BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022555
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C920|KDSB_ARATH 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial
OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1
Length = 290
Score = 499 bits (1286), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/279 (88%), Positives = 261/279 (93%)
Query: 17 KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
K+WIV+GI+AG AIA A+GARAYLGRSK FRSRVVGIIPAR+ASSRFEGKPLV ILGKPM
Sbjct: 12 KTWIVNGILAGTAIAAAIGARAYLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPM 71
Query: 77 IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
IQRTWERSKLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEK
Sbjct: 72 IQRTWERSKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEK 131
Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
KYD+VVNIQGDEPLIEPEIIDGVVKALQ PDAVFSTAVTSLKPED DPNRVKCVVDN
Sbjct: 132 KYDVVVNIQGDEPLIEPEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNR 191
Query: 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK 256
GYAIYFSRGLIPYNKSGKVNP FPY+LHLGIQS+DS FLK+Y L PTPLQ EEDLEQLK
Sbjct: 192 GYAIYFSRGLIPYNKSGKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLK 251
Query: 257 VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
VLENGYKMKVIKVDHEAHGVD P+DVEKIES MRERN+S
Sbjct: 252 VLENGYKMKVIKVDHEAHGVDTPDDVEKIESLMRERNMS 290
>sp|Q6MD00|KDSB_PARUW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia
amoebophila (strain UWE25) GN=kdsB PE=3 SV=1
Length = 259
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/248 (48%), Positives = 159/248 (64%), Gaps = 3/248 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++GIIPAR+ S+RF GKPL +ILGK ++QRT+E S A+ L L+VATDDE+I E +
Sbjct: 9 QIIGIIPARYGSTRFPGKPLASILGKTLLQRTYENSLRASALSDLIVATDDERIFEHVRS 68
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166
F V+MTSE C GT+R E L + +VNIQGDEP + P I+ V+AL
Sbjct: 69 FNGKVVMTSEQCPTGTDRLAEVLSLYPEWMHATAIVNIQGDEPCLNPLTINLAVQALVND 128
Query: 167 PDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 225
P ST VT L E+A + + VKCV+D G A+YFSR LIP NK+ Y HL
Sbjct: 129 PQGQVSTIVTPLLDEEEAKNSSIVKCVMDQQGNALYFSRALIPSNKTNSFKNGAIYFRHL 188
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 285
G+ Y +F+ Y L TPLQLEEDLEQLKVLE+GY++KV VD GVD PED+ K+
Sbjct: 189 GLYVYRPSFIINYQKLPSTPLQLEEDLEQLKVLEHGYRIKVAIVDQANIGVDTPEDIHKV 248
Query: 286 ESFMRERN 293
E ++ ++N
Sbjct: 249 EEWLCKQN 256
>sp|Q9PKL1|KDSB_CHLMU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=kdsB PE=3 SV=2
Length = 254
Score = 207 bits (527), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 157/245 (64%), Gaps = 8/245 (3%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+PAR+ SSRF GKPL ILGK +IQR++E + + +LD +VVATDD++I +
Sbjct: 7 SKRVGILPARWGSSRFPGKPLAKILGKTLIQRSYENALTSRSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MT ESC NGTER EA+ + + +IVVNIQGDEP + P IIDG+V+ L+ P
Sbjct: 67 EFGGLCVMTCESCANGTERVEEAVSQHFPQAEIVVNIQGDEPCLSPSIIDGLVEMLEGNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
+T VT ++ P+ ++VKCV D G A+YFSR +IP N P LH+G
Sbjct: 127 AIDIATPVTETVDPDAILTNHKVKCVFDKTGRALYFSRSVIPNNFKRST----PIYLHIG 182
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDVEK 284
+ ++ FL Y + P+ L L EDLEQL+VLE+G + V V A G VD PED+ K
Sbjct: 183 VYAFRRAFLSEYVKIPPSSLSLAEDLEQLRVLESGRSIYV-HVVQNATGPSVDYPEDISK 241
Query: 285 IESFM 289
+E ++
Sbjct: 242 VEQYL 246
>sp|A6L9D4|KDSB_PARD8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=kdsB PE=3 SV=1
Length = 251
Score = 207 bits (527), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 111/252 (44%), Positives = 156/252 (61%), Gaps = 11/252 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+ +GIIPAR+AS+RF GKPL ++ GKPMIQR +E+ K LD + VATDD +I +
Sbjct: 3 KFIGIIPARYASTRFPGKPLADMNGKPMIQRVYEQVK--DVLDSVCVATDDIRIENAVKA 60
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG V+MTS+ R+GT+RC EA QK+ + YD++VNIQGDEP I PE I +K A +
Sbjct: 61 FGGQVVMTSDQHRSGTDRCYEAYQKIGEGYDVIVNIQGDEPFIHPEQIQ-TIKTCFADAN 119
Query: 169 AVFSTAVTSLKPED-----AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP--- 220
+T V + +D F+PN K V++ + A+YFSR +IPY + K P
Sbjct: 120 TQIATLVKPFRSDDDFESSLFNPNSPKVVLNKNNEAMYFSRSIIPYIRGKKYTEWLPSHT 179
Query: 221 YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPE 280
+ H+G+ +Y + LK L + L+L E LEQL+ LENGYK+KV + E G+D PE
Sbjct: 180 FYKHIGLYAYRAQVLKEITQLPQSALELAESLEQLRWLENGYKIKVGITEQETIGIDTPE 239
Query: 281 DVEKIESFMRER 292
D+EK +F+ R
Sbjct: 240 DMEKALAFLANR 251
>sp|Q8RFA8|KDSB_FUSNN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=kdsB PE=3 SV=1
Length = 245
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 157/247 (63%), Gaps = 6/247 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+ +GIIPAR++S+R EGKPL I G MI+ ++R+K + LD L+VATDDE+I
Sbjct: 2 KFLGIIPARYSSTRLEGKPLKMIEGHTMIEWVYKRAK-KSNLDSLIVATDDERIYNEVIN 60
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG IMTS++ NGT R E +K+ +YD ++NIQGDEPLIE E+I+ +++ + D
Sbjct: 61 FGGQAIMTSKNHTNGTSRIAEVCEKM-TEYDTIINIQGDEPLIEYEMINSLIETFKENKD 119
Query: 169 AVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
+T L E+ +PN VK V D + YAIYFSR +IPY + N Y H+GI
Sbjct: 120 LKMATLKHKLLNKEEIKNPNNVKVVCDKNDYAIYFSRSVIPYPRK---NGNISYFKHIGI 176
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES 287
Y +F+ Y + TPL+ E LEQL+VLENGYK+KV++ H GVD E++E++ +
Sbjct: 177 YGYKRDFVIEYSKMLATPLEEIESLEQLRVLENGYKIKVLETTHSLIGVDTQENLEQVIN 236
Query: 288 FMRERNL 294
+++E N+
Sbjct: 237 YIKENNI 243
>sp|B0BBG2|KDSB_CHLTB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar L2b (strain UCH-1/proctitis) GN=kdsB
PE=3 SV=1
Length = 254
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 154/245 (62%), Gaps = 8/245 (3%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
A T VT + PE ++VKCV D +G A+YFSR IP+N P LH+G
Sbjct: 127 AADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDVEK 284
+ ++ FL Y + P+ L L EDLEQL+VLE G + V V A G VD PED+ K
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYV-HVVQNATGPSVDYPEDITK 241
Query: 285 IESFM 289
+E ++
Sbjct: 242 VEQYL 246
>sp|B0B9T2|KDSB_CHLT2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
GN=kdsB PE=3 SV=1
Length = 254
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 154/245 (62%), Gaps = 8/245 (3%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
A T VT + PE ++VKCV D +G A+YFSR IP+N P LH+G
Sbjct: 127 AADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDVEK 284
+ ++ FL Y + P+ L L EDLEQL+VLE G + V V A G VD PED+ K
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYV-HVVQNATGPSVDYPEDITK 241
Query: 285 IESFM 289
+E ++
Sbjct: 242 VEQYL 246
>sp|P0CD75|KDSB_CHLTR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=kdsB PE=3 SV=1
Length = 254
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 155/245 (63%), Gaps = 8/245 (3%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
A T+VT + PE ++VKCV D +G A+YFSR IP+N P LH+G
Sbjct: 127 AADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDVEK 284
+ ++ FL Y + P+ L L EDLEQL+VLE G + V V A G VD PED+ K
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYV-HVVQNATGPSVDYPEDITK 241
Query: 285 IESFM 289
+E ++
Sbjct: 242 VEQYL 246
>sp|Q3KMI0|KDSB_CHLTA 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=kdsB PE=3 SV=1
Length = 254
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 155/245 (63%), Gaps = 8/245 (3%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
A T+VT + PE ++VKCV D +G A+YFSR IP+N P LH+G
Sbjct: 127 AADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDVEK 284
+ ++ FL Y + P+ L L EDLEQL+VLE G + V V A G VD PED+ K
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYV-HVVQNATGPSVDYPEDITK 241
Query: 285 IESFM 289
+E ++
Sbjct: 242 VEQYL 246
>sp|A5G5T4|KDSB_GEOUR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
uraniireducens (strain Rf4) GN=kdsB PE=3 SV=1
Length = 251
Score = 204 bits (518), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 150/247 (60%), Gaps = 13/247 (5%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIPAR+AS+RFEGK L +I+GKPM+Q +ER+ A+ + ++VATDDE+IA
Sbjct: 2 KITAIIPARYASTRFEGKALADIMGKPMVQHVYERTAKASLVSEVIVATDDERIAAAVHA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG MTS GT+R E +L+ DI+VN+QGDEPLIEP +ID +K L
Sbjct: 62 FGGRAEMTSRVHETGTDRLAEVAARLDS--DIIVNVQGDEPLIEPAMIDEAIKPLAEDSS 119
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP---------Q 218
+ T T +K D PN VK V D GYA+YFSR +P N K N +
Sbjct: 120 VMMGTLKTRIKTLHDFLSPNVVKVVTDWEGYALYFSRSPLP-NFRDKWNDLKDEAFASRK 178
Query: 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDA 278
H+G+ Y +FL + + PT L++ E LEQL+VLENGY++KV++ D+E+ GVD
Sbjct: 179 LLCYKHVGLYVYRRDFLLQFAQMSPTYLEMAEKLEQLRVLENGYRIKVVETDYESIGVDT 238
Query: 279 PEDVEKI 285
P D+EK+
Sbjct: 239 PGDLEKV 245
>sp|Q254V8|KDSB_CHLFF 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
felis (strain Fe/C-56) GN=kdsB PE=3 SV=1
Length = 254
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 155/245 (63%), Gaps = 5/245 (2%)
Query: 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
F S+ VG++PAR+ S RF GKPL NILGK +IQRT+E +TTLD +VVATD+++I +
Sbjct: 6 FASKKVGVLPARWGSVRFTGKPLANILGKSLIQRTYENISQSTTLDKVVVATDNQRIMDH 65
Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
FG D +MTS C NGTER EA+ + + +I+VNIQGDEP ++ ++D +V+ L+
Sbjct: 66 VLDFGGDCVMTSPECANGTERTAEAISRYFPEAEIIVNIQGDEPCLQHTVVDTLVRKLEE 125
Query: 166 APD-AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLH 224
+P+ V + A + + +VKCV D +G A+YFSR IP+ + + P LH
Sbjct: 126 SPEIQVVTPAAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH----ILKKETPIYLH 181
Query: 225 LGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEK 284
+G+ ++ N L Y PT L EDLEQL++LE+G + + V+ ++ VD PED+ K
Sbjct: 182 IGVYAFRRNALFSYIESTPTSLSQAEDLEQLRILEHGGSIHICVVEAKSPSVDYPEDINK 241
Query: 285 IESFM 289
+E ++
Sbjct: 242 VEKYL 246
>sp|C6E0M8|KDSB_GEOSM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp.
(strain M21) GN=kdsB PE=3 SV=1
Length = 252
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 156/253 (61%), Gaps = 11/253 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ +IPAR+AS+RFEGK L +I+G+PM+Q +ER+ AT + ++VATDDE+IA +
Sbjct: 2 KITAVIPARYASTRFEGKALADIMGRPMVQHVYERAAKATLVSEVIVATDDERIAAAVRA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG V MTS + GT+R E K++ DIVVN+QGDEPLI+P +ID ++ L P
Sbjct: 62 FGGRVEMTSPTHETGTDRLAEVAAKIDA--DIVVNVQGDEPLIDPAMIDEAIRPLLDDPS 119
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK--------SGKVNPQF 219
+T +K D PN VK V D G +YFSR +P+ + V+ +
Sbjct: 120 IPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLYFSRSPLPFFRDKWNDLKDDAFVSGKL 179
Query: 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP 279
H+G+ Y FL ++ GL PT L+L E LEQL+VLENGY++K+++ + E+ GVD P
Sbjct: 180 LCYKHVGLYVYRREFLPVFAGLKPTYLELAEKLEQLRVLENGYRIKIVETEFESIGVDTP 239
Query: 280 EDVEKIESFMRER 292
D++K+ +++R
Sbjct: 240 ADLDKVLERLKDR 252
>sp|Q3A370|KDSB_PELCD 3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=kdsB PE=3
SV=1
Length = 250
Score = 201 bits (510), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 151/248 (60%), Gaps = 9/248 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
+ +IPAR+ASSRF GKPL ILGK MIQR +ER+ A +D +VVATDD +IA+ F
Sbjct: 3 ITAVIPARYASSRFPGKPLARILGKTMIQRVYERTAQAACIDRVVVATDDSRIADVVSGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
G +V MT GT+R E +++ + ++VN+QGDEPLI+P +I+ V L P
Sbjct: 63 GGEVQMTRADHATGTDRLAEVTARIDTQ--LIVNVQGDEPLIDPHMIEAAVAPLSEDPAI 120
Query: 170 VFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK-----SGKVNPQFPYLL 223
T T L ++ DPN VK V D G+A+YFSR IP+ + V+P L
Sbjct: 121 PMGTLKTPLLNWQEYRDPNVVKVVTDRRGFALYFSRAPIPHPRELAVDDSAVSPASMGLF 180
Query: 224 -HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDV 282
H+G+ Y +FL + GL +PL+ E LEQL+ LENGY ++V++ D + GVD PED+
Sbjct: 181 RHIGLYVYRKDFLLTFAGLPESPLERLEKLEQLRALENGYAIRVVETDRVSLGVDTPEDL 240
Query: 283 EKIESFMR 290
++E+ +R
Sbjct: 241 VRVEAHLR 248
>sp|Q01T78|KDSB_SOLUE 3-deoxy-manno-octulosonate cytidylyltransferase OS=Solibacter
usitatus (strain Ellin6076) GN=kdsB PE=3 SV=1
Length = 252
Score = 201 bits (510), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 149/243 (61%), Gaps = 5/243 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPARF+S+RF GK L I K M+Q +ER+ LAT L ++ATDDE++ +
Sbjct: 4 KILGVIPARFSSTRFPGKVLAQIANKTMLQHVYERAGLATYLTSTIIATDDERVYTAAKS 63
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FGA V MT +GT+R E + +I+VNIQGDEPLI+P ID V L PD
Sbjct: 64 FGARVRMTRADHLSGTDRVAEVASA--ENAEIIVNIQGDEPLIDPAAIDAAVLPLVHEPD 121
Query: 169 AVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
+ T ++ P + DPN VK V D+ G AIYFSR IP+++ + PY H+G+
Sbjct: 122 VLMGTLKKRIEDPREIVDPNVVKVVTDHAGDAIYFSRCPIPFDRDRSADT--PYFKHVGL 179
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES 287
Y +FL Y L PL+ E LEQL+ LENGY+++V++ ++E+ GVD PED+E++
Sbjct: 180 YVYQRDFLLSYSTLPVGPLERSERLEQLRALENGYRIRVVETEYESLGVDTPEDLERVSR 239
Query: 288 FMR 290
+
Sbjct: 240 LFK 242
>sp|B5E8N2|KDSB_GEOBB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
GN=kdsB PE=3 SV=2
Length = 255
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 152/246 (61%), Gaps = 11/246 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ +IPAR+AS+RFEGK L +I+G+PM+Q +ER+ AT + ++VATDDE+IA +
Sbjct: 6 KITAVIPARYASTRFEGKALADIMGRPMVQHVYERAAKATLVSEVIVATDDERIAAAVRA 65
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG V MTS + GT+R E +++ DI+VN+QGDEPLI+P +ID ++ L P
Sbjct: 66 FGGRVEMTSPTHETGTDRLAEVAARIDA--DIIVNVQGDEPLIDPAMIDEAIRPLLDDPS 123
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK--------SGKVNPQF 219
+T +K D PN VK V D G +YFSR +P+ + V+ +
Sbjct: 124 IPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLYFSRSPLPFFRDKWNDLKDDAFVSGKL 183
Query: 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP 279
H+G+ Y FL ++ GL PT L+L E LEQL+VLENGY++K+++ + E+ GVD P
Sbjct: 184 LCYKHVGLYVYRREFLPVFAGLQPTYLELAEKLEQLRVLENGYRIKIVETEFESIGVDTP 243
Query: 280 EDVEKI 285
D++K+
Sbjct: 244 ADLDKV 249
>sp|A0LE62|KDSB_SYNFM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=kdsB PE=3 SV=1
Length = 250
Score = 198 bits (504), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 152/242 (62%), Gaps = 9/242 (3%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
R+VGIIPAR+ SSRF GKPLV+ILGKPMI+ +ERS A LD L+VATDD +IA
Sbjct: 2 RIVGIIPARYQSSRFPGKPLVDILGKPMIRHVYERSARAGCLDRLIVATDDARIAAAVAG 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQA-- 165
FG + ++T +GT+R EA + LE DIVVNIQGDEPL+ +I+ +V+ALQ
Sbjct: 62 FGGEALLTRADHASGTDRLAEAARLLELDGADIVVNIQGDEPLVNHRMIEALVEALQCDR 121
Query: 166 -APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN-PQFPYLL 223
P A + SL +D +PN VK V+D A+YFSR IP+ + G + P F L
Sbjct: 122 HCPMATLAFPSESL--QDYNNPNVVKVVLDRGLRALYFSRAPIPFVRDGAADAPAF--LK 177
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE 283
HLG +Y ++FL+ + L P L+ E LEQL+ LE+GY ++V + GVD PED+E
Sbjct: 178 HLGFYAYSASFLQTFSRLPPGRLEGLEKLEQLRALEHGYGIRVALSPVDTRGVDTPEDLE 237
Query: 284 KI 285
+
Sbjct: 238 AV 239
>sp|B8FKL0|KDSB_DESAA 3-deoxy-manno-octulosonate cytidylyltransferase
OS=Desulfatibacillum alkenivorans (strain AK-01) GN=kdsB
PE=3 SV=1
Length = 245
Score = 198 bits (503), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 153/246 (62%), Gaps = 4/246 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+VV IIPAR+ S+RFE KPL I GKPMIQR +ER+ A+++ + VATDDE+I ++
Sbjct: 2 KVVVIIPARYGSTRFEAKPLALIAGKPMIQRVYERAAAASSVTGVAVATDDERIVSAVEK 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG +MTS++CR+GT+R EA + L DIVVN+QGD+P+ +PE ID V L P
Sbjct: 62 FGGKAVMTSDACRSGTDRVFEAGRTLGLTGSDIVVNVQGDQPVFDPECIDEVTAPLIGDP 121
Query: 168 DAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
+T A + + DP VK V D G+A+YFSR IP+++ G N +F HLG
Sbjct: 122 GTGMTTLAFAIVNEREMTDPKDVKMVFDQDGWALYFSRATIPHDRDG--NMEFDTYKHLG 179
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIE 286
+ +Y +FL + L L+ E LEQL+ LE G +K + +++ VD PED+ +IE
Sbjct: 180 VYAYTMDFLAEFCSLPEGHLEKIEKLEQLRALEYGLGIKTVVTAYDSPEVDLPEDIARIE 239
Query: 287 SFMRER 292
+ ++++
Sbjct: 240 ALLKDQ 245
>sp|B9M9Q4|KDSB_GEOSF 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp.
(strain FRC-32) GN=kdsB PE=3 SV=1
Length = 253
Score = 197 bits (500), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 150/254 (59%), Gaps = 13/254 (5%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIPAR+AS+RFEGK L I GKPM+Q +ER+ A+ + ++VATDDE+I +
Sbjct: 2 KITAIIPARYASTRFEGKALAQIQGKPMVQHVYERTLKASLVSEVIVATDDERIVAAVRA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG MTS S GT+R E +L+ DI+VN+QGDEPLI+P +ID + L
Sbjct: 62 FGGRAEMTSRSHETGTDRLAEVAARLDS--DIIVNVQGDEPLIDPAMIDEAISPLAEDSS 119
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP---------Q 218
+ T T +K D PN VK V D GYA+YFSR +P N K N +
Sbjct: 120 LLMGTLKTRIKSLHDFLSPNVVKVVTDWEGYALYFSRSPLP-NFRDKWNDLKDEAFSSRK 178
Query: 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDA 278
H+G+ Y FL + + PT L++ E LEQL+VLENGY++KV++ D E+ GVD
Sbjct: 179 LLCFKHVGLYVYRREFLLQFAQMSPTYLEMAEKLEQLRVLENGYRIKVVETDFESIGVDT 238
Query: 279 PEDVEKIESFMRER 292
P D++K+ +++R
Sbjct: 239 PGDLDKVLERLKDR 252
>sp|Q822T3|KDSB_CHLCV 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
caviae (strain GPIC) GN=kdsB PE=3 SV=1
Length = 254
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 152/245 (62%), Gaps = 5/245 (2%)
Query: 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
F S+ VG++PAR+ S+RF GKPL +ILGK +I+RT+E + LD ++VATDD++I +
Sbjct: 6 FASKKVGVLPARWGSARFTGKPLASILGKSLIRRTYENINQSIALDKVIVATDDQRIMDH 65
Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
FG D ++TS C NGTER E + + + +I+VNIQGDEP ++ ++D +V+ L+
Sbjct: 66 VLDFGGDCVLTSPECANGTERTAETISRYFPEAEIIVNIQGDEPCLQHTVVDALVRKLEE 125
Query: 166 APDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLH 224
P+ T V + + +VKCV D +G A+YFSR IP+ + + P LH
Sbjct: 126 FPEIQIVTPVAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH----ILKKETPIYLH 181
Query: 225 LGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEK 284
+G+ ++ N L Y PTPL EDLEQL++LE+G + V V+ ++ VD PED+ K
Sbjct: 182 IGVYAFRRNALFNYIESSPTPLSQAEDLEQLRILEHGGSIHVCVVEAKSPSVDYPEDINK 241
Query: 285 IESFM 289
+E ++
Sbjct: 242 VEKYL 246
>sp|B2RLM4|KDSB_PORG3 3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=kdsB PE=3 SV=1
Length = 254
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 155/256 (60%), Gaps = 14/256 (5%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
+ V+ IIPARFASSRF GKPL ++LGK MIQR ER +A + VVATDDE+I + +
Sbjct: 3 TEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHER--IAGVVPRAVVATDDERIRQAVE 60
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG +V+MTS C +GTERC EA K+ + IV+N+QGDEP I+ E ID ++ A P
Sbjct: 61 DFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFD-KP 119
Query: 168 DAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP-----Q 218
+ +T + +F+ PN K V+D+ GYA+YFSR +IPY + V P +
Sbjct: 120 ETDIATLAEVFSSDASFERLNNPNSPKIVLDHGGYALYFSRSVIPYLRG--VQPDSWCRR 177
Query: 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDA 278
Y H+GI ++ L+ L + + E LEQL+ LE GY+++V++ G+D
Sbjct: 178 HTYYKHIGIYAFRPTVLRKITSLPQSTAEQAESLEQLRWLEYGYRIRVLQTQQSTIGIDT 237
Query: 279 PEDVEKIESFMRERNL 294
PED++K +++R + +
Sbjct: 238 PEDMDKAIAYLRSQGM 253
>sp|Q7MTW6|KDSB_PORGI 3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=kdsB PE=3 SV=1
Length = 254
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 154/256 (60%), Gaps = 14/256 (5%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
+ V+ IIPARFASSRF GKPL ++LGK MIQR ER + + VVATDDE+I + +
Sbjct: 3 TEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHER--IVGVVPRAVVATDDERIRQAVE 60
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG +V+MTS C +GTERC EA K+ + IV+N+QGDEP I+ E ID ++ A P
Sbjct: 61 DFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFD-KP 119
Query: 168 DAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP-----Q 218
+ +T + +F+ PN K V+D+ GYA+YFSR +IPY + V P +
Sbjct: 120 ETDIATLAEVFSSDVSFERLNNPNSPKIVLDHGGYALYFSRSVIPYLRG--VQPDSWCRR 177
Query: 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDA 278
Y H+GI ++ L+ L + + E LEQL+ LE GY+++V++ G+D
Sbjct: 178 HTYYKHIGIYAFRPTVLRKITSLPQSTAEQAESLEQLRWLEYGYRIRVLQTQQSTIGIDT 237
Query: 279 PEDVEKIESFMRERNL 294
PED+EK +++R + +
Sbjct: 238 PEDMEKAIAYLRSQGM 253
>sp|Q9Z8U9|KDSB_CHLPN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
pneumoniae GN=kdsB PE=3 SV=1
Length = 254
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 149/240 (62%), Gaps = 5/240 (2%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
+G++PAR+ SSR+ GKPL I GK +IQRT+E + ++ LD +VVATDD+ I + FG
Sbjct: 11 IGVLPARWNSSRYPGKPLAKIHGKSLIQRTYENASQSSLLDKIVVATDDQHIIDHVTDFG 70
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170
+MTS +C NGTER E +K K +I+VNIQGDEP + E++D +V+ L+++P+A
Sbjct: 71 GYAVMTSPTCSNGTERTGEVARKYFPKAEIIVNIQGDEPCLNSEVVDALVQKLRSSPEAE 130
Query: 171 FSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQS 229
T V + E+ +VKCV D+ G A+YFSR IP+ + P LH+G+ +
Sbjct: 131 LVTPVALTTDREEILTEKKVKCVFDSEGRALYFSRSPIPF----ILKKATPVYLHIGVYA 186
Query: 230 YDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 289
+ L Y TPL EDLEQL+ LE+G K+ V VD ++ VD PED+ K+E ++
Sbjct: 187 FKREALFRYLQHSSTPLSDAEDLEQLRFLEHGGKIHVCIVDAKSPSVDYPEDIAKVEQYI 246
>sp|Q39W63|KDSB_GEOMG 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=kdsB PE=3 SV=1
Length = 254
Score = 194 bits (494), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 146/246 (59%), Gaps = 11/246 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIPAR+AS+RF GK L I+GKPM+Q +ER+ A + ++VATDDE++AE +
Sbjct: 2 KITAIIPARYASTRFPGKALAEIIGKPMVQHVYERTAKAGLVSEVIVATDDERVAEAVRA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG V MTS + GT+R E +++ DI+VN+QGDEPLIEP +ID + L A
Sbjct: 62 FGGRVEMTSATHETGTDRLAEVAARIDA--DIIVNVQGDEPLIEPAMIDEAIAPLVADAS 119
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIP--------YNKSGKVNPQF 219
T + +K D PN VK V D G A+YFSR +P V +
Sbjct: 120 IRMGTLKSRIKSLHDFLSPNVVKVVTDREGDALYFSRSPLPNFRDKWNDLKDEAFVTGRL 179
Query: 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP 279
H+G+ Y +FL + + PTPL+L E LEQL+VLENG++++V++ E+ GVD P
Sbjct: 180 LCYKHVGLYVYRRDFLLAFARMAPTPLELAEKLEQLRVLENGFRIRVVETSFESIGVDTP 239
Query: 280 EDVEKI 285
D++K+
Sbjct: 240 SDLDKV 245
>sp|Q5L5S2|KDSB_CHLAB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
abortus (strain S26/3) GN=kdsB PE=3 SV=1
Length = 254
Score = 191 bits (486), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 150/247 (60%), Gaps = 5/247 (2%)
Query: 44 KNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA 103
+ F S+ VG++PAR+ S RF GKPL ILGK +IQRT+E + TLD +VVATDD++I
Sbjct: 4 QTFISKKVGVLPARWGSVRFPGKPLAMILGKSLIQRTYENIIQSETLDKVVVATDDQRIM 63
Query: 104 ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163
+ FG +MTS C NGTER E + + + +I+VNIQGDEP + ++D +V+ L
Sbjct: 64 DHVLDFGGACLMTSPECANGTERMAETVSRYFPEAEIMVNIQGDEPCLRHTVVDALVRKL 123
Query: 164 QAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYL 222
+ P+ T V + + +VKCV D +G A+YFSR IP+ + + P
Sbjct: 124 EEHPEIQMVTPVAQTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH----ILKKETPIY 179
Query: 223 LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDV 282
LH+G+ ++ + L Y P+PL EDLEQL+VLE+G + V V+ ++ VD PED+
Sbjct: 180 LHIGVYAFRRSALFSYIASAPSPLSQAEDLEQLRVLEHGGSIHVCVVEAKSPSVDYPEDI 239
Query: 283 EKIESFM 289
K+E ++
Sbjct: 240 SKVEEYL 246
>sp|A8ZWH0|KDSB_DESOH 3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=kdsB PE=3 SV=1
Length = 248
Score = 191 bits (486), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIP+R+ S+RF GKPL I G PMIQR +++ K A + + VATDD +I E +
Sbjct: 2 KIAAIIPSRYGSTRFAGKPLAPIAGIPMIQRVYDQVKQAICVTDIAVATDDRRIVEAVTR 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG + +MTS +CR+GT+R EA +++ DIVVNIQGD+PLI P+ ID + L + P
Sbjct: 62 FGGNALMTSAACRSGTDRAAEAAKQMGLAPEDIVVNIQGDQPLIAPQTIDETLAPLLSDP 121
Query: 168 DAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
D +TA + + ++ +P VK V D G+A+YFSR IP+ + + +F HLG
Sbjct: 122 DLGMTTAAFAIMDKQEITNPKDVKMVFDADGFALYFSRSPIPFARDK--DTRFDTFKHLG 179
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIE 286
I +Y FL I+ L L+ E LEQL+ LE+ +++K + +++ VD PED+ +IE
Sbjct: 180 IYAYTRRFLDIFTQLPNGVLEEIEKLEQLRALEHSHRIKTVVTRYDSPEVDIPEDIPRIE 239
Query: 287 SFM 289
+ M
Sbjct: 240 AMM 242
>sp|Q04XW6|KDSB_LEPBL 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=kdsB PE=3 SV=1
Length = 246
Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 145/249 (58%), Gaps = 7/249 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPLV I K MI+ T+ + +T L LVVATDD +I E Q
Sbjct: 3 KILGVIPARYASSRFPGKPLVKIGDKTMIEWTYRNASRSTALSELVVATDDTRIHEVVQG 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG + +MT +GT+R E + L +Y I++NIQGDEP IEPE+IDGV + P+
Sbjct: 63 FGGNSVMTRADHISGTDRIIE-VANLFSEYSIIINIQGDEPGIEPELIDGVAGLKASHPE 121
Query: 169 AVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
STA L DPNRVK ++D +G AIYFSR LIP + P HLGI
Sbjct: 122 WKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIYFSRSLIP----SQFKQTVPLYRHLGI 177
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE-KIE 286
YD +FL Y L + L+ E LEQL+ +E GY + V VD P D+E IE
Sbjct: 178 YGYDRDFLLKYNSLPKSNLEESESLEQLRAIEAGYGIGVYLAQEAGLSVDTPADLEVVIE 237
Query: 287 SFMRERNLS 295
F + + ++
Sbjct: 238 DFKKRKWIT 246
>sp|Q04VK9|KDSB_LEPBJ 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=kdsB PE=3 SV=1
Length = 246
Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 145/249 (58%), Gaps = 7/249 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPLV I K MI+ T+ + +T L LVVATDD +I E Q
Sbjct: 3 KILGVIPARYASSRFPGKPLVKIGDKTMIEWTYRNASRSTALSELVVATDDTRIHEVVQG 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG + +MT +GT+R E + L +Y I++NIQGDEP IEPE+IDGV + P+
Sbjct: 63 FGGNSVMTRADHISGTDRIIE-VANLFSEYSIIINIQGDEPGIEPELIDGVAGLKASHPE 121
Query: 169 AVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
STA L DPNRVK ++D +G AIYFSR LIP + P HLGI
Sbjct: 122 WKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIYFSRSLIP----SQFKQTVPLYRHLGI 177
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE-KIE 286
YD +FL Y L + L+ E LEQL+ +E GY + V VD P D+E IE
Sbjct: 178 YGYDRDFLLKYNSLPKSNLEESESLEQLRAIEAGYGIGVYLAQEAGLSVDTPADLEVVIE 237
Query: 287 SFMRERNLS 295
F + + ++
Sbjct: 238 DFKKRKWIT 246
>sp|Q8F0C3|KDSB_LEPIN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=kdsB PE=3 SV=2
Length = 247
Score = 190 bits (483), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 145/249 (58%), Gaps = 7/249 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPL I K MI+ T+ + ++ L LVVATDD +I E Q+
Sbjct: 3 KILGVIPARYASSRFPGKPLAKIGDKTMIEWTYRNASRSSVLSELVVATDDVRIHEVVQK 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG +MTS +GT+R E + +Y I+VNIQGDEP IEPE+IDGV + P+
Sbjct: 63 FGGRSVMTSSDHPSGTDRIIEVANQF-SEYSIIVNIQGDEPGIEPELIDGVASLKASHPE 121
Query: 169 AVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
ST AV L A D NRVK ++D +G AIYFSR LIP + P HLGI
Sbjct: 122 WAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIYFSRSLIP----SQFKTTVPLYRHLGI 177
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE-KIE 286
YD +FL Y L + L+ E LEQL+ +E GY + + VD P D+E IE
Sbjct: 178 YGYDRDFLLQYNSLPKSNLEESESLEQLRAIEAGYGIGIYLSKEAGLSVDTPADLEIVIE 237
Query: 287 SFMRERNLS 295
F + + +S
Sbjct: 238 DFKKRKWIS 246
>sp|Q72UN2|KDSB_LEPIC 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=kdsB PE=3 SV=1
Length = 248
Score = 190 bits (483), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 145/249 (58%), Gaps = 7/249 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPL I K MI+ T+ + ++ L LVVATDD +I E Q+
Sbjct: 4 KILGVIPARYASSRFPGKPLAKIGDKTMIEWTYRNASRSSVLSELVVATDDVRIHEVVQK 63
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG +MTS +GT+R E + +Y I+VNIQGDEP IEPE+IDGV + P+
Sbjct: 64 FGGRSVMTSSDHPSGTDRIIEVANQF-SEYSIIVNIQGDEPGIEPELIDGVASLKASHPE 122
Query: 169 AVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
ST AV L A D NRVK ++D +G AIYFSR LIP + P HLGI
Sbjct: 123 WAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIYFSRSLIP----SQFKTTVPLYRHLGI 178
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE-KIE 286
YD +FL Y L + L+ E LEQL+ +E GY + + VD P D+E IE
Sbjct: 179 YGYDRDFLLQYNSLPKSNLEESESLEQLRAIEAGYGIGIYLSKEAGLSVDTPADLEIVIE 238
Query: 287 SFMRERNLS 295
F + + +S
Sbjct: 239 DFKKRKWIS 247
>sp|A1BI64|KDSB_CHLPD 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobium
phaeobacteroides (strain DSM 266) GN=kdsB PE=3 SV=1
Length = 247
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 154/247 (62%), Gaps = 11/247 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+ V +IPAR SSR E K L ++ G+P+I RTW ++ + D +VVATD+++IA Q
Sbjct: 2 KAVILIPARLDSSRLEKKMLADLQGEPLIVRTWRQALKSRLADRVVVATDNDEIASVLQA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL--QAA 166
+GA+V+MTS R GTER EA + +E DI VN+QGDEPLI PE ID ++ +
Sbjct: 62 YGAEVVMTSPHARCGTERIAEAAKSIEG--DIYVNLQGDEPLISPENIDLALEPFFTETP 119
Query: 167 PDAVFSTAVTSLKPED---AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL 223
PD ST V L PED D N VK V+DN GYA+YFSR IPY + +++
Sbjct: 120 PDC--STLVFPLLPEDFRQLEDINTVKVVMDNAGYALYFSRSPIPYQR--QISTSTECYR 175
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE 283
H+G+ ++ ++ L + L P+ L+L E LEQL++LENGY+++ +K +A GV+ ED+E
Sbjct: 176 HIGLYAFRADVLHAFASLAPSMLELAESLEQLRLLENGYRIRCVKTTRDAPGVNTYEDLE 235
Query: 284 KIESFMR 290
+ +R
Sbjct: 236 LVRQLLR 242
>sp|Q74BY2|KDSB_GEOSL 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=kdsB PE=3 SV=2
Length = 250
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 144/245 (58%), Gaps = 11/245 (4%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
+ IIPARFAS+RF GK L +I GKPM+Q +ER+ A + +VVATDD++IA+ + F
Sbjct: 3 ITAIIPARFASTRFPGKALADIAGKPMVQHVYERTARARLVSEVVVATDDDRIAQAVRGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
G V MTS GT+R E ++ +I+VN+QGDEPLIEP +ID + L P
Sbjct: 63 GGRVEMTSRDHETGTDRLAEVASRI--GAEIIVNVQGDEPLIEPAMIDEAIAPLAENPAV 120
Query: 170 VFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS--------GKVNPQFP 220
T + ++ D PN VK V D GYA+YFSR +P+ + + +
Sbjct: 121 RMGTLKSRIRTLHDFLSPNVVKVVTDLEGYALYFSRSPLPFFRDKWNDLKDESFASGRLL 180
Query: 221 YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPE 280
H+G+ Y +FL + + PT L+L E LEQL+ LENG +++V++ HE+ GVD P
Sbjct: 181 CYKHVGLYVYRRDFLMEFAKMPPTALELAEKLEQLRALENGCRIRVVETAHESIGVDTPN 240
Query: 281 DVEKI 285
D+EK+
Sbjct: 241 DLEKV 245
>sp|B5ETK7|KDSB_VIBFM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri
(strain MJ11) GN=kdsB PE=3 SV=1
Length = 249
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 148/243 (60%), Gaps = 7/243 (2%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDD +I + FG D
Sbjct: 6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGD 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K D IVVN+QGDEPLI P II V + L + +
Sbjct: 65 VCMTSPNHESGTERLAEVIEKCGISADEIVVNVQGDEPLIPPSIIQQVAQNLSDSVAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGI 227
+ AVT + +D F+PN VK V D GYA+YFSR IP+++ G+ P L H+GI
Sbjct: 125 TLAVTIDEEDDVFNPNAVKVVTDAEGYALYFSRASIPWDRDAFAQGETLTANPLLRHIGI 184
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIE 286
+Y + F+ Y P+ L+ E LEQL+VL G K+ V + + A GVD PED+EK+
Sbjct: 185 YAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHVAVAKEAPAAGVDTPEDLEKVR 244
Query: 287 SFM 289
+ +
Sbjct: 245 AIL 247
>sp|Q5E0E9|KDSB_VIBF1 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=kdsB PE=3 SV=1
Length = 249
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 148/243 (60%), Gaps = 7/243 (2%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDD +I + FG D
Sbjct: 6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGD 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K D IVVN+QGDEPLI P II V + L + +
Sbjct: 65 VCMTSPNHESGTERLAEVIEKCGISADEIVVNVQGDEPLIPPSIIQQVAQNLSDSVAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGI 227
+ AVT + +D F+PN VK V D GYA+YFSR IP+++ G+ P L H+GI
Sbjct: 125 TLAVTIDEEDDVFNPNAVKVVTDAEGYALYFSRASIPWDRDAFAQGETLTANPLLRHIGI 184
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIE 286
+Y + F+ Y P+ L+ E LEQL+VL G K+ V + + A GVD PED+EK+
Sbjct: 185 YAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHVAVAKEAPAAGVDTPEDLEKVR 244
Query: 287 SFM 289
+ +
Sbjct: 245 AIL 247
>sp|B5YGT5|KDSB_THEYD 3-deoxy-manno-octulosonate cytidylyltransferase
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=kdsB PE=3 SV=1
Length = 255
Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 153/247 (61%), Gaps = 11/247 (4%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
+ +IPAR+ S+RF GKPL + KP+IQ +ER+K + +D + VATDD +I + F
Sbjct: 3 TICVIPARYGSTRFPGKPLAFLKNKPIIQHVYERAKSSKMIDEVFVATDDSRILHTVESF 62
Query: 110 GADVIMTSESCRNGTERCNEALQK-LEKKYD-----IVVNIQGDEPLIEPEIIDGVVKAL 163
G IMTS +GT+R EA+ K L++ Y+ IV+N+QGDEPLI+ E+ID ++ +
Sbjct: 63 GGKAIMTSSKHPSGTDRIAEAVDKLLQEGYNLQESSIVINLQGDEPLIKKEMIDQLIDLM 122
Query: 164 QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQF 219
+ D++ + A K +D F+PN VK V D +GYA+YFSR IP+++ G F
Sbjct: 123 KNENDSIGTLAKRIEKEDDFFNPNIVKVVFDKNGYALYFSRSPIPFDREKFIKGFSKNNF 182
Query: 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP 279
Y H+GI Y+ LK + GL + L+ E LEQL+ LENG K+KV ++++ G+D P
Sbjct: 183 MY-KHIGIYGYNVRILKNFVGLPMSRLEEIESLEQLRALENGIKIKVGLTEYDSFGIDTP 241
Query: 280 EDVEKIE 286
ED+E E
Sbjct: 242 EDLEVAE 248
>sp|Q4QPI6|KDSB_HAEI8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain 86-028NP) GN=kdsB PE=3 SV=1
Length = 254
Score = 188 bits (477), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 152/247 (61%), Gaps = 11/247 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGANRVIIATDNENVADVAKNFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLL 223
S AV E+ F+PN VK + D GY +YFSR +IPY++ +N Q YL
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLADAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDV 282
H+GI +Y + F+K Y PT L+ E LEQL+VL NG ++ V + + A GVD ED+
Sbjct: 185 HIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDL 244
Query: 283 EKIESFM 289
EK+ + +
Sbjct: 245 EKVRAIL 251
>sp|A1VA25|KDSB_DESVV 3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfovibrio
vulgaris subsp. vulgaris (strain DP4) GN=kdsB PE=3 SV=1
Length = 252
Score = 188 bits (477), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 150/244 (61%), Gaps = 3/244 (1%)
Query: 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGA 111
GIIPAR+ASSRF GKPL +ILG+PM ++R++ D + +ATDD +IA+ G
Sbjct: 9 GIIPARYASSRFPGKPLADILGRPMFWHVYDRARRCAAFDEVALATDDARIADAANVLGV 68
Query: 112 DVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170
+MT+E +GT+R +EA +L D +VVNIQGDEP ++P ++D +V A V
Sbjct: 69 PCVMTAEHHPSGTDRVHEAAMRLGVADDAVVVNIQGDEPALDPRMLDQLVAPFADASVRV 128
Query: 171 FSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL-HLGIQS 229
+T +L ++A P+RVK VV +G A+YFSR IP+ + G V L H+G+ +
Sbjct: 129 -ATLAMALSAQEAQSPDRVKVVVAANGDALYFSRADIPFVRDGDVGGDTAGRLGHIGLYA 187
Query: 230 YDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 289
+ L+ + L P+ L+ E LEQL++LENG ++V+ + HGVD PED++ I + +
Sbjct: 188 FRMEALRRFTQLPPSRLEQTEKLEQLRLLENGIAIRVVPTTYRTHGVDRPEDIDVIINLL 247
Query: 290 RERN 293
RE +
Sbjct: 248 REND 251
>sp|B3EAK6|KDSB_GEOLS 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=kdsB
PE=3 SV=1
Length = 252
Score = 187 bits (476), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 149/252 (59%), Gaps = 11/252 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++V IIPAR+ S+RF GK L ++ GKPMIQ +E++ A+ + +VATDD +IA+ Q
Sbjct: 2 QIVAIIPARYGSTRFPGKALADLAGKPMIQHVYEQTIRASLVSRAIVATDDRRIADVIHQ 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G + IMTS GT+R E + L+ DI+VN+QGDEPLI+P +I+ ++ P
Sbjct: 62 IGGEAIMTSTDHETGTDRLAEVARGLDA--DIIVNVQGDEPLIDPAMINQAIEPFLGNPG 119
Query: 169 AVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS--------GKVNPQF 219
T + +K D PN VK V DN+GYA+YFSR +P+ + + +
Sbjct: 120 LKMGTLKSRVKCLHDFLSPNVVKVVTDNNGYALYFSRSPLPFFRDKWQDLKDEAFASGRL 179
Query: 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP 279
H+G+ Y NFL Y + T L+L E LEQL+ LENG +++V++ + E+ GVD P
Sbjct: 180 LCFKHVGLYVYQRNFLLEYAAMPQTFLELSEKLEQLRALENGIRIRVVETEFESLGVDTP 239
Query: 280 EDVEKIESFMRE 291
+D+ K + M++
Sbjct: 240 DDLNKAKERMKQ 251
>sp|A4Y7B5|KDSB_SHEPC 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=kdsB PE=3
SV=1
Length = 245
Score = 187 bits (475), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 146/241 (60%), Gaps = 8/241 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V+ +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDDE+I + F
Sbjct: 3 VILLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKATVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R NEA++ L K D+V+N+QGD+PLI+P I+ ++ + P
Sbjct: 63 GGKVVMTSPDAASGTDRINEAIKLLGLKDDDLVINVQGDQPLIDPTAIEQLINLFERQP- 121
Query: 169 AVFSTAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 225
F A + D DP +VK V DN+ YA+YFSR IP+ G+ +P HL
Sbjct: 122 GEFEMATLGYEIVNKADIDDPMQVKMVFDNNYYALYFSRSRIPF---GRDTQDYPVFKHL 178
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 285
GI +Y S F++ + L L+ E LEQL+ LE+G+K+K+ + VD PED+ K
Sbjct: 179 GIYAYTSKFVQTFAALPLGRLEDLEKLEQLRALEHGHKIKIAISASNSLEVDRPEDIHKC 238
Query: 286 E 286
E
Sbjct: 239 E 239
>sp|A1RJ74|KDSB_SHESW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sp.
(strain W3-18-1) GN=kdsB PE=3 SV=1
Length = 245
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 146/241 (60%), Gaps = 8/241 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V+ +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDDE+I + F
Sbjct: 3 VILLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKATVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R NEA++ L K D+V+N+QGD+PLI+P I+ ++ + P
Sbjct: 63 GGKVVMTSPDAASGTDRINEAIKLLGLKDDDLVINVQGDQPLIDPTAIEQLINLFERQP- 121
Query: 169 AVFSTAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 225
F A + D DP +VK V DN+ YA+YFSR IP+ G+ +P HL
Sbjct: 122 GEFEMATLGYEIVNKADIDDPMQVKMVFDNNYYALYFSRSRIPF---GRDTQDYPVFKHL 178
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 285
GI +Y S F++ + L L+ E LEQL+ LE+G+K+K+ + VD PED+ K
Sbjct: 179 GIYAYTSKFVQTFAALPLGRLEDLEKLEQLRALEHGHKIKIAISASNSLEVDRPEDIHKC 238
Query: 286 E 286
E
Sbjct: 239 E 239
>sp|P44490|KDSB_HAEIN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=kdsB PE=1 SV=2
Length = 254
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 151/247 (61%), Gaps = 11/247 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIKGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLL 223
S AV E+ F+PN VK + D GY +YFSR +IPY++ +N Q YL
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDV 282
H+GI +Y + F+K Y PT L+ E LEQL+VL NG ++ V + + A GVD ED+
Sbjct: 185 HIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDL 244
Query: 283 EKIESFM 289
EK+ + +
Sbjct: 245 EKVRAIL 251
>sp|A5UFM6|KDSB_HAEIG 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain PittGG) GN=kdsB PE=3 SV=1
Length = 254
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 151/247 (61%), Gaps = 11/247 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGANRVIIATDNENVADVVKNFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLL 223
S AV E+ F+PN VK + D GY +YFSR +IPY++ +N Q YL
Sbjct: 125 SLAVKIHDGEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLADAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDV 282
H+GI +Y S F+K Y PT L+ E LEQL+VL NG ++ V + + A GVD ED+
Sbjct: 185 HIGIYAYRSGFIKQYMQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDL 244
Query: 283 EKIESFM 289
EK+ +
Sbjct: 245 EKVRLIL 251
>sp|Q726J3|KDSB_DESVH 3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=kdsB PE=3 SV=1
Length = 252
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 3/244 (1%)
Query: 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGA 111
GIIPAR+ASSRF GKPL ILG+PM ++R++ D + +ATDD +IA+ G
Sbjct: 9 GIIPARYASSRFPGKPLAEILGRPMFWHVYDRARRCAAFDEVALATDDARIADAANVLGV 68
Query: 112 DVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170
+MT+E +GT+R +EA +L D +VVNIQGDEP ++P ++D +V A V
Sbjct: 69 PCVMTAEHHPSGTDRVHEAAMRLGVPDDAVVVNIQGDEPALDPRMLDQLVAPFADASVRV 128
Query: 171 FSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL-HLGIQS 229
+T +L ++A P+RVK VV +G A+YFSR IP+ + G V L H+G+ +
Sbjct: 129 -ATLAMALSAQEAQSPDRVKVVVAANGDALYFSRADIPFVRDGDVGGDTAGRLGHIGLYA 187
Query: 230 YDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 289
+ L+ + L P+ L+ E LEQL++LENG ++V+ + HGVD PED++ I + +
Sbjct: 188 FRMEALRRFTQLPPSRLEQTEKLEQLRLLENGIAIRVVPTTYRTHGVDRPEDIDVIINLL 247
Query: 290 RERN 293
RE +
Sbjct: 248 REND 251
>sp|Q2LY80|KDSB_SYNAS 3-deoxy-manno-octulosonate cytidylyltransferase OS=Syntrophus
aciditrophicus (strain SB) GN=kdsB PE=3 SV=1
Length = 248
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++V IIP+R++SSRF+GKPL ++ GKPMIQ +ER + + + VATDD +I E ++
Sbjct: 3 KIVCIIPSRYSSSRFQGKPLADLCGKPMIQHVYERVLKSELVSYAAVATDDSRIFEAVRK 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG IMT+ R+GT+R EA+ L+ K DIVVN+QGD+P+ EPE I V + L+ P
Sbjct: 63 FGGKAIMTAARHRSGTDRIAEAVNSLDLKDDDIVVNVQGDQPIFEPEQIAEVTRPLREDP 122
Query: 168 DAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
+T + + + E+ PN VK V D + A+YFSR IPY + + +P Y H G
Sbjct: 123 SLPMATLIYRIVREEEITHPNAVKVVFDRNFNALYFSRATIPYVRDDR-HP-IAYYKHHG 180
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIE 286
I +Y FL+ + L ++ E LEQL+ LE GY+++V++ H++ VD PE++ ++
Sbjct: 181 IYAYRRAFLRTFTALEEGTMERLESLEQLRALEFGYRIRVVETLHDSVEVDTPEELARVR 240
Query: 287 SFM 289
+
Sbjct: 241 DIL 243
>sp|A6VQ31|KDSB_ACTSZ 3-deoxy-manno-octulosonate cytidylyltransferase OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=kdsB PE=3
SV=1
Length = 259
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 147/251 (58%), Gaps = 15/251 (5%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMI+ WE+++ + +VVATD+E++ QFG +
Sbjct: 7 IIPARFASSRLPGKPLADIAGKPMIRHVWEKARRSGA-SRVVVATDNEQVKNAVLQFGGE 65
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTSE +GTER E ++KL+ D I+VNIQGDEPLI P I+ V L +
Sbjct: 66 VCMTSEKHNSGTERLAEVVEKLDIADDEIIVNIQGDEPLIPPVIVQQVAANLAKYRVNMA 125
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS------------GKVNPQF 219
S AV ++ F+PN VK + D GY +YFSR IP+N+ +
Sbjct: 126 SLAVKIEDVQELFNPNAVKVLTDQAGYVLYFSRAAIPWNRDEFADIAANTKNLDDLRLGD 185
Query: 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDA 278
YL H+GI +Y + F+K Y PT L+ E LEQL+VL G ++ V + + A GVD
Sbjct: 186 HYLRHIGIYAYRAGFIKRYVQWQPTALEKIESLEQLRVLWYGERIHVELAEEVPAVGVDT 245
Query: 279 PEDVEKIESFM 289
PED+EK+ S +
Sbjct: 246 PEDLEKVRSIL 256
>sp|A5UB81|KDSB_HAEIE 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain PittEE) GN=kdsB PE=3 SV=1
Length = 254
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 150/247 (60%), Gaps = 11/247 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKNFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF--------PYLL 223
S AV E+ F+PN VK + D GY +YFSR +IPY++ +N Q YL
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQNVQKVQLADAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDV 282
H+GI +Y + F+K Y PT L+ E LEQL+VL NG ++ V + + A GVD ED+
Sbjct: 185 HIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDL 244
Query: 283 EKIESFM 289
EK+ +
Sbjct: 245 EKVRLIL 251
>sp|Q3IGX8|KDSB_PSEHT 3-deoxy-manno-octulosonate cytidylyltransferase
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=kdsB PE=3 SV=1
Length = 253
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 157/256 (61%), Gaps = 20/256 (7%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
V +IPAR+ASSR GKPL +I GKPMIQ +E++ L+ +V+ATD +K+ + F
Sbjct: 4 VVVIPARYASSRLPGKPLADICGKPMIQHVYEKACLSGA-SKVVIATDHQKVFDAVSTFT 62
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQ--AAP 167
+DV+MT E ++GTER E + L+ + IVVN+QGDEPL+ PE + V L AP
Sbjct: 63 SDVLMTREDHQSGTERLAEVVDLLKLDNNTIVVNVQGDEPLLAPENVSQVATLLNESTAP 122
Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ-----FPYL 222
A S A+ + ED F+PN VK V D + A+YFSR IP+++S + Q P+
Sbjct: 123 MATLSVAIE--EQEDVFNPNAVKVVSDINKNALYFSRASIPFDRSAMMGEQSTLDLTPFQ 180
Query: 223 LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-----GVD 277
H+GI +Y + F+K Y L +PL+ E LEQL+VL +GY +K+ +AH GVD
Sbjct: 181 RHVGIYAYRAGFIKQYIELSVSPLEQLESLEQLRVLYHGYNIKI----EQAHITPQAGVD 236
Query: 278 APEDVEKIESFMRERN 293
PED+ K+ S+++ ++
Sbjct: 237 TPEDLAKVISYLQSKH 252
>sp|A6L5J0|KDSB_BACV8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Bacteroides
vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
GN=kdsB PE=3 SV=1
Length = 252
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 152/251 (60%), Gaps = 10/251 (3%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+ +GIIPAR+AS+RF KPL + GKP+IQR +E +++ LD VATDDE+I +
Sbjct: 2 KFIGIIPARYASTRFPAKPLAVLGGKPVIQRVYE--QVSGILDEAYVATDDERIESAVKA 59
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG V+MTS ++GT+RC EA K+ + YD+VVNIQGDEP I+ ++ VKA P
Sbjct: 60 FGGKVVMTSVHHKSGTDRCYEAYTKVGRGYDVVVNIQGDEPFIQKSQLEA-VKACFEDPA 118
Query: 169 AVFSTAVTSLKPEDAFDP----NRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF---PY 221
+T V P+D + N K VV + A+YFSR +IP+ ++ + Y
Sbjct: 119 TQIATLVKPFIPDDGLEALENVNSPKVVVGKNMNALYFSRSIIPFQRNVEKEGWLKGHTY 178
Query: 222 LLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPED 281
H+G+ +Y ++ LK L + L+L E LEQL+ LENGY +KV + E G+D P+D
Sbjct: 179 YKHIGLYAYRADVLKEITSLPQSSLELAESLEQLRWLENGYTIKVGISEVETIGIDTPQD 238
Query: 282 VEKIESFMRER 292
+ + E+F+++R
Sbjct: 239 LARAEAFLKQR 249
>sp|Q1GZI3|KDSB_METFK 3-deoxy-manno-octulosonate cytidylyltransferase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=kdsB
PE=3 SV=1
Length = 257
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 147/245 (60%), Gaps = 9/245 (3%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ASSR GKPL++I GKPM+ R ERS LA+ +VVATD E+I E +G D
Sbjct: 6 VIPARYASSRLPGKPLLDIAGKPMVVRVIERS-LASGAAEVVVATDHERIQEAVSSYGYD 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V+MTS +GT+R E +Q+ + D IVVN+QGDEPLI+P +I V L A +A
Sbjct: 65 VMMTSADHASGTDRIAEVVQQRGWEDDTIVVNVQGDEPLIDPRLIGEVAGNLSAHAEASM 124
Query: 172 STAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNKSG-----KVNPQFPYLLHL 225
+TA L + +PN VK V+D G+A+YFSR IPY + + P P H+
Sbjct: 125 ATACHVLHDTPSILNPNIVKVVLDQQGHALYFSRAPIPYPRDAFAANQDIPPGMPIYRHI 184
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEK 284
GI +Y + FL+ Y L P+ ++ E LEQL+VL +GYK+ V I A GVD D+
Sbjct: 185 GIYAYRAGFLRAYAALTPSAIEYFESLEQLRVLWHGYKISVEITEKAPASGVDTEADLAY 244
Query: 285 IESFM 289
+ S +
Sbjct: 245 VRSVV 249
>sp|Q87R14|KDSB_VIBPA 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=kdsB PE=3 SV=1
Length = 251
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 153/250 (61%), Gaps = 15/250 (6%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR++SSR GKPL +I GKPM+Q +E++ A D +++ATDDE+++ +QFG
Sbjct: 6 VIPARYSSSRLPGKPLADIGGKPMVQWVYEQAMQAGA-DDVIIATDDERVSAAVEQFGGK 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K+ D I+VN+QGDEPL+ P II V L AA DA
Sbjct: 65 VCMTSPNHESGTERLAEVVEKMAIPADHIIVNVQGDEPLVPPVIIRQVADNL-AASDAPM 123
Query: 172 STAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLIPYNKS-------GKVNPQFPYLL 223
+T ++ ED F+PN VK V D GYA+YFSR IP+++ VN P +
Sbjct: 124 ATLAVEIESEDEVFNPNAVKVVADERGYAMYFSRATIPWDRDNFAKQDKAIVN---PLMR 180
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDV 282
H+GI +Y + F+ Y P+ L+ E LEQL+VL G K+ V + + A GVD PED+
Sbjct: 181 HIGIYAYRAGFINTYVNWAPSALEQIECLEQLRVLWYGEKIHVAVAKEAPAAGVDTPEDL 240
Query: 283 EKIESFMRER 292
E + + + ++
Sbjct: 241 EAVRAIVAKK 250
>sp|A7MV12|KDSB_VIBHB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=kdsB PE=3 SV=1
Length = 252
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 148/246 (60%), Gaps = 7/246 (2%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ASSR GKPL +I GKPMIQ +E++ A D +++ATDD++++ +QFG
Sbjct: 6 VIPARYASSRLPGKPLADIGGKPMIQWVYEQALQAGAED-VIIATDDKRVSAAAEQFGGK 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K+ D IVVN+QGDEPLI P II V L +
Sbjct: 65 VCMTSPNHESGTERLAEVVEKMAIPADHIVVNVQGDEPLIPPSIIRQVADNLAGCDAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ----FPYLLHLGI 227
+ AV E+ F+PN VK V D GYA+YFSR IP+++ P +LH+GI
Sbjct: 125 TLAVEIESEEEVFNPNAVKVVADERGYAMYFSRATIPWDRDNFAKQDKTIANPLMLHIGI 184
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIE 286
+Y + F+ Y P+ L+ E LEQL+VL G K+ V + + A GVD PED+E +
Sbjct: 185 YAYRAGFINTYVNWQPSALEQIECLEQLRVLWYGEKIHVEVAKEAPAAGVDTPEDLESVR 244
Query: 287 SFMRER 292
+ + ++
Sbjct: 245 AIVAKQ 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,266,266
Number of Sequences: 539616
Number of extensions: 4864726
Number of successful extensions: 16550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 14681
Number of HSP's gapped (non-prelim): 487
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)