Query 022553
Match_columns 295
No_of_seqs 248 out of 1085
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 07:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 2.2E-24 7.4E-29 160.8 7.6 60 105-164 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 90.1 0.33 1.1E-05 37.3 4.3 28 101-130 3-31 (77)
3 1u3e_M HNH homing endonuclease 88.7 0.0078 2.7E-07 51.2 -6.4 56 87-146 91-146 (174)
4 1z1b_A Integrase; protein-DNA 81.4 2.4 8.1E-05 37.6 5.9 42 107-152 14-55 (356)
5 3jtz_A Integrase; four strande 67.0 11 0.00039 28.7 5.7 43 110-152 29-75 (88)
6 3ju0_A Phage integrase; four s 49.5 29 0.00098 27.5 5.4 43 110-152 29-75 (108)
7 2ftc_I Mitochondrial ribosomal 30.7 69 0.0024 25.8 4.9 36 117-154 80-115 (118)
8 1x60_A Sporulation-specific N- 28.5 46 0.0016 23.7 3.2 23 128-150 46-68 (79)
9 1uta_A FTSN, MSGA, cell divisi 23.9 91 0.0031 22.4 4.1 24 127-150 45-68 (81)
10 1b69_A Protein (integrase); in 23.9 1.4E+02 0.0049 22.1 5.2 24 103-126 9-32 (69)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.90 E-value=2.2e-24 Score=160.77 Aligned_cols=60 Identities=67% Similarity=1.129 Sum_probs=56.9
Q ss_pred ccccEEeCCCCcEEEEEecCCC-CeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 022553 105 KYRGVRMRPWGKWAAEIRDPFQ-RTRVWLGTFETAEEAALVYDQAAIRLKGPHAQTNFLRP 164 (295)
Q Consensus 105 ~yRGVr~r~~GKW~AeIr~p~~-~kriwLGTFdT~EEAA~AYD~Aa~~l~G~~A~~NF~~~ 164 (295)
+||||++++||||+|+|++|.. |+++|||||+|+||||+|||.|++.++|..|.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 7999998999999999999974 79999999999999999999999999999999999864
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=90.11 E-value=0.33 Score=37.32 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCCCccccE-EeCCCCcEEEEEecCCCCeEE
Q 022553 101 SYDNKYRGV-RMRPWGKWAAEIRDPFQRTRV 130 (295)
Q Consensus 101 ~~~S~yRGV-r~r~~GKW~AeIr~p~~~kri 130 (295)
..+|+|.|| |..+.+.|.|.-.+ +|+|.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 457999999 67788999999998 56443
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=88.71 E-value=0.0078 Score=51.22 Aligned_cols=56 Identities=7% Similarity=-0.002 Sum_probs=36.4
Q ss_pred ccCcccccccCCCCCCCCccccEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHH
Q 022553 87 KDRSIPLKKRVGGRSYDNKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYD 146 (295)
Q Consensus 87 ~~r~~~~~~~~~~~~~~S~yRGVr~r~~GKW~AeIr~p~~~kriwLGTFdT~EEAA~AYD 146 (295)
+++.++++++.....+ ..++||.....++|.+.|.. . +.++||.|.|.+|||++|.
T Consensus 91 ~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 91 VTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp ECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred CCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 4555554443322222 12467733445779999988 5 5678999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=81.37 E-value=2.4 Score=37.57 Aligned_cols=42 Identities=21% Similarity=0.107 Sum_probs=32.3
Q ss_pred ccEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHHHHHHHh
Q 022553 107 RGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRL 152 (295)
Q Consensus 107 RGVr~r~~GKW~AeIr~p~~~kriwLGTFdT~EEAA~AYD~Aa~~l 152 (295)
.||++++.|.|..+.+. .|+++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 47888888999876654 788999996 9999887776655544
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=67.00 E-value=11 Score=28.67 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=31.3
Q ss_pred EeCCCC--cEEEEEecCCCCeEEeecCCC--CHHHHHHHHHHHHHHh
Q 022553 110 RMRPWG--KWAAEIRDPFQRTRVWLGTFE--TAEEAALVYDQAAIRL 152 (295)
Q Consensus 110 r~r~~G--KW~AeIr~p~~~kriwLGTFd--T~EEAA~AYD~Aa~~l 152 (295)
+-++.| .|.-+.+.....+++-||.|. |+++|....+.+...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 445555 488888874445778999996 7888888877776665
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=49.55 E-value=29 Score=27.46 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=30.5
Q ss_pred EeCCCC--cEEEEEecCCCCeEEeecCCC--CHHHHHHHHHHHHHHh
Q 022553 110 RMRPWG--KWAAEIRDPFQRTRVWLGTFE--TAEEAALVYDQAAIRL 152 (295)
Q Consensus 110 r~r~~G--KW~AeIr~p~~~kriwLGTFd--T~EEAA~AYD~Aa~~l 152 (295)
+-.+.| .|.-+.+.....+++-||.|. |+.+|....+.+...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 445555 388888874344778899996 7888887777666655
No 7
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=30.72 E-value=69 Score=25.82 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=30.4
Q ss_pred EEEEEecCCCCeEEeecCCCCHHHHHHHHHHHHHHhcC
Q 022553 117 WAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKG 154 (295)
Q Consensus 117 W~AeIr~p~~~kriwLGTFdT~EEAA~AYD~Aa~~l~G 154 (295)
|+|.|.. +..-+-++...+++.|..|...|+.+|=+
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999997 77777777778899999999999988743
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=28.50 E-value=46 Score=23.72 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=18.7
Q ss_pred eEEeecCCCCHHHHHHHHHHHHH
Q 022553 128 TRVWLGTFETAEEAALVYDQAAI 150 (295)
Q Consensus 128 kriwLGTFdT~EEAA~AYD~Aa~ 150 (295)
-|+++|-|.+.++|..+..+...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57899999999999988765444
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=23.93 E-value=91 Score=22.42 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=19.3
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHH
Q 022553 127 RTRVWLGTFETAEEAALVYDQAAI 150 (295)
Q Consensus 127 ~kriwLGTFdT~EEAA~AYD~Aa~ 150 (295)
--|+.+|-|.+.++|..+..+...
T Consensus 45 ~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 45 WNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SEEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 467899999999999988765444
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=23.89 E-value=1.4e+02 Score=22.10 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=19.8
Q ss_pred CCccccEEeCCCCcEEEEEecCCC
Q 022553 103 DNKYRGVRMRPWGKWAAEIRDPFQ 126 (295)
Q Consensus 103 ~S~yRGVr~r~~GKW~AeIr~p~~ 126 (295)
.--+.|+.+|..|+|+..+.+.++
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~~G 32 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDSFG 32 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECTTS
T ss_pred CccCCCeEEccCCcEEEEEEcCCC
Confidence 356789999999999999998533
Done!