+.++ .+++|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 4899999999999999999999999999999999999999999999998 89999877 78899988753
No 13
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.71 E-value=9.9e-17 Score=121.09 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=69.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 174 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~ 174 (295)
+|+|+|.|+||||||++|+++|+++|++|..|+|.|.|+.+.|+|+|++. +|.++.++++.++|+..|.+++.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999997 89999998999999999998774
No 14
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=4.8e-16 Score=116.52 Aligned_cols=69 Identities=25% Similarity=0.424 Sum_probs=64.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 170 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~ 170 (295)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|+|++. +|.++.++++++.|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999999999999997 8999988888888888764
No 15
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.65 E-value=2.1e-15 Score=133.04 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=103.5
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccC
Q 022552 98 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH 177 (295)
Q Consensus 98 ~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~ 177 (295)
...+.+|+|.|+||||+++.++++|+++||||.+.++..+++.|.-++.|. +.+ ..+++|+..|...-..
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~----~~~~~le~~L~~l~~~-- 74 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSW----NAITLIESTLPLKGAE-- 74 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CCh----hHHHHHHHHHHhhhhh--
Confidence 457789999999999999999999999999999999999999887667673 332 4667888877663211
Q ss_pred CCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC--e
Q 022552 178 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--V 255 (295)
Q Consensus 178 ~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~--~ 255 (295)
.++...+ + +...+ . ....+..+.++|.+.|||||+++||++|+++|+||.+++..|++. .
T Consensus 75 ~~L~i~v-----~--~~~~~-----~------~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~ 136 (190)
T PRK11589 75 LDLLIVM-----K--RTTAR-----P------RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGE 136 (190)
T ss_pred cCeEEEE-----E--ecccc-----c------cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCC
Confidence 1111000 0 00000 0 011122589999999999999999999999999999999999995 6
Q ss_pred eeeEEEEE
Q 022552 256 AKDKFHVS 263 (295)
Q Consensus 256 a~D~F~V~ 263 (295)
..+.|.+.
T Consensus 137 ~~~lf~~~ 144 (190)
T PRK11589 137 RPAQLHIQ 144 (190)
T ss_pred CcccEEEE
Confidence 77788876
No 16
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.64 E-value=3.3e-15 Score=158.35 Aligned_cols=154 Identities=16% Similarity=0.245 Sum_probs=114.9
Q ss_pred eeecccccCCCC-C--CCccceeeeeeecCCCcccc-chhhhhhccchhhhccccccCCC-CCCC-CC--cCcCCCCCcE
Q 022552 19 ALHRSKFLDSDF-A--APFSHDSFHLINFSRRFYEQ-GICLSRKKNILFASVNGTNAVSP-TPLK-SD--QDADYIPMPH 90 (295)
Q Consensus 19 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~--~~~~~~~~p~ 90 (295)
+.++-...+++| + .-+++|+|.|.|.+|.++.. ++.+.+++..|...+......+. .... +. ..+ .+ +|.
T Consensus 726 ~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 803 (895)
T PRK00275 726 DQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHF-AF-PTQ 803 (895)
T ss_pred HHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCC-CC-CCE
Confidence 334444555554 2 26799999999999998754 35557644434333322111000 0000 00 122 23 689
Q ss_pred EEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022552 91 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 170 (295)
Q Consensus 91 V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~ 170 (295)
|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.++.++|+|+|++. +|.++.+++++++|++.|.
T Consensus 804 V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~ 882 (895)
T PRK00275 804 VTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAIC 882 (895)
T ss_pred EEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888999999997 8888877789999999999
Q ss_pred Hhhcc
Q 022552 171 NNLLK 175 (295)
Q Consensus 171 ~~L~~ 175 (295)
++|.+
T Consensus 883 ~~L~~ 887 (895)
T PRK00275 883 EQLDA 887 (895)
T ss_pred HHHhc
Confidence 98864
No 17
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.63 E-value=3.7e-15 Score=157.34 Aligned_cols=150 Identities=16% Similarity=0.243 Sum_probs=111.5
Q ss_pred eeecccccCCCCC---CCccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCCCCCC--cCcCCCCCcEEEE
Q 022552 19 ALHRSKFLDSDFA---APFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSD--QDADYIPMPHVLI 93 (295)
Q Consensus 19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~V~i 93 (295)
+.++-...+++|. .-+++|+|.|.|.+|.++. ++.+.++++.|...+............++ ..+ .+ +|.|.+
T Consensus 699 ~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~-~~-~~~V~~ 775 (854)
T PRK01759 699 GAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQLEQALTKALNTNKLKKLNLEENHKLQHF-HV-KTEVRF 775 (854)
T ss_pred HHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHHHHHHHHHHcCCCCcchhccccccccCC-CC-CCEEEE
Confidence 3344444455542 3689999999999999884 45556644445444433221111000011 112 22 689999
Q ss_pred eecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552 94 DQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 173 (295)
Q Consensus 94 ~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L 173 (295)
+++.++.+|+|+|.++||||||++|+++|.++|++|+.|+|+|.|+.+.|+|+|++. +|.++.++++ +.|+..|.++|
T Consensus 776 dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 776 LNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred ccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999997 8888876555 88888887765
No 18
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.62 E-value=6e-15 Score=156.20 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=108.4
Q ss_pred CccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCCC-CCC--cCcCCCCCcEEEEeecCCCCeEEEEEEeC
Q 022552 33 PFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPL-KSD--QDADYIPMPHVLIDQDSNSDATIVQLSFG 109 (295)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~p~V~i~~~~~~~~t~V~V~~~ 109 (295)
-+++|+|.|.|.+|.++. ++.+.+++..|.+.+..-........ .++ ..+ .+ +|.|.++++.++.+|+|+|.++
T Consensus 740 g~alD~F~V~d~~g~~~~-~~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~-~~-~~~V~~d~~~s~~~TvlEV~a~ 816 (884)
T PRK05007 740 GMAMDTFIVLEPDGSPLS-QDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHF-NV-PTEVSFLPTHTDRRSYMELIAL 816 (884)
T ss_pred CeEEEEEEEECCCCCCCC-HHHHHHHHHHHHHHHcCCCCCcccccccccccCCC-CC-CCEEEEccCCCCCeEEEEEEeC
Confidence 469999999999999884 45556655556555544321111100 011 122 22 6899999999999999999999
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552 110 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 174 (295)
Q Consensus 110 DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~ 174 (295)
||||||++|+++|.++|++|+.|+|+|.|+.+.|+|+|++. +|.++. +++.+.|++.|.++|.
T Consensus 817 DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~-~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 817 DQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA-DRRALN-EELQQELRQRLTEALN 879 (884)
T ss_pred CchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC-CCCcCC-HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999996 888886 6788999999988875
No 19
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=5.9e-15 Score=110.95 Aligned_cols=72 Identities=25% Similarity=0.300 Sum_probs=65.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCC-CCCCCChHHHHHHHHHHHHhhc
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDT-GRKVEDPDLLERIRLTIINNLL 174 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~-g~~~~d~~~le~L~~~L~~~L~ 174 (295)
|+|+|+++||||||++|+++|+++||||++|+++|.++.+.|+|+|+++ + |.++.+++++++|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999998888999999986 5 7777778899999999988764
No 20
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=4.6e-15 Score=111.51 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=65.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-C-CCCCChH-HHHHHHHHHHHHcC
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-G-GAALNSS-LSQVLVNCLRYYLR 286 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~-G~~l~~~-~~~~L~~~L~~~L~ 286 (295)
|+|+|.++||||||++|+++|+++|+||++|++.|.|+++.|+|+|++ . |.++.++ ++++|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999997 5 8888776 78999999998875
No 21
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=7.3e-15 Score=109.90 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=63.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 173 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L 173 (295)
+.|+|+++||||||++++++|+.+|+||++|+|+|.+++ ++|+|+|++. +|.++.+++++++|++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999999755 5799999986 7777767789999999987753
No 22
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=8e-15 Score=110.71 Aligned_cols=71 Identities=21% Similarity=0.409 Sum_probs=66.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 174 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~--T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~ 174 (295)
|+++|.++||||||++|+++|+++|++|+.|+|. |.|+.+.|+|+| +. +|.++.++++.+.|+..|.+++.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 999999999999 64 78888888999999999998775
No 23
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=1e-14 Score=110.30 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=63.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeeeeEEEEEe-CCCCCCh-HHHHHHHHHHHHHcCCCC
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNS-SLSQVLVNCLRYYLRRPE 289 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T-~g~~a~D~F~V~~-~G~~l~~-~~~~~L~~~L~~~L~~~~ 289 (295)
+++|.++||||||++|+++|+++|++|.+|+|.| .++++.|+|+|++ +|. ..+ +++++|++.|+++|+..+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~~~ 75 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGDSM 75 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHchhc
Confidence 6899999999999999999999999999999996 8999999999998 555 444 488899999999998754
No 24
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=1.8e-14 Score=107.72 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=63.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHc
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYL 285 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~~L 285 (295)
+.|+|.++||||||++|+.+|+.+|+||.+|+|.|. ++++.|+|+|++ +|.++.++ ++++|++.|+++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 679999999999999999999999999999999988 599999999997 78888655 8889999998765
No 25
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.56 E-value=6.2e-14 Score=148.07 Aligned_cols=145 Identities=18% Similarity=0.146 Sum_probs=108.3
Q ss_pred eeecccccCCCCC---CCccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCC----CCC--CC--cCcCCCC
Q 022552 19 ALHRSKFLDSDFA---APFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPT----PLK--SD--QDADYIP 87 (295)
Q Consensus 19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~--~~~~~~~ 87 (295)
+.++-...++++. .-++||+|.|.|.+|.+ .+.+.+ +...++.+..+... ..+ ++ ..+ .+
T Consensus 712 ~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~----i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~- 782 (869)
T PRK04374 712 DRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQR----LAAALRQVLAGDLQKVRPARRAVPRQLRHF-RF- 782 (869)
T ss_pred HHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHH----HHHHHHHHHcCCCCccccccccCcccccCC-CC-
Confidence 3444444555443 37899999999998885 233555 44444444433211 010 11 222 33
Q ss_pred CcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHH
Q 022552 88 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 167 (295)
Q Consensus 88 ~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~ 167 (295)
+|.|.++++.+.++|+|+|+++||||||++|+++|+++|+||++|+|+|.++.++|+|+|++. +|.++.++++ +.|+.
T Consensus 783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~-~~l~~ 860 (869)
T PRK04374 783 APRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE-HDRPLSESAR-QALRD 860 (869)
T ss_pred CCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHH-HHHHH
Confidence 689999999999999999999999999999999999999999999999998889999999997 7887766555 88999
Q ss_pred HHHHhhc
Q 022552 168 TIINNLL 174 (295)
Q Consensus 168 ~L~~~L~ 174 (295)
.|.++|.
T Consensus 861 ~L~~~l~ 867 (869)
T PRK04374 861 ALCACLD 867 (869)
T ss_pred HHHHHhc
Confidence 9888764
No 26
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.55 E-value=4.4e-14 Score=149.23 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=111.2
Q ss_pred cccccccCCcceeecccccCCCC---CCCccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCCCC--CC--
Q 022552 8 LFSSTASSSSTALHRSKFLDSDF---AAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLK--SD-- 80 (295)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 80 (295)
||+.++. .++.++-...++++ ..-++||+|.|+|..|. +..++.+.++++.|...+..-...+..... ++
T Consensus 691 LFa~i~g--~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 767 (856)
T PRK03059 691 LFARICG--YFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQV 767 (856)
T ss_pred HHHHHHH--HHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccc
Confidence 4444443 34555556666665 34689999999998887 444455566444443333322110110000 11
Q ss_pred cCcCCCCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChH
Q 022552 81 QDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPD 160 (295)
Q Consensus 81 ~~~~~~~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~ 160 (295)
..| .+ +|.|.++++.+.++|+|+|+++||||||++||++|+.+|+||++|+|+|.++.++|+|+|++. +..+++
T Consensus 768 ~~~-~~-~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~----~~~~~~ 841 (856)
T PRK03059 768 KHF-PI-TPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS----GLSDNR 841 (856)
T ss_pred cCC-CC-CceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC----CCCCHH
Confidence 122 22 578999999999999999999999999999999999999999999999998888999999542 244678
Q ss_pred HHHHHHHHHHHhhc
Q 022552 161 LLERIRLTIINNLL 174 (295)
Q Consensus 161 ~le~L~~~L~~~L~ 174 (295)
++++|++.|.++|.
T Consensus 842 ~~~~l~~~L~~~L~ 855 (856)
T PRK03059 842 LQIQLETELLDALA 855 (856)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988763
No 27
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.55 E-value=7.1e-14 Score=105.74 Aligned_cols=71 Identities=24% Similarity=0.219 Sum_probs=62.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
+++|+++||||||++++++|+++|+||++|+|+|+.+ .++|+|+|++. +|. ..+++++++|++.|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999998544 55899999986 555 45678999999999998753
No 28
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.54 E-value=1.2e-13 Score=147.29 Aligned_cols=140 Identities=24% Similarity=0.323 Sum_probs=111.1
Q ss_pred CccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCC---CCC---CcCcCCCCCcEEEEeecCCCCeEEEEE
Q 022552 33 PFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTP---LKS---DQDADYIPMPHVLIDQDSNSDATIVQL 106 (295)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~p~V~i~~~~~~~~t~V~V 106 (295)
=+++|+|.|.+.+|.+...++.++++++.|...+..-...+... ..+ ...+ .+ +|.|.++++.+.++|+|.|
T Consensus 771 g~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~-~~-~~~V~~~~~~s~~~t~i~I 848 (931)
T PRK05092 771 GRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAF-HV-PPRVTIDNEASNRFTVIEV 848 (931)
T ss_pred CeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCC-CC-CCEEEEeeCCCCCeEEEEE
Confidence 47999999999999987666677775555554443211111100 001 1222 23 6899999999999999999
Q ss_pred EeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 107 SFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 107 ~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
+++||||||++|+++|+++|+||.+|+|.|.++.+.|+|+|++. +|.++.++++++.|+..|.++|.+
T Consensus 849 ~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 849 NGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred EECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998888999999997 888888888899999999998865
No 29
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.51 E-value=1.4e-13 Score=145.60 Aligned_cols=140 Identities=20% Similarity=0.245 Sum_probs=110.1
Q ss_pred CCccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCCC----CCCcCcCCCCCcEEEEeecCCCCeEEEEEE
Q 022552 32 APFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPL----KSDQDADYIPMPHVLIDQDSNSDATIVQLS 107 (295)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~ 107 (295)
.-+++|+|.|.+.+|.+...++.+.++++.|...+......+.... .++..-.-..+|.|.++++.++.+|+|+|.
T Consensus 706 ~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~ 785 (850)
T TIGR01693 706 DGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVR 785 (850)
T ss_pred CCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEE
Confidence 4789999999999999887666677766666666655332121101 111111111368999999999999999999
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552 108 FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 173 (295)
Q Consensus 108 ~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L 173 (295)
++|||||+++|+++|+++|+||..|+|.|.++...|+|+|++. .|.++.+ ++++.|+..|.++|
T Consensus 786 ~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 786 ALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred ECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC-CCCCCCH-HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888999999996 7888766 77888988887765
No 30
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.9e-13 Score=136.45 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=105.2
Q ss_pred CCcceeecccccCCCCCCCccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCCCCCC---cCcCCCCCcEE
Q 022552 15 SSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSD---QDADYIPMPHV 91 (295)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~V 91 (295)
+.-+.|+..+++-+ ..=+++|+|-|.|.+|.+++ +..+..++.-+...+.+.-..++.....+ +.| ++ +|.|
T Consensus 707 ~~g~~i~dAqi~tt--~dG~alDtfiv~~~~g~~~~-~dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f-~i-~p~v 781 (867)
T COG2844 707 RRGLSIVDAQIFTT--RDGYALDTFIVLEPDGFPVE-EDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHF-PI-PPRV 781 (867)
T ss_pred cCCCceeeeEEEEc--cCCceeeeEEEecCCCCccc-hhHHHHHHHHHHHHHhcCCCCCccccccCccccee-cc-CCce
Confidence 34444444443321 23579999999999999999 33333322222222222222221111111 345 44 6999
Q ss_pred EEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 92 LIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 92 ~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.|.++..+..++++|.+.||||||++++++|+++|++|++|+|.|.|+.+.|+|+|++. .|.++.+ +..+.+.+.|.+
T Consensus 782 ~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~-~~~~l~~-~~~q~l~~~ll~ 859 (867)
T COG2844 782 TILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQALNA-ELRQSLLQRLLE 859 (867)
T ss_pred eeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecc-ccccCCH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 7888754 333444444444
Q ss_pred hh
Q 022552 172 NL 173 (295)
Q Consensus 172 ~L 173 (295)
.+
T Consensus 860 al 861 (867)
T COG2844 860 AL 861 (867)
T ss_pred Hh
Confidence 34
No 31
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.41 E-value=2.1e-12 Score=135.31 Aligned_cols=128 Identities=20% Similarity=0.212 Sum_probs=93.3
Q ss_pred CCccceeeeeeecCCCccccchhhhhhccchhhhcccccc------CC-C--CCCCCCcCcCCCCCcEEEEeecCCCCeE
Q 022552 32 APFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNA------VS-P--TPLKSDQDADYIPMPHVLIDQDSNSDAT 102 (295)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~--~~~~~~~~~~~~~~p~V~i~~~~~~~~t 102 (295)
.-+++|+|.|.+..|.+.. +.++++.|.+.+..-.. .- . .+++ ...+ .+ +|.|.++++.+.+++
T Consensus 636 dg~~ld~F~V~~~~~~~~~----~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~v~~~~~~~~~~t 708 (774)
T PRK03381 636 DGVAVLEFVVSPRFGSPPD----AALLRQDLRRALDGDLDVLARLAAREAAAAAVP-VRRP-AA-PPRVLWLDGASPDAT 708 (774)
T ss_pred CCEEEEEEEEECCCCCcch----HHHHHHHHHHHHcCCCchhhhhhcccccccccc-cccC-CC-CcEEEEEECCCCCeE
Confidence 3789999999998887543 34433333333322110 00 0 0010 1222 22 678899999999999
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHH
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTI 169 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L 169 (295)
+|+|+++||||||++|+++|+++|+||++|+|+|.++.++|+|+|++. +|.++.++ .+.|++.|
T Consensus 709 ~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 709 VLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA-AGGPLADA--RAAVEQAV 772 (774)
T ss_pred EEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECC-CCCcCchH--HHHHHHHh
Confidence 999999999999999999999999999999999998889999999997 88887653 56666554
No 32
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.38 E-value=9.5e-12 Score=128.37 Aligned_cols=176 Identities=11% Similarity=0.094 Sum_probs=123.5
Q ss_pred chhhhccccccCCCCCCCCCcCcCCCCCcEEEEeecCCCCeEEEEEEe-CCCccHHHHHHHHHHHCCceEEEEEEEEcCC
Q 022552 61 ILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEGS 139 (295)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~~-~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~ 139 (295)
-|+...++.++++....+.. .. +..+... ...-.++|.. +|++|+|.+++++|+.+|++|++|++.+ .+
T Consensus 515 ~L~~~a~~~L~~~~~~~p~~----~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~ 584 (693)
T PRK00227 515 IVCSRARARLTDIRPVAPMF----AA-RSDIGLV----EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NG 584 (693)
T ss_pred HHHHHHHHHhcCCCCCCCCC----CC-ccccccc----ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CC
Confidence 37777777777776422111 11 1112221 1114677777 9999999999999999999999999999 55
Q ss_pred eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEE
Q 022552 140 VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLL 219 (295)
Q Consensus 140 ~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~I 219 (295)
..+..|.|... -|.++ ++ ..+++.+..++.+.-+. + ...++.+.+.+ +++
T Consensus 585 ~~~~~~~v~~~-~~~~~-~~---~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~-----~~~ 634 (693)
T PRK00227 585 PWSAEFDVRAN-GPQDF-DP---QEFLQAYKSGVYSELPD----P----------------APGITATFWHG-----NIL 634 (693)
T ss_pred ceEEEEEEecC-CCCCC-Ch---HHHHHHHHHhhcCCCCc----c----------------cCCCCceEeeC-----cEE
Confidence 56788999985 66654 33 56777777766542211 0 01223333332 899
Q ss_pred EEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022552 220 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 286 (295)
Q Consensus 220 eV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~ 286 (295)
||++.||||+|++|+++|. +|.+|+++|.|..+.|.||+.. +.....+...+..+|.
T Consensus 635 e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~------~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 635 EVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP------GFDRATVERDVTRVLA 691 (693)
T ss_pred EEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC------cccHHHHHHHHHHHHh
Confidence 9999999999999999999 8999999999999999999961 1134566666666654
No 33
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.36 E-value=5.3e-12 Score=93.61 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=54.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNL 173 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L 173 (295)
..|.|+++||||||++++++|+.+|+||++|+|+|+.+++ +|+|+|++. +|.. + +.|+..|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-~~~~---~---~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-KRGE---T---AALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-Cccc---h---HHHHHHHHHhh
Confidence 4799999999999999999999999999999999998877 799999986 5642 1 34555555543
No 34
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=1.4e-11 Score=91.96 Aligned_cols=67 Identities=30% Similarity=0.550 Sum_probs=58.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 170 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~ 170 (295)
+.|+|+++||||+|++|+++|+++|+||++|+++|.++...|+|+|++. +|.++ +++++++|++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999987766899999996 77766 6678887777653
No 35
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=1.8e-11 Score=89.68 Aligned_cols=69 Identities=32% Similarity=0.528 Sum_probs=62.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 285 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L 285 (295)
|+|.|.+.||||+|++|+++|+++|++|.++++.|.++.+.|.|++++ .|.+...+.+++|+++|.++|
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999999889999999997 777765558889999998764
No 36
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.31 E-value=3.8e-12 Score=109.15 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=102.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 178 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~ 178 (295)
+++.+|++++.||||+...|++...++||||.++|+...|+.+. +.+.- .|.| +...+|+..|.. +.++ .
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a--~i~li--sgs~----dav~~le~~l~~-l~~~-~ 72 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFA--GIMLI--SGSW----DAVTLLEATLPL-LGAE-L 72 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhccee--EEEEE--eeCH----HHHHHHHHHhhc-cccc-C
Confidence 46789999999999999999999999999999999999999886 44443 4554 667788887765 3321 1
Q ss_pred CchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--Cee
Q 022552 179 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVA 256 (295)
Q Consensus 179 ~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a 256 (295)
+ ..+.|. | ..+++ .......+.++|.+.|||||+.++|+.|..+|+||++....|+- +..
T Consensus 73 ~--L~v~m~---------r-----t~~~~--~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~ 134 (176)
T COG2716 73 D--LLVVMK---------R-----TGAHP--TPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSS 134 (176)
T ss_pred C--eEEEEe---------e-----cCCCc--cCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCC
Confidence 1 111110 0 00000 11123479999999999999999999999999999999999975 346
Q ss_pred eeEEEEE
Q 022552 257 KDKFHVS 263 (295)
Q Consensus 257 ~D~F~V~ 263 (295)
...|++.
T Consensus 135 ~~lfha~ 141 (176)
T COG2716 135 APLFHAQ 141 (176)
T ss_pred ccceehh
Confidence 6678875
No 37
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.29 E-value=3.2e-11 Score=90.07 Aligned_cols=65 Identities=26% Similarity=0.410 Sum_probs=57.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHH
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCL 281 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L 281 (295)
+.|+|.++||||+|++|+.+|+++|+||.+|++.|.++.+.|+|+|.+ +|.++..+++++|++.|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l 67 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI 67 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence 678999999999999999999999999999999999889999999997 78887444666666654
No 38
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.27 E-value=5.4e-11 Score=87.18 Aligned_cols=69 Identities=29% Similarity=0.494 Sum_probs=61.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 172 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~ 172 (295)
|.|.|.++|+||+|++|+++|+++|+||.++++.+.++...|.|++.+. +|.+ .+.+++++|++.|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~-~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQP-LDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999998877899999986 6766 4568999999988764
No 39
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.04 E-value=2.8e-09 Score=77.44 Aligned_cols=69 Identities=32% Similarity=0.498 Sum_probs=60.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 285 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L 285 (295)
+.|.|.+.|+||+|++|+++|+++|++|.++.+.+.++...+.|++.. +|....+++++.|++.|..++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 368899999999999999999999999999999998889999999986 566655557888999987654
No 40
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.00 E-value=5.5e-09 Score=75.90 Aligned_cols=68 Identities=29% Similarity=0.520 Sum_probs=59.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 172 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~ 172 (295)
.|.|.++|+||+|++|+++|+++|++|.++++.+.++...+.|++..+ ++.. .+++++++|++.|.++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRP-LDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence 688999999999999999999999999999999998866799999886 5554 4568899999988764
No 41
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.87 E-value=1.9e-08 Score=74.65 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=52.3
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 285 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L 285 (295)
+.|.|.++|||||+++|+.+|..+|+||..|+|.|. .+.+.|+|+|.+ +|+- -..|.++|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence 578899999999999999999999999999999864 688999999987 5543 134555555554
No 42
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.68 E-value=2.6e-07 Score=69.55 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=53.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 173 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L 173 (295)
..+|+|.|+||||+++.++++|+++|+||.+.+..+.++.+.-.+.|.-+ ++..++|+..|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998766777542 357788888888743
No 43
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.50 E-value=1.8e-06 Score=61.72 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=47.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~--~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+.|.|.++||||+|++++++|+++|+||..+.+.+.++ +....+...+ ....+.+.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence 47899999999999999999999999999999999988 3343344433 2444566666655
No 44
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.48 E-value=3.4e-07 Score=65.54 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=36.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 255 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~ 255 (295)
|.|.|.++||||+|++|+++|+++|+||.++...+.++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~ 39 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG 39 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence 678999999999999999999999999999999998775
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.46 E-value=1.8e-06 Score=64.97 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=52.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 285 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L 285 (295)
+.+|++.|+||||++++|+++|+++|+||...+..+.|++..-.+.++-. +...++|+++|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998888888533 335677777776653
No 46
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.44 E-value=1.5e-06 Score=65.55 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=49.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
++|++.|+||||+.+++++.|+++|+||.+.+.+..++.+.-...+.. .+ ...+.|++.|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~----~~----~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG----SW----DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe----cc----ccHHHHHHHHHH
Confidence 689999999999999999999999999999999998887744444432 11 234667777666
No 47
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.39 E-value=1e-06 Score=63.80 Aligned_cols=67 Identities=13% Similarity=0.318 Sum_probs=57.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 172 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~ 172 (295)
++|+|.|||+.||-+++|+++.+.|++|..+.++|.|.+..-+|+|... . ..+ +-+|..|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~-~-~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR-P-PSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC-C-CCC--cccHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999998778999863 2 222 36889999988764
No 48
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.36 E-value=2.1e-06 Score=64.20 Aligned_cols=64 Identities=9% Similarity=0.030 Sum_probs=51.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 173 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L 173 (295)
+|+|.++||||+.++++++|+++|+||.+.+..+.++.+.-.+.+.-+ .+ ...+.|+..|+...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~------~~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DS------ADSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CC------CCHHHHHHHHHHHH
Confidence 478999999999999999999999999999988888877666777543 22 13467777777643
No 49
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.33 E-value=1.8e-06 Score=64.57 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=40.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
+++|.++||||++++|+++|+++|+||...+-.+.+++-.-.|.+.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~ 46 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQ 46 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEE
Confidence 4789999999999999999999999999999999887755556554
No 50
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.07 E-value=1.5e-05 Score=61.39 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=49.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 172 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~ 172 (295)
.+|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+ + . ....+.|+..|...
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~--~--~~~~~~L~~~l~~l 66 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--E--S--NLDFAELQEELEEL 66 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--C--C--CCCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999987766545555442 1 0 12246777777763
No 51
>PRK00194 hypothetical protein; Validated
Probab=98.01 E-value=4e-05 Score=59.05 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=36.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 255 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~ 255 (295)
.++++|.++||||++++|+++|+++|+||...+-.+.++.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~ 42 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGY 42 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCe
Confidence 5899999999999999999999999999999998887653
No 52
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.01 E-value=4.5e-05 Score=57.24 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=46.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC------CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG------SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~------~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+|+|.|+|+||++++|++.|+++|+||.+.+..+.+ +.+.-.+.+.-+ .+ ...+.|+..|+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~------~~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG------TDLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC------CCHHHHHHHHHH
Confidence 378999999999999999999999999999999987 333333444332 11 124677777776
No 53
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.01 E-value=1.8e-05 Score=58.80 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 137 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~ 137 (295)
+|+|.|+||||++++|++.|+++|+||.+.+..+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~ 35 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD 35 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence 47899999999999999999999999999999874
No 54
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.99 E-value=1.3e-05 Score=59.52 Aligned_cols=44 Identities=16% Similarity=0.407 Sum_probs=37.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
+|+|.|+||||++++|+++|+++|+||...+..+.. ....|++.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~ 44 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMR 44 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEE
Confidence 478999999999999999999999999999998743 22357775
No 55
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.98 E-value=2.4e-05 Score=58.72 Aligned_cols=46 Identities=22% Similarity=0.435 Sum_probs=39.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe--eeeEEEEE
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--AKDKFHVS 263 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~--a~D~F~V~ 263 (295)
+|.|.|+||||++++|+++|+++|+||.+.+..|.+.. ....|.++
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~ 48 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQ 48 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEE
Confidence 37899999999999999999999999999999998732 44567665
No 56
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.96 E-value=5.2e-05 Score=58.35 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=36.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 255 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~ 255 (295)
.++++.|+||||++++|+++|+++|+||...+-.+.+++
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~ 40 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGY 40 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCc
Confidence 579999999999999999999999999999999887654
No 57
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.94 E-value=7.1e-05 Score=56.39 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=35.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 255 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~ 255 (295)
.+|.+.|+||||++++|++.|+++|+||...+-.+.+++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~ 40 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTE 40 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCE
Confidence 678999999999999999999999999999999885553
No 58
>PRK00194 hypothetical protein; Validated
Probab=97.93 E-value=4.7e-05 Score=58.65 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=48.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.++|+|.|+|+||+++++++.|+++|+||.+.+..+.++.+.-.+.+.-+ +.+ ...+.|+..|..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESK----KDFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCC----CCHHHHHHHHHH
Confidence 57899999999999999999999999999999998877655544444332 111 123566666665
No 59
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.90 E-value=5e-05 Score=57.12 Aligned_cols=63 Identities=29% Similarity=0.397 Sum_probs=47.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVNCLR 282 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~ 282 (295)
.+.|.|.+.||||+|++|++++++.|+||.++.+.+. ++.+.-.|.+.=. +-++++.|.+.|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~----d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK----DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES----SHHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC----CHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999985 5666666766311 1236666666654
No 60
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.79 E-value=0.001 Score=54.34 Aligned_cols=111 Identities=20% Similarity=0.335 Sum_probs=78.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchh
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSE 182 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~~~~~ 182 (295)
+|.|...|+||-|+..++.|.+.|+||..-.|.-+++.-+-...|.. ++. -...|+++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~d~---A~~~Lee~---------- 62 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------PDE---AHSVLEEA---------- 62 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------hHH---HHHHHHHC----------
Confidence 68999999999999999999999999998888877773322233322 111 11223220
Q ss_pred HhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEE
Q 022552 183 QLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFH 261 (295)
Q Consensus 183 ~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g~~a~D~F~ 261 (295)
| |. |. ...++-|...|+||=|.+|+.+|.++|+|+.++-.-+. .+.|.-.|.
T Consensus 63 --------g---------F~----Vr------~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r 115 (142)
T COG4747 63 --------G---------FT----VR------ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVR 115 (142)
T ss_pred --------C---------cE----EE------eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEE
Confidence 0 11 11 12578899999999999999999999999999887553 455555555
Q ss_pred E
Q 022552 262 V 262 (295)
Q Consensus 262 V 262 (295)
+
T Consensus 116 ~ 116 (142)
T COG4747 116 V 116 (142)
T ss_pred h
Confidence 5
No 61
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.69 E-value=0.00026 Score=53.21 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=45.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+.+.|.+.||+|+|++|+.++++.|+||.+.++.+.. ++. .-.|.+.- .+.++++.|...|++
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHHCT
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHHHC
Confidence 4789999999999999999999999999999999975 443 33455543 234677776666654
No 62
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.62 E-value=0.00046 Score=50.69 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=44.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
|.|.+.||||+|.+|++++++.|+||.+....+.. +.+.-.|.+.-.+ .++++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~----~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS----EEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC----HHHHHHHHHHHhc
Confidence 68899999999999999999999999999887653 5555556553221 1255566666543
No 63
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.61 E-value=0.00075 Score=49.52 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=46.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+.|.+.|+||+|++|+.++++.|.||.+....+..++. ...|.+.- .+.++++++...|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHhc
Confidence 67899999999999999999999999998887765444 33455543 234677777777765
No 64
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.58 E-value=0.00021 Score=63.25 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=44.9
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
.+.+|++.|+|||||++.|+++|+++|+||...+.+..|+.-.-++.|+
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs 55 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS 55 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence 5799999999999999999999999999999999999999776667773
No 65
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.52 E-value=0.00057 Score=64.17 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=50.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE--cCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552 100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT--EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 172 (295)
Q Consensus 100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T--~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~ 172 (295)
...+|+|.|+||||+.+.|+++|+++|+||.+.+..+ .++.+.-.+.+.- +.. +..++.|+..|++.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~----~~~~~~L~~~L~~l 73 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGL----IFNLETLRADFAAL 73 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCC----CCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999 6664433333332 111 12367788877763
No 66
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.48 E-value=0.00037 Score=65.59 Aligned_cols=66 Identities=11% Similarity=0.067 Sum_probs=46.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~--T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
..+|+|.|+||||+.+.++++|+++|+||.+.+.+ +..+.+.-.+.+.+. ....+ ..+.|+..|.+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~----~~~~l~~~l~~ 76 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAA----SVDTFRQEFQP 76 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC-CCCCC----CHHHHHHHHHH
Confidence 45899999999999999999999999999999997 444444323333321 11111 24566776666
No 67
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.45 E-value=0.00086 Score=62.98 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=39.8
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEEEE
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHVS 263 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T--~g~~a~D~F~V~ 263 (295)
..++|+|.|+|||||+++|+++|+++|+||...+..+ .++ .|.+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~ 51 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMR 51 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEE
Confidence 3589999999999999999999999999999999998 554 47664
No 68
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.41 E-value=0.00021 Score=55.57 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=31.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 250 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~ 250 (295)
..+|+|.+.||||+.+.|+++|+++|+||....=+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQt 37 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQT 37 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH
Confidence 57899999999999999999999999999876533
No 69
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.41 E-value=0.002 Score=48.51 Aligned_cols=66 Identities=12% Similarity=0.289 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC-eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~-~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
+.+.+...|+||-|++|.+.|+++|+||.+......+. ...=.|+|.-+|. ..++..+++.+.|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~-~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH-IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC-CCCHHHHHHHHHHHH
Confidence 56778889999999999999999999999998776543 3445677865664 334444555555554
No 70
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.00073 Score=49.10 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=53.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 284 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~ 284 (295)
++|+|.++|+.||=.||++++.++|++|..+.++|.|.=.-=+|-|......+. -.-..|+++|+.+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~-~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIK-VRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCc-ccHHHHHHHHHhc
Confidence 478999999999999999999999999999999999998888888864333321 1345667776654
No 71
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.36 E-value=0.00094 Score=62.56 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=46.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+|+|.|+||||+.+.+++.|+++|+||.+.+.+... +.+.-.+.+..+ +..+ ..+.|+..|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHH
Confidence 689999999999999999999999999999999864 555444444432 2111 24566666666
No 72
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.35 E-value=0.0007 Score=50.27 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=32.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 252 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~ 252 (295)
.|+|.+.||+|+|++|+.++++.|+||.+.++.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999999875
No 73
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.33 E-value=0.0007 Score=63.57 Aligned_cols=46 Identities=9% Similarity=0.211 Sum_probs=39.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
.++++|.|+||||++++||++|+++|+||....-.|.. ..+.|.+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~--~~~~F~m~ 52 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR--LSGRFFMR 52 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC--CCCeEEEE
Confidence 58899999999999999999999999999999887543 55567664
No 74
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.002 Score=46.13 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=30.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 252 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~ 252 (295)
+.|..+|+||+|++|+++|++.|++|.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3578899999999999999999999998887653
No 75
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.25 E-value=0.0033 Score=44.91 Aligned_cols=61 Identities=11% Similarity=0.242 Sum_probs=42.1
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC----CeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG----SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~----~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+.|.++|+||+|++|+.+|+++|+||.+....... .+. .-.|.+.- .+.+.++.+...|++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 35788999999999999999999999988776543 233 22233322 123566666666654
No 76
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.24 E-value=0.0018 Score=47.02 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=44.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
+.|.|.+.|+||+|.+|+++|+++|++|.+....+.. +.+.=.|.+ + ..+..+++.+.+.|++
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~-~---~~~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT-H---ETSEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE-c---cCCHHHHHHHHHHHHc
Confidence 3578899999999999999999999999999876543 333332333 2 2234466666666653
No 77
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.23 E-value=0.00065 Score=63.91 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=37.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
.++|+|.|+|||||++.|+++|+++|+||..+.-.+ +...+.|+++
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~--d~~~~~ffm~ 54 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFD--DDESGRFFMR 54 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEeccccc--ccccCcEEEE
Confidence 579999999999999999999999999999988763 3333445543
No 78
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.21 E-value=0.00055 Score=53.26 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=47.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 172 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~ 172 (295)
..+|+|.++||||+.+.++++|+++|+||.+-...-..+.+.-.+.|..+ .. ......+++.|...
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~ 68 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAE 68 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHH
Confidence 46899999999999999999999999999987776666666444555432 11 12335566666553
No 79
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.21 E-value=0.0012 Score=46.02 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=38.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEE
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVS 263 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~ 263 (295)
+.|...|+||.|.+|+..|.++|+||.+..+...+ +.+.-.|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 45788999999999999999999999999987655 6666666663
No 80
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.18 E-value=0.003 Score=44.82 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=37.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEE
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV 262 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V 262 (295)
+.|.+.|+||+|.+|+++|+++|++|.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67889999999999999999999999999997764 455555555
No 81
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0018 Score=46.89 Aligned_cols=45 Identities=13% Similarity=0.335 Sum_probs=37.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
..+.|...|+||.|++|+.+|.++|+||.+.-+...++. .++.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 467889999999999999999999999999998766553 555553
No 82
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0039 Score=45.15 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=36.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-C-eeeeEEEE
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-L-VAKDKFHV 262 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~-~a~D~F~V 262 (295)
+.+.|..+|+||.|.+|+++|+++|++|.+....... + ...-.|.+
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v 49 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISF 49 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEE
Confidence 5688899999999999999999999999988776652 2 33334555
No 83
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.16 E-value=0.0024 Score=59.95 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=46.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 172 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~--~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~ 172 (295)
..+|+|.|+||||+.+.++++|+++|+||.+.+..+... .+.-.+.+..+ .+ ...+.|+..|.+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~------~~~~~L~~~L~~l 73 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EG------LDEDALRAGFAPI 73 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CC------CCHHHHHHHHHHH
Confidence 468999999999999999999999999999999985432 33333444332 22 1246677777663
No 84
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.14 E-value=0.0049 Score=43.88 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=43.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-C-CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-G-LVAKDKFHVSYGGAALNSSLSQVLVNCLR 282 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~ 282 (295)
.+.+.+.|+||+|.+|+++|+++|++|.+....+. + +.+.=.|.+ + . + + +.++.+.+.|+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~-~-~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-E-G-D-D-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-E-C-C-H-HHHHHHHHHHh
Confidence 47889999999999999999999999999998775 3 333333334 2 2 1 2 44556666554
No 85
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.14 E-value=0.0023 Score=59.98 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=37.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
+|+|.|+|||||++.|+++|+++|+||....-.+. ...+.|+++
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~--~~~~~F~mr 45 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD--PETGRFFMR 45 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc--CCCCeEEEE
Confidence 68999999999999999999999999999887665 334567664
No 86
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.11 E-value=0.0032 Score=46.72 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=43.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.+.|.+.||+|++++|+.++++.|+||.+..+.+. +.. .|.+.- .+.++++.+...|++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i--~l~i~v-------~~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRI--YLNFPT-------IEFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeE--EEEeEe-------cCHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999775 331 133321 234666776666655
No 87
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.98 E-value=0.0051 Score=52.89 Aligned_cols=66 Identities=12% Similarity=0.262 Sum_probs=46.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 285 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L 285 (295)
++|.|...|+||.|.+|+.+|+++|+||.+..+...++...-.+.+.=+| ++...++|...|.+.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcCc
Confidence 57899999999999999999999999999998876543322223332234 2445666666665543
No 88
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0036 Score=45.97 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=44.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLR 282 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~ 282 (295)
.+.|.+.||||+|++|+++|++.|++|......+.. +.+.=.|.+.-.+. +.+++.|.+.|+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~---~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM---NGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch---HHHHHHHHHHHh
Confidence 478999999999999999999999999999876543 44445555532221 124556666654
No 89
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.0021 Score=59.45 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=36.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552 100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 138 (295)
Q Consensus 100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~ 138 (295)
...++++.|+|++|+.+.|++.|+++|+||.++..++..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~ 44 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDP 44 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccccc
Confidence 457999999999999999999999999999999999654
No 90
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.95 E-value=0.0043 Score=43.93 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=31.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 253 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g 253 (295)
++.|..+|+||-|.+++.+|+++|+||.+......+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367889999999999999999999999988875544
No 91
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.94 E-value=0.0027 Score=55.52 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=33.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 251 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T 251 (295)
+.+.|.+.|+||+|++|+.+|+.+|+||.+..+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 57899999999999999999999999999999965
No 92
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.93 E-value=0.0082 Score=43.52 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=43.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.+.|.+.|++|++++++++|+++|+||......+..+ +......++.. .+.+.++.+...|++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHHc
Confidence 4788999999999999999999999999988765543 43322333321 133555555555543
No 93
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.92 E-value=0.005 Score=44.65 Aligned_cols=44 Identities=20% Similarity=0.459 Sum_probs=34.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEE
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHV 262 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V 262 (295)
+-+...|+||.+++|+++|+++|+||.+...... ++.+.=+|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 4568999999999999999999999999887553 3445444444
No 94
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.89 E-value=0.01 Score=43.47 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=44.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChH-HHHHHHHHHHH
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPD-LLERIRLTIIN 171 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~-~le~L~~~L~~ 171 (295)
.+.|.+.|+||++++|+++|+++|+||......+..++. .-.|.+... +.+ .+++|...|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence 478999999999999999999999999998775544333 333555431 223 66777766665
No 95
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.89 E-value=0.014 Score=45.50 Aligned_cols=71 Identities=11% Similarity=0.244 Sum_probs=53.9
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 287 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~ 287 (295)
..+.|-+...|+||-|+++-..|+++|||+.+.+....... -+=.|||.-+|. .++..+++.+.|.+.|.-
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~--~~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK--SAPALDPIIKSLRNDIGA 84 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC--CCHHHHHHHHHHHHHhCC
Confidence 45777788899999999999999999999999998765544 344688865675 245555666777766654
No 96
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.88 E-value=0.0077 Score=45.65 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=32.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID 250 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~ 250 (295)
+.|.+...|+||.|.+|+.+|+.+|+||.+..+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg 36 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLN 36 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence 5789999999999999999999999999999986
No 97
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.87 E-value=0.008 Score=42.73 Aligned_cols=33 Identities=18% Similarity=0.521 Sum_probs=30.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 251 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T 251 (295)
|.+.+.|+||.|.+|+++|+++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 578899999999999999999999999998765
No 98
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.83 E-value=0.0051 Score=42.82 Aligned_cols=45 Identities=9% Similarity=0.269 Sum_probs=36.7
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeEEEEEEEe
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFIT 148 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~~D~F~V~ 148 (295)
+.|..+|+||.+++++.+|.++|+||....+...+ +...-.|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 46789999999999999999999999999988876 3344445553
No 99
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.80 E-value=0.015 Score=41.29 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=43.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc-CCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~-~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.+.+.+.|++|++.+++.+|+++|+||......+. +++.....+.... .+ ..++.+...|+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG------DD-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC------CH-HHHHHHHHHHhC
Confidence 46788999999999999999999999999988776 4444333333221 12 455555555554
No 100
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.77 E-value=0.011 Score=46.73 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=45.6
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 284 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~ 284 (295)
...+|.+...|+||+|.+|+-.|+.+|+||.+..+.-.+....-.+.+.-.+ +...+++...|.+.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~----~~~i~Qi~kQL~KL 72 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND----DQRLEQMISQIEKL 72 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC----chHHHHHHHHHhCC
Confidence 4678999999999999999999999999999999864443322223322122 23455555555443
No 101
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.73 E-value=0.011 Score=51.03 Aligned_cols=63 Identities=13% Similarity=0.260 Sum_probs=44.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 284 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~ 284 (295)
++|.|...|+||.|++|+..|+++|+||.+..+.... +...=+|.+ +| ++...+++...|.+.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V--~~---~~~~i~qi~kQl~KL 67 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT--SG---DEQVIEQITKQLNKL 67 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE--EC---CHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999886543 223333333 33 233455555555443
No 102
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.72 E-value=0.0023 Score=48.13 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=51.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEE--EEeCCCCCChH-HHHHHHHHHHHHc
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFH--VSYGGAALNSS-LSQVLVNCLRYYL 285 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T--~g~~a~D~F~--V~~~G~~l~~~-~~~~L~~~L~~~L 285 (295)
+|+.+.-||-.+||+|-+|+.+|+.|.+|+|.- .+++...+|. +.+.++.++.. ..+++.+.+.+.|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999964 4566666644 44445556655 6777777776654
No 103
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.72 E-value=0.012 Score=44.63 Aligned_cols=63 Identities=8% Similarity=0.055 Sum_probs=45.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
..+.+...|+||.|++++++|+..|+||.+-.+.-+.+ +.. .+.++- .| +++.+++|.+.|..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~s-riti~~--~~----~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVS-EMKLTA--VC----TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCee-EEEEEE--EC----CHHHHHHHHHHHhC
Confidence 36899999999999999999999999999988875544 332 233332 12 23566777777665
No 104
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.71 E-value=0.012 Score=46.53 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=48.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.+...+.+...|+||.|++|++.|+..|+||.+-.+..+.+.-+-.+.+.- .+ ++.+++|.+.|..
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv--~~-----~~~i~Qi~kQL~K 71 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV--ND-----DQRLEQMISQIEK 71 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE--cC-----chHHHHHHHHHhC
Confidence 344579999999999999999999999999999988777653322233332 11 2566777777665
No 105
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.70 E-value=0.01 Score=45.84 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=47.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
..+.+...|+||.|+++++.|+..|+||.+-.+..+.+.-+-.+.+.-. .| ++..+++|...|.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~~----d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-IQ----DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-CC----CHHHHHHHHHHHhC
Confidence 3689999999999999999999999999999997776532222333221 13 34666777777665
No 106
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.0063 Score=44.00 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=35.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV 140 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~ 140 (295)
..+.|..+|+||.|++++.+|.++|+||.+..++..++.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 368899999999999999999999999999998777663
No 107
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.61 E-value=0.015 Score=41.51 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 252 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~ 252 (295)
.+.+.+.|+||.|++|++.|.++|++|.+....+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47788999999999999999999999999888765
No 108
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.58 E-value=0.024 Score=40.90 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=33.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 138 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~ 138 (295)
..+.|..+|+||.|+++++.|+++|+||.........
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~ 38 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIR 38 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEee
Confidence 3678899999999999999999999999988877763
No 109
>PRK08577 hypothetical protein; Provisional
Probab=96.55 E-value=0.031 Score=46.54 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=40.0
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEE
Q 022552 214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV 262 (295)
Q Consensus 214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V 262 (295)
...+.|.|.+.|+||+|++|+++|+++|++|.+....+.. +.+.-.|.+
T Consensus 54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v 104 (136)
T PRK08577 54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV 104 (136)
T ss_pred ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE
Confidence 3489999999999999999999999999999999887754 334444444
No 110
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.55 E-value=0.0031 Score=45.38 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=34.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 262 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V 262 (295)
+.+.+.|+||+|.+|+..|++.|+||.+....+.++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999888766555444444444
No 111
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.011 Score=54.85 Aligned_cols=63 Identities=16% Similarity=0.334 Sum_probs=47.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe----CCCCCChH-HHHHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY----GGAALNSS-LSQVLVN 279 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~----~G~~l~~~-~~~~L~~ 279 (295)
+.+++.+.|+|+|||++.|+..|+++|+||....=. ++.....|+++- .+.++..+ .++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence 468999999999999999999999999999887655 456667788862 34444444 3334333
No 112
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.54 E-value=0.029 Score=41.46 Aligned_cols=64 Identities=17% Similarity=0.314 Sum_probs=45.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
|-+...|+||-|++|...|+++|+||.+.+..... ....=.|||.-.|.. .+...+.+.+.|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHI-DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHHHHH
Confidence 34556899999999999999999999999776543 456667888656642 23344555555554
No 113
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.52 E-value=0.017 Score=44.52 Aligned_cols=65 Identities=11% Similarity=0.189 Sum_probs=44.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE-eCCCCCChHHHHHHHHHHHHH
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS-YGGAALNSSLSQVLVNCLRYY 284 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~-~~G~~l~~~~~~~L~~~L~~~ 284 (295)
.+|.+...|+||.|.+|+..|+.+|+||.+..+........-.+-+. ..|. +...+++...|.+.
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL~Kl 68 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHHhCC
Confidence 46888899999999999999999999999999975433332223332 2232 23455666555543
No 114
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.52 E-value=0.02 Score=37.29 Aligned_cols=35 Identities=34% Similarity=0.718 Sum_probs=31.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 253 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g 253 (295)
|.+.+.|+||++.+|..+|.++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46789999999999999999999999999987654
No 115
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.46 E-value=0.028 Score=48.33 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=47.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.+.|...|+||.|++++++|++.|+||.+-.+.... ++.. -+|.+. + ++..+++|.+.|..
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~----d~~~i~qi~kQl~K 65 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----G----DDKVLEQITKQLNK 65 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhc
Confidence 688999999999999999999999999999988776 3443 334442 2 23567777777765
No 116
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.45 E-value=0.018 Score=50.42 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=47.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 173 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L 173 (295)
..+.|.+.|+||++++++++|+..|+||.+-.+..+.+.-.-.+.+.-+ +. ...+++|++.|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~----~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GD----DRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CC----HHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999997644422212333332 21 233677777777643
No 117
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.44 E-value=0.029 Score=39.97 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=33.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK 141 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~ 141 (295)
.+.+.++|++|.+++++..|+++|+||.+.......++.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~ 40 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGK 40 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCe
Confidence 578899999999999999999999999988877654333
No 118
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.41 E-value=0.033 Score=48.15 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=47.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
..+.|...|+||.|++|+++|++.|+||.+-.+.... ++.. -++.+. | +++.++++...|..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~----~----~~~~i~qi~kQl~K 66 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS----G----DEQVIEQITKQLNK 66 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhc
Confidence 4688999999999999999999999999999887775 3443 234332 2 23667788777766
No 119
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.40 E-value=0.021 Score=41.79 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=30.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 137 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~ 137 (295)
+.|..+|+||-|++++.+|+++|.||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999998876665
No 120
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.39 E-value=0.027 Score=42.65 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=37.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEEE
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHV 262 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T--~g~~a~D~F~V 262 (295)
+.|.+...|+||.|.+|+..|+.+|+||.+..+.- .++...=++.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v 51 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV 51 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence 67899999999999999999999999999999965 23434444555
No 121
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.33 E-value=0.026 Score=41.99 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=44.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
.|-+...|+||-|++|-..|+.+|||+.+.+....... -+=.|||.-+| .++..+++.+.|..
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~---~~~~~~~~l~~L~~ 65 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV---DRGDLDQLISSLRR 65 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc---ChHHHHHHHHHHHH
Confidence 34556689999999999999999999999998765544 45568886567 23334444444443
No 122
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.33 E-value=0.034 Score=40.28 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=31.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 251 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T 251 (295)
+.+.+..+|+||.|.+|+++|.++|+||.+....-
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~ 36 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYP 36 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEec
Confidence 46788999999999999999999999999887543
No 123
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.30 E-value=0.043 Score=37.63 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=32.5
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV 140 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~ 140 (295)
+.|.+.|+||.+..++..|.++|++|....+...+++
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~ 37 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDG 37 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCC
Confidence 4678999999999999999999999999988776533
No 124
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.30 E-value=0.06 Score=40.34 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=38.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEee
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR 149 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~ 149 (295)
+.+.+..+|+||.|+++.++|+++|+||.+-.....++. ..-.|+|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 356677899999999999999999999998877766542 334577766
No 125
>PRK08577 hypothetical protein; Provisional
Probab=96.30 E-value=0.079 Score=44.06 Aligned_cols=76 Identities=13% Similarity=0.157 Sum_probs=51.2
Q ss_pred EEEEeecC--CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552 90 HVLIDQDS--NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFITRLDTGRKVEDPDLLERI 165 (295)
Q Consensus 90 ~V~i~~~~--~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~-~D~F~V~~~~~g~~~~d~~~le~L 165 (295)
.|.+..-. ....+.+.|.+.|+||+|++++++|+++|+||.+....+.. ++. .-.|.+.-. +. +..++.+
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~--~~----~~~l~~l 116 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS--KS----DIDLEEL 116 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC--Cc----hhhHHHH
Confidence 44444433 34477899999999999999999999999999998887765 333 233434321 11 1345666
Q ss_pred HHHHHH
Q 022552 166 RLTIIN 171 (295)
Q Consensus 166 ~~~L~~ 171 (295)
...|.+
T Consensus 117 ~~~L~~ 122 (136)
T PRK08577 117 EEELKK 122 (136)
T ss_pred HHHHHc
Confidence 666554
No 126
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.25 E-value=0.019 Score=40.51 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=36.5
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeE-EEEEEE
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFI 147 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~-~D~F~V 147 (295)
+.|.+.|++|++++++++|+++|+||.+..+.... ++. .-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999988765 333 344555
No 127
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.25 E-value=0.023 Score=41.59 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=30.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 252 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~ 252 (295)
+.|..+|+||-|.+++.+|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5778999999999999999999999998876654
No 128
>PRK04435 hypothetical protein; Provisional
Probab=96.23 E-value=0.052 Score=46.02 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=53.0
Q ss_pred EEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHH
Q 022552 91 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTI 169 (295)
Q Consensus 91 V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L 169 (295)
.-+..........+.+...|+||+|++|+++|+++|+||..-......++. .-.|.+... + . ...++.|...|
T Consensus 59 f~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~--~--~~~L~~Li~~L 132 (147)
T PRK04435 59 FPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--S--M--EGDIDELLEKL 132 (147)
T ss_pred ECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--C--h--HHHHHHHHHHH
Confidence 344445566777899999999999999999999999999988876555554 334555432 1 1 13566666666
Q ss_pred HH
Q 022552 170 IN 171 (295)
Q Consensus 170 ~~ 171 (295)
++
T Consensus 133 ~~ 134 (147)
T PRK04435 133 RN 134 (147)
T ss_pred Hc
Confidence 54
No 129
>PRK07334 threonine dehydratase; Provisional
Probab=96.03 E-value=0.032 Score=54.62 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-----GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-----g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
.+.|+|.+.||||+|.+|+++|++.++||.+....+. ++.+.-.|.+.=. +.++++.|.+.|+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~----d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR----DAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999998764 3333333444111 12366777777764
No 130
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.01 E-value=0.031 Score=38.34 Aligned_cols=35 Identities=34% Similarity=0.664 Sum_probs=32.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 253 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g 253 (295)
|.|.+.|+||++.+|+..|.+++++|.+..+...+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 46789999999999999999999999999998766
No 131
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.99 E-value=0.087 Score=34.08 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=31.7
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 138 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~ 138 (295)
|.+.++|++|++.+++++|.++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987654
No 132
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.90 E-value=0.06 Score=40.77 Aligned_cols=61 Identities=7% Similarity=0.124 Sum_probs=45.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
..+.+...|+||.|++++++|...|+||.+-.+..+.+. .. -++.+. + +..++.|.+.|..
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~------~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---S------ERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---C------CchHHHHHHHHhc
Confidence 478999999999999999999999999999999886543 22 233342 1 2445677776655
No 133
>PRK07334 threonine dehydratase; Provisional
Probab=95.84 E-value=0.062 Score=52.64 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=48.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc----CCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~----~~~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+.|.|.+.||+|+|++|+.+|++.++||.+....+. .++.. -.|.|.- .+.+++++|...|++
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998765 34442 2343432 234777888887776
No 134
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.81 E-value=0.051 Score=39.20 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=34.5
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc-C-CeEEEEEEE
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-G-SVKQTKFFI 147 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~-~-~~~~D~F~V 147 (295)
+.+..+|+||.++++++.|+++|+||.+...... . +...-.|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 4678999999999999999999999998887664 2 333434444
No 135
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.81 E-value=0.093 Score=37.06 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=30.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 137 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~ 137 (295)
+.+.+.|+||.+++++..|+++|+||........
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~ 35 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRK 35 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEec
Confidence 5788999999999999999999999998887763
No 136
>PRK04435 hypothetical protein; Provisional
Probab=95.67 E-value=0.13 Score=43.70 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=47.5
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552 214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLR 282 (295)
Q Consensus 214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~ 282 (295)
.....|.+...|+||+|++|.++|+++|+||......+. ++.+.=.|.+.-.+. +..+++|.+.|+
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~---~~~L~~Li~~L~ 133 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM---EGDIDELLEKLR 133 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh---HHHHHHHHHHHH
Confidence 358999999999999999999999999999998876553 344555566633211 124555656554
No 137
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.67 E-value=0.033 Score=39.29 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=31.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 138 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~ 138 (295)
++.|..+|+||-+++++++|+++|+||.+...+...
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367889999999999999999999999988775554
No 138
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=95.63 E-value=0.054 Score=56.79 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=56.2
Q ss_pred EEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHc
Q 022552 217 SLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYL 285 (295)
Q Consensus 217 t~IeV~a-~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~~L 285 (295)
..++|.. +|+||+|.+++-+|+.++.+|++|++.+ ++.+...|.|.. .|.+-... ..|.++..+.--+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSEL 617 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCC
Confidence 6777888 9999999999999999999999999999 888889999987 67775554 5566666654433
No 139
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.63 E-value=0.071 Score=40.01 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=44.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
|-+..+|+||-|+++-..|+.+|+|+.+.+....... .+=.|||.-+|.. + ..+++.+.|.+
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~--~-~i~~~l~~l~~ 65 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ--R-RLDELVQLLKR 65 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH--H-HHHHHHHHHHH
Confidence 4455689999999999999999999999998765444 4556888656664 2 33444444443
No 140
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.56 E-value=0.084 Score=38.39 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=41.3
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+.|..+||||-|.+++.+|+. |.||..-+-...+.+...++..... .+++..+.|.+.|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 357889999999999999999 9999987654443333333333331 124666777777665
No 141
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.43 E-value=0.094 Score=46.95 Aligned_cols=58 Identities=14% Similarity=0.367 Sum_probs=43.5
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQ 275 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V~~~G~~l~~~~~~ 275 (295)
..+.|-+.-.||||.+..|+.+|.++||||..+++... |+.|.=+..+ .++++++.++
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v---D~~v~~~vl~ 206 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI---DKNIDDHIKD 206 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe---CCCCCHHHHh
Confidence 45778888899999999999999999999999999865 4554444334 3444455433
No 142
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.33 E-value=0.98 Score=43.98 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=66.9
Q ss_pred CCeEEEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 99 SDATIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 99 ~~~t~V~V~---~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
++...|+|. ..+++|.++++...|.+.|+||..-.... .+.- -.|.|.. +..+++.+.|.+.+..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~~~-Is~~V~~----------~d~~~a~~~L~~~~~~ 325 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SETS-ISLTVDE----------TDADEAVRALKDQSGA 325 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CCce-EEEEEeH----------HHHHHHHHHHHHHHHh
Confidence 345577777 57889999999999999999997443211 1211 1244422 2233333344332211
Q ss_pred cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 022552 176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA 247 (295)
Q Consensus 176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A 247 (295)
. . ...|.++ .+...|.|.+. ++||+++++.++|.+.|+||...
T Consensus 326 --~-----------------------~-~~~i~~~---~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 326 --A-----------------------G-LDRVEVE---EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred --c-----------------------C-CceEEEe---CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 0 0 0012211 24577777765 79999999999999999999853
No 143
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.19 E-value=0.06 Score=39.06 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=25.1
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552 225 DRPGLLVEIMKIIADVNVDVESAEIDT 251 (295)
Q Consensus 225 DRPGLL~dIt~~L~~~gI~I~~A~I~T 251 (295)
|+||.|.+|+.+|...|+||.+..+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~ 27 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGP 27 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeee
Confidence 789999999999999999999999987
No 144
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.18 E-value=0.1 Score=37.75 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 022552 102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 137 (295)
Q Consensus 102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~ 137 (295)
+.+.+..+|+||.+..++++|.++|+||.+....-.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~ 37 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS 37 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence 578899999999999999999999999998866544
No 145
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.09 E-value=0.078 Score=38.44 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=37.5
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 110 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 110 DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
|+||.|.+|+++|...|+||.+-.+....+.-.-.+.++- +|. ++.++.|...|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v--~~~----~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV--SGD----DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE--ES-----CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE--eeC----chhHHHHHHHHhc
Confidence 7899999999999999999999999885443222233333 232 1455667776665
No 146
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.05 E-value=0.017 Score=41.47 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=30.4
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 138 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~ 138 (295)
+.+.+.|+||++++++.+|++.|+||......+.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~ 36 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG 36 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC
Confidence 67799999999999999999999999887665444
No 147
>PRK06635 aspartate kinase; Reviewed
Probab=95.00 E-value=0.5 Score=46.11 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=66.5
Q ss_pred eEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022552 101 ATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 178 (295)
Q Consensus 101 ~t~V~V~-~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~ 178 (295)
...|+|. ..+++|.++++..+|.+.|+||..-......++.. -.|.|.. +..++....|.+ +.. +.
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~-~~ 329 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKD-EI 329 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHH-Hc
Confidence 3444444 57889999999999999999999654433332122 2344422 222333333333 110 00
Q ss_pred CchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022552 179 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE 248 (295)
Q Consensus 179 ~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~ 248 (295)
+ ...|.+.+ +..++.|.+ .|+||.+++|.++|++.|++|....
T Consensus 330 ------------~------------~~~i~~~~---~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 330 ------------G------------AESVTYDD---DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ------------C------------cceEEEcC---CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 0 00122222 447777765 6999999999999999999998853
No 148
>PRK11899 prephenate dehydratase; Provisional
Probab=94.92 E-value=0.21 Score=46.85 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=43.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCC
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAA 268 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~ 268 (295)
.|.|-+...|+||.|+++-..|+++|||+.+.+..-.+.+ -+=.|||.-+|..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC
Confidence 5778788899999999999999999999999999866544 5557888547754
No 149
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=94.77 E-value=0.02 Score=49.79 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=45.1
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
++.+|.+.+.||||++..|++...++|+|+...+++..|+...-+..++
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis 52 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS 52 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe
Confidence 4689999999999999999999999999999999999999888777774
No 150
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.71 E-value=0.13 Score=54.31 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=47.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChH-HHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSS-LSQVLVNCLR 282 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V~~~G~~l~~~-~~~~L~~~L~ 282 (295)
...|.|.+.||+|||.+|++++++.++||.++.+.+.. +.+.-.|.|. +.+- ++..|.+.|+
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L~ 730 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKLN 730 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 57899999999999999999999999999999998753 4555555552 2222 5566666655
No 151
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.67 E-value=0.46 Score=34.87 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=42.1
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+.+..+|+||-|+++..+|+++|+||.+-.-..... ...-.|+|.- +|.. ++...+.+...|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~~--~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGHI--DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECCC--CCHHHHHHHHHHHH
Confidence 345568999999999999999999999886555443 2233466766 3531 12444444444443
No 152
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.60 E-value=0.32 Score=51.25 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=53.6
Q ss_pred EEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552 90 HVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 165 (295)
Q Consensus 90 ~V~i~~~~~---~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L 165 (295)
.|.+.++.. .-.+.|.|.+.||+|+|++|+.+|+..++||.+.++.+..++. .-.|.|.- .+.+.+++|
T Consensus 612 ~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i 684 (702)
T PRK11092 612 FMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANI 684 (702)
T ss_pred eEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHH
Confidence 454554432 2234789999999999999999999999999999987776544 33344432 234677777
Q ss_pred HHHHHH
Q 022552 166 RLTIIN 171 (295)
Q Consensus 166 ~~~L~~ 171 (295)
...|+.
T Consensus 685 ~~~Lr~ 690 (702)
T PRK11092 685 MRKIRV 690 (702)
T ss_pred HHHHhC
Confidence 777765
No 153
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.52 E-value=0.23 Score=52.58 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=53.4
Q ss_pred EEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeE-EEEEEEeecCCCCCCCChHHHHH
Q 022552 90 HVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFITRLDTGRKVEDPDLLER 164 (295)
Q Consensus 90 ~V~i~~~~~---~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~-~D~F~V~~~~~g~~~~d~~~le~ 164 (295)
.|.+.+... .-...|.|.+.||+|||++|+.+|++.++||...++.+.. ++. .-.|.|.- .+.+.+.+
T Consensus 652 ~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~ 724 (743)
T PRK10872 652 IVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGR 724 (743)
T ss_pred EEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHH
Confidence 444554432 1234789999999999999999999999999999997764 444 33344432 23467787
Q ss_pred HHHHHHH
Q 022552 165 IRLTIIN 171 (295)
Q Consensus 165 L~~~L~~ 171 (295)
|...|++
T Consensus 725 l~~~L~~ 731 (743)
T PRK10872 725 VLGKLNQ 731 (743)
T ss_pred HHHHHhc
Confidence 7777765
No 154
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.52 E-value=0.23 Score=52.30 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=46.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChH-HHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSS-LSQVLVNCLR 282 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~-~~~~L~~~L~ 282 (295)
...|.|.+.||+|+|.+|++++++.++||.++.+.+.. ..+.-.|.+. +.+- ++..|.+.|+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie-----V~~~~~L~~i~~~Lr 689 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT-----ARDRVHLANIMRKIR 689 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 67899999999999999999999999999999988765 3444445442 1122 5556666554
No 155
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.44 E-value=0.65 Score=36.18 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=47.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 173 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L 173 (295)
.+.+.+.+..+|+||-|+++...|+.+|+|+.+-.-...+.. ..-.|+|.. +|. . + ..++.+-..|.+.+
T Consensus 12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~-~-~-~~~~~~l~~L~~~~ 82 (90)
T cd04931 12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK-S-A-PALDPIIKSLRNDI 82 (90)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-C-C-HHHHHHHHHHHHHh
Confidence 344667777799999999999999999999987666555432 234588876 454 1 2 34444444444434
No 156
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.32 E-value=0.27 Score=51.67 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=46.1
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChH-HHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSS-LSQVLVNCLR 282 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~-~~~~L~~~L~ 282 (295)
.+.|.|.+.||+|+|.+|++++++.++||.++.+.+.. +.+.-.|.|. +.+- ++..|...|+
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie-----V~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE-----IKNYKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 67899999999999999999999999999999998764 3333334441 2222 5566666654
No 157
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.11 E-value=0.28 Score=40.00 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=42.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeee-eEEEEEeCCCC
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAA 268 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~-D~F~V~~~G~~ 268 (295)
.+.|-+...|+||-|++|-..|+.+|||+.+.+....+.... =.|||.-+|..
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH
Confidence 577777779999999999999999999999999887655543 45777546654
No 158
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.07 E-value=0.39 Score=50.46 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=48.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.+.|.|.+.||+|+|++|+.+|+.++.||.+.++.+..++.. -.|.|.- .+.+.+.+|...|+.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 347899999999999999999999999999999987754542 2344432 234677777776654
No 159
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=94.01 E-value=0.33 Score=50.87 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=54.9
Q ss_pred cEEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEE-EEEeecCCCCCCCChHHHHH
Q 022552 89 PHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK-FFITRLDTGRKVEDPDLLER 164 (295)
Q Consensus 89 p~V~i~~~~~---~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~-F~V~~~~~g~~~~d~~~le~ 164 (295)
..|.+.++.+ .-.+.|.|.+.||+|+|.+|+.+|+..+.||.+....+..+++..+ |.+. +.+...+.+
T Consensus 612 r~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-------v~n~~~L~~ 684 (701)
T COG0317 612 RVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-------VKNLNHLGR 684 (701)
T ss_pred eEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-------ECcHHHHHH
Confidence 4556665554 3445799999999999999999999999999999998875554322 3332 223467777
Q ss_pred HHHHHHH
Q 022552 165 IRLTIIN 171 (295)
Q Consensus 165 L~~~L~~ 171 (295)
|...|.+
T Consensus 685 i~~~l~~ 691 (701)
T COG0317 685 VLARLKQ 691 (701)
T ss_pred HHHHHhc
Confidence 7777665
No 160
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.81 E-value=0.14 Score=50.55 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=48.6
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV 278 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~ 278 (295)
..+.|-+.-.|+||.+..|+.+|+++|+||...+..+.|+.|.-+|-+ ++ .+.++.+++|+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~--D~-~~~~~~~~~i~ 397 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV--DA-DYAEEALDALK 397 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe--CC-CCcHHHHHHHH
Confidence 467788899999999999999999999999999999999777766655 44 44444444444
No 161
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.79 E-value=0.33 Score=45.55 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=45.1
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCC
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAAL 269 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l 269 (295)
..|.|-+..+|+||-|+++-..|+.+|||+.+.+..-.+.. .+=.|||.-.|..-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~ 248 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHID 248 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcC
Confidence 37889999999999999999999999999999999755544 55568885466653
No 162
>PRK06291 aspartate kinase; Provisional
Probab=93.46 E-value=2.6 Score=42.17 Aligned_cols=110 Identities=12% Similarity=0.183 Sum_probs=68.8
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
.+...|+|.+. +.+|+++++...|+++|+||..-...+....+ .|.|.. +..++....|.+.+.+
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~----------~d~~~av~~L~~~~~~ 386 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDE----------ADLEKALKALRREFGE 386 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeH----------HHHHHHHHHHHHHHHH
Confidence 34567777754 78999999999999999999865433322222 244432 2223333334333321
Q ss_pred cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 022552 176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEI 249 (295)
Q Consensus 176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I 249 (295)
... ..|.+.+ +..+|.|.+. ++||++.++..+|.+.||+|....-
T Consensus 387 ~~~--------------------------~~i~~~~---~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq 434 (465)
T PRK06291 387 GLV--------------------------RDVTFDK---DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ 434 (465)
T ss_pred hcC--------------------------cceEEeC---CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence 000 0122222 4577777775 7999999999999999999985543
No 163
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=93.38 E-value=0.36 Score=35.00 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=33.3
Q ss_pred ceEEEEEEeC----CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552 215 KRSLLYIETA----DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 262 (295)
Q Consensus 215 ~~t~IeV~a~----DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V 262 (295)
+...|.|.+. |.||++++|+..|++.||+|.... | .-.+.|.|
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV 51 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILV 51 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEE
Confidence 4567778777 899999999999999999998776 3 23455666
No 164
>PRK08210 aspartate kinase I; Reviewed
Probab=93.32 E-value=4.9 Score=39.25 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=64.0
Q ss_pred CCeEEEEEEeCCC-ccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccC
Q 022552 99 SDATIVQLSFGDR-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH 177 (295)
Q Consensus 99 ~~~t~V~V~~~Dr-pGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~ 177 (295)
.+...|+|...+. +|.+++|...|.+.|+||..-..+ .+.. .|.+.. +..+++...|.+ +.
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~~i--s~~v~~----------~~~~~a~~~l~~-~~--- 330 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PTEV--VFTVSD----------EDSEKAKEILEN-LG--- 330 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--CceE--EEEEcH----------HHHHHHHHHHHH-hC---
Confidence 3455677776554 999999999999999999976443 2221 244422 222333333322 10
Q ss_pred CCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 022552 178 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVES 246 (295)
Q Consensus 178 ~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~ 246 (295)
. .+.+. .+...|.|.+. ++||++.++.++|.+.|++|..
T Consensus 331 ~---------------------------~v~~~---~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 331 L---------------------------KPSVR---ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred C---------------------------cEEEe---CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 0 01111 13466767665 8999999999999999999974
No 165
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.28 E-value=0.29 Score=42.66 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=36.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 142 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~ 142 (295)
-+.+.+.++||.|.+++++++++|.||..|+.+..+++-.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~ 43 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEK 43 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCce
Confidence 4678899999999999999999999999999999998753
No 166
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.03 E-value=0.63 Score=33.71 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=40.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~ 283 (295)
+.|.-+||||=|.+++++++. |.||...+-.-.+.....++..-. .+ .+..+++.++|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD----REDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 357789999999999999999 999998877655533333333222 22 2356677776654
No 167
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.00 E-value=0.92 Score=34.49 Aligned_cols=61 Identities=5% Similarity=0.061 Sum_probs=38.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEE-EEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK-FFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~-F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
++.|.-+|+||-|.+++.+|. +.||....-.....+.... +.+... +. ++..+.+.+.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--Cc----HHHHHHHHHHHHH
Confidence 578899999999999999999 6777754443333222222 333321 10 3566777777655
No 168
>PRK07431 aspartate kinase; Provisional
Probab=92.84 E-value=11 Score=38.66 Aligned_cols=139 Identities=15% Similarity=0.204 Sum_probs=81.2
Q ss_pred CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eEEE-EEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552 99 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQT-KFFITRLDTGRKVEDPDLLERIRLTIINNLL 174 (295)
Q Consensus 99 ~~~t~V~V~-~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~--~~~D-~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~ 174 (295)
.+...|++. .++++|+++++.+.|+++|++|..-......+ +..+ .|.+.. +.+.++...+++ +.
T Consensus 437 ~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----------~~~~~~~~~l~~-l~ 505 (587)
T PRK07431 437 RNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----------EDREAAQKVLRE-LA 505 (587)
T ss_pred CCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HH
Confidence 344455554 67889999999999999999998654422122 2222 243322 222333332333 22
Q ss_pred ccCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552 175 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT 251 (295)
Q Consensus 175 ~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I~T 251 (295)
...+ ...+.+. .+...|.|.+. .+||++.++.++|.+.||+|.... |
T Consensus 506 ~~~~-------------------------~~~i~~~---~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~ 555 (587)
T PRK07431 506 KQLP-------------------------GAEVEDG---PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T 555 (587)
T ss_pred HhcC-------------------------CceEEEe---CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c
Confidence 1000 0011111 24577888875 889999999999999999997665 2
Q ss_pred cCCeeeeE-EEEEeCCCCCChHHHHHHHHHHHHHcCCC
Q 022552 252 EGLVAKDK-FHVSYGGAALNSSLSQVLVNCLRYYLRRP 288 (295)
Q Consensus 252 ~g~~a~D~-F~V~~~G~~l~~~~~~~L~~~L~~~L~~~ 288 (295)
....+ |.|. .+..++...+|++.+.-.
T Consensus 556 ---S~~~Is~vV~-------~~~~~~av~~Lh~~f~~~ 583 (587)
T PRK07431 556 ---SEIRTSCVVA-------EDDGVKALQAVHQAFGLA 583 (587)
T ss_pred ---cceEEEEEEe-------HHHHHHHHHHHHHHhccC
Confidence 33333 5551 224456667777776443
No 169
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=92.36 E-value=0.9 Score=44.53 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=43.8
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCC
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAA 268 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~ 268 (295)
+.|.|-+...|+||.|+++-..|+.+|||+.+.+..-.+ ..-+=.|||.-.|..
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~ 350 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANL 350 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCC
Confidence 467777888899999999999999999999999998544 446667888546744
No 170
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=92.29 E-value=0.091 Score=40.23 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=28.9
Q ss_pred EEEEEeCC-CccHHHHHHHHHHHCCceEEEEEE
Q 022552 103 IVQLSFGD-RLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 103 ~V~V~~~D-rpGLl~~I~~vL~~~glnI~~A~I 134 (295)
+|+|.++| +.|++++++++|+++|+||.+-+-
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~ 33 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR 33 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 48999999 999999999999999999986554
No 171
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=92.21 E-value=0.098 Score=40.06 Aligned_cols=32 Identities=9% Similarity=0.276 Sum_probs=28.5
Q ss_pred EEEEEeCC-CcchHHHHHHHHHhCCceEEEEEE
Q 022552 218 LLYIETAD-RPGLLVEIMKIIADVNVDVESAEI 249 (295)
Q Consensus 218 ~IeV~a~D-RPGLL~dIt~~L~~~gI~I~~A~I 249 (295)
+|+|.|.| ++|++++|+++|+++|+||...+-
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~ 33 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR 33 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 37889999 999999999999999999976554
No 172
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.16 E-value=0.38 Score=46.87 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=40.6
Q ss_pred ceEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCC
Q 022552 215 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG 266 (295)
Q Consensus 215 ~~t~IeV~a~-DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G 266 (295)
..+.|.+.-+ |+||-|++|+.+|+++||||.+.++ .....-+-.|+|.-.+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~ 345 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP 345 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence 5688888886 9999999999999999999999999 4333333348886444
No 173
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.06 E-value=0.51 Score=47.97 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=45.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN 279 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V~~~G~~l~~~~~~~L~~ 279 (295)
+.+.+-+...|+||.+..|+.+|.++||||...++.-. |+.+.=++.+ .++++++.+++|++
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~---D~~v~~~~l~~i~~ 514 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV---DDPVPEEVLEELRA 514 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC---CCCCCHHHHHHHhc
Confidence 45666677799999999999999999999999998764 3444443333 44666666666553
No 174
>PRK09034 aspartate kinase; Reviewed
Probab=91.85 E-value=13 Score=37.03 Aligned_cols=112 Identities=14% Similarity=0.251 Sum_probs=67.2
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 99 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 99 ~~~t~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
.+.+.|++.+ .+++|.++++...|+++|+||.-- . . +..--.|.|... . . +...+..+...|...+.
T Consensus 306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~-s-s~~sis~~v~~~---~-~-~~a~~~~l~~el~~~~~- 375 (454)
T PRK09034 306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P-S-GIDDLSIIIRER---Q-L-TPKKEDEILAEIKQELN- 375 (454)
T ss_pred CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c-C-CCcEEEEEEeHH---H-h-hHHHHHHHHHHHHHhhC-
Confidence 3456777764 678999999999999999999874 2 2 222123556431 1 1 00000222222211110
Q ss_pred cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552 176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDT 251 (295)
Q Consensus 176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~I~T 251 (295)
. ..|.+.+ +...|.|.+ .++||++.++..+|++.||+|....-.+
T Consensus 376 ---------------------------~-~~I~~~~---~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 376 ---------------------------P-DELEIEH---DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred ---------------------------C-ceEEEeC---CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 0 0122222 457777754 3889999999999999999998876444
No 175
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.77 E-value=1.4 Score=32.64 Aligned_cols=46 Identities=15% Similarity=0.392 Sum_probs=35.3
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEee
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR 149 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~ 149 (295)
+.+..+|+||-|+++...|+.+|+|+..-.-....+. ..-.|+|.-
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 4455589999999999999999999987666555443 234577876
No 176
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.59 E-value=0.54 Score=40.98 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=39.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCC
Q 022552 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAA 268 (295)
Q Consensus 219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~ 268 (295)
+.+.+.++||.|.+++-++++.|.||.+++-...++--....|+.-+|-.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~ 54 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID 54 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC
Confidence 67889999999999999999999999999987766544444555434443
No 177
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=91.46 E-value=1.3 Score=36.58 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=36.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 142 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~ 142 (295)
++-|..+|+||=++.|.++|.+.++|+-....+++.....
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KA 110 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKA 110 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceE
Confidence 6788899999999999999999999999999999877553
No 178
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.36 E-value=1.7 Score=32.44 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=37.0
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCC
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 154 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~ 154 (295)
+.+..+|+||-|+++...|+.+|+|+..-.-...+.. +.-.|+|.. +|.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~--e~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC--ECD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC
Confidence 4455689999999999999999999987766665442 334588876 454
No 179
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=91.30 E-value=7.5 Score=38.47 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=64.9
Q ss_pred CCeEEEEEEeCCC--ccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022552 99 SDATIVQLSFGDR--LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 176 (295)
Q Consensus 99 ~~~t~V~V~~~Dr--pGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~ 176 (295)
++...|+|.+.+- +|.++++...|.++|++|......+....+ .|.|.. +..++....|.. +.+.
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~sI--s~~I~~----------~~~~~a~~~L~~-~~~~ 366 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSI--SFTVDK----------EDADQAKTLLKS-ELNL 366 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCceE--EEEEEH----------HHHHHHHHHHHH-HHHh
Confidence 3455677765333 799999999999999999866422221111 244432 112222222222 1100
Q ss_pred CCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022552 177 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE 248 (295)
Q Consensus 177 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~ 248 (295)
.. ...|.+.+ +.+.|.|.+ .++||++++|.++|++.|++|....
T Consensus 367 ~~-------------------------~~~I~~~~---~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 367 SA-------------------------LSSVEVEK---GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred cC-------------------------cceEEEcC---CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 00 00122222 457778854 4889999999999999999998775
No 180
>PRK08198 threonine dehydratase; Provisional
Probab=91.09 E-value=2.2 Score=41.73 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=46.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc----CCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~----~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.....+.|.-+|+||-|++++..++++|.||.+-..... +.+...+....+. .+++..+.|.+.|++
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~l~~~L~~ 395 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET------RGPEHIEEILDALRD 395 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 344589999999999999999999999999998876542 2233333332221 134566666666654
No 181
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.09 E-value=0.71 Score=33.41 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=29.6
Q ss_pred CCeEEEEEEeC----CCccHHHHHHHHHHHCCceEEEEE
Q 022552 99 SDATIVQLSFG----DRLGALIDTMNALKDLGLDVAKGT 133 (295)
Q Consensus 99 ~~~t~V~V~~~----DrpGLl~~I~~vL~~~glnI~~A~ 133 (295)
.+...|+|.++ |.||+.++++..|++.|+||....
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 45667888888 799999999999999999998765
No 182
>PRK06382 threonine dehydratase; Provisional
Probab=91.07 E-value=0.63 Score=45.69 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=33.1
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 250 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~ 250 (295)
..+.+.|.-+|+||-|.+|+++|.++|+||.+....
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 378999999999999999999999999999888764
No 183
>PRK06382 threonine dehydratase; Provisional
Probab=90.89 E-value=1.7 Score=42.68 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=46.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE----EcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN----TEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~----T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
...+.+.|..+|+||-|.+++.+|.++|+||.+-... ....+. .-.|.|... +++..+.|.+.|++
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999987664 222222 334555431 23455566666654
No 184
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=90.78 E-value=0.83 Score=47.96 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=36.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 255 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~ 255 (295)
.+.|.|.+.||+|||.+|+++|+..++||.+....+.+.+
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~ 666 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQ 666 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCc
Confidence 7889999999999999999999999999999999876444
No 185
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.50 E-value=0.64 Score=35.10 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=44.1
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eE--EEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552 104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VK--QTKFFITRLDTGRKVEDPDLLERIRLTIINN 172 (295)
Q Consensus 104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~--~~--~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~ 172 (295)
|+++++-||-.|++++-+|+.+|.-|.+|.|..... .- +-.|.+.+ .++.+.......++.+.+...
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e--~~~~~~~~~~r~~i~drv~~~ 73 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE--HDRLKLGGRQRSKVVDRVTKT 73 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC--CCccccchHHHHHHHHHHHHH
Confidence 678899999999999999999999999999965432 21 33344444 232333233334555555443
No 186
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.49 E-value=3.7 Score=30.57 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=38.6
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 223 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 223 a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
..+.||++++|.++|+++|++|...- + ++ ..=.|-+.+...-+.++..++|.+.|.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 45889999999999999999999884 2 33 2233445332211444466777777765
No 187
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=90.45 E-value=0.74 Score=46.82 Aligned_cols=62 Identities=13% Similarity=0.277 Sum_probs=45.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN 279 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V~~~G~~l~~~~~~~L~~ 279 (295)
+.+.+-+.-.||||.+..|+.+|.+++|||..+++... |+.+.=++.+ .++++++.+++|++
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~---D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL---DQPVPDEVLEEIKA 513 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc---CCCCCHHHHHHHhc
Confidence 34566667799999999999999999999999998754 4444433333 44666666666654
No 188
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=90.40 E-value=1.8 Score=38.64 Aligned_cols=41 Identities=12% Similarity=0.299 Sum_probs=35.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 139 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~ 139 (295)
+....+.+.-.|+||....++.+|.++|+||...++.....
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~ 186 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDI 186 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCC
Confidence 44556777779999999999999999999999999988753
No 189
>PRK11898 prephenate dehydratase; Provisional
Probab=90.31 E-value=1.9 Score=40.43 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=48.2
Q ss_pred ceEEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 215 KRSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 215 ~~t~IeV~a~D-RPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
+.+.|-+...+ +||-|+++-..|+++|||+.+.+..-...+ -+=.|||.-+|.. .++..+++.+.|++
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~-~~~~~~~al~~L~~ 264 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI-DDVLVAEALKELEA 264 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC-CCHHHHHHHHHHHH
Confidence 35666677655 699999999999999999999998765444 4456888656754 44444454455544
No 190
>PRK06349 homoserine dehydrogenase; Provisional
Probab=90.25 E-value=1.5 Score=43.47 Aligned_cols=51 Identities=25% Similarity=0.347 Sum_probs=40.8
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022552 214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 264 (295)
Q Consensus 214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~ 264 (295)
...+.|.+...|+||.|.+|+.+|.++|++|.+..-....+....++.+++
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 346889999999999999999999999999998876543334455666665
No 191
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.07 E-value=0.64 Score=44.82 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=41.0
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552 214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 262 (295)
Q Consensus 214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V 262 (295)
+..+.|.|.-+||||-|.+|+..|.+.||||.+.+|.-.-+...-+..+
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~ 336 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI 336 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence 4589999999999999999999999999999999996555554444444
No 192
>PRK09224 threonine dehydratase; Reviewed
Probab=89.79 E-value=17 Score=36.93 Aligned_cols=129 Identities=12% Similarity=0.184 Sum_probs=76.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 178 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~ 178 (295)
..-..+.|.-|||||-|.+++.+|. +.||..-+-...+.....+|..... .+. +...+.|.+.|++. ++..
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~-~~~----~~~~~~i~~~L~~~--gy~~ 396 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQL-SRG----QEERAEIIAQLRAH--GYPV 396 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEe-CCh----hhHHHHHHHHHHHc--CCCe
Confidence 4456889999999999999999998 6888876554444444444544332 121 12367777777651 2111
Q ss_pred C-c-hhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552 179 E-S-SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 250 (295)
Q Consensus 179 ~-~-~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~ 250 (295)
. + ...++. ....++ +..+ .+...+.-++.+.=+.|||-|-+....|. -+-||...+-.
T Consensus 397 ~~ls~ne~~k---------~h~r~~-~g~~---~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 397 VDLSDDELAK---------LHVRYM-VGGR---PPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred EECCCCHHHH---------HHHHhc-cCCC---CCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 0 0 011110 000001 0000 00011346788889999999999999777 77888888774
No 193
>PRK07431 aspartate kinase; Provisional
Probab=89.74 E-value=12 Score=38.45 Aligned_cols=124 Identities=18% Similarity=0.272 Sum_probs=72.4
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
.+...|.|.+. +.+|+++++..+|++.|+||..-. ..+..+ .|.|.. +..++..+.|.+.+..
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~----------~d~~~av~~Lh~~f~~ 411 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDA----------EDGDKALRAVCEAFEL 411 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcH----------HHHHHHHHHHHHHhcc
Confidence 45667888875 799999999999999999997544 222222 244433 2234444445554422
Q ss_pred cCCCchhHhhhccccCccCCcccccccccceEE-ecCCCCceEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552 176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH-VKEDGPKRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEID 250 (295)
Q Consensus 176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~-i~~~~~~~t~IeV~-a~DRPGLL~dIt~~L~~~gI~I~~A~I~ 250 (295)
+.. ...+ .|.+.. .+ ...|. +... .+...|+|. ..++||++++|...|+++|++|.....+
T Consensus 412 ~~~--~~~~---------~~~~~~-~~-~~~v~gIa~~-~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~ 474 (587)
T PRK07431 412 EDS--QIEI---------NPTASG-QD-EPEVRGVALD-RNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS 474 (587)
T ss_pred CCc--cccc---------CccccC-CC-CCcEEEEEcc-CCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 110 0000 000000 00 11122 2111 244555554 5688999999999999999999988653
No 194
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=89.66 E-value=9 Score=41.25 Aligned_cols=113 Identities=12% Similarity=0.200 Sum_probs=69.6
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
.+.+.|+|.+. +++|+++++...|.++|+||......+..... .|.|.. +..++....|.+.+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sI--sf~V~~----------~d~~~av~~L~~~f~~ 380 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSI--SFCVPQ----------SDAAKAKRALEEEFAL 380 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceE--EEEEeH----------HHHHHHHHHHHHHHHH
Confidence 55667888754 68999999999999999999765443322111 254533 1223333333332211
Q ss_pred cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022552 176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 248 (295)
Q Consensus 176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~ 248 (295)
.+. . .+ ...|.+. .+..+|.|.+. ++||++.++.++|.+.||+|....
T Consensus 381 -------el~----~-----~~------~~~i~~~---~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 381 -------ELK----E-----GL------LEPLEVE---ENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred -------Hhc----c-----CC------cceEEEe---CCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 000 0 00 0012222 24577777775 789999999999999999998764
No 195
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=89.64 E-value=1.6 Score=43.72 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=44.1
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeee--EEEEEeCCCC
Q 022552 214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD--KFHVSYGGAA 268 (295)
Q Consensus 214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D--~F~V~~~G~~ 268 (295)
...+.|-+...|+||-|+++-+.|+++|||+.+.+.........+ .|||.-+|..
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~ 85 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH 85 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH
Confidence 346777788899999999999999999999999998766545444 6888656654
No 196
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.08 E-value=0.84 Score=45.01 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=40.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEE
Q 022552 100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 147 (295)
Q Consensus 100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V 147 (295)
....|.+.-.|+||.+++|+..|+++|+||..-++.+.++..+-+|.+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 556788899999999999999999999999999998888666544544
No 197
>PLN02317 arogenate dehydratase
Probab=88.93 E-value=2.7 Score=41.23 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=48.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe---------------eeeEEEEEeCCCCCChHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV---------------AKDKFHVSYGGAALNSSLSQVLVNC 280 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~---------------a~D~F~V~~~G~~l~~~~~~~L~~~ 280 (295)
.|.|-+.-.|+||-|+++-.+|+.+|||+.+.+..-...+ -+=.|||.-+|.. .++..+...+.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~-~d~~~~~aL~~ 361 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM-ADPRAQNALAH 361 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCc-CCHHHHHHHHH
Confidence 5778888899999999999999999999999998665433 2336888656643 34433444444
Q ss_pred HHH
Q 022552 281 LRY 283 (295)
Q Consensus 281 L~~ 283 (295)
|++
T Consensus 362 L~~ 364 (382)
T PLN02317 362 LQE 364 (382)
T ss_pred HHH
Confidence 443
No 198
>PRK09181 aspartate kinase; Validated
Probab=88.72 E-value=11 Score=38.09 Aligned_cols=105 Identities=11% Similarity=0.183 Sum_probs=66.0
Q ss_pred CeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022552 100 DATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 176 (295)
Q Consensus 100 ~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~ 176 (295)
+.+.|+|.+. +.+|+.+++...|.+.|++|. -+.+....+ .|.|.. + .++++++...|...+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~si--s~~v~~--~------~~~~~~~~~~L~~~~~~- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNANTI--THYLWG--S------LKTLKRVIAELEKRYPN- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCcEE--EEEEcC--C------hHHHHHHHHHHHHhcCC-
Confidence 5667787544 789999999999999999998 233332222 355532 1 12334443333321110
Q ss_pred CCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCC--CcchHHHHHHHHHhCCceEEEEEE
Q 022552 177 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD--RPGLLVEIMKIIADVNVDVESAEI 249 (295)
Q Consensus 177 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~D--RPGLL~dIt~~L~~~gI~I~~A~I 249 (295)
..|.. .+..+|.|.+.. +||+..++.++|.+.||||....-
T Consensus 395 ----------------------------~~i~~----~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 395 ----------------------------AEVTV----RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred ----------------------------ceEEE----CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 01211 244667776653 899999999999999999977653
No 199
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=88.56 E-value=4 Score=39.46 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=31.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN 135 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~ 135 (295)
...+.|..+|+||.|++++..+++.|.||.+-...
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 34899999999999999999999999999987544
No 200
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.36 E-value=5.6 Score=29.59 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=36.5
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHH-HHHHHHHHH
Q 022552 223 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLS-QVLVNCLRY 283 (295)
Q Consensus 223 a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~-~~L~~~L~~ 283 (295)
..++||++++|..+|+++||+|...- + ++ ..=.|-+.. .....+..+ ++|...|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~-~d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN-TGSTSDQLLTQALLKELSQ 67 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec-cccchhHHHHHHHHHHHHh
Confidence 56889999999999999999999884 2 33 333344533 222223323 366666655
No 201
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=88.20 E-value=3.1 Score=41.47 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=48.4
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
.+.|-+...|+||-|++|-++|+++|||+.+.+..-.. ..-+=.|||.-+|.. ++..+++.+.|+.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~--~~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS--DRKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc--cHHHHHHHHHHHH
Confidence 57788888999999999999999999999999886543 334456888656654 2333444444443
No 202
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.20 E-value=1.9 Score=41.48 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=41.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEe
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 148 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~ 148 (295)
+....|.|.-+|+||-++.|+..|...|+||.+-+|....+...-++.+.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 56789999999999999999999999999999999977766443334443
No 203
>PLN02551 aspartokinase
Probab=88.04 E-value=29 Score=35.51 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=69.1
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
.+.+.|+|.+. +++|.++++...|.++|++|.--. +..... .|.+... .. ...+.++..+.+.+..
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe~sI--s~~v~~~----~~---~~~~~i~~~l~~l~~e 432 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSI--SLTLDPS----KL---WSRELIQQELDHLVEE 432 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccCCEE--EEEEehh----Hh---hhhhhHHHHHHHHHHH
Confidence 45567788655 689999999999999999998652 222122 3555431 11 1123333333332211
Q ss_pred cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552 176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDT 251 (295)
Q Consensus 176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~--DRPGLL~dIt~~L~~~gI~I~~A~I~T 251 (295)
|. + + ..|.+.+ +..+|.|.+. .+||++.++.++|++.||||....-.+
T Consensus 433 --------l~-----------~---~---~~V~v~~---~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 433 --------LE-----------K---I---AVVNLLQ---GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred --------hh-----------c---C---CeEEEeC---CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 10 0 0 1122222 3466666644 689999999999999999998776433
No 204
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=87.69 E-value=6.1 Score=27.48 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=31.6
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 218 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 218 ~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
.|.+.+ .+.||++++|.++|.+.|++|....-.+ .+ ..=.|.+.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s~-~~is~~v~ 49 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-SE-RNISAVID 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc-cEEEEEEe
Confidence 455555 4889999999999999999998875444 22 33335563
No 205
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=87.66 E-value=33 Score=34.44 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=65.2
Q ss_pred CCeEEEEEEeCC---CccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 99 SDATIVQLSFGD---RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 99 ~~~t~V~V~~~D---rpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
.+.+.|+|.+.. .+|.++++...|.++|+||..-.......+ -.|.+... ...+....|.+....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~----------~~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES----------DAPRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh----------hHHHHHHHHHHHHhh
Confidence 455667776443 459999999999999999975433332233 23555431 122333333332211
Q ss_pred cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEE---eCCCcchHHHHHHHHHhCCceEEEEE
Q 022552 176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIE---TADRPGLLVEIMKIIADVNVDVESAE 248 (295)
Q Consensus 176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~---a~DRPGLL~dIt~~L~~~gI~I~~A~ 248 (295)
. + . .|.+.. +...|.+. ....||..+++.++|++.||||....
T Consensus 373 --~-----~-----------------~---~v~~~~---~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 373 --L-----L-----------------A---EVEVEE---GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred --h-----c-----------------c---eEEeeC---CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 0 0 0 122222 23444554 45789999999999999999999887
No 206
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.34 E-value=4.3 Score=33.02 Aligned_cols=49 Identities=4% Similarity=0.114 Sum_probs=37.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEee
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR 149 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~ 149 (295)
.+.+.+..+|+||-|+++...|+.+|+|+.+-.-...+.. ..-.|+|..
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 4566666699999999999999999999987666655443 223477766
No 207
>PRK12483 threonine dehydratase; Reviewed
Probab=87.13 E-value=32 Score=35.18 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=86.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHH-HHHHHHHHHhhcccC
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLL-ERIRLTIINNLLKYH 177 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~l-e~L~~~L~~~L~~~~ 177 (295)
.....+.|.-+||||-|.+++.+|... ||.+-.-...+.+...++..... . +++.. +.|...|++. +..
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-~-----~~~~~~~~i~~~l~~~--g~~ 412 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQT-H-----PRHDPRAQLLASLRAQ--GFP 412 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEe-C-----ChhhhHHHHHHHHHHC--CCC
Confidence 456689999999999999999999988 88766555443333333433332 1 23444 6777776651 211
Q ss_pred CC-c-hhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHh-CCceEEEEEEEecCC
Q 022552 178 PE-S-SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIAD-VNVDVESAEIDTEGL 254 (295)
Q Consensus 178 ~~-~-~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~-~gI~I~~A~I~T~g~ 254 (295)
.. + ...+++ .+ ..++ +..+ .+...+.-++.|.=+.|||=|.+++++|.. .+|.-.+=+.. |.
T Consensus 413 ~~dlsdne~~k-----~h----~r~~-~g~~---~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~~--~~ 477 (521)
T PRK12483 413 VLDLTDDELAK-----LH----IRHM-VGGR---APLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRNH--GA 477 (521)
T ss_pred eEECCCCHHHH-----HH----HHhc-cCCC---CCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecCC--CC
Confidence 10 0 011110 00 0000 0000 001123578888899999999999999997 46665554432 44
Q ss_pred eeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552 255 VAKDKFHVSYGGAALNSSLSQVLVNCLR 282 (295)
Q Consensus 255 ~a~D~F~V~~~G~~l~~~~~~~L~~~L~ 282 (295)
....+|. |-++.+.+.+++.+.|.
T Consensus 478 ~~a~v~v----gi~~~~~~~~~~~~~l~ 501 (521)
T PRK12483 478 ADGRVLA----GLQVPEDERAALDAALA 501 (521)
T ss_pred CceEEEE----EEeeChhHHHHHHHHHH
Confidence 4444444 21222344566666654
No 208
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=86.77 E-value=7.3 Score=28.84 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=36.8
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 224 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 224 ~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
.-.||++++|.++|+++|++|...-. ++ ..=.|-+.. ..+.++.+++|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~--~~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM--ENAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh--hhcChHHHHHHHHHHHH
Confidence 45699999999999999999998843 33 222344432 23334466677777765
No 209
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=86.66 E-value=4.3 Score=38.19 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=47.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
..|.+.+..+|+||.|+++.++|+.+|+|...-.-.-.+.+. .-.|+|.- +|.. .+ ..+++.|++
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~-~~----~~v~~AL~e 258 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI-DD----PLVKEALEE 258 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc-Cc----HhHHHHHHH
Confidence 367888888899999999999999999999876666666543 34588876 4653 23 344555554
No 210
>PLN02550 threonine dehydratase
Probab=86.35 E-value=38 Score=35.26 Aligned_cols=152 Identities=9% Similarity=0.124 Sum_probs=85.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC-
Q 022552 100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP- 178 (295)
Q Consensus 100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~- 178 (295)
....+.|.-+||||-|.+++.+|... ||.+-.-....-+...++..... .+++..+.|...|++. +...
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~l~~~--g~~~~ 485 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV------HTEQELQALKKRMESA--QLRTV 485 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe------CCHHHHHHHHHHHHHC--CCCeE
Confidence 34678999999999999999999986 77765554432222323333321 1346778888877652 2111
Q ss_pred Cc-hhHhhhccccCccCCccccccc-ccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHh-CCceEEEEEEEecCCe
Q 022552 179 ES-SEQLAMGEAFGIKAPEKKLDVD-IATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIAD-VNVDVESAEIDTEGLV 255 (295)
Q Consensus 179 ~~-~~~La~~~~~~~~~~~r~~~~~-~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~-~gI~I~~A~I~T~g~~ 255 (295)
++ ...+++ .+..++. .... + .+.-++.+.=+.|||-|.++.++|.. .+|.-.+=+ ..|+.
T Consensus 486 ~l~~~~~~~---------~~LR~v~g~ra~--~----~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR--~~~~~ 548 (591)
T PLN02550 486 NLTSNDLVK---------DHLRYLMGGRAI--V----KDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR--GQGET 548 (591)
T ss_pred eCCCChHHh---------hhhhheeccccc--c----CceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee--cCCCC
Confidence 00 011211 1111111 1111 1 23478888899999999999998886 355555444 33444
Q ss_pred eeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552 256 AKDKFHVSYGGAALNSSLSQVLVNCLR 282 (295)
Q Consensus 256 a~D~F~V~~~G~~l~~~~~~~L~~~L~ 282 (295)
.-.+|. |-.+.+...++|.+.|.
T Consensus 549 ~a~vlv----Gi~v~~~e~~~l~~~l~ 571 (591)
T PLN02550 549 GANVLV----GIQVPPEEMQEFKSRAN 571 (591)
T ss_pred CccEEE----EEeeCHHHHHHHHHHHH
Confidence 333444 11222235566666654
No 211
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.77 E-value=3.9 Score=30.96 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=36.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
++.|.-+||||=|.+++++|... ||....-.-.+ +.+.-.+.+.-.+. .+..+++.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~~a--nI~~~~y~~~~~~~~~v~i~ie~~~~---~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIGPR--NITEFNYRYADEKDAHIFVGVSVANG---AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhCCC--ceeEEEEEccCCCeeEEEEEEEeCCc---HHHHHHHHHHHHH
Confidence 57888999999999999999944 44443333222 33333333432321 2355566666654
No 212
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=85.61 E-value=6.5 Score=38.02 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=43.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-----GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-----g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
...+.|.-+||||-|.+|++.+++.|.||.+..-... -+.+.=.+.+.-.+ ....++|.+.|.+
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~----~~~~~~i~~~L~~ 373 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG----KEHLDEILKILRD 373 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 5589999999999999999999999999988855421 12333334342222 2345566666654
No 213
>PRK11899 prephenate dehydratase; Provisional
Probab=84.94 E-value=8.9 Score=35.99 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=41.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCC
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 154 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~ 154 (295)
-|.+.+..+|+||.|+++.++|+..|+|+..-.-.-.+++ +.-.|+|.- +|.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~ 246 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH 246 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC
Confidence 4667777799999999999999999999987776666554 244688876 565
No 214
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=84.11 E-value=4.9 Score=34.83 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=46.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 172 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~ 172 (295)
...+.+.-.|.||.|.++++.|+..|+||.+-.+..+.+.-.-...+.- .|. +..++++...|...
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g~----~~~~EQi~kQL~kL 69 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SGD----EQVLEQIIKQLNKL 69 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cCC----cchHHHHHHHHHhh
Confidence 3478888999999999999999999999999888766543332222222 232 24567777776663
No 215
>PRK06349 homoserine dehydrogenase; Provisional
Probab=83.00 E-value=6.8 Score=38.79 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=40.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEee
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 149 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~ 149 (295)
.....|.+...|+||.|++|++.|.++|+||.+-......++....+.+++
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 345688999999999999999999999999998766554444455566766
No 216
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=82.68 E-value=14 Score=26.02 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=24.0
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEE
Q 022552 218 LLYIETA---DRPGLLVEIMKIIADVNVDVE 245 (295)
Q Consensus 218 ~IeV~a~---DRPGLL~dIt~~L~~~gI~I~ 245 (295)
.|.|.+. ++||++.++.++|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4556654 789999999999999999995
No 217
>PRK09084 aspartate kinase III; Validated
Probab=82.67 E-value=39 Score=33.71 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
.+...|+|.+. +.+|.++++...|+++|+||.--. +. + .--.|.|... . . .......+...+.+.+.+
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss-e-~sIs~~i~~~--~--~-~~~~~~~~~~~l~~el~~ 374 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS-E-VSVSLTLDTT--G--S-TSTGDTLLTQALLTELSQ 374 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc-C-cEEEEEEech--h--h-hhhhhHHHHHHHHHHHhc
Confidence 45567888654 789999999999999999998664 22 2 1123556442 1 1 001112222233222211
Q ss_pred cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCc
Q 022552 176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNV 242 (295)
Q Consensus 176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI 242 (295)
. ..|.+. .+...|.|.|. ++||++.++..+|.+.++
T Consensus 375 --~--------------------------~~i~~~---~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 375 --L--------------------------CRVEVE---EGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred --C--------------------------CeEEEE---CCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 0 012221 24577888776 799999999999987544
No 218
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=82.00 E-value=5.9 Score=34.31 Aligned_cols=35 Identities=20% Similarity=0.455 Sum_probs=31.3
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 250 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~ 250 (295)
..++.+--.|.||.|.+++-.|+..|+||.+..+.
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~ 38 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVG 38 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEE
Confidence 35677778899999999999999999999999985
No 219
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.41 E-value=15 Score=25.51 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=27.8
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552 218 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT 251 (295)
Q Consensus 218 ~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I~T 251 (295)
+|.+.+. ++||++++|.++|.+.|++|....-.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 789999999999999999998876544
No 220
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=81.29 E-value=12 Score=27.37 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=38.7
Q ss_pred EEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCC-hHHHHHHHHHHHH
Q 022552 217 SLLYIE---TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALN-SSLSQVLVNCLRY 283 (295)
Q Consensus 217 t~IeV~---a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~-~~~~~~L~~~L~~ 283 (295)
+.+.|. ..+.||++++|..+|+++|++|...- + ++ ..=.|.+.. ..... +..+++|.+.|.+
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~~-~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLDP-TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEEc-hhhccchHHHHHHHHHHHh
Confidence 345553 35789999999999999999997763 3 22 222344533 22222 2355666666655
No 221
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=80.42 E-value=6 Score=34.21 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=39.3
Q ss_pred eEEEEEEe--CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHH
Q 022552 216 RSLLYIET--ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV 278 (295)
Q Consensus 216 ~t~IeV~a--~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~ 278 (295)
.-+|++.. ++.||+|+.++..++++||+|..+-.. ..+-.++.|..-=.-+++......+|+
T Consensus 93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~-dpe~~~e~~l~IVte~~iP~~li~el~ 156 (167)
T COG2150 93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE-DPELQEEPKLTIVTERPIPGDLIDELK 156 (167)
T ss_pred CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC-CcccCCCceEEEEEeccCCHHHHHHHh
Confidence 45666665 678999999999999999999987643 222333333221134555555444443
No 222
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=80.36 E-value=3.7 Score=27.21 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=25.6
Q ss_pred EEEEeCC---CcchHHHHHHHHHhCCceEEEEEEE
Q 022552 219 LYIETAD---RPGLLVEIMKIIADVNVDVESAEID 250 (295)
Q Consensus 219 IeV~a~D---RPGLL~dIt~~L~~~gI~I~~A~I~ 250 (295)
|+|.+.+ .||+++++.++|.++|++|......
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 4445444 8999999999999999999877543
No 223
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=80.34 E-value=3.7 Score=38.07 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=36.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE
Q 022552 100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 142 (295)
Q Consensus 100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~ 142 (295)
...++.+..-|.||.+.+|+++|+..|+||.+--+--+.+..+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~L 118 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKAL 118 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhh
Confidence 3457899999999999999999999999999988766655544
No 224
>PRK08818 prephenate dehydrogenase; Provisional
Probab=79.87 E-value=5.1 Score=39.13 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=38.9
Q ss_pred CeEEEEEEeC-CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEee
Q 022552 100 DATIVQLSFG-DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 149 (295)
Q Consensus 100 ~~t~V~V~~~-DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~ 149 (295)
..+.+.+.-+ |+||-++++..+|+.+|+||..-.+.....+..- |+|.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEE
Confidence 4566777776 9999999999999999999998888444444443 88766
No 225
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=79.64 E-value=15 Score=25.49 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=28.7
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022552 223 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 264 (295)
Q Consensus 223 a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~ 264 (295)
..++||+.++|.++|+++|+++.... | ++ ..=.|++..
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 45789999999999999999999883 3 33 333466643
No 226
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.40 E-value=16 Score=27.51 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=28.9
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022552 223 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 264 (295)
Q Consensus 223 a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~ 264 (295)
..+.||++++|-++|+++|++|...- + ++ ..=.|.+..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence 46889999999999999999999884 2 33 333455643
No 227
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=79.24 E-value=17 Score=35.73 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=44.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE-cCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T-~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.....+.|.-|||||-|.+++..+...+.||..-+-.. .+-+...++..... .+++..++|.+.|++
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~------~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL------NDKEDFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 55668999999999999999997778888999655442 22222222322221 124666777777765
No 228
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.00 E-value=6.7 Score=29.66 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=47.6
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCc
Q 022552 224 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETD 291 (295)
Q Consensus 224 ~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~~~~~ 291 (295)
....|++.++.++|.++|+++++.-. ..|.|.|.=+...+.++..+++.+.|+..+.....+
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~PS------GID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i~ 73 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMPS------GIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEIE 73 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeecC------CCccEEEEEEccccchhhHHHHHHHHHHhcCCCEEE
Confidence 45589999999999999999998642 345566655677777767788888888888776544
No 229
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.79 E-value=19 Score=24.86 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=31.6
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 218 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 218 ~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
++.+.+. ++||++.++.+.|++.|++|......+. + ..=.|.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s-~-~~isf~i~ 49 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSS-E-YNISFVVA 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc-c-ceEEEEEe
Confidence 4555554 7899999999999999999988765442 2 22236663
No 230
>PRK08526 threonine dehydratase; Provisional
Probab=78.54 E-value=15 Score=36.23 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=47.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe----EEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV----KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~----~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.....+.|.-+|+||-|.+++..+...|.||.+-.-...... ...+...... .+++..++|.+.|++
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~------~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET------KGKEHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 566789999999999999999999999999998776443332 2222322221 134677777777754
No 231
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=78.52 E-value=2.5 Score=42.88 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=33.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 253 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g 253 (295)
.++|.|.||.|+..+|...|..++||+...+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 479999999999999999999999999999998764
No 232
>PRK08198 threonine dehydratase; Provisional
Probab=78.07 E-value=8.8 Score=37.47 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=33.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 251 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T 251 (295)
...+.|.-+|+||-|.++.+.+.+.|.||......-
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 679999999999999999999999999999887653
No 233
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=77.78 E-value=8.7 Score=29.45 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=41.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEE
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHV 262 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V 262 (295)
.|.+++.+.++|+.|.+|-++-...|..|....-++. ++.+.--|.|
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 4789999999999999999999999999999988876 6777666777
No 234
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=77.26 E-value=6.9 Score=27.50 Aligned_cols=27 Identities=26% Similarity=0.553 Sum_probs=23.9
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEE
Q 022552 223 TADRPGLLVEIMKIIADVNVDVESAEI 249 (295)
Q Consensus 223 a~DRPGLL~dIt~~L~~~gI~I~~A~I 249 (295)
..|+||.+++|.++|.+.|++|....-
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 468999999999999999999986644
No 235
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=77.24 E-value=21 Score=24.64 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=25.9
Q ss_pred EEEEEe---CCCccHHHHHHHHHHHCCceEEEEEE
Q 022552 103 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 103 ~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~I 134 (295)
.|.+.| ++.+|+++++...|++.|++|..-..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 455555 57899999999999999999976543
No 236
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=76.67 E-value=24 Score=24.89 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.4
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEE
Q 022552 103 IVQLSFG---DRLGALIDTMNALKDLGLDVA 130 (295)
Q Consensus 103 ~V~V~~~---DrpGLl~~I~~vL~~~glnI~ 130 (295)
.|.|.+. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4566664 789999999999999999996
No 237
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=75.78 E-value=9.2 Score=38.96 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=34.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 139 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~ 139 (295)
.....+.+...|+||.+..++.+|.++|+||...++.....
T Consensus 450 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~ 490 (526)
T PRK13581 450 PEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREA 490 (526)
T ss_pred CCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCC
Confidence 34455666779999999999999999999999999887543
No 238
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=75.77 E-value=5.7 Score=34.35 Aligned_cols=72 Identities=7% Similarity=0.065 Sum_probs=43.8
Q ss_pred hccchhhhccccccCCCCCCCCCcCcCCCCCcEEEEe---ecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEE
Q 022552 58 KKNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLID---QDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~i~---~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I 134 (295)
.++.+++.++...-.+.. +..|... .|...+. ...+-+-..+...-++.||+++.+++.++++|++|..+-.
T Consensus 54 dRrvV~~Ti~~I~sd~~L----~~if~nl-~P~a~l~~vA~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 54 DRRVVYATIELIESDEEL----RRIFENL-EPVASLADVAPLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred chHhHHHHHHHHhcCHHH----HHHHHhc-cchhhHHHHHHhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 444556665555533332 2445444 3443222 2223333344444578899999999999999999998643
No 239
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=75.31 E-value=21 Score=35.07 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=40.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCC
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 154 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~ 154 (295)
.+.+.+..+|+||.|+++-+.|+..|+|+..-.-.-.+++ +.-.|+|.- +|.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~--eg~ 349 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV--QAN 349 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE--eCC
Confidence 5666677789999999999999999999987776655553 344588876 565
No 240
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=74.34 E-value=1e+02 Score=31.23 Aligned_cols=127 Identities=12% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 178 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~ 178 (295)
..-..+.|.-|||||-|.+++.+|.. .||..-+-...+.....+|..... .+++.++.|.+.|++. ++..
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~------~~~~~~~~l~~~L~~~--Gy~~ 392 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQL------SNPQERQEILARLNDG--GYSV 392 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEe------CCHHHHHHHHHHHHHc--CCCe
Confidence 45568899999999999999999997 577766555444444444544332 1346778888887652 2111
Q ss_pred C-c-hhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 022552 179 E-S-SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEI 249 (295)
Q Consensus 179 ~-~-~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I 249 (295)
. + ...++ +.+ ..++ +..+ .+...+.-+..+.=+-|||-|-+.-.+|.. +-||...+-
T Consensus 393 ~dls~ne~~-----k~h----~r~~-~g~~---~~~~~~e~~~~~~fperpgaL~~Fl~~l~~-~~~It~f~Y 451 (499)
T TIGR01124 393 VDLTDDELA-----KLH----VRYM-VGGR---PPHVENERLYSFEFPERPGALLRFLNTLQG-YWNISLFHY 451 (499)
T ss_pred EECCCCHHH-----HHH----HHhc-cCCC---CCCCCCceEEEEeCCCCccHHHHHHHhcCC-CCceeeEEE
Confidence 0 0 01111 000 0011 0000 001123467888899999999888775533 446666665
No 241
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=74.13 E-value=18 Score=26.26 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=40.6
Q ss_pred EEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEEEeCCCCCChHHHHHHHHHHHHHcCCCC
Q 022552 217 SLLYIE---TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHVSYGGAALNSSLSQVLVNCLRYYLRRPE 289 (295)
Q Consensus 217 t~IeV~---a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~-F~V~~~G~~l~~~~~~~L~~~L~~~L~~~~ 289 (295)
+.|+|. ..+++|+++++.++|++.|+++....-++.+ .+. |.+.+. .. +...+.|.+.+...+.+..
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~---~~isf~v~~~-d~--~~~~~~l~~~~~~~~~~~~ 72 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE---HSISFVVDES-DA--DKALEALEEEFALEIKAGL 72 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc---ceEEEEEeHH-HH--HHHHHHHHHHHHhhhhhCc
Confidence 345563 3478999999999999999999877654333 232 445321 11 1234556666654444433
No 242
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.91 E-value=5.2 Score=26.84 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=29.5
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEE
Q 022552 223 TADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVS 263 (295)
Q Consensus 223 a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~ 263 (295)
..|.||++.++..+|.++|++|........+ +...=.|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 4788999999999999999999887653222 2233346663
No 243
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=72.51 E-value=32 Score=25.10 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=24.5
Q ss_pred EEEEE---eCCCccHHHHHHHHHHHCCceEEEE
Q 022552 103 IVQLS---FGDRLGALIDTMNALKDLGLDVAKG 132 (295)
Q Consensus 103 ~V~V~---~~DrpGLl~~I~~vL~~~glnI~~A 132 (295)
.|++. ..+.+|+++++..+|++.|++|..-
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i 35 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI 35 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 45553 3678999999999999999999654
No 244
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.41 E-value=29 Score=23.92 Aligned_cols=34 Identities=9% Similarity=0.242 Sum_probs=27.8
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552 218 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT 251 (295)
Q Consensus 218 ~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I~T 251 (295)
++.+.+. ++||++++|...|++.|++|......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556654 789999999999999999998886544
No 245
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=71.09 E-value=84 Score=34.08 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=60.8
Q ss_pred CCeEEEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 99 SDATIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 99 ~~~t~V~V~---~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
.+.+.|+|. ..+.+|.+++|...|+++|+||.-- .+....+ +|.+.+. . .....+.++.+... +..
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse~si--s~~i~~~--~-~~~~~~~~~~l~~~----l~~ 388 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSETNV--TVSLDPS--E-NLVNTDVLAALSAD----LSQ 388 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCCCEE--EEEEccc--c-ccchHHHHHHHHHH----Hhh
Confidence 455677775 4468999999999999999999754 2222122 2444331 1 10011222222222 211
Q ss_pred cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceE
Q 022552 176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDV 244 (295)
Q Consensus 176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I 244 (295)
. ..|.+.+ +..+|.|.+. .+||++.++..+|.+.||++
T Consensus 389 --~--------------------------~~i~~~~---~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 389 --I--------------------------CRVKIIV---PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred --c--------------------------CcEEEeC---CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 0 0011111 3467777765 88999999999999987655
No 246
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=71.07 E-value=9.4 Score=38.88 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 139 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~ 139 (295)
..+..+.+.-.|+||.+..+..+|.++++||...++.....
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~ 489 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEK 489 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCC
Confidence 34445566779999999999999999999999988877654
No 247
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=71.04 E-value=26 Score=22.86 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=24.7
Q ss_pred EEEEeCC---CccHHHHHHHHHHHCCceEEEEEE
Q 022552 104 VQLSFGD---RLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 104 V~V~~~D---rpGLl~~I~~vL~~~glnI~~A~I 134 (295)
|+|.+.+ .+|.+.++.+.|.++|++|..-..
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 4555444 899999999999999999976543
No 248
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.02 E-value=24 Score=23.39 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.5
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEEE
Q 022552 108 FGDRLGALIDTMNALKDLGLDVAKGTVN 135 (295)
Q Consensus 108 ~~DrpGLl~~I~~vL~~~glnI~~A~I~ 135 (295)
.+|.+|.++++...|.++|++|......
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 5889999999999999999999775553
No 249
>PRK08639 threonine dehydratase; Validated
Probab=69.73 E-value=36 Score=33.59 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=43.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE-cCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T-~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.....+.+.-|||||-|.+++..+...+.||..-+-.. .+.....++...+ ..+++..++|.+.|++
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE------LKDAEDYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 55668999999999999999997777777999765432 1111212222222 1124666777777765
No 250
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=69.38 E-value=45 Score=38.56 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=63.8
Q ss_pred CcEEEEeec--CCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-----eEEEEEEEeecCCCCCCCChH
Q 022552 88 MPHVLIDQD--SNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-----VKQTKFFITRLDTGRKVEDPD 160 (295)
Q Consensus 88 ~p~V~i~~~--~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-----~~~D~F~V~~~~~g~~~~d~~ 160 (295)
+..|.+... ..++.+.+.++.+.++..|+++.-+|..+|+.|.+.+-+.... .++..|.+... .+..+...+
T Consensus 474 ~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~ 552 (1528)
T PF05088_consen 474 PLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDD 552 (1528)
T ss_pred CceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHH
Confidence 345555533 3456789999999999999999999999999999998766653 24677999886 554343345
Q ss_pred HHHHHHHHHHHhhcc
Q 022552 161 LLERIRLTIINNLLK 175 (295)
Q Consensus 161 ~le~L~~~L~~~L~~ 175 (295)
.++.+++.+..+..+
T Consensus 553 ~~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 553 IRERFEEAFEAVWNG 567 (1528)
T ss_pred HHHHHHHHHHHHhcC
Confidence 667777777766543
No 251
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=69.15 E-value=10 Score=25.53 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=25.9
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 022552 218 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEI 249 (295)
Q Consensus 218 ~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I 249 (295)
.|++.+. +++|+++++...|.+.+++|.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3555443 8899999999999999999976654
No 252
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.74 E-value=33 Score=23.16 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=24.9
Q ss_pred EEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022552 219 LYIET---ADRPGLLVEIMKIIADVNVDVESAE 248 (295)
Q Consensus 219 IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~ 248 (295)
|.|.+ .+.||++.++...|.+.|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45544 4679999999999999999997775
No 253
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=67.76 E-value=36 Score=23.65 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.6
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEE
Q 022552 108 FGDRLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 108 ~~DrpGLl~~I~~vL~~~glnI~~A~I 134 (295)
.+|++|.+++++..|.+.|+||.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 579999999999999999999985443
No 254
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.07 E-value=39 Score=23.37 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=26.5
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEE
Q 022552 103 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNT 136 (295)
Q Consensus 103 ~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T 136 (295)
.|.+.+. +++|..+++.+.|++.|++|.--...+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 689999999999999999997654433
No 255
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.48 E-value=43 Score=23.65 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=30.0
Q ss_pred EEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEE
Q 022552 218 LLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHV 262 (295)
Q Consensus 218 ~IeV~a~--DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~-F~V 262 (295)
+|.+.|. ..||++.++.++|.+.|++|....-.+ ....+ |.|
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~---s~~sis~~v 47 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA---SKVNISLIV 47 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC---ccceEEEEE
Confidence 4445443 468999999999999999998776444 33443 555
No 256
>PRK14646 hypothetical protein; Provisional
Probab=65.24 E-value=87 Score=26.72 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552 113 GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 174 (295)
Q Consensus 113 GLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~ 174 (295)
-+...+..++..+|+.+++..+...+...+-..+|... +|..++ -+.-+.+...|...|+
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~-~g~gVt-ldDC~~vSr~is~~LD 67 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKT-NGDDIS-LDDCALFNTPASEEIE 67 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECC-CCCCcc-HHHHHHHHHHHHHHhC
Confidence 45667888999999999999999987765434555442 343342 3566777777776664
No 257
>PRK11898 prephenate dehydratase; Provisional
Probab=64.88 E-value=50 Score=30.89 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=37.4
Q ss_pred eEEEEEEeCC-CccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCC
Q 022552 101 ATIVQLSFGD-RLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 154 (295)
Q Consensus 101 ~t~V~V~~~D-rpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~ 154 (295)
.+.+.+..++ +||.|+++.+.|+.+|+|+.+-.-.-..+. +.-.|+|.- +|.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~--eg~ 249 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV--EGH 249 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE--Ecc
Confidence 4556666655 599999999999999999987666555432 233577766 465
No 258
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=64.13 E-value=2.2e+02 Score=30.90 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=64.9
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
.+.+.|+|.+. +.+|.++++..+|.++|++|..-... .+...-.|.+.. +.++++...|.+ +..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~--~s~~sis~~i~~----------~~~~~~~~~l~~-~~~ 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVH--PDRQLLQLAYTS----------EVADSALKLLDD-AAL 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEec--CCCcEEEEEEeH----------HHHHHHHHHHHh-hcC
Confidence 45567787765 77899999999999999998755432 222211233321 122333332322 100
Q ss_pred cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 022552 176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA 247 (295)
Q Consensus 176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A 247 (295)
. ..|.+.. +...|.|.+. .+||+..++..+|.+.||++...
T Consensus 382 ---~-------------------------~~i~v~~---~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 382 ---P-------------------------GELKLRE---GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred ---C-------------------------CcEEEeC---CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 0 1122222 4577777774 68999999999999999998544
No 259
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=63.90 E-value=30 Score=34.85 Aligned_cols=52 Identities=8% Similarity=0.164 Sum_probs=39.1
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-E-EEEEEee
Q 022552 98 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-Q-TKFFITR 149 (295)
Q Consensus 98 ~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~-D~F~V~~ 149 (295)
..+.+.|.+..+|++|-|+++-++|+.+|+|+.+-.-...+... . -.|+|..
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 44556677777999999999999999999999876655544332 2 3577876
No 260
>PLN02317 arogenate dehydratase
Probab=63.46 E-value=51 Score=32.44 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=39.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe---------------EEEEEEEeecCCCC
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV---------------KQTKFFITRLDTGR 154 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~---------------~~D~F~V~~~~~g~ 154 (295)
.|.|.+.-+|+||-|+++..+|+..|+|+..-.-.-.+.. +.-.|+|.. +|.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~--eg~ 349 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDF--EAS 349 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEE--EcC
Confidence 4667777799999999999999999999987665554333 334688876 454
No 261
>PRK08526 threonine dehydratase; Provisional
Probab=63.37 E-value=42 Score=33.00 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=45.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-----eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-----AKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-----a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
....+.|.-+||||-|.++++.+.+.+.||....-...... +.=.+.+.-.| .+++++|.+.|.+
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~----~~~~~~~~~~l~~ 394 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKG----KEHQEEIRKILTE 394 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 47889999999999999999999999999998877554322 22112221122 2366777777754
No 262
>PRK14636 hypothetical protein; Provisional
Probab=62.84 E-value=89 Score=27.31 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=43.2
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 110 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 110 DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
|..-+...+..++..+|+.+++..+...+...+-..+|..+ +|..+ +=+..+++...|...|+.
T Consensus 3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~-~~ggV-~lDDC~~vSr~Is~~LD~ 66 (176)
T PRK14636 3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERP-DTRQL-VIEDCAALSRRLSDVFDE 66 (176)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECC-CCCCc-CHHHHHHHHHHHHHHhcc
Confidence 34456677888999999999999998877655434555443 33324 236777777777777753
No 263
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.27 E-value=13 Score=27.54 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=25.3
Q ss_pred EEEEE---eCCCccHHHHHHHHHHHCCceEEEE
Q 022552 103 IVQLS---FGDRLGALIDTMNALKDLGLDVAKG 132 (295)
Q Consensus 103 ~V~V~---~~DrpGLl~~I~~vL~~~glnI~~A 132 (295)
.|+|. .++++|++++|...|+++|+||..-
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 45552 5788999999999999999999865
No 264
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=62.10 E-value=46 Score=22.43 Aligned_cols=30 Identities=17% Similarity=0.450 Sum_probs=25.0
Q ss_pred EEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022552 219 LYIET---ADRPGLLVEIMKIIADVNVDVESAE 248 (295)
Q Consensus 219 IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~ 248 (295)
|.|.+ .+.||++.++...|.+.|+++....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 44543 4779999999999999999997775
No 265
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=61.88 E-value=9.3 Score=35.53 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=37.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 262 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V 262 (295)
...+|.+--.|-||.|.+|+-+|+..|.||.++-+-- .++++.|.+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~--tevk~Lsrm 121 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL--TEVKALSRM 121 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec--hhhhhhhhc
Confidence 3688899999999999999999999999999988632 235555633
No 266
>PRK14634 hypothetical protein; Provisional
Probab=61.80 E-value=1e+02 Score=26.31 Aligned_cols=61 Identities=16% Similarity=0.015 Sum_probs=41.6
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552 112 LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 174 (295)
Q Consensus 112 pGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~ 174 (295)
..+...+..++..+|+.+++..+...+.+.+-..+|... +|..+ +-+..+.+...|...|+
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~-~g~~v-~lddC~~vSr~is~~LD 67 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRS-SGSDV-SLDDCAGFSGPMGEALE 67 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECC-CCCcc-cHHHHHHHHHHHHHHhc
Confidence 346667778899999999999998887655334455443 55334 23566777777777665
No 267
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=61.34 E-value=59 Score=27.46 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=39.5
Q ss_pred eecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE
Q 022552 94 DQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 142 (295)
Q Consensus 94 ~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~ 142 (295)
..-....-..+.++-.||-|.|+++..++++.++||..-....--++..
T Consensus 65 ~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~A 113 (150)
T COG4492 65 YDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRA 113 (150)
T ss_pred hhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCcee
Confidence 3334455667889999999999999999999999999887766656654
No 268
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.99 E-value=51 Score=22.56 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=25.6
Q ss_pred EEEEEe---CCCccHHHHHHHHHHHCCceEEEEEE
Q 022552 103 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 103 ~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~I 134 (295)
.|.+.+ ++.+|+++++...|++.|++|.--..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 455555 47899999999999999999976544
No 269
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=59.63 E-value=55 Score=22.50 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.2
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEE
Q 022552 108 FGDRLGALIDTMNALKDLGLDVAKG 132 (295)
Q Consensus 108 ~~DrpGLl~~I~~vL~~~glnI~~A 132 (295)
..+++|+.+++.++|++.|+++..-
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i 34 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLI 34 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEE
Confidence 3478999999999999999999865
No 270
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.30 E-value=65 Score=22.67 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=27.1
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEE
Q 022552 218 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHV 262 (295)
Q Consensus 218 ~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~-F~V 262 (295)
.|.+.+. +.||+++++.++|.+.|+++.+ .|.....+ |.|
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~-----~~~s~~~is~vv 45 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVS-----QAANDLNLTFVV 45 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEEE-----EeCCCCeEEEEE
Confidence 3455554 6799999999999998777622 23344444 666
No 271
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=57.28 E-value=70 Score=32.08 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=44.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.+.|.+..+|+||-|+++.++|+.+|+|+.+-.-...+.. ..-.|+|.. +|.. + ..+..+-..|.+
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~--eg~~--~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF--DEAS--D-RKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE--ecCc--c-HHHHHHHHHHHH
Confidence 4667777799999999999999999999987655544332 223588876 4543 2 334444444443
No 272
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=56.85 E-value=59 Score=23.20 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=29.2
Q ss_pred EEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEE
Q 022552 218 LLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHV 262 (295)
Q Consensus 218 ~IeV~a~--DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~-F~V 262 (295)
.|.+.+. -+||++.++.++|.+.|+++..... |...... |.|
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~---~~s~~~is~~V 48 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ---SMRNVDVQFVV 48 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe---cCCeeEEEEEE
Confidence 3444443 3699999999999999999977653 3333343 555
No 273
>PRK14645 hypothetical protein; Provisional
Probab=56.84 E-value=1.3e+02 Score=25.79 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=42.8
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552 110 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 174 (295)
Q Consensus 110 DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~ 174 (295)
+...+-..+..++..+|+.+++..+...++..+-..+|... +|..+. -+..+.+...|...|+
T Consensus 7 ~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~-~~~~v~-lddC~~vSr~is~~LD 69 (154)
T PRK14645 7 NNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRK-DEQPVT-VEDLERASRALEAELD 69 (154)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECC-CCCCcC-HHHHHHHHHHHHHHhc
Confidence 34456777889999999999999998877654334445432 343342 3667777777777665
No 274
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=56.56 E-value=90 Score=24.03 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=46.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 173 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L 173 (295)
...+.+.+.++|+.+.++-++....|+.|..-.+++.- +.+--.|.|.. .+++ +-|.+.|++..
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~~------~lL~~QLeKl~ 68 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRSV------DLLTSQLEKLY 68 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCCh------HHHHHHHHHHc
Confidence 46889999999999999999999999999988887773 33432355532 2332 45666666643
No 275
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=55.42 E-value=76 Score=22.86 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=26.2
Q ss_pred EEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEE
Q 022552 103 IVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVN 135 (295)
Q Consensus 103 ~V~V~---~~DrpGLl~~I~~vL~~~glnI~~A~I~ 135 (295)
.|++. ..+.+|+++++...|++.|+++..-...
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 45664 3478999999999999999999865543
No 276
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.74 E-value=84 Score=23.14 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=36.8
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 108 FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 108 ~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.++.+|+++++.++|+++|+||..-. + +. .--.|.|... ...+.+ +.++.|...|++
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~--~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPD--PNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCc--ccccch-HHHHHHHHHHHh
Confidence 46889999999999999999998653 2 22 2123666542 211322 366666666665
No 277
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=53.24 E-value=65 Score=21.38 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.5
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEEEEEE
Q 022552 103 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 103 ~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I 134 (295)
.|++.+. +++|+++++...|.+.|+++..-..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3556444 8899999999999999999975543
No 278
>PRK06635 aspartate kinase; Reviewed
Probab=53.21 E-value=81 Score=30.64 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEE
Q 022552 99 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKG 132 (295)
Q Consensus 99 ~~~t~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A 132 (295)
++...+.|.+ +++||.++++..+|++.|+||...
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 3455678866 699999999999999999999864
No 279
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.94 E-value=79 Score=22.28 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=26.4
Q ss_pred EEEEEeC--CCccHHHHHHHHHHHCCceEEEEEEEEc
Q 022552 103 IVQLSFG--DRLGALIDTMNALKDLGLDVAKGTVNTE 137 (295)
Q Consensus 103 ~V~V~~~--DrpGLl~~I~~vL~~~glnI~~A~I~T~ 137 (295)
.|.+.|. ..+|+++++..+|++.|++|.--...+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4455554 4689999999999999999976554444
No 280
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=50.95 E-value=26 Score=35.62 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=32.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 138 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~ 138 (295)
.++|.|.||.|+..+|...|...++|+..-.|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 578999999999999999999999999999986653
No 281
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.91 E-value=78 Score=21.63 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=25.9
Q ss_pred EEEEEe---CCCccHHHHHHHHHHHCCceEEEEEE
Q 022552 103 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 103 ~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~I 134 (295)
.|.+.| ++.+|+.+++...|++.|+++.-...
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 455555 37899999999999999999976544
No 282
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=50.83 E-value=1.2e+02 Score=29.72 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=42.6
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeeeeEE-EEEeCCCCCChHHHHHHHHHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKDKF-HVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~-T~g~~a~D~F-~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
....+.+.-+||||=|.++++.+...+-||...+-. ..+.....++ -+.-.+ .++.+++.+.|.+
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~ 390 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND----KEDFAGLLERMAA 390 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 478899999999999999999666666699877665 3332222222 221133 3466777777654
No 283
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=50.63 E-value=1.5e+02 Score=24.95 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 114 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 114 Ll~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
+-..+..++..+|+.+.+..+...+....-..+|... +| + +-+..+.+...|..+|+.
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~-~g--v-~iddc~~~Sr~is~~LD~ 66 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKE-GG--I-DLDDCEEVSRQISAVLDV 66 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECC-CC--C-CHHHHHHHHHHHHHHhcc
Confidence 4456678899999999999999886654323444332 34 3 346778888888777753
No 284
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=50.02 E-value=1e+02 Score=34.09 Aligned_cols=63 Identities=11% Similarity=-0.021 Sum_probs=48.0
Q ss_pred CcEEEEeecC-CCCeEEEEE---EeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeec
Q 022552 88 MPHVLIDQDS-NSDATIVQL---SFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRL 150 (295)
Q Consensus 88 ~p~V~i~~~~-~~~~t~V~V---~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~ 150 (295)
.|.+.+.... +.....+.+ .-+-..|+|..++..+..+|+.+..+.+-+..+++ +-.|+|+..
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~ 283 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGL 283 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecC
Confidence 4667666444 223334444 45667789999999999999999999999998886 578999875
No 285
>PRK00907 hypothetical protein; Provisional
Probab=46.91 E-value=98 Score=24.21 Aligned_cols=65 Identities=8% Similarity=0.091 Sum_probs=44.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE----EcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN----TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~----T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
-.+-+.|.|.+++++...|..++..+.-+....++. +.|.+.--++.|.- .+.++++.|-+.|.+
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a-------ts~eQld~iY~~L~~ 84 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA-------ESREQYDAAHQALRD 84 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE-------CCHHHHHHHHHHHhh
Confidence 347899999999999999999999987766555553 23333333444443 234677777766654
No 286
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=46.34 E-value=35 Score=24.54 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=29.8
Q ss_pred EEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552 218 LLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263 (295)
Q Consensus 218 ~IeV~a~-DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~ 263 (295)
.+.|.+. +.||.+++|...|+++|++|...... .+ .=.|.+.
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~--~~--~isFtv~ 45 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS--PE--EVIFTVD 45 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec--CC--CEEEEEc
Confidence 3444443 56999999999999999999999332 22 3446663
No 287
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=46.16 E-value=38 Score=28.60 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=39.7
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeeeeEEEEE
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKDKFHVS 263 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~-T~g~~a~D~F~V~ 263 (295)
.-..+.+.-.||.|.|+++-.++++.++||...+=+ ...++|.-+..+.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 468899999999999999999999999999877643 3456666666663
No 288
>PRK08639 threonine dehydratase; Validated
Probab=45.99 E-value=89 Score=30.80 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=41.2
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T-~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~ 283 (295)
....+.+.-+||||-|.++.+.+...+-||...+-.- .+.....++..-+ .| .++.+++.+.|.+
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~ 401 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD----AEDYDGLIERMEA 401 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 4788999999999999999995555555888776542 2222222222112 22 2366777777754
No 289
>PRK14640 hypothetical protein; Provisional
Probab=45.84 E-value=1.9e+02 Score=24.55 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhhhccccCcc
Q 022552 114 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIK 193 (295)
Q Consensus 114 Ll~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~~~~~~La~~~~~~~~ 193 (295)
+...+..++..+|+.+.+..+...+.+..-..+|... +|-.+ +.-+.+...|..+|+.
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~-~gv~l---ddC~~vSr~is~~LD~------------------ 65 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGE-NGVSV---ENCAEVSHQVGAIMDV------------------ 65 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECC-CCCCH---HHHHHHHHHHHHHhcc------------------
Q ss_pred CCcccccccccceEEecCCCCceEEEEEEeC--CCc
Q 022552 194 APEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRP 227 (295)
Q Consensus 194 ~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~--DRP 227 (295)
.+.-+..|.|+|+++ |||
T Consensus 66 ----------------~d~i~~~Y~LEVSSPGl~Rp 85 (152)
T PRK14640 66 ----------------EDPITEEYYLEVSSPGLDRP 85 (152)
T ss_pred ----------------cccCCCCeEEEEeCCCCCCc
No 290
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=45.82 E-value=1.2e+02 Score=29.31 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=28.1
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEE
Q 022552 99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAK 131 (295)
Q Consensus 99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~ 131 (295)
.+...|.|.+. ++||+++++..+|.+.|+||..
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 45567778774 7999999999999999999984
No 291
>PRK14647 hypothetical protein; Provisional
Probab=44.62 E-value=2e+02 Score=24.54 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhhhccccCcc
Q 022552 114 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIK 193 (295)
Q Consensus 114 Ll~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~~~~~~La~~~~~~~~ 193 (295)
+-..+..++..+|+.+.+..+...+....-..+|... .|-.+ +..+.+...|...|+.
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~-~gvsl---ddC~~vSr~is~~LD~------------------ 67 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKE-GGVNL---DDCAEVSRELSEILDV------------------ 67 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCC-CCCCH---HHHHHHHHHHHHHHcc------------------
Q ss_pred CCcccccccccceEEecCCCCceEEEEEEeC--CCc
Q 022552 194 APEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRP 227 (295)
Q Consensus 194 ~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~--DRP 227 (295)
.+.-+..|.|+|+++ |||
T Consensus 68 ----------------~d~i~~~Y~LEVSSPG~~Rp 87 (159)
T PRK14647 68 ----------------EDFIPERYTLEVSSPGLDRP 87 (159)
T ss_pred ----------------cccCCCCeEEEEcCCCCCCc
No 292
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=43.96 E-value=97 Score=20.73 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=24.5
Q ss_pred EEEEe---CCCccHHHHHHHHHHHCCceEEEEE
Q 022552 104 VQLSF---GDRLGALIDTMNALKDLGLDVAKGT 133 (295)
Q Consensus 104 V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~ 133 (295)
|+|.+ ++.+|++.++.+.|++.|+++..-.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 45543 5779999999999999999997654
No 293
>PRK02047 hypothetical protein; Provisional
Probab=42.95 E-value=1.5e+02 Score=22.84 Aligned_cols=68 Identities=7% Similarity=-0.026 Sum_probs=44.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+-.+.+.|.+++.+++...+..++..+...+..+.+.+.. .|..-.+.|+-. +.+++++..|-..|.+
T Consensus 14 Pc~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~-----v~s~eq~~~iY~~L~~ 83 (91)
T PRK02047 14 PSDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR-----ATSREQLDNIYRALTG 83 (91)
T ss_pred CCCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE-----ECCHHHHHHHHHHHhh
Confidence 3457899999999999999999999987766665553332 233323333321 2234666666665543
No 294
>PRK12483 threonine dehydratase; Reviewed
Probab=42.52 E-value=1.2e+02 Score=31.06 Aligned_cols=45 Identities=7% Similarity=0.203 Sum_probs=33.5
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEE
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFH 261 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~ 261 (295)
....+.|.-+||||-|.+++++|... ||....-...+.+...++.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v 388 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFV 388 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEE
Confidence 46889999999999999999999988 7766665544433333443
No 295
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=42.46 E-value=25 Score=34.78 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=32.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022552 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 253 (295)
Q Consensus 218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g 253 (295)
.|+|.|.||-||..++-..|...+|++...+|+.-|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 478999999999999999999999999999996544
No 296
>PRK14639 hypothetical protein; Provisional
Probab=40.92 E-value=2.2e+02 Score=23.86 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=37.9
Q ss_pred HHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 118 TMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 118 I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
+-.++..+|+.+.+..+...+....-..+|... .| + +-+..+++...|.+.|+.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~-~g--v-~iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKE-GG--V-NLDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCC-CC--C-CHHHHHHHHHHHHHHhcc
Confidence 446788999999999999887765434555432 34 3 236778888888877764
No 297
>PRK14646 hypothetical protein; Provisional
Probab=39.28 E-value=2.4e+02 Score=23.98 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=51.2
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 022552 228 GLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295 (295)
Q Consensus 228 GLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~~~~~~~~~~ 295 (295)
-+..-+..++.++|+.+..+++...|....=..||.. +|.-++=..++.+-+.+-..|+....-.++|
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y 76 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSY 76 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCe
Confidence 3556678889999999999999998876655667754 4566777788999999999998544433444
No 298
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.11 E-value=33 Score=25.83 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.8
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEE
Q 022552 108 FGDRLGALIDTMNALKDLGLDVAKG 132 (295)
Q Consensus 108 ~~DrpGLl~~I~~vL~~~glnI~~A 132 (295)
.++.+|..+++...|++.|+||..-
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 4788999999999999999999865
No 299
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.76 E-value=1.2e+02 Score=20.18 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=24.5
Q ss_pred EEEEe---CCCccHHHHHHHHHHHCCceEEEEE
Q 022552 104 VQLSF---GDRLGALIDTMNALKDLGLDVAKGT 133 (295)
Q Consensus 104 V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~ 133 (295)
|+|.+ .+.+|++.++...|.+.|+++..-.
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45544 4779999999999999999997654
No 300
>PRK14638 hypothetical protein; Provisional
Probab=37.60 E-value=2.5e+02 Score=23.72 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552 114 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 175 (295)
Q Consensus 114 Ll~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~ 175 (295)
+-..+..++..+|+.+++..+...+.+..-..+|... +|. + +-+..+++...|...|+.
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~-~G~-v-~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNP-VGY-V-SVRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECC-CCC-c-CHHHHHHHHHHHHHHhcc
Confidence 4456677889999999999999887655334445432 442 3 236778888888887763
No 301
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=35.94 E-value=2.4e+02 Score=32.93 Aligned_cols=203 Identities=17% Similarity=0.184 Sum_probs=107.3
Q ss_pred CCcEEEEeecCCCCeEEEEEEeC-CC--ccHHHHHHHHHHHC-CceEEEEEEEEcCC-eEEEEEEEeecCCCCCC-CChH
Q 022552 87 PMPHVLIDQDSNSDATIVQLSFG-DR--LGALIDTMNALKDL-GLDVAKGTVNTEGS-VKQTKFFITRLDTGRKV-EDPD 160 (295)
Q Consensus 87 ~~p~V~i~~~~~~~~t~V~V~~~-Dr--pGLl~~I~~vL~~~-glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~-~d~~ 160 (295)
++..+-+..+....+.-+.|+-| |+ ..+-.+|-..|.+. +....+-+...... -+---|.+... .+... .+.
T Consensus 327 ~rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~-~~~~~~~d~- 404 (1528)
T PF05088_consen 327 RRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVD-PGHEPDIDV- 404 (1528)
T ss_pred CceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeC-CCCCCCCCH-
Confidence 34566667777777777777654 44 34777888887754 44444444333222 22233666553 44432 232
Q ss_pred HHHHHHHHHHHhhcccCCCchh------------Hhhhcc--ccC-----ccCCccc-cc--------ccccceEEecCC
Q 022552 161 LLERIRLTIINNLLKYHPESSE------------QLAMGE--AFG-----IKAPEKK-LD--------VDIATHIHVKED 212 (295)
Q Consensus 161 ~le~L~~~L~~~L~~~~~~~~~------------~La~~~--~~~-----~~~~~r~-~~--------~~~~~~V~i~~~ 212 (295)
+.|+..|.++...+.-.+.. .+.... .+. ...+.+. .+ -..+..+.+...
T Consensus 405 --~~le~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~ 482 (1528)
T PF05088_consen 405 --EALEARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRP 482 (1528)
T ss_pred --HHHHHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEecc
Confidence 44555554433221111111 110000 000 0001100 00 012233444322
Q ss_pred ---CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE---ec-CC-eeeeEEEEEe-CCCCCChH-HHHHHHHHHH
Q 022552 213 ---GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID---TE-GL-VAKDKFHVSY-GGAALNSS-LSQVLVNCLR 282 (295)
Q Consensus 213 ---~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~---T~-g~-~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~ 282 (295)
+.....+.|....+|..|++|.-+|..+|+.|..-.-. .. |. .-...|++.. .+..+... ..+.+++++.
T Consensus 483 ~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 483 AGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFE 562 (1528)
T ss_pred CCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHH
Confidence 23479999999999999999999999999999877543 32 22 2444588876 55555544 5677777776
Q ss_pred HHcCCCCCccCC
Q 022552 283 YYLRRPETDIDS 294 (295)
Q Consensus 283 ~~L~~~~~~~~~ 294 (295)
+... +..|-|+
T Consensus 563 ~v~~-g~~e~D~ 573 (1528)
T PF05088_consen 563 AVWN-GRAENDG 573 (1528)
T ss_pred HHhc-CCCCCCh
Confidence 6644 3344443
No 302
>PRK09034 aspartate kinase; Reviewed
Probab=35.94 E-value=1.4e+02 Score=29.90 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.6
Q ss_pred ceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEE
Q 022552 215 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESA 247 (295)
Q Consensus 215 ~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A 247 (295)
+-+.|+|.+ .++||++++|..+|+++|++|...
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i 342 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM 342 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 356777774 688999999999999999999987
No 303
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=35.18 E-value=69 Score=22.93 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=24.7
Q ss_pred EEEEE-eCCCccHHHHHHHHHHHCCceEEEE
Q 022552 103 IVQLS-FGDRLGALIDTMNALKDLGLDVAKG 132 (295)
Q Consensus 103 ~V~V~-~~DrpGLl~~I~~vL~~~glnI~~A 132 (295)
.|+|. .++.+|..++|.+.|++.|+||---
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 45555 3466999999999999999999876
No 304
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=34.65 E-value=3e+02 Score=25.09 Aligned_cols=65 Identities=6% Similarity=0.073 Sum_probs=42.9
Q ss_pred ceEEEEEEeCCCcc--hHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHH
Q 022552 215 KRSLLYIETADRPG--LLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCL 281 (295)
Q Consensus 215 ~~t~IeV~a~DRPG--LL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V~~~G~~l~~~~~~~L~~~L 281 (295)
.++.++|.+.+.++ +...+.+.|.+.++.+.+.++...+ +..+=...+...+. .+..++++...|
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~--~~~~le~iv~~L 209 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHAD--YRKTRELIISRI 209 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCC--chhhHHHHHHHH
Confidence 36788899888665 5899999999999999999997653 33332233322222 234555555554
No 305
>PRK08841 aspartate kinase; Validated
Probab=33.87 E-value=2.6e+02 Score=27.46 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=42.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 287 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~ 287 (295)
+...+.+.+...||+++++.++|.+.||+|.... + ++ ..=.|.|. ....++..+.|++.+..
T Consensus 317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~--~-s~-~~is~vv~-------~~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS--T-EP-QSSMLVLD-------PANVDRAANILHKTYVT 378 (392)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE--C-CC-cEEEEEEe-------HHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999995544 2 33 33335562 12334555566655443
No 306
>PRK14634 hypothetical protein; Provisional
Probab=33.74 E-value=3e+02 Score=23.42 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=49.7
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 022552 228 GLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295 (295)
Q Consensus 228 GLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~~~~~~~~~~ 295 (295)
-+-.-+..++.++|+.+...++...|....=..||.. +|..++=..++.+-+.+-..|+....-.+.|
T Consensus 8 ~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~~~Y 76 (155)
T PRK14634 8 DLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLTEAY 76 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCCCCe
Confidence 3445566778899999999999888766555566654 6766887789999999999998543333333
No 307
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.16 E-value=3.1e+02 Score=23.45 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552 112 LGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 174 (295)
Q Consensus 112 pGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~ 174 (295)
..+..-+-.++..+|+.+++..+...+.+ ++- .++.. .|. + +=+..+++...+...|+
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lr-I~id~--~g~-v-~lddC~~vSr~is~~LD 66 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLR-IYIDK--EGG-V-TLDDCADVSRAISALLD 66 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEE-EEeCC--CCC-C-CHHHHHHHHHHHHHHhc
Confidence 45667777889999999999999999864 443 33433 232 2 23566777777776664
No 308
>PRK00341 hypothetical protein; Provisional
Probab=33.05 E-value=2.3e+02 Score=21.91 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=41.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc--CCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~--~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.+.+.|.|.+.+++...|..++..+. .+....+.+. .+|..-.+.++-. +.+++++..|-..|.+
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~-----~~s~~q~~~iy~~L~~ 83 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIV-----ATDEDQLQDINSALRA 83 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHhh
Confidence 38899999999999999999998876 6655655322 2333222333321 2234666666666543
No 309
>PLN02550 threonine dehydratase
Probab=32.91 E-value=2.5e+02 Score=29.35 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=38.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~ 283 (295)
...+.|.-+||||-|.+++++|... ||...+-.-.. +.+.=.+-|.-.| .++.++|.++|.+
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~l~~ 479 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHT----EQELQALKKRMES 479 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 5789999999999999999999987 66555443322 2222222232132 2355666666543
No 310
>PRK08210 aspartate kinase I; Reviewed
Probab=31.59 E-value=89 Score=30.42 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=29.6
Q ss_pred ceEEEEEEeCCC-cchHHHHHHHHHhCCceEEEEEEE
Q 022552 215 KRSLLYIETADR-PGLLVEIMKIIADVNVDVESAEID 250 (295)
Q Consensus 215 ~~t~IeV~a~DR-PGLL~dIt~~L~~~gI~I~~A~I~ 250 (295)
+-..++|...+. ||.+++|..+|.++||+|......
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 456777776655 999999999999999999988443
No 311
>PRK09224 threonine dehydratase; Reviewed
Probab=31.58 E-value=2.8e+02 Score=28.12 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=39.8
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR 282 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~ 282 (295)
....+.|.-+||||=|.+++++|. +-||...+-.-.+..-..+|..-. .+.. .+.++|.+.|.
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~---~~~~~i~~~L~ 390 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQ---EERAEIIAQLR 390 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChh---hHHHHHHHHHH
Confidence 367899999999999999999999 566665554433433333444322 2211 12556666654
No 312
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=30.93 E-value=2e+02 Score=21.54 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=36.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCC
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV 156 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~ 156 (295)
.....+.+...| +..+...|..+|+++........+.+ ..|++.|+ +|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DP-dG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADP-EGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECC-CCCEE
Confidence 455667788888 67778889999999987654332233 36889997 78654
No 313
>PRK14638 hypothetical protein; Provisional
Probab=30.92 E-value=3.3e+02 Score=23.03 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 022552 231 VEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295 (295)
Q Consensus 231 ~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~~~~~~~~~ 295 (295)
.-+..++...|+.+...++...|..-.=..+|...+..++=..++.+-..|...|+....-.++|
T Consensus 12 ~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y 76 (150)
T PRK14638 12 KEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSY 76 (150)
T ss_pred HHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccccccCCce
Confidence 35667788999999999999877654445666444444777789999999999998543323333
No 314
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=30.75 E-value=2e+02 Score=20.39 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=24.2
Q ss_pred EEEEEeC--CCccHHHHHHHHHHHCCceEEEEE
Q 022552 103 IVQLSFG--DRLGALIDTMNALKDLGLDVAKGT 133 (295)
Q Consensus 103 ~V~V~~~--DrpGLl~~I~~vL~~~glnI~~A~ 133 (295)
.|.+.+. .++|+.+++..+|.+.|+++..-.
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~ 36 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAH 36 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEE
Confidence 4555553 268999999999999999997543
No 315
>PRK14639 hypothetical protein; Provisional
Probab=30.57 E-value=3.2e+02 Score=22.81 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=46.0
Q ss_pred HHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 022552 233 IMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295 (295)
Q Consensus 233 It~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~~~~~~~~~ 295 (295)
+-.++.++|+.+...+....|....=..+|...|. ++-..++.+.+.+-++|+....-.++|
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g-v~iddC~~vSr~is~~LD~~d~i~~~Y 64 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG-VNLDDCERLSELLSPIFDVEPPVSGEY 64 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHHhccccccCCCe
Confidence 34578899999999999988776555666744333 777789999999999998654444444
No 316
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=30.57 E-value=3.1e+02 Score=27.85 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=41.2
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 022552 215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 283 (295)
Q Consensus 215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~ 283 (295)
....+.|.-+||||=|.+++++|... ||...+-.-.+.....+|..-. .| .+++++|.+.|.+
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~~----~~~~~~l~~~L~~ 387 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLSN----PQERQEILARLND 387 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 47889999999999999999999985 5555544433333333444322 21 2366777777653
No 317
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=30.24 E-value=2.1e+02 Score=20.63 Aligned_cols=61 Identities=5% Similarity=0.131 Sum_probs=40.5
Q ss_pred EEEEeCCC-ccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 104 VQLSFGDR-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 104 V~V~~~Dr-pGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
|...+... ..+++++++.+ ....||..|.|....+...-.+.+.- .|. ++..++..+.|++
T Consensus 7 l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l--~g~----~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 7 LTFTGNSAQEPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILEL--PGD----DEEIEKAIAYLRE 68 (76)
T ss_dssp EEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEE--ES-----HHHHHHHHHHHHH
T ss_pred EEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEE--ECC----HHHHHHHHHHHHH
Confidence 44444343 33788888776 78899999999999998877787776 343 3445555555543
No 318
>PRK14636 hypothetical protein; Provisional
Probab=30.11 E-value=3.7e+02 Score=23.40 Aligned_cols=63 Identities=10% Similarity=-0.074 Sum_probs=47.1
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 022552 226 RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 288 (295)
Q Consensus 226 RPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~~~ 288 (295)
-+-+-.-+..++..+|+.+...++...|....=..||.+ .|..++=..|+.+.+.|-..|+..
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~ 67 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDEL 67 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccC
Confidence 344556677889999999999999887765544555644 345577778999999999999854
No 319
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=28.11 E-value=15 Score=28.83 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=35.0
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCC
Q 022552 223 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPET 290 (295)
Q Consensus 223 a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~~~~ 290 (295)
..+|+.++.+|.+++.+.|. |||.++| ++.+.++++.+..++....|..
T Consensus 10 ~~~~~~~~~~l~~A~~~~GF-----------------f~l~nhG--i~~~l~~~~~~~~~~fF~lp~e 58 (116)
T PF14226_consen 10 PADREEVAEQLRDACEEWGF-----------------FYLVNHG--IPQELIDRVFAAAREFFALPLE 58 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTSE-----------------EEEESSS--SSHHHHHHHHHHHHHHHCSHHH
T ss_pred CccHHHHHHHHHHHHHhCCE-----------------EEEeccc--ccchhhHHHHHHHHHHHHhhHH
Confidence 45678899999999999885 7887776 4466666776666666554443
No 320
>PRK09084 aspartate kinase III; Validated
Probab=26.44 E-value=3.3e+02 Score=27.17 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=29.8
Q ss_pred ceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022552 215 KRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 248 (295)
Q Consensus 215 ~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~ 248 (295)
+-.+|+|.+. +.||++++|..+|+++||+|....
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ 341 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT 341 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe
Confidence 4678888755 689999999999999999999886
No 321
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.22 E-value=2.2e+02 Score=19.57 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=26.7
Q ss_pred EEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEEE
Q 022552 217 SLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHVS 263 (295)
Q Consensus 217 t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~-F~V~ 263 (295)
.++.+.|. ++||++.++.++|.+.++.+ -+.|...... |.|.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i~i~~-----i~~~~s~~~is~~V~ 47 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDINVRM-----ICYGASNHNLCFLVK 47 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhCCeEE-----EEEecCccEEEEEEe
Confidence 34556665 78999999999998644433 3344444443 6663
No 322
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=25.65 E-value=90 Score=27.00 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=29.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEE
Q 022552 101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I 134 (295)
...+.|.-+|+||-|..+.+=|+..|.||.+--=
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH 38 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIH 38 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEe
Confidence 4567889999999999999999999999996433
No 323
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=25.42 E-value=4.3e+02 Score=26.00 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=29.0
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEE
Q 022552 99 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGT 133 (295)
Q Consensus 99 ~~~t~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~ 133 (295)
.+...|.|.+ .+.||+++++...|+..|+||..-.
T Consensus 376 ~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 376 KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 4566788864 4889999999999999999997654
No 324
>PRK14637 hypothetical protein; Provisional
Probab=24.96 E-value=4.3e+02 Score=22.40 Aligned_cols=60 Identities=8% Similarity=0.052 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 022552 227 PGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 287 (295)
Q Consensus 227 PGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~ 287 (295)
-|.-..+..++.++|+.+...++...|..-.=..+|...|. ++-..++++-+.+-.+|+.
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g-V~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG-VGLDDCARVHRILVPRLEA 67 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHhcc
Confidence 57788899999999999999999988766444455543332 6667888999988888875
No 325
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=24.83 E-value=3.3e+02 Score=22.42 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 022552 233 IMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 287 (295)
Q Consensus 233 It~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~ 287 (295)
|..++..+|+.+...++...|+...=..++..++. ++=..++++...+...|..
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~g-v~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKDGG-VSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS----HHHHHHHHHHHGGGTTT
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHcc
Confidence 45678899999999999998876444444433444 7777899999999998887
No 326
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.59 E-value=2.6e+02 Score=19.47 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=22.2
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEE
Q 022552 103 IVQLSFG---DRLGALIDTMNALKDLGLDVA 130 (295)
Q Consensus 103 ~V~V~~~---DrpGLl~~I~~vL~~~glnI~ 130 (295)
.|.+.+. +.+|+++++.++|.+.|+++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 3556654 789999999999999877763
No 327
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=23.46 E-value=75 Score=23.33 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=34.0
Q ss_pred CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 109 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 109 ~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
.-.+|+++++.+.|+++|+||..-. + ++ .--.|.+.. . .+.+ +.++.|...|++
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~---~-~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHM---E-NAED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeh---h-hcCh-HHHHHHHHHHHH
Confidence 3458999999999999999998653 2 22 112355543 2 1211 256666666655
No 328
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=22.87 E-value=4.4e+02 Score=21.84 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=28.9
Q ss_pred CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEE
Q 022552 98 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGT 133 (295)
Q Consensus 98 ~~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~ 133 (295)
+.+...+.+.++ |-+|+++.+.+.|+++|+-|.--.
T Consensus 60 ~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavS 98 (128)
T COG3603 60 EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVS 98 (128)
T ss_pred cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEE
Confidence 456666776654 889999999999999999998544
No 329
>PRK00907 hypothetical protein; Provisional
Probab=22.51 E-value=2.9e+02 Score=21.58 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=40.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE----EecCCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552 216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEI----DTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLR 282 (295)
Q Consensus 216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I----~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~ 282 (295)
.+.+.|.|.++++|...|..++..+.-......+ +..|.-..=.+.|+-.+ .++++.|=++|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats----~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAES----REQYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 4899999999999999999999988765554444 44444343334442222 235555555543
No 330
>PRK06291 aspartate kinase; Provisional
Probab=21.97 E-value=5.5e+02 Score=25.61 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEE
Q 022552 99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNT 136 (295)
Q Consensus 99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T 136 (295)
.+...|.|.+. +++|+.+++..+|.+.|+||..-...+
T Consensus 396 ~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs 436 (465)
T PRK06291 396 KDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS 436 (465)
T ss_pred CCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence 45567888875 799999999999999999998544333
No 331
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=21.88 E-value=4.8e+02 Score=21.88 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCC
Q 022552 229 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPE 289 (295)
Q Consensus 229 LL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~~~ 289 (295)
+-.-+..++..+|+.+...++...|..-.=..+|...| .++=..++.+-+.+..+|+...
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~-gv~iddc~~~Sr~is~~LD~~d 68 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEG-GIDLDDCEEVSRQISAVLDVED 68 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCC-CCCHHHHHHHHHHHHHHhcccc
Confidence 34456778899999999999998766544445553322 2566689999999999998543
No 332
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=21.43 E-value=4e+02 Score=28.94 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=28.4
Q ss_pred ceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEE
Q 022552 215 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESA 247 (295)
Q Consensus 215 ~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A 247 (295)
+-++|+|.+ .+.||++.+|...|+++||+|...
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I 356 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI 356 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE
Confidence 467888864 468999999999999999999877
No 333
>PRK04998 hypothetical protein; Provisional
Probab=21.12 E-value=3.8e+02 Score=20.39 Aligned_cols=68 Identities=9% Similarity=-0.049 Sum_probs=39.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 171 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~ 171 (295)
+-.+.+.|.+++.+++...|..++..+.-.-..-++-....|..-.+.|+-. +.+++++..|-+.|.+
T Consensus 13 Pc~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~-----v~s~eq~~~iY~~L~~ 80 (88)
T PRK04998 13 PCSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITIT-----ATSIEQVETLYEELAK 80 (88)
T ss_pred CCCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHhc
Confidence 4457899999999999999999998773322111122223343323444331 2334566665555543
No 334
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=20.92 E-value=1.9e+02 Score=21.45 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.8
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEE
Q 022552 223 TADRPGLLVEIMKIIADVNVDVESA 247 (295)
Q Consensus 223 a~DRPGLL~dIt~~L~~~gI~I~~A 247 (295)
....+|+-++|..+|++++++|.+-
T Consensus 11 MvG~~g~d~~i~~~l~~~~v~ii~K 35 (71)
T cd04910 11 MVGEVGYDLEILELLQRFKVSIIAK 35 (71)
T ss_pred ccCChhHHHHHHHHHHHcCCeEEEE
Confidence 3456899999999999999999876
No 335
>PRK14645 hypothetical protein; Provisional
Probab=20.87 E-value=5.3e+02 Score=21.94 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=47.2
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCC
Q 022552 228 GLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPE 289 (295)
Q Consensus 228 GLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~~~~ 289 (295)
-+-..+..++.++|+.+...++...|..-.=..+|.. +|..++=..++.+-..+-..|+...
T Consensus 10 ~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d 72 (154)
T PRK14645 10 DLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLD 72 (154)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccc
Confidence 3556678889999999999999887755444455643 4667887889999999998888543
No 336
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=20.45 E-value=1.3e+02 Score=30.04 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=30.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEE
Q 022552 103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I 134 (295)
.+.|.|.||-||.-++-..|...++|+....|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi 33 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI 33 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceee
Confidence 57899999999999999999999999998888
No 337
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.23 E-value=1.4e+02 Score=28.59 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=40.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCcc
Q 022552 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDI 292 (295)
Q Consensus 217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~~~~~~ 292 (295)
=+|++...++..++.+|.+++.+.|. |||.++|-+ .+..+++.+..++.-..|..++
T Consensus 39 PvIDls~~~~~~~~~~l~~Ac~~~GF-----------------f~v~nHGI~--~~l~~~~~~~~~~fF~LP~e~K 95 (337)
T PLN02639 39 PVIDLGSPDRAQVVQQIGDACRRYGF-----------------FQVINHGVS--AELVEKMLAVAHEFFRLPVEEK 95 (337)
T ss_pred CeEECCCccHHHHHHHHHHHHHhCCE-----------------EEEEcCCCC--HHHHHHHHHHHHHHhcCCHHHH
Confidence 35566556788899999999999996 788666643 5566666666666666555443
No 338
>PRK08841 aspartate kinase; Validated
Probab=20.21 E-value=1.6e+02 Score=28.96 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEE
Q 022552 99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAK 131 (295)
Q Consensus 99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~ 131 (295)
.+...|.+.+...||+.+++..+|.+.|+||..
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~ 348 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ 348 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE
Confidence 456789999999999999999999999999954
No 339
>PLN02551 aspartokinase
Probab=20.17 E-value=6e+02 Score=26.04 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=29.1
Q ss_pred CCeEEEEEEeC--CCccHHHHHHHHHHHCCceEEEEEE
Q 022552 99 SDATIVQLSFG--DRLGALIDTMNALKDLGLDVAKGTV 134 (295)
Q Consensus 99 ~~~t~V~V~~~--DrpGLl~~I~~vL~~~glnI~~A~I 134 (295)
.+...|.|.+. .++|+++++..+|++.|+||..-..
T Consensus 443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsq 480 (521)
T PLN02551 443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQ 480 (521)
T ss_pred CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEe
Confidence 45667777754 6899999999999999999976443
Done!