Query 022555
Match_columns 295
No_of_seqs 221 out of 1757
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02917 CMP-KDO synthetase 100.0 4E-50 8.6E-55 361.7 31.3 291 5-295 3-293 (293)
2 COG1212 KdsB CMP-2-keto-3-deox 100.0 2.4E-40 5.2E-45 276.9 23.8 243 47-293 1-246 (247)
3 TIGR00466 kdsB 3-deoxy-D-manno 100.0 8.4E-37 1.8E-41 268.1 25.6 230 52-283 2-238 (238)
4 PRK05450 3-deoxy-manno-octulos 100.0 3.9E-34 8.5E-39 252.0 28.0 240 48-289 1-244 (245)
5 PRK13368 3-deoxy-manno-octulos 100.0 2.3E-33 4.9E-38 246.1 26.7 235 48-289 1-238 (238)
6 cd02517 CMP-KDO-Synthetase CMP 100.0 9.6E-33 2.1E-37 242.3 27.8 238 49-288 1-239 (239)
7 PF01128 IspD: 2-C-methyl-D-er 100.0 4.1E-30 8.8E-35 221.7 15.5 211 50-291 1-221 (221)
8 PLN02728 2-C-methyl-D-erythrit 100.0 7.2E-29 1.6E-33 218.8 19.7 218 48-293 23-248 (252)
9 TIGR03584 PseF pseudaminic aci 100.0 1.6E-27 3.4E-32 207.1 24.1 209 52-290 2-221 (222)
10 PRK13385 2-C-methyl-D-erythrit 100.0 7.4E-28 1.6E-32 210.4 19.2 215 48-291 1-225 (230)
11 COG1209 RfbA dTDP-glucose pyro 100.0 3.1E-27 6.7E-32 204.0 21.8 217 52-291 3-237 (286)
12 cd02513 CMP-NeuAc_Synthase CMP 100.0 9.7E-27 2.1E-31 201.8 23.6 211 49-289 1-223 (223)
13 COG1211 IspD 4-diphosphocytidy 100.0 1.6E-27 3.5E-32 204.8 18.1 214 47-291 2-228 (230)
14 PRK00155 ispD 2-C-methyl-D-ery 100.0 1.5E-26 3.2E-31 201.7 20.1 216 47-292 1-225 (227)
15 COG1083 NeuA CMP-N-acetylneura 99.9 3.6E-26 7.7E-31 190.4 17.6 218 47-294 1-227 (228)
16 COG1207 GlmU N-acetylglucosami 99.9 2.7E-25 5.9E-30 202.0 23.1 231 48-293 1-246 (460)
17 PRK14356 glmU bifunctional N-a 99.9 5.7E-25 1.2E-29 210.5 23.7 229 49-292 5-246 (456)
18 TIGR00453 ispD 2-C-methyl-D-er 99.9 1.6E-25 3.4E-30 193.8 17.8 208 52-289 2-217 (217)
19 TIGR01105 galF UTP-glucose-1-p 99.9 3.1E-24 6.7E-29 193.9 25.5 222 49-289 3-276 (297)
20 PRK15480 glucose-1-phosphate t 99.9 5.3E-24 1.1E-28 191.9 23.9 219 50-290 4-241 (292)
21 PRK09382 ispDF bifunctional 2- 99.9 1.1E-24 2.3E-29 202.2 19.5 207 47-291 3-214 (378)
22 PRK14353 glmU bifunctional N-a 99.9 4.1E-24 8.8E-29 204.0 23.9 231 46-292 2-245 (446)
23 cd06915 NTP_transferase_WcbM_l 99.9 5E-24 1.1E-28 184.3 21.7 211 52-286 1-223 (223)
24 cd02538 G1P_TT_short G1P_TT_sh 99.9 1.4E-23 3.1E-28 184.3 23.7 217 51-290 2-238 (240)
25 PRK14355 glmU bifunctional N-a 99.9 1.9E-23 4E-28 200.2 24.8 231 47-292 1-245 (459)
26 COG1208 GCD1 Nucleoside-diphos 99.9 1.4E-23 2.9E-28 194.5 22.8 221 51-292 3-237 (358)
27 KOG1322 GDP-mannose pyrophosph 99.9 5.1E-24 1.1E-28 187.5 18.3 221 48-291 8-245 (371)
28 cd02516 CDP-ME_synthetase CDP- 99.9 4.9E-24 1.1E-28 184.3 17.9 207 50-285 1-218 (218)
29 TIGR01207 rmlA glucose-1-phosp 99.9 1.6E-23 3.6E-28 188.4 21.8 217 52-290 2-237 (286)
30 PRK14359 glmU bifunctional N-a 99.9 2.3E-23 5.1E-28 197.8 23.6 221 48-292 1-236 (430)
31 cd02540 GT2_GlmU_N_bac N-termi 99.9 2.2E-23 4.8E-28 181.4 21.0 216 52-282 1-229 (229)
32 cd04189 G1P_TT_long G1P_TT_lon 99.9 5.4E-23 1.2E-27 179.9 23.2 218 51-291 2-235 (236)
33 PRK10122 GalU regulator GalF; 99.9 1.6E-22 3.5E-27 182.9 25.4 222 49-289 3-276 (297)
34 PRK14354 glmU bifunctional N-a 99.9 1.1E-22 2.3E-27 194.8 24.5 229 48-292 1-242 (458)
35 cd06425 M1P_guanylylT_B_like_N 99.9 1.7E-22 3.7E-27 176.7 23.0 216 51-289 2-232 (233)
36 TIGR01208 rmlA_long glucose-1- 99.9 1.4E-22 3.1E-27 187.8 22.9 219 52-292 2-237 (353)
37 PRK14358 glmU bifunctional N-a 99.9 2E-22 4.4E-27 193.9 24.6 230 48-292 6-247 (481)
38 PRK14352 glmU bifunctional N-a 99.9 1.8E-22 4E-27 194.4 24.0 219 49-282 4-236 (482)
39 TIGR01173 glmU UDP-N-acetylglu 99.9 1.5E-22 3.3E-27 193.3 23.2 224 51-292 2-238 (451)
40 PF00483 NTP_transferase: Nucl 99.9 6.5E-23 1.4E-27 180.5 18.5 222 51-291 1-247 (248)
41 PF02348 CTP_transf_3: Cytidyl 99.9 2.8E-23 6E-28 179.6 15.8 182 51-233 1-185 (217)
42 TIGR01099 galU UTP-glucose-1-p 99.9 2.6E-22 5.6E-27 178.3 21.6 217 51-285 2-260 (260)
43 cd06422 NTP_transferase_like_1 99.9 3.2E-22 7E-27 173.5 20.6 206 52-285 2-221 (221)
44 cd02541 UGPase_prokaryotic Pro 99.9 1.3E-21 2.7E-26 174.6 23.3 222 51-290 2-265 (267)
45 COG2068 Uncharacterized MobA-r 99.9 5.6E-22 1.2E-26 165.4 18.3 190 47-290 3-198 (199)
46 PRK05293 glgC glucose-1-phosph 99.9 1.3E-21 2.8E-26 183.2 21.5 226 48-291 2-259 (380)
47 cd06428 M1P_guanylylT_A_like_N 99.9 2E-21 4.2E-26 172.5 21.5 220 52-289 1-257 (257)
48 PRK14360 glmU bifunctional N-a 99.9 2.4E-21 5.3E-26 185.1 23.5 224 50-292 2-239 (450)
49 TIGR02623 G1P_cyt_trans glucos 99.9 3.9E-21 8.4E-26 170.4 22.6 212 52-292 2-247 (254)
50 cd06426 NTP_transferase_like_2 99.9 2.3E-21 5.1E-26 167.7 20.3 207 52-286 1-220 (220)
51 PRK02862 glgC glucose-1-phosph 99.9 1.9E-21 4.2E-26 184.6 21.1 235 47-290 1-273 (429)
52 PRK13389 UTP--glucose-1-phosph 99.9 7.4E-21 1.6E-25 172.4 23.8 220 51-290 10-280 (302)
53 PRK09451 glmU bifunctional N-a 99.9 2.1E-21 4.5E-26 186.0 20.3 222 47-286 3-242 (456)
54 PRK00844 glgC glucose-1-phosph 99.9 1.6E-20 3.6E-25 177.2 23.4 233 47-291 3-277 (407)
55 cd02524 G1P_cytidylyltransfera 99.9 2.5E-20 5.4E-25 165.1 21.6 214 52-292 1-248 (253)
56 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 8.6E-21 1.9E-25 165.5 18.1 209 52-283 1-231 (231)
57 PLN02241 glucose-1-phosphate a 99.9 1.8E-20 3.9E-25 178.4 21.3 235 47-291 1-282 (436)
58 PRK02726 molybdopterin-guanine 99.9 1.6E-20 3.4E-25 160.8 17.8 117 45-165 3-120 (200)
59 TIGR02092 glgD glucose-1-phosp 99.9 8.3E-21 1.8E-25 177.0 17.5 224 49-290 2-253 (369)
60 PRK00317 mobA molybdopterin-gu 99.9 2.6E-20 5.6E-25 158.3 18.3 114 47-166 1-117 (193)
61 PRK00725 glgC glucose-1-phosph 99.9 8E-20 1.7E-24 173.4 23.0 232 48-291 14-288 (425)
62 cd02523 PC_cytidylyltransferas 99.9 2.3E-20 5E-25 162.7 17.8 211 52-286 1-229 (229)
63 PRK14357 glmU bifunctional N-a 99.9 1E-19 2.2E-24 173.9 23.0 219 51-292 2-232 (448)
64 COG1213 Predicted sugar nucleo 99.9 1.9E-20 4.2E-25 159.2 15.7 214 49-292 3-231 (239)
65 cd02518 GT2_SpsF SpsF is a gly 99.9 8.5E-20 1.8E-24 159.7 20.0 111 52-166 2-116 (233)
66 cd02503 MobA MobA catalyzes th 99.9 2.5E-20 5.4E-25 156.6 15.9 107 51-163 2-109 (181)
67 TIGR02091 glgC glucose-1-phosp 99.8 3.4E-20 7.4E-25 172.4 17.7 228 52-292 1-260 (361)
68 TIGR03310 matur_ygfJ molybdenu 99.8 7E-20 1.5E-24 154.6 17.3 114 52-167 2-119 (188)
69 PF12804 NTP_transf_3: MobA-li 99.8 2E-20 4.4E-25 154.0 13.6 114 52-167 1-115 (160)
70 TIGR03202 pucB xanthine dehydr 99.8 9.7E-20 2.1E-24 154.4 18.0 116 51-167 2-125 (190)
71 COG1210 GalU UDP-glucose pyrop 99.8 1.2E-18 2.5E-23 151.1 21.7 224 50-291 5-271 (291)
72 cd04181 NTP_transferase NTP_tr 99.8 8.5E-19 1.8E-23 151.0 20.9 203 52-277 1-217 (217)
73 TIGR02665 molyb_mobA molybdopt 99.8 4.2E-19 9E-24 149.8 16.9 112 50-165 1-115 (186)
74 cd02509 GDP-M1P_Guanylyltransf 99.8 4.4E-19 9.6E-24 158.9 17.8 224 51-281 2-273 (274)
75 COG2266 GTP:adenosylcobinamide 99.8 1.1E-18 2.4E-23 141.9 18.3 106 52-164 3-112 (177)
76 PRK00560 molybdopterin-guanine 99.8 8.6E-19 1.9E-23 149.5 17.8 104 48-160 7-113 (196)
77 TIGR00454 conserved hypothetic 99.8 1.6E-18 3.5E-23 146.1 18.0 119 51-173 2-124 (183)
78 PRK14490 putative bifunctional 99.8 1.4E-18 3E-23 162.0 18.3 112 47-163 172-284 (369)
79 cd04182 GT_2_like_f GT_2_like_ 99.8 8.4E-19 1.8E-23 147.3 14.3 116 50-166 1-119 (186)
80 COG0746 MobA Molybdopterin-gua 99.8 2.1E-18 4.5E-23 146.1 16.6 115 47-167 2-116 (192)
81 TIGR01479 GMP_PMI mannose-1-ph 99.8 1.1E-17 2.3E-22 160.3 19.1 228 50-286 1-281 (468)
82 PRK14500 putative bifunctional 99.8 1.6E-17 3.5E-22 152.6 17.0 111 49-164 160-271 (346)
83 COG0448 GlgC ADP-glucose pyrop 99.8 2.6E-17 5.7E-22 149.9 16.7 227 48-289 4-260 (393)
84 cd04197 eIF-2B_epsilon_N The N 99.7 9.6E-17 2.1E-21 138.9 16.8 178 51-234 2-216 (217)
85 PRK14489 putative bifunctional 99.7 1.7E-16 3.7E-21 147.7 18.9 115 47-166 3-121 (366)
86 KOG1460 GDP-mannose pyrophosph 99.7 4.6E-17 1E-21 141.8 10.9 230 48-292 1-266 (407)
87 cd02508 ADP_Glucose_PP ADP-glu 99.7 1.6E-16 3.4E-21 135.8 14.1 172 52-276 1-200 (200)
88 COG1861 SpsF Spore coat polysa 99.7 1.5E-15 3.3E-20 127.6 16.4 116 47-166 1-120 (241)
89 PRK15460 cpsB mannose-1-phosph 99.6 2.5E-14 5.5E-19 136.5 18.5 232 47-285 3-289 (478)
90 COG0836 {ManC} Mannose-1-phosp 99.6 2.5E-14 5.4E-19 126.9 16.3 229 50-286 2-282 (333)
91 cd04198 eIF-2B_gamma_N The N-t 99.5 5E-13 1.1E-17 115.5 16.2 120 51-177 2-137 (214)
92 cd02507 eIF-2B_gamma_N_like Th 99.5 7.8E-13 1.7E-17 114.4 14.0 106 51-162 2-125 (216)
93 COG4750 LicC CTP:phosphocholin 99.4 2.7E-12 5.8E-17 105.7 13.9 156 51-236 2-166 (231)
94 PRK00576 molybdopterin-guanine 99.4 5.3E-12 1.1E-16 105.9 13.7 96 65-165 4-102 (178)
95 TIGR03552 F420_cofC 2-phospho- 99.3 1.5E-10 3.3E-15 98.4 16.1 89 74-165 30-118 (195)
96 KOG1462 Translation initiation 99.1 9E-11 2E-15 106.2 4.2 117 45-166 5-138 (433)
97 KOG1461 Translation initiation 98.7 1.7E-06 3.6E-11 83.2 19.6 243 39-292 12-292 (673)
98 cd04180 UGPase_euk_like Eukary 98.7 1E-06 2.2E-11 78.6 16.7 104 50-153 1-150 (266)
99 cd04193 UDPGlcNAc_PPase UDPGlc 98.5 5.5E-06 1.2E-10 75.9 15.8 111 48-159 14-181 (323)
100 PTZ00339 UDP-N-acetylglucosami 98.5 8.3E-06 1.8E-10 78.2 17.4 181 48-238 105-349 (482)
101 COG1920 Predicted nucleotidylt 98.3 1.9E-05 4.1E-10 65.6 13.2 101 52-165 3-113 (210)
102 PF01983 CofC: Guanylyl transf 98.2 4.4E-06 9.5E-11 71.9 7.2 102 51-164 2-114 (217)
103 cd00897 UGPase_euk Eukaryotic 97.9 0.00062 1.4E-08 61.6 16.1 227 48-287 2-295 (300)
104 PLN02474 UTP--glucose-1-phosph 97.8 0.0014 3.1E-08 62.6 16.0 232 47-288 77-371 (469)
105 PLN02435 probable UDP-N-acetyl 97.6 0.00096 2.1E-08 64.1 13.1 104 48-151 115-275 (493)
106 cd06424 UGGPase UGGPase cataly 97.4 0.00095 2.1E-08 60.7 9.1 103 51-153 2-158 (315)
107 PLN02830 UDP-sugar pyrophospho 97.2 0.0084 1.8E-07 59.4 13.8 117 48-165 127-300 (615)
108 PF01704 UDPGP: UTP--glucose-1 97.1 0.015 3.2E-07 55.3 14.2 185 47-238 54-286 (420)
109 cd06421 CESA_CelA_like CESA_Ce 96.5 0.063 1.4E-06 45.9 12.4 92 75-169 15-115 (234)
110 cd00761 Glyco_tranf_GTA_type G 96.3 0.11 2.3E-06 40.3 11.8 92 74-169 9-108 (156)
111 cd02511 Beta4Glucosyltransfera 96.3 0.1 2.2E-06 45.2 12.5 90 72-168 10-101 (229)
112 cd06438 EpsO_like EpsO protein 96.2 0.14 3E-06 42.4 12.6 97 72-169 7-112 (183)
113 PF00535 Glycos_transf_2: Glyc 96.1 0.039 8.4E-07 43.9 8.6 93 72-168 8-108 (169)
114 PRK10714 undecaprenyl phosphat 96.1 0.14 3E-06 47.1 13.0 111 47-170 5-122 (325)
115 cd06439 CESA_like_1 CESA_like_ 96.0 0.18 4E-06 43.7 12.8 101 47-165 28-136 (251)
116 PRK11498 bcsA cellulose syntha 96.0 0.13 2.9E-06 53.0 13.3 91 76-169 275-370 (852)
117 TIGR03030 CelA cellulose synth 95.8 0.17 3.7E-06 51.5 13.4 91 76-169 146-259 (713)
118 cd04195 GT2_AmsE_like GT2_AmsE 95.8 0.2 4.4E-06 41.7 11.8 92 76-171 14-113 (201)
119 COG4284 UDP-glucose pyrophosph 95.7 0.011 2.4E-07 56.0 4.1 40 47-86 103-146 (472)
120 PF09837 DUF2064: Uncharacteri 95.7 0.12 2.5E-06 40.6 9.1 89 80-171 1-92 (122)
121 PRK11204 N-glycosyltransferase 95.2 0.77 1.7E-05 43.4 14.9 91 75-169 67-165 (420)
122 PRK13915 putative glucosyl-3-p 95.2 0.45 9.7E-06 43.4 12.5 109 46-170 29-148 (306)
123 cd04186 GT_2_like_c Subfamily 95.0 0.48 1.1E-05 37.6 11.2 94 72-169 7-105 (166)
124 PLN02726 dolichyl-phosphate be 94.9 0.96 2.1E-05 39.3 13.5 110 43-166 4-121 (243)
125 TIGR03469 HonB hopene-associat 94.9 0.63 1.4E-05 43.7 13.1 106 47-167 39-162 (384)
126 cd06423 CESA_like CESA_like is 94.6 0.66 1.4E-05 36.6 11.1 95 72-169 7-109 (180)
127 cd06435 CESA_NdvC_like NdvC_li 94.6 0.73 1.6E-05 39.5 11.9 88 76-165 13-111 (236)
128 cd06434 GT2_HAS Hyaluronan syn 94.5 0.59 1.3E-05 39.9 11.0 84 75-164 14-103 (235)
129 cd04184 GT2_RfbC_Mx_like Myxoc 94.4 1.3 2.8E-05 36.7 12.7 92 75-170 15-115 (202)
130 cd06442 DPM1_like DPM1_like re 94.4 0.91 2E-05 38.4 11.9 90 72-165 7-105 (224)
131 TIGR03472 HpnI hopanoid biosyn 94.4 1.1 2.4E-05 41.8 13.4 101 47-165 40-153 (373)
132 PF10111 Glyco_tranf_2_2: Glyc 94.3 1.2 2.7E-05 39.8 13.1 72 101-175 51-128 (281)
133 cd04187 DPM1_like_bac Bacteria 94.1 1.5 3.2E-05 35.9 12.4 46 121-169 66-111 (181)
134 cd04179 DPM_DPG-synthase_like 94.1 1.2 2.6E-05 36.3 11.7 88 74-165 9-106 (185)
135 cd06433 GT_2_WfgS_like WfgS an 93.8 0.95 2.1E-05 37.1 10.6 94 72-169 8-106 (202)
136 cd04192 GT_2_like_e Subfamily 93.7 1.4 3.1E-05 37.1 11.8 92 72-166 7-110 (229)
137 TIGR03111 glyc2_xrt_Gpos1 puta 93.6 1.4 2.9E-05 42.3 12.7 105 47-169 48-162 (439)
138 cd06427 CESA_like_2 CESA_like_ 93.6 2 4.4E-05 37.0 12.8 89 75-166 14-112 (241)
139 cd04196 GT_2_like_d Subfamily 93.6 1.9 4.1E-05 35.9 12.2 95 72-169 8-110 (214)
140 cd02510 pp-GalNAc-T pp-GalNAc- 93.5 1.2 2.6E-05 40.0 11.6 92 75-170 12-115 (299)
141 cd04188 DPG_synthase DPG_synth 93.5 1.2 2.6E-05 37.5 10.9 91 72-166 7-110 (211)
142 cd02525 Succinoglycan_BP_ExoA 93.4 1.4 3.1E-05 37.6 11.4 88 74-166 12-109 (249)
143 cd02520 Glucosylceramide_synth 93.3 3 6.6E-05 34.7 13.1 85 76-164 15-112 (196)
144 cd06913 beta3GnTL1_like Beta 1 93.3 2.1 4.6E-05 36.2 12.3 99 71-172 6-118 (219)
145 KOG2388 UDP-N-acetylglucosamin 93.2 0.064 1.4E-06 50.9 2.7 77 4-86 58-140 (477)
146 PRK14583 hmsR N-glycosyltransf 92.9 2.1 4.5E-05 41.0 12.7 91 75-169 88-186 (444)
147 cd04185 GT_2_like_b Subfamily 92.6 2.6 5.6E-05 35.0 11.6 92 71-164 6-105 (202)
148 cd04191 Glucan_BSP_ModH Glucan 92.1 4.6 0.0001 35.7 13.0 101 68-169 4-126 (254)
149 PRK05454 glucosyltransferase M 92.1 3 6.6E-05 42.4 13.0 92 77-169 144-251 (691)
150 cd02526 GT2_RfbF_like RfbF is 92.1 2.7 5.8E-05 35.8 11.3 87 70-160 5-97 (237)
151 COG1216 Predicted glycosyltran 91.9 2.5 5.4E-05 38.2 11.3 102 70-173 11-119 (305)
152 COG1215 Glycosyltransferases, 91.7 2.6 5.6E-05 39.8 11.7 103 48-166 54-165 (439)
153 PTZ00260 dolichyl-phosphate be 91.5 3.9 8.4E-05 37.7 12.3 51 111-165 139-189 (333)
154 TIGR01556 rhamnosyltran L-rham 91.5 3.7 8.1E-05 36.3 11.8 88 75-166 8-101 (281)
155 PRK10073 putative glycosyl tra 90.5 5.4 0.00012 36.6 12.2 88 74-166 18-113 (328)
156 cd06436 GlcNAc-1-P_transferase 90.0 5.1 0.00011 33.3 10.7 93 71-164 6-115 (191)
157 cd02522 GT_2_like_a GT_2_like_ 89.7 7.2 0.00016 32.6 11.6 88 73-166 10-100 (221)
158 cd06420 GT2_Chondriotin_Pol_N 89.7 7.8 0.00017 31.3 11.5 89 72-163 7-104 (182)
159 cd06437 CESA_CaSu_A2 Cellulose 89.6 6.1 0.00013 33.7 11.2 87 74-164 13-113 (232)
160 PRK10018 putative glycosyl tra 87.0 13 0.00028 33.3 11.9 90 72-165 15-112 (279)
161 PRK10063 putative glycosyl tra 87.0 10 0.00023 33.1 11.1 87 72-164 11-107 (248)
162 PF13704 Glyco_tranf_2_4: Glyc 84.6 7.2 0.00016 28.4 7.7 79 74-153 4-87 (97)
163 COG3222 Uncharacterized protei 83.3 15 0.00032 30.8 9.3 91 74-166 37-132 (211)
164 PF13641 Glyco_tranf_2_3: Glyc 82.6 2.5 5.5E-05 35.8 5.0 87 74-164 13-112 (228)
165 COG2943 MdoH Membrane glycosyl 78.7 15 0.00032 36.0 9.0 94 77-171 164-273 (736)
166 PRK13010 purU formyltetrahydro 77.7 32 0.0007 31.1 10.6 96 44-158 90-189 (289)
167 cd02514 GT13_GLCNAC-TI GT13_GL 76.0 58 0.0013 30.1 12.0 102 71-174 8-135 (334)
168 KOG2978 Dolichol-phosphate man 75.7 49 0.0011 28.1 12.0 89 75-166 19-116 (238)
169 cd04190 Chitin_synth_C C-termi 74.9 27 0.00058 30.2 9.3 32 137-169 73-104 (244)
170 COG0463 WcaA Glycosyltransfera 68.9 54 0.0012 25.7 10.3 99 47-163 2-107 (291)
171 PRK05647 purN phosphoribosylgl 68.9 44 0.00095 28.4 8.8 92 47-157 1-99 (200)
172 PF09258 Glyco_transf_64: Glyc 66.1 8.3 0.00018 34.0 4.0 97 75-175 13-112 (247)
173 PRK13011 formyltetrahydrofolat 63.5 75 0.0016 28.7 9.7 92 47-157 89-184 (286)
174 TIGR00655 PurU formyltetrahydr 61.4 95 0.002 27.9 9.9 89 52-157 87-179 (280)
175 PF13712 Glyco_tranf_2_5: Glyc 61.3 48 0.001 28.5 7.8 46 122-169 41-86 (217)
176 TIGR03065 srtB_sig_QVPTGV sort 57.7 4.7 0.0001 22.9 0.5 13 32-44 19-31 (32)
177 PF14097 SpoVAE: Stage V sporu 57.4 1.1E+02 0.0024 25.4 10.8 103 92-200 1-114 (180)
178 PRK14716 bacteriophage N4 adso 55.1 1.2E+02 0.0026 29.8 10.2 90 72-162 76-182 (504)
179 KOG0734 AAA+-type ATPase conta 53.5 38 0.00083 33.5 6.2 98 60-160 329-456 (752)
180 PRK06027 purU formyltetrahydro 48.7 2E+02 0.0044 25.8 10.1 90 52-158 92-185 (286)
181 PRK11234 nfrB bacteriophage N4 48.6 2.4E+02 0.0051 29.2 11.5 91 72-165 73-181 (727)
182 PF13506 Glyco_transf_21: Glyc 46.9 85 0.0018 25.8 6.8 38 125-165 20-58 (175)
183 PF10087 DUF2325: Uncharacteri 46.9 38 0.00082 24.9 4.2 42 90-134 49-96 (97)
184 COG3473 Maleate cis-trans isom 45.5 2E+02 0.0044 24.9 9.2 79 78-159 107-199 (238)
185 PLN02331 phosphoribosylglycina 44.8 2E+02 0.0043 24.6 9.2 89 52-157 2-97 (207)
186 TIGR02990 ectoine_eutA ectoine 40.7 2.5E+02 0.0054 24.5 9.3 81 76-159 107-201 (239)
187 PF09419 PGP_phosphatase: Mito 38.3 2.2E+02 0.0048 23.5 7.8 74 75-149 62-146 (168)
188 PF07302 AroM: AroM protein; 35.3 3E+02 0.0065 23.9 9.6 106 52-164 91-201 (221)
189 COG2179 Predicted hydrolase of 34.4 2.5E+02 0.0055 23.3 7.4 71 73-148 47-119 (175)
190 COG0299 PurN Folate-dependent 34.3 2.9E+02 0.0064 23.5 9.6 91 52-160 3-101 (200)
191 TIGR00639 PurN phosphoribosylg 33.3 2.9E+02 0.0063 23.1 10.1 89 52-157 3-98 (190)
192 PF13684 Dak1_2: Dihydroxyacet 33.0 1.5E+02 0.0033 27.0 6.7 55 92-148 98-153 (313)
193 PRK13412 fkp bifunctional fuco 31.4 48 0.001 35.2 3.4 33 51-83 94-137 (974)
194 PRK12338 hypothetical protein; 28.5 1.7E+02 0.0037 26.8 6.2 129 140-294 182-311 (319)
195 TIGR03599 YloV DAK2 domain fus 27.3 2E+02 0.0044 28.4 6.8 54 93-148 317-371 (530)
196 TIGR02764 spore_ybaN_pdaB poly 26.6 3.6E+02 0.0078 22.1 10.6 67 99-166 109-180 (191)
197 PHA03265 envelope glycoprotein 25.3 14 0.0003 34.0 -1.4 34 9-46 341-376 (402)
198 TIGR02968 succ_dehyd_anc succi 23.7 43 0.00093 25.1 1.2 17 13-29 2-18 (105)
199 KOG2638 UDP-glucose pyrophosph 23.2 2.2E+02 0.0048 27.3 5.8 63 47-109 101-174 (498)
200 PRK15489 nfrB bacteriophage N4 22.9 8.5E+02 0.018 25.1 11.1 95 72-168 81-192 (703)
201 COG2121 Uncharacterized protei 22.2 4.2E+02 0.0091 22.8 6.8 66 90-158 67-136 (214)
202 PF05991 NYN_YacP: YacP-like N 21.5 2E+02 0.0044 23.5 4.9 38 75-114 81-118 (166)
203 PF04028 DUF374: Domain of unk 21.2 3E+02 0.0066 19.3 6.2 47 100-149 23-69 (74)
204 PRK13505 formate--tetrahydrofo 20.7 5.9E+02 0.013 25.4 8.4 88 72-163 356-456 (557)
205 KOG3857 Alcohol dehydrogenase, 20.0 6.9E+02 0.015 23.5 8.2 75 73-148 54-138 (465)
No 1
>PLN02917 CMP-KDO synthetase
Probab=100.00 E-value=4e-50 Score=361.65 Aligned_cols=291 Identities=91% Similarity=1.354 Sum_probs=250.7
Q ss_pred CCCCCCCCCCCChhhhHHHHhhccchhcccCeeeeeCCCCCCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHH
Q 022555 5 SICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERS 84 (295)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l 84 (295)
+..+.|.++++||+||+||+++++++|.+||+-.|.+|.|+..|++.+||||||.|+||++|+|++++|+|||+|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aIIpA~G~SsR~~~K~L~~i~GkPLL~~vi~~a 82 (293)
T PLN02917 3 SSSSSSSSSSSTKSWIVHGIVAGAAIAAAIGAGAYLRRSRKFRSRVVGIIPARFASSRFEGKPLVHILGKPMIQRTWERA 82 (293)
T ss_pred cccCCccccccchhHHhhhhcccccceeeccCchhhhhccccCCcEEEEEecCCCCCCCCCCCeeeECCEEHHHHHHHHH
Confidence 33456677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555 85 KLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 85 ~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (295)
.+++.++.|+|+++++++.+.+.++++.++.+++..++|+.++..|+..+..+.|.+++++||+||+++++|+++++.+.
T Consensus 83 ~~~~~~~~VVV~~~~e~I~~~~~~~~v~vi~~~~~~~~GT~~~~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~ 162 (293)
T PLN02917 83 KLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 162 (293)
T ss_pred HcCCCCCEEEEECChHHHHHHHHHcCCEEEeCCcccCCchHHHHHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHH
Confidence 98766788888888889988888778887777666678888888888887534689999999999999999999999887
Q ss_pred hCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC
Q 022555 165 AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT 244 (295)
Q Consensus 165 ~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~ 244 (295)
++.+.++++.+.+...++..+|++++++.|++|+++||+++++|+.|+....+..+.++|+|+|+|+.+.|..+..+.++
T Consensus 163 ~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~ 242 (293)
T PLN02917 163 AAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPT 242 (293)
T ss_pred hcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCC
Confidence 66566665554444445567778888778888999999999888888755456667899999999999999977777777
Q ss_pred CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHhcCC
Q 022555 245 PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295 (295)
Q Consensus 245 ~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r~~~ 295 (295)
.++..++++++..+++|.+|.++..+...+.||||+||+.+|+++++|++|
T Consensus 243 n~e~e~yLtdl~~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~~~~ 293 (293)
T PLN02917 243 PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRERNIS 293 (293)
T ss_pred cccchhccHHHHHHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 788888888888888999999998877889999999999999999999986
No 2
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-40 Score=276.88 Aligned_cols=243 Identities=47% Similarity=0.766 Sum_probs=219.7
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHH
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER 126 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~ 126 (295)
+|+..+||||+=.||||++|||..|+|+|||.|+.+++.++ +.++++|.|+++++.+.++.+|..++.+...++.|+++
T Consensus 1 ~~~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s-~~~rvvVATDde~I~~av~~~G~~avmT~~~h~SGTdR 79 (247)
T COG1212 1 TMKFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKS-GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDR 79 (247)
T ss_pred CCceEEEEecchhcccCCCCchhhhCCchHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCCCccHH
Confidence 47788999999999999999999999999999999999998 59999999999999999999999999998889999999
Q ss_pred HHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEeec
Q 022555 127 CNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSR 204 (295)
Q Consensus 127 i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~~ 204 (295)
+..+++.+. .+.+.++-++||.||+.++.|+.+++.++++ ++.+++++.+++ .++.++|+.+|++.|.+|+.+||++
T Consensus 80 ~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~-~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSR 158 (247)
T COG1212 80 LAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS-NADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSR 158 (247)
T ss_pred HHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhC-CcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEc
Confidence 999998885 3456888899999999999999999999876 566666666665 4677899999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecC-CcCCCCCHHHHH
Q 022555 205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVE 283 (295)
Q Consensus 205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~-~~idIdtpeDl~ 283 (295)
.++||.|+. ..+.|.+.+.|||.|++++|.+|....++.+|..|.++|++++++|.+|++...++ ..+.|||||||+
T Consensus 159 s~iP~~rd~--~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe 236 (247)
T COG1212 159 APIPYGRDN--FGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLE 236 (247)
T ss_pred CCCCCcccc--cCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHH
Confidence 999999875 33368999999999999999999999999999999999999999999999998875 559999999999
Q ss_pred HHHHHHHHhc
Q 022555 284 KIESFMRERN 293 (295)
Q Consensus 284 ~ae~ll~~r~ 293 (295)
+++++++++.
T Consensus 237 ~v~~~~~~~~ 246 (247)
T COG1212 237 RVRKILSNNL 246 (247)
T ss_pred HHHHHHHhhc
Confidence 9999998764
No 3
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=100.00 E-value=8.4e-37 Score=268.07 Aligned_cols=230 Identities=45% Similarity=0.707 Sum_probs=193.7
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHH
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEAL 131 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al 131 (295)
+||||||.|+||++|+|++++|+|||+|+++++.+++ +++|+|+++++++.+.+++++++++.+.....+|+.++..++
T Consensus 2 ~iIpA~g~s~R~~~K~L~~l~GkPli~~~le~~~~~~-~d~VvVvt~~~~i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~ 80 (238)
T TIGR00466 2 VIIPARLASSRLPGKPLEDIFGKPMIVHVAENANESG-ADRCIVATDDESVAQTCQKFGIEVCMTSKHHNSGTERLAEVV 80 (238)
T ss_pred EEEecCCCCCCCCCCeecccCCcCHHHHHHHHHHhCC-CCeEEEEeCHHHHHHHHHHcCCEEEEeCCCCCChhHHHHHHH
Confidence 7999999999999999999999999999999998875 999999999888888888888887765555678888887777
Q ss_pred HHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEeecCCCCC
Q 022555 132 QKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209 (295)
Q Consensus 132 ~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~ 209 (295)
..+. .+.|.+++++||+||++++.|+++++.+.+. +..+++++.+.. .++..+|+++|++.+.+|++++|++.++|+
T Consensus 81 ~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~-~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~ 159 (238)
T TIGR00466 81 EKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK-NVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPF 159 (238)
T ss_pred HHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC-CCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCC
Confidence 6552 1357899999999999999999999988543 233444455553 355677999998778899999999998888
Q ss_pred CCCCCCCCCCC----ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCC-cCCCCCHHHHH
Q 022555 210 NKSGKVNPQFP----YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVE 283 (295)
Q Consensus 210 ~r~~~~~~~~p----~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~-~idIdtpeDl~ 283 (295)
+|+..+..++| ++.+.|+|.|++++|..|..+.++.+|..|.++|++++++|.+|+++..+.. .+.||||+|++
T Consensus 160 ~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~~ 238 (238)
T TIGR00466 160 DRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDLE 238 (238)
T ss_pred CCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHcC
Confidence 88865544554 5679999999999999999998999999999999999999999999998766 68999999984
No 4
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=100.00 E-value=3.9e-34 Score=252.03 Aligned_cols=240 Identities=47% Similarity=0.789 Sum_probs=181.3
Q ss_pred CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i 127 (295)
|++.+||||||+|+||++|+|++++|+|||+|+++++.++ ++++|+|+++++.+.+.+.+++++++...+...+++.++
T Consensus 1 m~~~~iIlA~g~S~R~~~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~~~i~~~~~~~~~~v~~~~~~~~~gt~~~ 79 (245)
T PRK05450 1 MKFLIIIPARYASTRLPGKPLADIGGKPMIVRVYERASKA-GADRVVVATDDERIADAVEAFGGEVVMTSPDHPSGTDRI 79 (245)
T ss_pred CceEEEEecCCCCCCCCCCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCcHHHHHHHHHcCCEEEECCCcCCCchHHH
Confidence 6889999999999999999999999999999999999988 699999999988888877777888766544555666666
Q ss_pred HHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeC-CCCCCCCCCceEEEECCCCeEEEeecC
Q 022555 128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRG 205 (295)
Q Consensus 128 ~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~-~~~~~~~p~~~~v~~d~~g~v~~~~~~ 205 (295)
..++..+. .+.+.+++++||+||+++++++++++.+.++.... ++.+.+. ......+|+.+++.+|++|++++|.++
T Consensus 80 ~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~ 158 (245)
T PRK05450 80 AEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADM-ATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRA 158 (245)
T ss_pred HHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCe-EeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCC
Confidence 66666552 13578999999999999999999999887542222 2222333 212334667788878889999999999
Q ss_pred CCCCCCCCCCC-CCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecC-CcCCCCCHHHHH
Q 022555 206 LIPYNKSGKVN-PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVE 283 (295)
Q Consensus 206 ~i~~~r~~~~~-~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~-~~idIdtpeDl~ 283 (295)
+++.+++.... +..+...++|+|+|+++.+..+....+..++..+......++..|.+|+++..++ +|+|||||+||.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~ 238 (245)
T PRK05450 159 PIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLE 238 (245)
T ss_pred CCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHH
Confidence 86543322111 1235889999999999999876654444433333322234567899999999884 999999999999
Q ss_pred HHHHHH
Q 022555 284 KIESFM 289 (295)
Q Consensus 284 ~ae~ll 289 (295)
+|++.+
T Consensus 239 ~a~~~~ 244 (245)
T PRK05450 239 RVRALL 244 (245)
T ss_pred HHHHHh
Confidence 999875
No 5
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=100.00 E-value=2.3e-33 Score=246.13 Aligned_cols=235 Identities=42% Similarity=0.722 Sum_probs=174.8
Q ss_pred CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i 127 (295)
|++.+||||||+|+||++|+|++++|+|||+|+++++++++.+++|+|+++++++.+++++++++++..++...+++.++
T Consensus 1 m~~~aiIlA~g~s~R~~~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~~i~~~~~~~~~~v~~~~~~~~~g~~~~ 80 (238)
T PRK13368 1 MKVVVVIPARYGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAFGGKVVMTSDDHLSGTDRL 80 (238)
T ss_pred CcEEEEEecCCCCCCCCCCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChHHHHHHHHHcCCeEEecCccCCCccHHH
Confidence 57899999999999999999999999999999999999886699999999988888888888888877666666777788
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCC-CCCCCCCceEEEECCCCeEEEeecCC
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGL 206 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~-~~~~~p~~~~v~~d~~g~v~~~~~~~ 206 (295)
..++..+ +.|.+++++||+||+++++++++++.+.+++...++..+.+... ....+|...++..+++|++..|.+++
T Consensus 81 ~~a~~~~--~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~ 158 (238)
T PRK13368 81 AEVMLKI--EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSP 158 (238)
T ss_pred HHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCC
Confidence 8888876 35789999999999999999999998865433223222233221 11123666555566778988887653
Q ss_pred CCCCCCCCCCCCC--CceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHH
Q 022555 207 IPYNKSGKVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEK 284 (295)
Q Consensus 207 i~~~r~~~~~~~~--p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ 284 (295)
.+ . ++|+. ....|+|+|+|++++|..+......+++..+..+...++..|.++.+++.+..|+|||||+||..
T Consensus 159 ~~-~----~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~ 233 (238)
T PRK13368 159 IP-S----RRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLER 233 (238)
T ss_pred CC-C----CCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHH
Confidence 32 1 23333 34789999999999998764432222221111111234557888999998889999999999999
Q ss_pred HHHHH
Q 022555 285 IESFM 289 (295)
Q Consensus 285 ae~ll 289 (295)
|+.++
T Consensus 234 a~~~~ 238 (238)
T PRK13368 234 VRAIM 238 (238)
T ss_pred HHHhC
Confidence 99863
No 6
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=100.00 E-value=9.6e-33 Score=242.30 Aligned_cols=238 Identities=53% Similarity=0.894 Sum_probs=175.7
Q ss_pred ceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHH
Q 022555 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN 128 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~ 128 (295)
++.+||||||+|+||++|+|++++|+|||+|+++++.+++++++|+|+++++.+.+++.++++.+++.++...+++.++.
T Consensus 1 ~~~~iIlA~g~s~R~~~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~gt~~~~ 80 (239)
T cd02517 1 KVIVVIPARYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVESFGGKVVMTSPDHPSGTDRIA 80 (239)
T ss_pred CEEEEEecCCCCCCCCCCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHcCCEEEEcCcccCchhHHHH
Confidence 35799999999999999999999999999999999998756999999999888888887778888766544456666777
Q ss_pred HHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCC-CCCCCceEEEECCCCeEEEeecCCC
Q 022555 129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLI 207 (295)
Q Consensus 129 ~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~-~~~p~~~~v~~d~~g~v~~~~~~~i 207 (295)
.++..+....|.+++++||+||+++++++.+++.+.+++++.+++.+.++.... ..+++.++++.+++|++..|.++++
T Consensus 81 ~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~ 160 (239)
T cd02517 81 EVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPI 160 (239)
T ss_pred HHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCC
Confidence 777776422478999999999999999999999886542333344334432111 0134556777788899988887654
Q ss_pred CCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHH
Q 022555 208 PYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES 287 (295)
Q Consensus 208 ~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ 287 (295)
+.+++. .+......++|+|+|+++.+..+......+++.++.+....++..|.++..+..++.|+|||||+||..|++
T Consensus 161 ~~~~~~--~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 161 PYPRDS--SEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred CCCCCC--CCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 422221 122246899999999999988765432333444443322234568888999988778999999999999986
Q ss_pred H
Q 022555 288 F 288 (295)
Q Consensus 288 l 288 (295)
+
T Consensus 239 ~ 239 (239)
T cd02517 239 L 239 (239)
T ss_pred C
Confidence 3
No 7
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.97 E-value=4.1e-30 Score=221.74 Aligned_cols=211 Identities=24% Similarity=0.392 Sum_probs=150.3
Q ss_pred eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcCCeEEeCCCCCCCc
Q 022555 50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCRNG 123 (295)
Q Consensus 50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~~~v~~~~~~~~g~ 123 (295)
+.+||||||.|+||+ ||++++++|+|+|.|+++++.+++.+++|+|++++++ ++++..+..+.++. ||
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~v~iv~------GG 74 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSKKKVKIVE------GG 74 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHHTTEEEEE--------
T ss_pred CEEEEeCCccchhcCcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcCCCEEEec------CC
Confidence 579999999999997 7999999999999999999999999999999998654 34444443333332 44
Q ss_pred H---HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555 124 T---ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI 200 (295)
Q Consensus 124 ~---~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~ 200 (295)
. .|+++||..+....|.|++|++.+||++++.|+++++...++.++++.+ .++. ++++. .+++|.+.
T Consensus 75 ~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~--~p~~-------DTik~-v~~~~~v~ 144 (221)
T PF01128_consen 75 ATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPA--LPVT-------DTIKR-VDDDGFVT 144 (221)
T ss_dssp SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEE--EE-S-------SEEEE-ESTTSBEE
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEE--Eecc-------ccEEE-EecCCccc
Confidence 3 5789999998755689999999999999999999999998744554443 3442 46664 56677765
Q ss_pred EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCH
Q 022555 201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP 279 (295)
Q Consensus 201 ~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtp 279 (295)
. . .+|+..+..||| |.|+.+.|.. +..........+|+.. -+...|.+|++++++..+++||||
T Consensus 145 ~---t---ldR~~l~~~QTP-------Q~F~~~~l~~a~~~a~~~~~~~tDdas--l~~~~g~~v~~V~G~~~N~KIT~p 209 (221)
T PF01128_consen 145 E---T---LDRSKLWAVQTP-------QAFRFELLLEAYEKADEEGFEFTDDAS--LVEAAGKKVAIVEGSPRNIKITTP 209 (221)
T ss_dssp E---E---ETGGGEEEEEEE-------EEEEHHHHHHHHHTHHHHTHHHSSHHH--HHHHTTS-EEEEE--TTG----SH
T ss_pred c---c---CCHHHeeeecCC-------CeecHHHHHHHHHHHHhcCCCccCHHH--HHHHcCCCEEEEeCCCCceeECCH
Confidence 2 2 278888899999 9999999886 3332111234455431 123379999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 022555 280 EDVEKIESFMRE 291 (295)
Q Consensus 280 eDl~~ae~ll~~ 291 (295)
+||..||.++++
T Consensus 210 eDl~~ae~ll~~ 221 (221)
T PF01128_consen 210 EDLELAEALLKQ 221 (221)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999975
No 8
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.96 E-value=7.2e-29 Score=218.76 Aligned_cols=218 Identities=16% Similarity=0.237 Sum_probs=163.4
Q ss_pred CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHH---HHHHHHcCCeEEeCCCCCC
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI---AECCQQFGADVIMTSESCR 121 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i---~~~~~~~~~~v~~~~~~~~ 121 (295)
+++.+||||||.|+||+ ||+|++++|+|+|+|+++++.+.+.+++|+|+++++.. +...+.++..+.+.. ...
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~-gg~ 101 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFAL-PGK 101 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcC-CCC
Confidence 35789999999999996 89999999999999999999886679999999985432 233344554443322 122
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~ 201 (295)
+...+++.|+..+..+.+.|+++++++||++++.|+++++...+. ++++.. .++. ++++. .++++.+.
T Consensus 102 ~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~-ga~i~~--~~~~-------dtik~-v~~~~~v~- 169 (252)
T PLN02728 102 ERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVH-GAAVLG--VPVK-------ATIKE-ANSDSFVV- 169 (252)
T ss_pred chHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhC-CeEEEe--ecch-------hhEEE-ecCCCcee-
Confidence 335679999998854467899999999999999999999988765 333332 3332 35664 45566553
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCCCH
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAP 279 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idIdtp 279 (295)
+. + +|+..+..||| |+|+.+.|.. +......+...+|.. .++ ..|.+|.+++++..+++||||
T Consensus 170 --~t--~-~R~~l~~~QTP-------Q~F~~~~l~~a~~~~~~~~~~~TDd~---~~~~~~g~~V~~v~g~~~N~KITtp 234 (252)
T PLN02728 170 --KT--L-DRKRLWEMQTP-------QVIKPELLRRGFELVEREGLEVTDDV---SIVEALKHPVFITEGSYTNIKVTTP 234 (252)
T ss_pred --ec--c-ChHHeEEEeCC-------ccchHHHHHHHHHHHHhcCCCcCcHH---HHHHHcCCceEEEecCcccccCCCH
Confidence 22 2 78899999999 9999999886 444333344556653 233 379999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 022555 280 EDVEKIESFMRERN 293 (295)
Q Consensus 280 eDl~~ae~ll~~r~ 293 (295)
+||..|+.+++++.
T Consensus 235 eDl~~a~~~l~~~~ 248 (252)
T PLN02728 235 DDMLVAERILNERS 248 (252)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999998763
No 9
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.96 E-value=1.6e-27 Score=207.08 Aligned_cols=209 Identities=25% Similarity=0.312 Sum_probs=158.5
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEE-eCCCC----CCCcHHH
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVI-MTSES----CRNGTER 126 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~-~~~~~----~~g~~~~ 126 (295)
+||||+|+|+||++|++++++|+||+.|+++++.+++.+++|+|+++++++.++++++|+.++ .+++. ..+...+
T Consensus 2 aiIpArG~Skr~~~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~~i~~~a~~~g~~v~~~r~~~l~~d~~~~~~s 81 (222)
T TIGR03584 2 AIIPARGGSKRIPRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEEIAEVAKSYGASVPFLRPKELADDFTGTAPV 81 (222)
T ss_pred EEEccCCCCCCCCCccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHcCCEeEEeChHHHcCCCCCchHH
Confidence 799999999999999999999999999999999998889999999999999999988888764 34432 2344567
Q ss_pred HHHHHHHccc--cCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEee
Q 022555 127 CNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFS 203 (295)
Q Consensus 127 i~~al~~~~~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~ 203 (295)
+.+++..+.. +.|.++++++|+||+++++|+++++.+.++ .|+++++. +.. .+|.+. ...+++|....+.
T Consensus 82 i~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~--~~~----~~~~~~-~~~~~~g~~~~~~ 154 (222)
T TIGR03584 82 VKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVT--SFA----FPIQRA-FKLKENGGVEMFF 154 (222)
T ss_pred HHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEee--ccC----CChHHh-eEECCCCcEEecC
Confidence 8899887742 368999999999999999999999999764 57777663 321 123222 2345677765443
Q ss_pred cCCCCCCCCCCCCCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCCCHH
Q 022555 204 RGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPE 280 (295)
Q Consensus 204 ~~~i~~~r~~~~~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdtpe 280 (295)
.... ..++|+.| +..|.++|+++++.+..... . .|.++..++++ ...+|||+++
T Consensus 155 ~~~~-----~~~rQd~~~~y~~nga~y~~~~~~~~~~~~----------------~--~~~~~~~~~m~~~~~iDID~~~ 211 (222)
T TIGR03584 155 PEHF-----NTRSQDLEEAYHDAGQFYWGKSQAWLESGP----------------I--FSPHSIPIVLPRHLVQDIDTLE 211 (222)
T ss_pred CCcc-----cCCCCCCchheeeCCeEEEEEHHHHHhcCC----------------c--cCCCcEEEEeCccceeCCCCHH
Confidence 2211 13467877 45589999999997643211 1 24567777776 6899999999
Q ss_pred HHHHHHHHHH
Q 022555 281 DVEKIESFMR 290 (295)
Q Consensus 281 Dl~~ae~ll~ 290 (295)
||+.||.+++
T Consensus 212 D~~~ae~l~~ 221 (222)
T TIGR03584 212 DWERAELLYK 221 (222)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 10
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.96 E-value=7.4e-28 Score=210.41 Aligned_cols=215 Identities=15% Similarity=0.245 Sum_probs=155.8
Q ss_pred CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHH---HHHHHcCCe---EEeCCC
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQQFGAD---VIMTSE 118 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~---~~~~~~~~~---v~~~~~ 118 (295)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++.+++.+++|+|++++++.. +.+++++.. +....
T Consensus 1 ~~~~~iIlAaG~g~R~g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~- 79 (230)
T PRK13385 1 MNYELIFLAAGQGKRMNAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVK- 79 (230)
T ss_pred CceEEEEECCeeccccCCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcC-
Confidence 45789999999999995 899999999999999999998876799999999865433 344555431 11111
Q ss_pred CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCe
Q 022555 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~ 198 (295)
...+...++..|+..+. +.+.+++++||+||+++++++++++.+.++ +..+++ .+++ +++++. ++|.
T Consensus 80 ~g~~r~~sv~~gl~~~~-~~d~vli~~~d~P~i~~~~i~~li~~~~~~-~~~~~~--~~~~-------dti~~~--~~~~ 146 (230)
T PRK13385 80 GGTERQESVAAGLDRIG-NEDVILVHDGARPFLTQDIIDRLLEGVAKY-GAAICA--VEVK-------DTVKRV--KDKQ 146 (230)
T ss_pred CCchHHHHHHHHHHhcc-CCCeEEEccCCCCCCCHHHHHHHHHHHhhC-CcEEEE--Eecc-------ceEEEE--cCCe
Confidence 11233467899998875 357899999999999999999999988765 333333 2332 345543 2454
Q ss_pred EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC-CCcccchhhhhhhhhCCceEEEEEecCCcCCCC
Q 022555 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT-PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVD 277 (295)
Q Consensus 199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~-~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idId 277 (295)
+. +.+ +|+..+..|+| |.|+.+.|..+...... ....+|. ...+...|.+|++++++..+++||
T Consensus 147 ~~----~~i--~r~~~~~~qtp-------q~f~~~~l~~~~~~~~~~~~~~td~--~~~~~~~g~~v~~v~~~~~n~kIt 211 (230)
T PRK13385 147 VI----ETV--DRNELWQGQTP-------QAFELKILQKAHRLASEQQFLGTDE--ASLVERSPHPVKLVQGSYYNIKLT 211 (230)
T ss_pred eE----ecc--CHHHHhhhcCC-------ceeeHHHHHHHHHHHHhcCCCcCcH--HHHHHHcCCCEEEEECCcccCcCC
Confidence 42 222 57778888899 99999998864432211 2223442 233445799999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 022555 278 APEDVEKIESFMRE 291 (295)
Q Consensus 278 tpeDl~~ae~ll~~ 291 (295)
||+||+.|+.+++.
T Consensus 212 t~eDl~~a~~~l~~ 225 (230)
T PRK13385 212 TPEDMPLAKAILQG 225 (230)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999975
No 11
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3.1e-27 Score=204.04 Aligned_cols=217 Identities=21% Similarity=0.303 Sum_probs=169.7
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHH---HHcCCeEEeCCCC
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECC---QQFGADVIMTSES 119 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~---~~~~~~v~~~~~~ 119 (295)
+||||||.|||+. +|+|+|+.+||||+|.++.|..+ ++++|.|+++. +.+.++. .++++++.+-.+.
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~a-GI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~ 81 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQP 81 (286)
T ss_pred cEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHc-CCceEEEEecCCchhhhhhhhcCccccCcceEEEecC
Confidence 9999999999995 69999999999999999999998 59999999975 3444444 2456666443334
Q ss_pred CCCcH-HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCceEEE-ECCC
Q 022555 120 CRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCV-VDNH 196 (295)
Q Consensus 120 ~~g~~-~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~v~-~d~~ 196 (295)
.+.|. .++..|-.++. ++.|+++.+|.-|.. .+.++++.+.+ ..++.+ ...++ .+|.+++|. .|++
T Consensus 82 ~p~GlA~Av~~a~~fv~--~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i--~~~~V-----~dP~rfGV~e~d~~ 150 (286)
T COG1209 82 EPDGLAHAVLIAEDFVG--DDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATI--LLYEV-----DDPSRYGVVEFDED 150 (286)
T ss_pred CCCcHHHHHHHHHhhcC--CCceEEEecCceecc--ChHHHHHHHhccCCCcEE--EEEEc-----CCcccceEEEEcCC
Confidence 44554 56777777873 578999999996654 89999988875 334433 33454 478888775 6778
Q ss_pred CeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEecCCc
Q 022555 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEA 273 (295)
Q Consensus 197 g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~ 273 (295)
|+++.+.|||. ++.+++.-+|+|+|++.+++....+.|+ ++|+||.+. .++..|..+....+.++|
T Consensus 151 ~~v~~l~EKP~---------~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~--~~i~~G~~~~~~~~~G~W 219 (286)
T COG1209 151 GKVIGLEEKPK---------EPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAID--LYIEKGYLVVAILIRGWW 219 (286)
T ss_pred CcEEEeEECCC---------CCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHH--HHHHcCcEEEEEEccceE
Confidence 89999999863 2346889999999999999988777766 588888753 457799999988888899
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 022555 274 HGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 274 idIdtpeDl~~ae~ll~~ 291 (295)
+|++|++||..|+.++..
T Consensus 220 lDtGt~~slleA~~~i~~ 237 (286)
T COG1209 220 LDTGTPESLLEANNFVRT 237 (286)
T ss_pred EecCChhhHHHHHHHHHH
Confidence 999999999999988764
No 12
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.96 E-value=9.7e-27 Score=201.76 Aligned_cols=211 Identities=28% Similarity=0.375 Sum_probs=149.6
Q ss_pred ceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCe-EEeCCCCC----CCc
Q 022555 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD-VIMTSESC----RNG 123 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~-v~~~~~~~----~g~ 123 (295)
++.+||||||+|+||++|+|++++|+|||+|+++.+.+++.+++|+|+++++++.+.+.++++. ++.++... .+.
T Consensus 1 ~~~~iIlA~G~s~R~~~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (223)
T cd02513 1 KILAIIPARGGSKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIAEVARKYGAEVPFLRPAELATDTASS 80 (223)
T ss_pred CeEEEEecCCCCCCCCCcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHhCCCceeeCChHHCCCCCCc
Confidence 4679999999999999999999999999999999999886689999999888888877777763 33333222 233
Q ss_pred HHHHHHHHHHccc---cCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeE
Q 022555 124 TERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA 199 (295)
Q Consensus 124 ~~~i~~al~~~~~---~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v 199 (295)
..++.++++.+.. +.+.+++++||+||+++++++++++.+.++ .++++++ .+... .| +.....+++| .
T Consensus 81 ~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~--~~~~~----~~-~~~~~~~~~~-~ 152 (223)
T cd02513 81 IDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSV--TEFHR----FP-WRALGLDDNG-L 152 (223)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEE--EecCc----Cc-HHheeeccCC-c
Confidence 4678888887642 247999999999999999999999998753 4555544 33321 11 2222223333 1
Q ss_pred EEeecCCCCCCCCCCCCCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCC
Q 022555 200 IYFSRGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGV 276 (295)
Q Consensus 200 ~~~~~~~i~~~r~~~~~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idI 276 (295)
..... ..+...++|++| +..|.|+|+|+.+.+..... . .|.++..++.+ ...+||
T Consensus 153 ~~~~~----~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~----------------~--~g~~~~~~~~~~~~~~dI 210 (223)
T cd02513 153 EPVNY----PEDKRTRRQDLPPAYHENGAIYIAKREALLESNS----------------F--FGGKTGPYEMPRERSIDI 210 (223)
T ss_pred eeccC----cccccCCcCCChhHeeECCEEEEEEHHHHHhcCC----------------c--cCCCeEEEEeCccceeCC
Confidence 11111 123345677777 45578899999997643211 1 36677666665 589999
Q ss_pred CCHHHHHHHHHHH
Q 022555 277 DAPEDVEKIESFM 289 (295)
Q Consensus 277 dtpeDl~~ae~ll 289 (295)
||++||+.||.++
T Consensus 211 ~~~~D~~~ae~~~ 223 (223)
T cd02513 211 DTEEDFELAEALL 223 (223)
T ss_pred CCHHHHHHHHHhC
Confidence 9999999999864
No 13
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.96 E-value=1.6e-27 Score=204.84 Aligned_cols=214 Identities=22% Similarity=0.336 Sum_probs=161.2
Q ss_pred CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHH---HHHH-HcCCeEEeCCCC
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQ-QFGADVIMTSES 119 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~---~~~~-~~~~~v~~~~~~ 119 (295)
+|++.+||||||.|+||+ ||++++++|+||++|+++.+..++.+++|+|+++.++.. ++.. ..+-.+..
T Consensus 2 ~~~~~~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~~---- 77 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEV---- 77 (230)
T ss_pred CceEEEEEEcCccccccCCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhccCCeEEE----
Confidence 467889999999999997 899999999999999999999999999999999864433 3321 11122211
Q ss_pred CCCcH---HHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECC
Q 022555 120 CRNGT---ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN 195 (295)
Q Consensus 120 ~~g~~---~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~ 195 (295)
..||. .+++++++.+.. +.++||+|++.+||++.+.|+++++...+ .++++.+ .++. ++.|. .++
T Consensus 78 v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~-~~aai~a--lpv~-------DTik~-~~~ 146 (230)
T COG1211 78 VKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADK-YGAAILA--LPVT-------DTLKR-VDA 146 (230)
T ss_pred ecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhcc-CCcEEEE--eecc-------CcEEE-ecC
Confidence 22444 468999998863 47899999999999999999999954443 3444433 4443 45653 455
Q ss_pred CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCCCcccchhhhhhhhh-CCceEEEEEecCCc
Q 022555 196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEA 273 (295)
Q Consensus 196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~~~~~d~~~~~~~~~-~G~~v~~v~~~~~~ 273 (295)
+|.+.. . ++|+..|..||| |.|+.+.|...+. ......+.+|+. .+++ .|.+|.+++++..+
T Consensus 147 ~~~i~~---t---~~R~~l~~~QTP-------Q~F~~~~L~~a~~~a~~~~~~~tDda---s~~e~~G~~v~lV~G~~~n 210 (230)
T COG1211 147 DGNIVE---T---VDRSGLWAAQTP-------QAFRLELLKQALARAFAEGREITDDA---SAIEKAGGPVSLVEGSADN 210 (230)
T ss_pred CCCeee---c---cChhhhhhhhCC-------ccccHHHHHHHHHHHHhcCCCcCCHH---HHHHHcCCCeEEEecCcce
Confidence 666652 2 388899999999 9999999986443 322334556653 2333 69999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 022555 274 HGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 274 idIdtpeDl~~ae~ll~~ 291 (295)
++|+||+||+.|+.++.+
T Consensus 211 ~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 211 FKITTPEDLEIAEAILRR 228 (230)
T ss_pred eEecCHHHHHHHHHHhcC
Confidence 999999999999999875
No 14
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.95 E-value=1.5e-26 Score=201.72 Aligned_cols=216 Identities=21% Similarity=0.327 Sum_probs=153.4
Q ss_pred CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcC---CeE-EeCCCC
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG---ADV-IMTSES 119 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~---~~v-~~~~~~ 119 (295)
+|++.+||||||.|+||+ +|+|++++|+|||+|+++++.+++.+++|+|+++++.+..+.+... ..+ +...
T Consensus 1 ~~~~~~iILAaG~s~R~g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMGADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAG-- 78 (227)
T ss_pred CCceEEEEEcCccccccCCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCC--
Confidence 577899999999999994 8999999999999999999988766999999999766544433221 112 1211
Q ss_pred CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeE
Q 022555 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA 199 (295)
Q Consensus 120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v 199 (295)
..+...++..|+..+. +.|.+++++||+||+++++++++++.+.++ +.++.+ .++. +.++.+ +++|.+
T Consensus 79 ~~~~~~sv~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~-~~~~~~--~~~~-------~~~~~v-~~~g~~ 146 (227)
T PRK00155 79 GAERQDSVLNGLQALP-DDDWVLVHDAARPFLTPDDIDRLIEAAEET-GAAILA--VPVK-------DTIKRS-DDGGGI 146 (227)
T ss_pred cchHHHHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhC-CCEEEE--Eecc-------ccEEEE-cCCCce
Confidence 1134567888988874 357999999999999999999999988765 443333 2331 224433 556665
Q ss_pred EEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCC
Q 022555 200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVD 277 (295)
Q Consensus 200 ~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idId 277 (295)
... + +|+..+..|+| |+|+.+.|..+.. ....++..+|.. .++ ..|.++..++.+..++|||
T Consensus 147 ~~~-----~-~r~~~~~~~~p-------~~f~~~~l~~~~~~~~~~~~~~~d~~---~~~~~~~~~i~~~~~~~~~~~Id 210 (227)
T PRK00155 147 VDT-----P-DRSGLWAAQTP-------QGFRIELLREALARALAEGKTITDDA---SAVERLGKPVRLVEGRYDNIKIT 210 (227)
T ss_pred eec-----C-ChHHheeeeCC-------ccchHHHHHHHHHHHHhcCCCcCcHH---HHHHHcCCCeEEEecCcccccCC
Confidence 421 2 44444455566 9999999886543 222233334432 222 3688899999888899999
Q ss_pred CHHHHHHHHHHHHHh
Q 022555 278 APEDVEKIESFMRER 292 (295)
Q Consensus 278 tpeDl~~ae~ll~~r 292 (295)
||+||+.||.++++|
T Consensus 211 t~~Dl~~ae~~~~~~ 225 (227)
T PRK00155 211 TPEDLALAEAILKRR 225 (227)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999876
No 15
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=3.6e-26 Score=190.44 Aligned_cols=218 Identities=20% Similarity=0.225 Sum_probs=168.3
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeE-EeCCCCCCCcHH
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADV-IMTSESCRNGTE 125 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v-~~~~~~~~g~~~ 125 (295)
||+..|||||+|+|+|.++|++..++|+|||.|++++++.++.+|+|+|.+++++|.+.++++|+.+ +.+|+++..+.+
T Consensus 1 ~~~~iAiIpAR~gSKgI~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~Rp~~LA~D~a 80 (228)
T COG1083 1 MMKNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKRPKELASDRA 80 (228)
T ss_pred CcceEEEEeccCCCCcCCccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHHHHHHHHHhCccccccCChhhccCch
Confidence 5788999999999999999999999999999999999999999999999999999999999999998 788877766543
Q ss_pred H----HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555 126 R----CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI 200 (295)
Q Consensus 126 ~----i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~ 200 (295)
+ +.++++......+.++.++++.||++..+|++.++.|.+ ..+++++++ +.. .+| +|-..+++|.+.
T Consensus 81 st~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~--e~e----~~p--~k~f~~~~~~~~ 152 (228)
T COG1083 81 STIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAV--ECE----HHP--YKAFSLNNGEVK 152 (228)
T ss_pred hHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEe--ecc----cch--HHHHHhcCCcee
Confidence 2 456666665556789999999999999999999999976 356777663 432 122 222344567776
Q ss_pred EeecCCCCCCCCCCCCCCCCc--eEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCC
Q 022555 201 YFSRGLIPYNKSGKVNPQFPY--LLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVD 277 (295)
Q Consensus 201 ~~~~~~i~~~r~~~~~~~~p~--~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idId 277 (295)
.+.+.+-. .+++|+.|. .-|..+|+++.+.|.+-.. . .+.+..+++++ ...+|||
T Consensus 153 ~~~~~~~~----~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~~----------------~--f~~~~~~y~m~~~~~~DID 210 (228)
T COG1083 153 PVNEDPDF----ETRRQDLPKAYRENGAIYINKKDALLENDC----------------F--FIPNTILYEMPEDESIDID 210 (228)
T ss_pred ecccCCcc----ccccccchhhhhhcCcEEEehHHHHhhcCc----------------e--ecCCceEEEcCcccccccc
Confidence 55444211 255788885 4478999999987642211 1 23345566665 6899999
Q ss_pred CHHHHHHHHHHHHHhcC
Q 022555 278 APEDVEKIESFMRERNL 294 (295)
Q Consensus 278 tpeDl~~ae~ll~~r~~ 294 (295)
+++||+.||.++..++.
T Consensus 211 ~~~Dl~iae~l~~~~~~ 227 (228)
T COG1083 211 TELDLEIAENLIFLKEE 227 (228)
T ss_pred cHHhHHHHHHHhhhhhc
Confidence 99999999999987654
No 16
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=2.7e-25 Score=201.98 Aligned_cols=231 Identities=22% Similarity=0.286 Sum_probs=172.2
Q ss_pred CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc-CCeEEeCCCCCC
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-GADVIMTSESCR 121 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~-~~~v~~~~~~~~ 121 (295)
|+..+||||||+|+||. ||-|.+++|+||++|+++++... ..+++++|.+ .+.+++.+.+. ++.++.+.+ ..
T Consensus 1 ~~~~~vILAAGkGTRMkS~lPKVLH~vaGkpMl~hVi~~a~~l-~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q~e-ql 78 (460)
T COG1207 1 MSLSAVILAAGKGTRMKSDLPKVLHPVAGKPMLEHVIDAARAL-GPDDIVVVVGHGAEQVREALAERDDVEFVLQEE-QL 78 (460)
T ss_pred CCceEEEEecCCCccccCCCcccchhccCccHHHHHHHHHhhc-CcceEEEEEcCCHHHHHHHhccccCceEEEecc-cC
Confidence 45679999999999996 89999999999999999999987 4889998887 46666655533 377766644 33
Q ss_pred CcHHHHHHHHHHcccc-CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeE
Q 022555 122 NGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYA 199 (295)
Q Consensus 122 g~~~~i~~al~~~~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v 199 (295)
|..++++.|+..+..+ ...+|++.+|.||+++++|++|++.+.+.. +.++++.... .+|..| +++.+++|.+
T Consensus 79 GTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~-~~~tvLt~~~-----~dP~GYGRIvr~~~g~V 152 (460)
T COG1207 79 GTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHG-AAATVLTAEL-----DDPTGYGRIVRDGNGEV 152 (460)
T ss_pred ChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcC-CceEEEEEEc-----CCCCCcceEEEcCCCcE
Confidence 4456788899888423 347999999999999999999999887542 2334444443 466655 4456778888
Q ss_pred EEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCC----CCCCcccchhhhhhhhhCCceEEEEEec--CC
Q 022555 200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLH----PTPLQLEEDLEQLKVLENGYKMKVIKVD--HE 272 (295)
Q Consensus 200 ~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~----~~~~~~~d~~~~~~~~~~G~~v~~v~~~--~~ 272 (295)
..+.| +++....|+....+|+|+|+|+.+.|.++. ++. +.++.++|-+.. +...|.+|..+..+ .+
T Consensus 153 ~~IVE-----~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i--~~~~g~~V~a~~~~d~~E 225 (460)
T COG1207 153 TAIVE-----EKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAI--ARNEGEKVRAVHVDDEEE 225 (460)
T ss_pred EEEEE-----cCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHH--HHhCCCeEEEEecCchHH
Confidence 87655 445544566678999999999999887643 333 224444554421 22378999999875 47
Q ss_pred cCCCCCHHHHHHHHHHHHHhc
Q 022555 273 AHGVDAPEDVEKIESFMRERN 293 (295)
Q Consensus 273 ~idIdtpeDl~~ae~ll~~r~ 293 (295)
.+.|++...|..+|++|++|.
T Consensus 226 ~~GVN~R~qLa~~e~~~q~r~ 246 (460)
T COG1207 226 VLGVNDRVQLAEAERIMQRRI 246 (460)
T ss_pred hcCcCcHHHHHHHHHHHHHHH
Confidence 899999999999999999883
No 17
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=5.7e-25 Score=210.45 Aligned_cols=229 Identities=17% Similarity=0.212 Sum_probs=160.5
Q ss_pred ceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCc
Q 022555 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG 123 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~ 123 (295)
++.+||||||+|+||+ ||+|++++|+|||+|+++++++. .+++|+|+++. +.+.+++...++.++.++ ...|.
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~-~~~Gt 82 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLLGEPMLRFVYRALRPL-FGDNVWTVVGHRADMVRAAFPDEDARFVLQE-QQLGT 82 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccCCCcHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhccccCceEEEcC-CCCCc
Confidence 3679999999999995 89999999999999999999887 48899888864 555555544456666553 23455
Q ss_pred HHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555 124 TERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202 (295)
Q Consensus 124 ~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~ 202 (295)
..++..++..+.. +.+.+++++||+||+++++++.+++.+. ..+.. +...++ .+|..++++..++|++..|
T Consensus 83 ~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~-~~~~~--l~~~~~-----~~~~~~g~v~~~~g~V~~~ 154 (456)
T PRK14356 83 GHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA-GADLA--FMTLTL-----PDPGAYGRVVRRNGHVAAI 154 (456)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh-cCCEE--EEEEEc-----CCCCCceEEEEcCCeEEEE
Confidence 5678888887742 2478999999999999999999998876 33333 322333 2344555555568899888
Q ss_pred ecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCC----CCCcccchhhhhhhhhCCceEEEEEecC--CcCC
Q 022555 203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHP----TPLQLEEDLEQLKVLENGYKMKVIKVDH--EAHG 275 (295)
Q Consensus 203 ~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~~--~~id 275 (295)
.+++-. +.......+..+++|+|+|++++|..+. .+.. .+++.++.+. .++..|.++..+..+. .|+|
T Consensus 155 ~ek~~~---~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~--~~~~~g~~v~~~~~~~~~~~~~ 229 (456)
T PRK14356 155 VEAKDY---DEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVG--LAVAEGMNVLGVNCGEDPNLLG 229 (456)
T ss_pred EECCCC---ChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHH--HHHHCCCeEEEEEcCCcCeEec
Confidence 776421 1000111245789999999999876542 2211 1233333321 2335788999998753 6799
Q ss_pred CCCHHHHHHHHHHHHHh
Q 022555 276 VDAPEDVEKIESFMRER 292 (295)
Q Consensus 276 IdtpeDl~~ae~ll~~r 292 (295)
||||+||..|+.++.++
T Consensus 230 I~tp~dl~~a~~~l~~~ 246 (456)
T PRK14356 230 VNTPAELVRSEELLRAR 246 (456)
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999999865
No 18
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.94 E-value=1.6e-25 Score=193.80 Aligned_cols=208 Identities=20% Similarity=0.348 Sum_probs=146.4
Q ss_pred EEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcC----CeEEeCCCCCCCcH
Q 022555 52 GIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG----ADVIMTSESCRNGT 124 (295)
Q Consensus 52 aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~----~~v~~~~~~~~g~~ 124 (295)
+||||||.|+||+ ||+|++++|+|||+|+++++.+++.+++|+|+++++....+....+ +.++ .. ..+..
T Consensus 2 aiIlAaG~s~R~~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~ 78 (217)
T TIGR00453 2 AVIPAAGRGTRFGSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVARAVPKIV-AG--GDTRQ 78 (217)
T ss_pred EEEEcCcccccCCCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcCCcEEEe-CC--CchHH
Confidence 7999999999997 7999999999999999999998756999999998764433322222 2222 11 11244
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeec
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR 204 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~ 204 (295)
.+++.|+..+. +.|.+++++||+||+++++++++++.+.++ +.++.+ .++. +.++ .++++|.+..+.
T Consensus 79 ~sl~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~-~~~~~~--~~~~-------~~v~-~~~~~g~~~~~~- 145 (217)
T TIGR00453 79 DSVRNGLKALK-DAEWVLVHDAARPFVPKELLDRLLEALRKA-GAAILA--LPVA-------DTLK-RVEADGFIVETV- 145 (217)
T ss_pred HHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhC-CcEEEe--Eecc-------ceEE-EEcCCCceeecC-
Confidence 67888998772 358999999999999999999999988764 332222 2321 2333 245667654321
Q ss_pred CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHH
Q 022555 205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE 283 (295)
Q Consensus 205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~ 283 (295)
+|+..+..++| |+|+.+.|..+.. ....+++.+|.... +...|.++..++++..++|||||+||+
T Consensus 146 -----~r~~~~~~~~p-------~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~i~~~~~~~~~~~I~~~~Dl~ 211 (217)
T TIGR00453 146 -----DREGLWAAQTP-------QAFRTELLKKALARAKEEGFEITDDASA--VEKLGGKVALVEGDALNFKITTPEDLA 211 (217)
T ss_pred -----ChHHeEEEeCC-------CcccHHHHHHHHHHHHhcCCCCCcHHHH--HHHcCCCeEEEecCccccccCCHHHHH
Confidence 34334444455 9999999886543 23334555655432 234689999999988889999999999
Q ss_pred HHHHHH
Q 022555 284 KIESFM 289 (295)
Q Consensus 284 ~ae~ll 289 (295)
.|++++
T Consensus 212 ~ae~~~ 217 (217)
T TIGR00453 212 LAEALL 217 (217)
T ss_pred HHHHhC
Confidence 999864
No 19
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.94 E-value=3.1e-24 Score=193.88 Aligned_cols=222 Identities=12% Similarity=0.108 Sum_probs=151.5
Q ss_pred ceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH------------
Q 022555 49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ------------ 108 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~------------ 108 (295)
++.|||||||.||||. ||+|+|++|+|+|+|+++.+.++ ++++|+|++++ +.+.++...
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~-Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLLEQRV 81 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEecCChHHHHHHHhchHHHHHHHHHhc
Confidence 4569999999999995 79999999999999999999987 59999999973 555555431
Q ss_pred -------------cCCeEEeCC-CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCH-------HHHHHHHHHHHhCC
Q 022555 109 -------------FGADVIMTS-ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP-------EIIDGVVKALQAAP 167 (295)
Q Consensus 109 -------------~~~~v~~~~-~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~-------~~i~~li~~~~~~~ 167 (295)
+++++.+.. ++..|..++++.|...++ .+.|+++.+|. ++++ .++.++++.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~--~~~flvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~~ 158 (297)
T TIGR01105 82 KRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG--DNPFVVVLPDI-IIDDATADPLRYNLAAMIARFNETG 158 (297)
T ss_pred chhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC--CCCEEEEECCe-eccccccccchhHHHHHHHHHHHhC
Confidence 244443322 223344467889998884 35688889997 5543 48889999886543
Q ss_pred CcEEEEeeeeCCCCCCCCCCceEEE-E----CCCCe---EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc
Q 022555 168 DAVFSTAVTSLKPEDAFDPNRVKCV-V----DNHGY---AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 239 (295)
Q Consensus 168 d~~v~v~~~~~~~~~~~~p~~~~v~-~----d~~g~---v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~ 239 (295)
..++.+ ..+. .++..++++ . |++|. |..|.|||.. + .+....++++|+|+|++++|..+.
T Consensus 159 ~~~~~~--~~~~----~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~-~-----~~~~s~~~~~GiYi~~~~i~~~l~ 226 (297)
T TIGR01105 159 RSQVLA--KRMP----GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQ-P-----QTLDSDLMAVGRYVLSADIWAELE 226 (297)
T ss_pred CcEEEE--EEcC----CCCccceEEEecccccCCCCeeeEeEEEECCCC-c-----ccCCcCEEEEEEEEECHHHHHHHh
Confidence 333322 2221 134556554 3 33564 4677787531 1 111246899999999999988665
Q ss_pred cCCCC---CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHH
Q 022555 240 GLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 289 (295)
Q Consensus 240 ~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll 289 (295)
...++ +++.+|.+ ..+..+.++..+..++.|+||++|+||..|+.-+
T Consensus 227 ~~~~~~~ge~~ltd~i---~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 227 RTEPGAWGRIQLTDAI---AELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred cCCCCCCCeeeHHHHH---HHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence 54332 34445543 2223345799998888999999999999996543
No 20
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.93 E-value=5.3e-24 Score=191.92 Aligned_cols=219 Identities=18% Similarity=0.228 Sum_probs=152.6
Q ss_pred eEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCeEEeCC
Q 022555 50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTS 117 (295)
Q Consensus 50 i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~v~~~~ 117 (295)
+.+||||||.||||. ||+|+|++|||||+|+++.+..+ ++++|+|++.. +.+.+++. ++++++.+..
T Consensus 4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~a-Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~ 82 (292)
T PRK15480 4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKV 82 (292)
T ss_pred eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCchHHHHHHHcCccccCceeEEEE
Confidence 669999999999994 79999999999999999999988 59999877642 44555543 3455542222
Q ss_pred CCCCCc-HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEE-EC
Q 022555 118 ESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCV-VD 194 (295)
Q Consensus 118 ~~~~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~-~d 194 (295)
+..+.| ..++..|...+. .+.++++.+|.+|. ..++..+++.+.+. .++ ++...++ .+|..++++ .|
T Consensus 83 q~~~~Gta~Al~~a~~~i~--~~~~~lv~gD~i~~-~~~l~~ll~~~~~~~~~~--tv~~~~v-----~~p~~yGvv~~d 152 (292)
T PRK15480 83 QPSPDGLAQAFIIGEEFIG--GDDCALVLGDNIFY-GHDLPKLMEAAVNKESGA--TVFAYHV-----NDPERYGVVEFD 152 (292)
T ss_pred CCCCCCHHHHHHHHHHHhC--CCCEEEEECCeeee-ccCHHHHHHHHHhCCCCe--EEEEEEc-----CCcccCcEEEEC
Confidence 222334 456778888884 24477888999775 45789999888653 233 3332343 245555553 57
Q ss_pred CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEecC
Q 022555 195 NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDH 271 (295)
Q Consensus 195 ~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~ 271 (295)
++|++..+.|||.. ......++|+|+|+++++.....+.++ +++++|.+. .++..|..+..+..++
T Consensus 153 ~~g~v~~i~EKP~~---------p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~--~~l~~g~~~~~~~~~g 221 (292)
T PRK15480 153 QNGTAISLEEKPLQ---------PKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINR--IYMEQGRLSVAMMGRG 221 (292)
T ss_pred CCCcEEEEEECCCC---------CCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHH--HHHhcCCeEEEEecCC
Confidence 78899989888531 124678999999999998876554443 355665432 3455676444445555
Q ss_pred -CcCCCCCHHHHHHHHHHHH
Q 022555 272 -EAHGVDAPEDVEKIESFMR 290 (295)
Q Consensus 272 -~~idIdtpeDl~~ae~ll~ 290 (295)
.|+|++||+||..|+.+++
T Consensus 222 ~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 222 YAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred cEEECCCCHHHHHHHHHHHH
Confidence 5999999999999999887
No 21
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.93 E-value=1.1e-24 Score=202.24 Aligned_cols=207 Identities=22% Similarity=0.286 Sum_probs=148.1
Q ss_pred CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc-CCe-EEeCCCCCC
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GAD-VIMTSESCR 121 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~-~~~-v~~~~~~~~ 121 (295)
||++.+||||||+|+||+ ||++++++|+|||+|+++++.+++.+++|+|+++++......... +.. +.... ...
T Consensus 3 mm~v~aIILAAG~GsRmg~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~~v~~v~-gG~ 81 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFSAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIKFVTLVT-GGA 81 (378)
T ss_pred CCcceEEEECCCCCccCCCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCCeEEEeC-CCc
Confidence 678899999999999995 799999999999999999999887689999999865433221111 111 11111 112
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~ 201 (295)
+...++++|++.+. .+++++++||+||++++.++++++.+.+. ++++.+ .+++ ++.+... .
T Consensus 82 ~r~~SV~~gL~~l~--~d~VLVhdadrPfv~~e~I~~li~~~~~~-~a~i~~--~pv~-------Dtik~~~-----~-- 142 (378)
T PRK09382 82 TRQESVRNALEALD--SEYVLIHDAARPFVPKELIDRLIEALDKA-DCVLPA--LPVA-------DTLKRAN-----E-- 142 (378)
T ss_pred hHHHHHHHHHHhcC--CCeEEEeeccccCCCHHHHHHHHHHhhcC-CeEEEE--EEec-------cCcEEee-----e--
Confidence 23467899999884 48999999999999999999999987654 444333 3432 1232110 0
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHH
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPED 281 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeD 281 (295)
..+|+..+..|+| |.|+...+....+ .+.+.+|... .+...|.+|.+++++..|+|||||+|
T Consensus 143 ------tldR~~l~~~QTP-------Q~f~~~~l~~a~~---~~~~~TDd~s--l~~~~G~~V~~v~g~~~n~KITtpeD 204 (378)
T PRK09382 143 ------TVDREGLKLIQTP-------QLSRTKTLKAAAD---GRGDFTDDSS--AAEAAGGKVALVEGSEDLHKLTYKED 204 (378)
T ss_pred ------EcCcccEEEEECC-------CCCCHHHHHHHHh---CCCCcccHHH--HHHHcCCcEEEEECCCcccCCCCHHH
Confidence 0156666667889 8998887764221 2344566542 23347999999999999999999999
Q ss_pred HHHHHHHHHH
Q 022555 282 VEKIESFMRE 291 (295)
Q Consensus 282 l~~ae~ll~~ 291 (295)
|..|+.+++.
T Consensus 205 L~~A~~~l~~ 214 (378)
T PRK09382 205 LKMADLLLSP 214 (378)
T ss_pred HHHHHHHhcc
Confidence 9999999865
No 22
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=4.1e-24 Score=204.02 Aligned_cols=231 Identities=17% Similarity=0.223 Sum_probs=158.2
Q ss_pred CCCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcC--CeEEeCCC
Q 022555 46 FRSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFG--ADVIMTSE 118 (295)
Q Consensus 46 ~~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~--~~v~~~~~ 118 (295)
.||++.+||||||.|+||+ ||+|++++|+|||+|+++++++++ +++|+|+++. +.+.+++.+++ +.++.. .
T Consensus 2 ~~~~~~aiILAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~g-i~~ivvv~~~~~~~i~~~~~~~~~~~~~~~~-~ 79 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKSSLPKVLHPVAGRPMLAHVLAAAASLG-PSRVAVVVGPGAEAVAAAAAKIAPDAEIFVQ-K 79 (446)
T ss_pred ccccceEEEEcCCCCCccCCCCCcccCEECCchHHHHHHHHHHhCC-CCcEEEEECCCHHHHHHHhhccCCCceEEEc-C
Confidence 4677899999999999995 899999999999999999999884 8999988873 55666555443 233332 2
Q ss_pred CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCe
Q 022555 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~ 198 (295)
...|...+++.++..+....+.+++++||+||++++.++.+++.+.+..+..+ ...+.. ++..+..+..++|+
T Consensus 80 ~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i--~~~~~~-----~~~~~g~~~~~~g~ 152 (446)
T PRK14353 80 ERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERLADGADVVV--LGFRAA-----DPTGYGRLIVKGGR 152 (446)
T ss_pred CCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcEEE--EEEEeC-----CCCcceEEEECCCe
Confidence 33455667888888774224679999999999999999999986554444433 223331 23334322225788
Q ss_pred EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC----CCCcccchhhhhhhhhCCceEEEEEec-CC
Q 022555 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVIKVD-HE 272 (295)
Q Consensus 199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~ 272 (295)
+..+.+++.+.+ .+......++|+|+|+++.|.. +..... .+...++.+ ..++..|.++.+++.+ ..
T Consensus 153 v~~~~ek~~~~~-----~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~--~~l~~~g~~v~~~~~~~~~ 225 (446)
T PRK14353 153 LVAIVEEKDASD-----EERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIV--AIARAEGLRVAVVEAPEDE 225 (446)
T ss_pred EEEEEECCCCCh-----HHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHH--HHHHHCCCeEEEEecChhh
Confidence 888877642100 0111256789999999877643 332211 122222322 2334578899999986 56
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q 022555 273 AHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 273 ~idIdtpeDl~~ae~ll~~r 292 (295)
|+|||||+||..|+++++.+
T Consensus 226 ~~~I~t~~dl~~a~~~~~~~ 245 (446)
T PRK14353 226 VRGINSRAELAEAEAVWQAR 245 (446)
T ss_pred cccCCCHHHHHHHHHHHHHH
Confidence 89999999999999888654
No 23
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.93 E-value=5e-24 Score=184.26 Aligned_cols=211 Identities=21% Similarity=0.253 Sum_probs=147.2
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH---cCCeE-EeCCCC
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ---FGADV-IMTSES 119 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~---~~~~v-~~~~~~ 119 (295)
|||||||.|+||+ ||+|++++|+|||+|+++.+.+. ++++|+|+++ .+.+.+++.. .++.+ +..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQ-GISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPE 79 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCC
Confidence 6899999999995 79999999999999999999987 4999999998 4556666543 24444 223333
Q ss_pred CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeE
Q 022555 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA 199 (295)
Q Consensus 120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v 199 (295)
..|...++..+++.+. .+.+++++||+|+ +.++.++++.+.+. +...++.+.+.. + .+....+..+++|++
T Consensus 80 ~~G~~~~l~~a~~~~~--~~~~lv~~~D~~~--~~~~~~~l~~~~~~-~~~~~~~~~~~~--~--~~~~~~v~~d~~~~v 150 (223)
T cd06915 80 PLGTGGAIKNALPKLP--EDQFLVLNGDTYF--DVDLLALLAALRAS-GADATMALRRVP--D--ASRYGNVTVDGDGRV 150 (223)
T ss_pred CCcchHHHHHHHhhcC--CCCEEEEECCccc--CCCHHHHHHHHHhC-CCcEEEEEEECC--C--CCcceeEEECCCCeE
Confidence 4455567888998883 4679999999976 35688898888653 222233333432 1 122334456778899
Q ss_pred EEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCH
Q 022555 200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP 279 (295)
Q Consensus 200 ~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtp 279 (295)
..+.+++. +......++|+|+|++++|..+.... ... .++.+ ..++..| +|.+++.++.|+|||||
T Consensus 151 ~~~~ek~~---------~~~~~~~~~Giy~~~~~~l~~~~~~~-~~~-~~~~~--~~l~~~~-~v~~~~~~~~~~dI~t~ 216 (223)
T cd06915 151 IAFVEKGP---------GAAPGLINGGVYLLRKEILAEIPADA-FSL-EADVL--PALVKRG-RLYGFEVDGYFIDIGIP 216 (223)
T ss_pred EEEEeCCC---------CCCCCcEEEEEEEECHHHHhhCCccC-CCh-HHHHH--HHHHhcC-cEEEEecCCeEEecCCH
Confidence 88877642 11246789999999999997654321 111 12222 1234456 89999988899999999
Q ss_pred HHHHHHH
Q 022555 280 EDVEKIE 286 (295)
Q Consensus 280 eDl~~ae 286 (295)
+||..|+
T Consensus 217 ~dl~~a~ 223 (223)
T cd06915 217 EDYARAQ 223 (223)
T ss_pred HHHHhhC
Confidence 9999873
No 24
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.93 E-value=1.4e-23 Score=184.28 Aligned_cols=217 Identities=19% Similarity=0.232 Sum_probs=148.3
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCeEEeCCC
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTSE 118 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~v~~~~~ 118 (295)
.+||||||.|+||. ||+|+|++|+|||+|+++++.+. ++++|+|+++. +.+.+++. ++++++.+..+
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQ 80 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEeCcchHHHHHHHHhcccccCceEEEeeC
Confidence 49999999999994 79999999999999999999987 59999998863 34555543 24555533322
Q ss_pred C-CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCceE-EEECC
Q 022555 119 S-CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVK-CVVDN 195 (295)
Q Consensus 119 ~-~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~-v~~d~ 195 (295)
. ..|...++..+...+. .+.++++.||+|+.+ .++.++++.+.+ +.+.. +...++. +|..+. +..|+
T Consensus 81 ~~~~G~~~al~~a~~~~~--~~~~lv~~gD~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~g~v~~d~ 150 (240)
T cd02538 81 PKPGGLAQAFIIGEEFIG--DDPVCLILGDNIFYG-QGLSPILQRAAAQKEGAT--VFGYEVN-----DPERYGVVEFDE 150 (240)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCEEEEECCEEEcc-HHHHHHHHHHHhcCCCcE--EEEEECC-----chhcCceEEecC
Confidence 2 2334456888888874 467899999998764 478899988764 33333 3333432 222333 34677
Q ss_pred CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEec--
Q 022555 196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVD-- 270 (295)
Q Consensus 196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~-- 270 (295)
+|++..+.+||. +.....+++|+|+|++++|+.+....++ +++.++.+. .++..| ++.+...+
T Consensus 151 ~g~v~~~~ekp~---------~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~--~l~~~g-~~~~~~~~~~ 218 (240)
T cd02538 151 NGRVLSIEEKPK---------KPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNN--EYLEKG-KLSVELLGRG 218 (240)
T ss_pred CCcEEEEEECCC---------CCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHH--HHHHhC-CeEEEEeCCC
Confidence 889998888742 1123578999999999988755433222 233334332 234455 34555544
Q ss_pred CCcCCCCCHHHHHHHHHHHH
Q 022555 271 HEAHGVDAPEDVEKIESFMR 290 (295)
Q Consensus 271 ~~~idIdtpeDl~~ae~ll~ 290 (295)
++|+||+||+||..|+++++
T Consensus 219 g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 219 FAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred cEEEeCCCHHHHHHHHHHHh
Confidence 79999999999999999875
No 25
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=1.9e-23 Score=200.22 Aligned_cols=231 Identities=18% Similarity=0.210 Sum_probs=162.9
Q ss_pred CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHc-CCeEEeCCCCC
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESC 120 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~-~~~v~~~~~~~ 120 (295)
|.++.+||||||.|+||+ ||+|++++|+|||+|+++++.++ +++++++++++ +++.+++.+. .+.++..+ ..
T Consensus 1 m~~~~avIlAaG~g~Rl~~~~pK~l~pi~g~pli~~~l~~l~~~-gi~~iiiv~~~~~~~i~~~~~~~~~i~~~~~~-~~ 78 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKSDLVKVMHPLAGRPMVSWPVAAAREA-GAGRIVLVVGHQAEKVREHFAGDGDVSFALQE-EQ 78 (459)
T ss_pred CCcceEEEEcCCCCcccCCCCCceeceeCCccHHHHHHHHHHhc-CCCeEEEEECCCHHHHHHHhccCCceEEEecC-CC
Confidence 345789999999999996 69999999999999999999988 59999998874 5566655432 33343332 23
Q ss_pred CCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeE
Q 022555 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYA 199 (295)
Q Consensus 121 ~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v 199 (295)
.|...++..++..+....+.++++++|+||+++++++++++.+... ++.+++...+. .+|..+ .+..|++|++
T Consensus 79 ~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~-~~~~~v~~~~~-----~~~~~~g~v~~d~~g~v 152 (459)
T PRK14355 79 LGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT-GAAVTVLTARL-----ENPFGYGRIVRDADGRV 152 (459)
T ss_pred CCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc-CCcEEEEEEEc-----CCCCcCCEEEEcCCCCE
Confidence 3445678888888753347899999999999999999999988754 44445443333 123333 3346778889
Q ss_pred EEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC----CCCcccchhhhhhhhhCCceEEEEEecCC--
Q 022555 200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVIKVDHE-- 272 (295)
Q Consensus 200 ~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~~~-- 272 (295)
..+.+++.. . .+++.....++|+|+|++++|.. +..+.+ .+.+.+|.+ ..++..|.++..++.+++
T Consensus 153 ~~~~ek~~~-~----~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i--~~l~~~g~~v~~~~~~~~~~ 225 (459)
T PRK14355 153 LRIVEEKDA-T----PEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIV--AMAAAEGLRCLAFPVADPDE 225 (459)
T ss_pred EEEEEcCCC-C----hhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHH--HHHHHCCCeEEEEEcCCHHH
Confidence 888776421 1 11222357899999999997644 332222 223344443 234567889999998765
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q 022555 273 AHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 273 ~idIdtpeDl~~ae~ll~~r 292 (295)
|+||++|+||..|+.++..+
T Consensus 226 ~~~i~~~~~~~~a~~~l~~~ 245 (459)
T PRK14355 226 IMGVNDRAQLAEAARVLRRR 245 (459)
T ss_pred hcCCCCHHHHHHHHHHHHHH
Confidence 99999999999998877653
No 26
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.4e-23 Score=194.46 Aligned_cols=221 Identities=21% Similarity=0.264 Sum_probs=158.5
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH---cCCeEEeCCCC
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ---FGADVIMTSES 119 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~---~~~~v~~~~~~ 119 (295)
.|||||||.||||. ||||+|++|||||+|+++.|++. ++++|+|+++ .+.+++++.+ .++.+.+..+.
T Consensus 3 kavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~-Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~ 81 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEK 81 (358)
T ss_pred eEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHC-CCcEEEEEeccchHHHHHHHhcccccCCceEEEecC
Confidence 49999999999994 79999999999999999999987 5999999997 4777777764 35665443333
Q ss_pred CC-CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEE-ECCC-
Q 022555 120 CR-NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VDNH- 196 (295)
Q Consensus 120 ~~-g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~-~d~~- 196 (295)
.+ |...++.++...+. .+.|+++++|. +.+. +++.+++.++++ +...++....+. +|..++++ .+++
T Consensus 82 ~~lGTag~l~~a~~~l~--~~~f~v~~GDv-~~~~-dl~~l~~~~~~~-~~~~~~~~~~~~-----~~~~~Gvv~~~~~~ 151 (358)
T COG1208 82 EPLGTAGALKNALDLLG--GDDFLVLNGDV-LTDL-DLSELLEFHKKK-GALATIALTRVL-----DPSEFGVVETDDGD 151 (358)
T ss_pred CcCccHHHHHHHHHhcC--CCcEEEEECCe-eecc-CHHHHHHHHHhc-cCccEEEEEecC-----CCCcCceEEecCCC
Confidence 33 43457889999885 37899999999 4444 499999999876 444444433332 22233333 3433
Q ss_pred CeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCC
Q 022555 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGV 276 (295)
Q Consensus 197 g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idI 276 (295)
+++..|.++|.+ ....+..+|+|+|+|++++|+.+....+.+++. |.+ ..++..|.++..+..+++|+||
T Consensus 152 ~~v~~f~ekp~~-------~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~-~~~--~~l~~~~~~v~~~~~~g~W~di 221 (358)
T COG1208 152 GRVVEFREKPGP-------EEPPSNLINAGIYIFDPEVFDYIEKGERFDFEE-ELL--PALAAKGEDVYGYVFEGYWLDI 221 (358)
T ss_pred ceEEEEEecCCC-------CCCCCceEEeEEEEECHHHhhhcccCCcccchh-hHH--HHHHhCCCcEEEEEeCCeEEeC
Confidence 589999998631 012247899999999999998333322233221 122 1334566679999988899999
Q ss_pred CCHHHHHHHHHHHHHh
Q 022555 277 DAPEDVEKIESFMRER 292 (295)
Q Consensus 277 dtpeDl~~ae~ll~~r 292 (295)
++|+||..|++++.++
T Consensus 222 g~p~d~~~a~~~~~~~ 237 (358)
T COG1208 222 GTPEDLLEANELLLRG 237 (358)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998863
No 27
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.92 E-value=5.1e-24 Score=187.51 Aligned_cols=221 Identities=22% Similarity=0.236 Sum_probs=158.2
Q ss_pred CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHH-HHHH----HHcCCeEE
Q 022555 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKI-AECC----QQFGADVI 114 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i-~~~~----~~~~~~v~ 114 (295)
..+.||||.||.|+|+- +||++|++++|||.|.++++.++ ++++|++.++ ++.+ .++. ..+|++++
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~ns-Gi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~ 86 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINS-GITKIVLATQYNSESLNRHLSKAYGKELGVEIL 86 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhC-CCcEEEEEEecCcHHHHHHHHHHhhhccceEEE
Confidence 34669999999999994 79999999999999999999998 5999999997 3322 2333 34577776
Q ss_pred eCCCCCCCcHHH-HHHHHHHccccCC-EEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-
Q 022555 115 MTSESCRNGTER-CNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC- 191 (295)
Q Consensus 115 ~~~~~~~g~~~~-i~~al~~~~~~~d-~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v- 191 (295)
.-.+..+.++.+ +..|-+.+....| .|+++++|. +-.-.+.++++.|+++ ++..++.++++. +|..|++
T Consensus 87 ~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDv--i~~~p~~~~vqfH~~~-gae~TI~~t~vd-----epSkyGvv 158 (371)
T KOG1322|consen 87 ASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDV--ICRMPYKEMVQFHRAH-GAEITIVVTKVD-----EPSKYGVV 158 (371)
T ss_pred EEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCe--eecCCHHHHHHHHHhc-CCceEEEEEecc-----CccccceE
Confidence 533333333332 2233333322223 799999998 3456789999999875 344566566663 2445544
Q ss_pred EECC-CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec
Q 022555 192 VVDN-HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD 270 (295)
Q Consensus 192 ~~d~-~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~ 270 (295)
+.|+ .|+|..|.|||..+ .....|+|+|+|++++|+.+. ..|++++.+ .+ +.+..+++++++..+
T Consensus 159 ~~d~~~grV~~F~EKPkd~---------vsnkinaGiYi~~~~vL~ri~-~~ptSiekE-if---P~~a~~~~l~a~~l~ 224 (371)
T KOG1322|consen 159 VIDEDTGRVIRFVEKPKDL---------VSNKINAGIYILNPEVLDRIL-LRPTSIEKE-IF---PAMAEEHQLYAFDLP 224 (371)
T ss_pred EEecCCCceeEehhCchhh---------hhccccceEEEECHHHHhHhh-hcccchhhh-hh---hhhhhcCceEEEecC
Confidence 3566 79999999996421 145678999999999999766 445554432 11 355677889999999
Q ss_pred CCcCCCCCHHHHHHHHHHHHH
Q 022555 271 HEAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 271 ~~~idIdtpeDl~~ae~ll~~ 291 (295)
++|.||++|.||..+-.++.+
T Consensus 225 gfWmDIGqpkdf~~g~~~Yl~ 245 (371)
T KOG1322|consen 225 GFWMDIGQPKDFLTGFSFYLR 245 (371)
T ss_pred chhhhcCCHHHHHHHHHHHHh
Confidence 999999999999999887765
No 28
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.92 E-value=4.9e-24 Score=184.33 Aligned_cols=207 Identities=22% Similarity=0.338 Sum_probs=145.6
Q ss_pred eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHH--Hc--CCeE-EeCCCCCC
Q 022555 50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ--QF--GADV-IMTSESCR 121 (295)
Q Consensus 50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~--~~--~~~v-~~~~~~~~ 121 (295)
+.+||||||+|+||+ +|++++++|+|||+|+++++.+++.+++|+|+++++....... .+ ...+ +... ..
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 78 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEG--GA 78 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcccCCCeEEECC--ch
Confidence 358999999999996 6999999999999999999998766899999998654433221 11 1122 2221 12
Q ss_pred CcHHHHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555 122 NGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI 200 (295)
Q Consensus 122 g~~~~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~ 200 (295)
+...++..|+..+. .+.+.+++++||+||+++++++++++.+.+. +..+.+ .++. +.++ ..|++|.+.
T Consensus 79 ~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~-~~~~~~--~~~~-------~~~~-~~~~~g~~~ 147 (218)
T cd02516 79 TRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEY-GAAIPA--VPVT-------DTIK-RVDDDGVVV 147 (218)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhC-CcEEEE--Eecc-------ccEE-EecCCCcee
Confidence 34567999999874 2468999999999999999999999988654 443333 2221 1222 256677775
Q ss_pred EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC-CCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCCC
Q 022555 201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL-HPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDA 278 (295)
Q Consensus 201 ~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~-~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idIdt 278 (295)
.+. +|+..+..++| ++|+.+.|..+... .......+|.. .++ ..|.++..++.+..++||||
T Consensus 148 ~~~------~r~~~~~~~~P-------~~f~~~~~~~~~~~~~~~~~~~td~~---~~~~~~~~~v~~v~~~~~~~~i~t 211 (218)
T cd02516 148 ETL------DREKLWAAQTP-------QAFRLDLLLKAHRQASEEGEEFTDDA---SLVEAAGGKVALVEGSEDNIKITT 211 (218)
T ss_pred ecC------ChHHhhhhcCC-------CcccHHHHHHHHHHHHhcCCCcCcHH---HHHHHcCCCeEEEecCcccccCCC
Confidence 321 45555566777 99999999875432 22334445432 233 36788999998888899999
Q ss_pred HHHHHHH
Q 022555 279 PEDVEKI 285 (295)
Q Consensus 279 peDl~~a 285 (295)
|+||+.|
T Consensus 212 ~~dl~~~ 218 (218)
T cd02516 212 PEDLALA 218 (218)
T ss_pred HHHHhhC
Confidence 9999764
No 29
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.92 E-value=1.6e-23 Score=188.36 Aligned_cols=217 Identities=18% Similarity=0.217 Sum_probs=149.7
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCeEEeCCCC
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTSES 119 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~v~~~~~~ 119 (295)
+||||||.|+||. ||+|+|++|+|||+|+++.+..+ ++++|+|++.. +.+.+++. ++++++.+..+.
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~a-Gi~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~ 80 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQP 80 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEecCCcHHHHHHHhccccccCceEEEEEcc
Confidence 8999999999994 79999999999999999999987 59999877753 34455443 245555333222
Q ss_pred -CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EECCCC
Q 022555 120 -CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDNHG 197 (295)
Q Consensus 120 -~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d~~g 197 (295)
..|...++..+...+. .+.++++.+|++|. ..++..+++.+.+. +...++...++ .+|..+++ ..|++|
T Consensus 81 ~~~Gta~al~~a~~~l~--~~~~~li~gD~i~~-~~~l~~ll~~~~~~-~~~~ti~~~~v-----~~p~~yGvv~~d~~g 151 (286)
T TIGR01207 81 SPDGLAQAFIIGEDFIG--GDPSALVLGDNIFY-GHDLSDLLKRAAAR-ESGATVFAYQV-----SDPERYGVVEFDSNG 151 (286)
T ss_pred CCCCHHHHHHHHHHHhC--CCCEEEEECCEecc-ccCHHHHHHHHHhc-CCCcEEEEEEc-----cCHHHCceEEECCCC
Confidence 3344467888888884 35677888999875 46788999887653 22223333343 24445554 367789
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEe-cCC-
Q 022555 198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKV-DHE- 272 (295)
Q Consensus 198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~-~~~- 272 (295)
++..+.|||. .......++|+|+|++++++....+.++ +++.+|.+. .++..|. +.+... ++.
T Consensus 152 ~V~~i~EKp~---------~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~--~~l~~g~-l~v~~~~~g~~ 219 (286)
T TIGR01207 152 RAISIEEKPA---------QPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNR--VYLEEGR-LSVELLGRGYA 219 (286)
T ss_pred eEEEEEECCC---------CCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHH--HHHHcCC-cEEEEecCCCE
Confidence 9999988852 1124578999999999988765544432 355555432 3445664 333333 454
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 022555 273 AHGVDAPEDVEKIESFMR 290 (295)
Q Consensus 273 ~idIdtpeDl~~ae~ll~ 290 (295)
|+||+||+||..|+.+++
T Consensus 220 W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 220 WLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EEeCCCHHHHHHHHHHHH
Confidence 999999999999998876
No 30
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=2.3e-23 Score=197.83 Aligned_cols=221 Identities=25% Similarity=0.317 Sum_probs=150.3
Q ss_pred CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc--CCeEEeCCCCC
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF--GADVIMTSESC 120 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~--~~~v~~~~~~~ 120 (295)
|++.+||||||.|+||+ ||+|+|++|+|||+|+++.+.+. +++|+|+++ .+.+.+++.++ +++++..++..
T Consensus 1 m~~~aiIlAaG~GtRl~~~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~~~i~~~~~~~~~~v~~~~~~~~~ 78 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKSSLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQKERIKEAVLEYFPGVIFHTQDLEN 78 (430)
T ss_pred CCccEEEEcCCCCccCCCCCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhcCCceEEEEecCcc
Confidence 56789999999999995 79999999999999999999875 677888776 45666666554 45555443322
Q ss_pred CCc-HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeE
Q 022555 121 RNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA 199 (295)
Q Consensus 121 ~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v 199 (295)
..+ ..++.. .....|.|++++||+||+++++++++++ ...+..++ +.++. +|..++++..++|++
T Consensus 79 ~~gt~~al~~----~~~~~d~vlv~~gD~p~~~~~~l~~l~~---~~~~~~v~--~~~~~-----~~~~~g~v~~d~g~v 144 (430)
T PRK14359 79 YPGTGGALMG----IEPKHERVLILNGDMPLVEKDELEKLLE---NDADIVMS--VFHLA-----DPKGYGRVVIENGQV 144 (430)
T ss_pred CCCcHHHHhh----cccCCCeEEEEECCccCCCHHHHHHHHh---CCCCEEEE--EEEcC-----CCccCcEEEEcCCeE
Confidence 223 333433 2223578999999999999988887664 23343333 23432 233344333347888
Q ss_pred EEeecCCCCCCCCCCCCCCC-CceEEEeEEEecHHHHhhccc-CCC----CCCcccchhhhhhhhhCCceEEEEEec-CC
Q 022555 200 IYFSRGLIPYNKSGKVNPQF-PYLLHLGIQSYDSNFLKIYPG-LHP----TPLQLEEDLEQLKVLENGYKMKVIKVD-HE 272 (295)
Q Consensus 200 ~~~~~~~i~~~r~~~~~~~~-p~~~~~Giyif~~~~l~~~~~-~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~ 272 (295)
..+.+++.. . .++. .+..++|+|+|++++|..+.. ... .++..+|.+ ..++..|.++..++.+ .+
T Consensus 145 ~~i~e~~~~-~-----~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i--~~l~~~g~~v~~~~~~~~~ 216 (430)
T PRK14359 145 KKIVEQKDA-N-----EEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDII--ALAIEKGETIKAVFVDEEN 216 (430)
T ss_pred EEEEECCCC-C-----cccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHH--HHHHHcCCeEEEEEcCCCE
Confidence 888766421 1 1222 357899999999999986532 221 123334433 2345678999999987 58
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q 022555 273 AHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 273 ~idIdtpeDl~~ae~ll~~r 292 (295)
|+|||+|+||..|+.++.++
T Consensus 217 w~dI~t~~dl~~a~~~l~~~ 236 (430)
T PRK14359 217 FMGVNSKFELAKAEEIMQER 236 (430)
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988765
No 31
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.92 E-value=2.2e-23 Score=181.39 Aligned_cols=216 Identities=22% Similarity=0.317 Sum_probs=151.5
Q ss_pred EEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcHHH
Q 022555 52 GIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTER 126 (295)
Q Consensus 52 aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~~~ 126 (295)
|||||||.|+||+ ||+|++++|+|||+|+++++.+.+ +++|+|+++. +.+.+++.++++.++.++. ..|...+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~gkpli~~~i~~l~~~~-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~-~~g~~~a 78 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVLDAARALG-PDRIVVVVGHGAEQVKKALANPNVEFVLQEE-QLGTGHA 78 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeCCccHHHHHHHHHHhCC-CCeEEEEECCCHHHHHHHhCCCCcEEEECCC-CCCCHHH
Confidence 6899999999995 799999999999999999999885 8898888863 5666666666777665543 3455678
Q ss_pred HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceE-EEECCCCeEEEeecC
Q 022555 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGYAIYFSRG 205 (295)
Q Consensus 127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~-v~~d~~g~v~~~~~~ 205 (295)
+++|+..+..+.+.+++++||+||++++++.++++.+.+.. ..+++...++. +|..+. +..+++|++..+.++
T Consensus 79 i~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~-~~~~~~~~~~~-----~p~~~~~~~~~~~~~v~~~~ek 152 (229)
T cd02540 79 VKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAG-ADVTVLTAELE-----DPTGYGRIIRDGNGKVLRIVEE 152 (229)
T ss_pred HHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcC-CcEEEEEEEcC-----CCCCccEEEEcCCCCEEEEEEC
Confidence 99999888522578999999999999999999999887632 22233333332 333343 345667888877765
Q ss_pred CCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC----CCCcccchhhhhhhhhCCceEEEEEec--CCcCCCCC
Q 022555 206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVIKVD--HEAHGVDA 278 (295)
Q Consensus 206 ~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~--~~~idIdt 278 (295)
+.. . .++......++|+|+|+++.|.. +..+.. .+...++.+ ..++..|.+|.+++.+ ..|+.|++
T Consensus 153 ~~~-~----~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~--~~~~~~g~~v~~~~~~~~~~~~~~~~ 225 (229)
T cd02540 153 KDA-T----EEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDII--ALAVADGLKVAAVLADDEEEVLGVND 225 (229)
T ss_pred CCC-C----hHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHH--HHHHHCCCEEEEEEcCCcceEecCCC
Confidence 321 0 01111257899999999887654 333221 122233333 2345578899999886 58999999
Q ss_pred HHHH
Q 022555 279 PEDV 282 (295)
Q Consensus 279 peDl 282 (295)
|+|+
T Consensus 226 ~~~~ 229 (229)
T cd02540 226 RVQL 229 (229)
T ss_pred hHhC
Confidence 9985
No 32
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.92 E-value=5.4e-23 Score=179.90 Aligned_cols=218 Identities=21% Similarity=0.288 Sum_probs=150.9
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---cCCeEEe-CCC
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIM-TSE 118 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~~~~v~~-~~~ 118 (295)
.+||||||.|+||+ ||+|++++|+|||+|+++++.+. ++++|+|+++. +.+.+++++ ++.++.. .+.
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQE 80 (236)
T ss_pred eEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEECC
Confidence 49999999999995 79999999999999999999987 59999999874 556565543 3455432 222
Q ss_pred CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEE-ECCCC
Q 022555 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHG 197 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~-~d~~g 197 (295)
...|...++..|+..+. .+.+++++||+.+ + ..+..+++.+.+.. ..+++.+.+.. +|..+.++ .| +|
T Consensus 81 ~~~g~~~sl~~a~~~i~--~~~~li~~~D~~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~g~~~~d-~~ 149 (236)
T cd04189 81 EPLGLAHAVLAARDFLG--DEPFVVYLGDNLI-Q-EGISPLVRDFLEED-ADASILLAEVE-----DPRRFGVAVVD-DG 149 (236)
T ss_pred CCCChHHHHHHHHHhcC--CCCEEEEECCeec-C-cCHHHHHHHHHhcC-CceEEEEEECC-----CcccceEEEEc-CC
Confidence 23344567888888874 3568999999965 4 46778888776532 22333334432 23334333 44 45
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEecCCcC
Q 022555 198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAH 274 (295)
Q Consensus 198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~i 274 (295)
++..+.+++.. ......++|+|+|+++++..+....++ ++..++.+ ..++..|.+|.+++.+++|+
T Consensus 150 ~v~~~~ek~~~---------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~--~~~i~~g~~v~~~~~~~~~~ 218 (236)
T cd04189 150 RIVRLVEKPKE---------PPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAI--QWLIDRGRRVGYSIVTGWWK 218 (236)
T ss_pred eEEEEEECCCC---------CCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHH--HHHHHcCCcEEEEEcCceEE
Confidence 88877776421 113568999999999988765433222 22233333 23456788899999888899
Q ss_pred CCCCHHHHHHHHHHHHH
Q 022555 275 GVDAPEDVEKIESFMRE 291 (295)
Q Consensus 275 dIdtpeDl~~ae~ll~~ 291 (295)
|||||+||..|+..+.+
T Consensus 219 ~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 219 DTGTPEDLLEANRLLLD 235 (236)
T ss_pred eCCCHHHHHHHHHHHHh
Confidence 99999999999988754
No 33
>PRK10122 GalU regulator GalF; Provisional
Probab=99.91 E-value=1.6e-22 Score=182.95 Aligned_cols=222 Identities=12% Similarity=0.108 Sum_probs=150.8
Q ss_pred ceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH------------
Q 022555 49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ------------ 108 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~------------ 108 (295)
.+.|||||||.|+||. ||+|+|++|+|+|+|+++++.++ ++++|+|+++. +.+.++...
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~ 81 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLLEQRV 81 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcc
Confidence 4569999999999995 79999999999999999999998 59999999974 455544421
Q ss_pred -------------cCCeEEeCCC-CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCH-------HHHHHHHHHHHhCC
Q 022555 109 -------------FGADVIMTSE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP-------EIIDGVVKALQAAP 167 (295)
Q Consensus 109 -------------~~~~v~~~~~-~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~-------~~i~~li~~~~~~~ 167 (295)
.++++.+..+ ...|...++..+...+. .+.++++.+|. ++++ .++.++++.+.+..
T Consensus 82 k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~--~~~fvvi~gD~-l~~~~~~~~~~~dl~~li~~h~~~~ 158 (297)
T PRK10122 82 KRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIG--DNPFVVVLPDV-VIDDASADPLRYNLAAMIARFNETG 158 (297)
T ss_pred hhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcC--CCCEEEEECCe-eccCccccccchhHHHHHHHHHHhC
Confidence 2344422222 22344467888988884 34578888998 6653 36899999887643
Q ss_pred CcEEEEeeeeCCCCCCCCCCceEEE-EC----CCC---eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc
Q 022555 168 DAVFSTAVTSLKPEDAFDPNRVKCV-VD----NHG---YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 239 (295)
Q Consensus 168 d~~v~v~~~~~~~~~~~~p~~~~v~-~d----~~g---~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~ 239 (295)
...+.+ .... .++..++++ .+ ++| +|..|.+||.. + .+.....+++|+|+|++++|..+.
T Consensus 159 ~~~~~~--~~~~----~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~-~-----~~~~s~~~~~GiYi~~~~i~~~l~ 226 (297)
T PRK10122 159 RSQVLA--KRMP----GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQ-P-----QTLDSDLMAVGRYVLSADIWPELE 226 (297)
T ss_pred CcEEEE--EECC----CCCCCceEEEecCcccCCCCeeeEEEEEECCCC-c-----ccCCccEEEEEEEEECHHHHHHHH
Confidence 333222 2221 123444443 43 355 56778887521 1 111236799999999999988765
Q ss_pred cCCCC---CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHH
Q 022555 240 GLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 289 (295)
Q Consensus 240 ~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll 289 (295)
+..++ +++.+|.+. .+..+.++.++..++.|+||++|+||..|..-+
T Consensus 227 ~~~~~~~~e~~ltd~i~---~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 227 RTEPGAWGRIQLTDAIA---ELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred hCCCCCCCeeeHHHHHH---HHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 54332 234455442 223445799999989999999999999998776
No 34
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=1.1e-22 Score=194.80 Aligned_cols=229 Identities=18% Similarity=0.228 Sum_probs=156.3
Q ss_pred CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCC
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRN 122 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g 122 (295)
|++.|||||||.|+||+ ||+|++++|+|||+|+++++.+. ++++++|+++. +++.+++.. ++.++..+ ...+
T Consensus 1 m~~~avIlAaG~g~Rl~~~~pK~ll~i~Gkpli~~~l~~l~~~-gi~~iivvv~~~~~~i~~~~~~-~~~~~~~~-~~~g 77 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKSKLPKVLHKVCGKPMVEHVVDSVKKA-GIDKIVTVVGHGAEEVKEVLGD-RSEFALQE-EQLG 77 (458)
T ss_pred CCceEEEEeCCCCcccCCCCChhhCEeCCccHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcC-CcEEEEcC-CCCC
Confidence 67789999999999995 89999999999999999999987 48998888763 445444432 34444432 3334
Q ss_pred cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceE-EEECCCCeEEE
Q 022555 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGYAIY 201 (295)
Q Consensus 123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~-v~~d~~g~v~~ 201 (295)
...+++.++..++...|.++++++|+||+++++++++++.+.+. ++..++...... +|..+. +..+++|++..
T Consensus 78 ~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~-~~~~t~~~~~~~-----~~~~~g~v~~d~~~~V~~ 151 (458)
T PRK14354 78 TGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEH-KAAATILTAIAE-----NPTGYGRIIRNENGEVEK 151 (458)
T ss_pred HHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhc-CCceEEEEEEcC-----CCCCceEEEEcCCCCEEE
Confidence 45678888888753246899999999999999999999988653 222233222321 232232 33577888888
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC----CCCcccchhhhhhhhhCCceEEEEEec--CCcC
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVIKVD--HEAH 274 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~--~~~i 274 (295)
+.+++.. +. .+......++|+|+|+++.|.. +..+.. .+++.+|.+ ..++..|.++..++.+ ..++
T Consensus 152 ~~ek~~~--~~---~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~--~~l~~~g~~v~~~~~~g~~~~i 224 (458)
T PRK14354 152 IVEQKDA--TE---EEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVI--EILKNEGEKVGAYQTEDFEESL 224 (458)
T ss_pred EEECCCC--Ch---HHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHH--HHHHHCCCeEEEEecCCcceEE
Confidence 8776421 00 0111357889999999986543 333221 122333332 1244578889999876 4689
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 022555 275 GVDAPEDVEKIESFMRER 292 (295)
Q Consensus 275 dIdtpeDl~~ae~ll~~r 292 (295)
||++++||+.|+.+++.+
T Consensus 225 ~i~~~~Dl~~a~~ll~~~ 242 (458)
T PRK14354 225 GVNDRVALAEAEKVMRRR 242 (458)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 35
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.91 E-value=1.7e-22 Score=176.73 Aligned_cols=216 Identities=18% Similarity=0.176 Sum_probs=148.3
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH----cCCeEEeCCC
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----FGADVIMTSE 118 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~----~~~~v~~~~~ 118 (295)
.+||||||.|+||+ ||+|+|++|+|||+|+++++.+. ++++|+|+++. +.+.+++.+ .++.+++..+
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~-g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE 80 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence 38999999999995 79999999999999999999987 59999999973 455555542 4566655322
Q ss_pred -CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EECC-
Q 022555 119 -SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDN- 195 (295)
Q Consensus 119 -~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d~- 195 (295)
...|...++..|...+....+.+++++||..+ ...+.++++.+++.. +..++.+.+.. ++..+++ ..++
T Consensus 81 ~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~g~v~~d~~ 152 (233)
T cd06425 81 TEPLGTAGPLALARDLLGDDDEPFFVLNSDVIC--DFPLAELLDFHKKHG-AEGTILVTKVE-----DPSKYGVVVHDEN 152 (233)
T ss_pred CCCCccHHHHHHHHHHhccCCCCEEEEeCCEee--CCCHHHHHHHHHHcC-CCEEEEEEEcC-----CccccCeEEEcCC
Confidence 23344567888888885323568999999843 345788998887542 22233334432 2222333 3566
Q ss_pred CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCC
Q 022555 196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG 275 (295)
Q Consensus 196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~id 275 (295)
+|++..+.++|.. .....+++|+|+|++++|..+... +...+ .|.+ ..+....+|.+++.+++|.|
T Consensus 153 ~~~v~~~~ekp~~---------~~~~~~~~Giyi~~~~~l~~l~~~-~~~~~-~~~~---~~l~~~~~v~~~~~~g~w~d 218 (233)
T cd06425 153 TGRIERFVEKPKV---------FVGNKINAGIYILNPSVLDRIPLR-PTSIE-KEIF---PKMASEGQLYAYELPGFWMD 218 (233)
T ss_pred CCEEEEEEECCCC---------CCCCEEEEEEEEECHHHHHhcccC-cccch-hhhH---HHHHhcCCEEEEeeCCEEEc
Confidence 6899988887521 113578999999999998765431 11111 1222 22223357999999899999
Q ss_pred CCCHHHHHHHHHHH
Q 022555 276 VDAPEDVEKIESFM 289 (295)
Q Consensus 276 IdtpeDl~~ae~ll 289 (295)
|+||+||..|+.++
T Consensus 219 igt~~~~~~a~~~~ 232 (233)
T cd06425 219 IGQPKDFLKGMSLY 232 (233)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998765
No 36
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.91 E-value=1.4e-22 Score=187.82 Aligned_cols=219 Identities=20% Similarity=0.257 Sum_probs=154.3
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHHH---cCCeEEe-CCC
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQ---FGADVIM-TSE 118 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~~---~~~~v~~-~~~ 118 (295)
|||||||.|+||. ||+|+|++|+|||+|+++++.+. ++++|+|+++. +.+.+++.. +++++.+ .+.
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQG 80 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHC-CCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECC
Confidence 8999999999995 79999999999999999999988 59999999875 455555542 3444422 222
Q ss_pred CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EECCCC
Q 022555 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDNHG 197 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d~~g 197 (295)
...|...+++.++..+. .+.++++.||+++ ..++.++++.+.+. ++.+++.+.++. +|..+.+ ..++++
T Consensus 81 ~~~G~~~al~~a~~~l~--~~~~li~~gD~~~--~~~l~~l~~~~~~~-~~d~ti~~~~~~-----~~~~~g~~~~~~~~ 150 (353)
T TIGR01208 81 EPLGLAHAVYTARDFLG--DDDFVVYLGDNLI--QDGISRFVKSFEEK-DYDALILLTKVR-----DPTAFGVAVLEDGK 150 (353)
T ss_pred CCCCHHHHHHHHHHhcC--CCCEEEEECCeec--CccHHHHHHHHHhc-CCCcEEEEEECC-----ChhhCeEEEEcCCC
Confidence 33455567888888884 3568999999976 36789999988653 222333333432 2333333 345566
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEecCCcC
Q 022555 198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAH 274 (295)
Q Consensus 198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~i 274 (295)
++..|.+++.. ......++|+|+|++.+++.+....++ ++..++.+ ..++..|.+|.+++.+++|.
T Consensus 151 ~v~~~~ekp~~---------~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l--~~l~~~g~~v~~~~~~g~w~ 219 (353)
T TIGR01208 151 RILKLVEKPKE---------PPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAI--QWLIEKGYKVGGSKVTGWWK 219 (353)
T ss_pred cEEEEEECCCC---------CCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHH--HHHHHcCCeEEEEEeCcEEE
Confidence 78888776421 113578999999999877665443321 23333333 23445788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 022555 275 GVDAPEDVEKIESFMRER 292 (295)
Q Consensus 275 dIdtpeDl~~ae~ll~~r 292 (295)
|||||+||..|+..+..+
T Consensus 220 digt~~dl~~a~~~ll~~ 237 (353)
T TIGR01208 220 DTGKPEDLLDANRLILDE 237 (353)
T ss_pred eCCCHHHHHHHHHHHHhh
Confidence 999999999999988764
No 37
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=2e-22 Score=193.91 Aligned_cols=230 Identities=17% Similarity=0.200 Sum_probs=159.9
Q ss_pred CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCC
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRN 122 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g 122 (295)
|++.+||||||+|+||+ ||+|++++|+|||+|+++++.+. ++++|+|++++ +.+.+++...++.++.. +...|
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~~~i~~v~~-~~~~G 83 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKVLHPVAGRPMVAWAVKAARDL-GARKIVVVTGHGAEQVEAALQGSGVAFARQ-EQQLG 83 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCceecEECCeeHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhccCCcEEecC-CCcCC
Confidence 56789999999999995 89999999999999999999987 59999999985 55666655456665543 23335
Q ss_pred cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EECCCCeEEE
Q 022555 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDNHGYAIY 201 (295)
Q Consensus 123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d~~g~v~~ 201 (295)
...+++.++..+....+.+++++||+||+++.+++++++.+.++ ++.+++...++. ++..+++ ..|++|++..
T Consensus 84 t~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~-~~~~ti~~~~~~-----~~~~yG~v~~d~~g~v~~ 157 (481)
T PRK14358 84 TGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQ-GSAMTILTGELP-----DATGYGRIVRGADGAVER 157 (481)
T ss_pred cHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhc-CCeEEEEEEEcC-----CCCCceEEEECCCCCEEE
Confidence 55678888887742234589999999999999999999988765 344444434442 2233444 4677889999
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHH---HhhcccC-CCCCCcccchhhhhhhhhCCceEEEEEecC--CcCC
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNF---LKIYPGL-HPTPLQLEEDLEQLKVLENGYKMKVIKVDH--EAHG 275 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~---l~~~~~~-~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~--~~id 275 (295)
|.|++.+ +. .+.....+++|+|+|++++ +..+... ...+++++|.+. .++..|.++..++.++ .++.
T Consensus 158 ~~Ek~~~-~~----~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~--~~~~~g~~i~~~~~~~~~~~i~ 230 (481)
T PRK14358 158 IVEQKDA-TD----AEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLG--LYRAGGAQVRAFKLSDPDEVLG 230 (481)
T ss_pred EEECCCC-Ch----hHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHH--HHHHCCCeEEEEecCCHHHhcC
Confidence 9887521 10 0111246899999999654 3333221 112344555432 3456788899988763 6788
Q ss_pred CCCHHHHHHHHHHHHHh
Q 022555 276 VDAPEDVEKIESFMRER 292 (295)
Q Consensus 276 IdtpeDl~~ae~ll~~r 292 (295)
++++.++..++.++.++
T Consensus 231 ~~~~~~l~~~~~~l~~~ 247 (481)
T PRK14358 231 ANDRAGLAQLEATLRRR 247 (481)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88888887777666554
No 38
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=1.8e-22 Score=194.44 Aligned_cols=219 Identities=21% Similarity=0.244 Sum_probs=153.0
Q ss_pred ceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcC--CeEEeCCCCCC
Q 022555 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFG--ADVIMTSESCR 121 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~--~~v~~~~~~~~ 121 (295)
.+.+||||||.|+||+ ||+|++++|+|||+|+++++.+. ++++++|+++. +.+.+.+.... +.++ .++...
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~~~~~~~~-~~~~~~ 81 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTLAGRSMLGHVLHAAAGL-APQHLVVVVGHDRERVAPAVAELAPEVDIA-VQDEQP 81 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceeceeCCccHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHHhhccCCccEEE-eCCCCC
Confidence 4679999999999995 79999999999999999999987 48888888863 45555544332 3233 223333
Q ss_pred CcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeE
Q 022555 122 NGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYA 199 (295)
Q Consensus 122 g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v 199 (295)
|...+++.++..+.. ..+.+++++||+||+++.+++++++.+.+.. ..+++...++ .+|..+ .+..+++|++
T Consensus 82 Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~-~~~~v~~~~~-----~~p~~yg~~~~~~~g~V 155 (482)
T PRK14352 82 GTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEG-NAVTVLTTTL-----DDPTGYGRILRDQDGEV 155 (482)
T ss_pred CcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcC-CeEEEEEeec-----CCCCCCCEEEECCCCCE
Confidence 445678899988742 2467999999999999999999999887643 3344433333 233333 2345778899
Q ss_pred EEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCC----CCCcccchhhhhhhhhCCceEEEEEecCCcC
Q 022555 200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP----TPLQLEEDLEQLKVLENGYKMKVIKVDHEAH 274 (295)
Q Consensus 200 ~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~i 274 (295)
..|.+++.+ .. .+.....+++|+|+|++++|..+ ..+.+ .+++.+|.+ ..++..|.+|.+++.+++|.
T Consensus 156 ~~~~EKp~~-~~----~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i--~~l~~~g~~V~~~~~~g~w~ 228 (482)
T PRK14352 156 TAIVEQKDA-TP----SQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVL--AIAREAGHRVGAHHADDSAE 228 (482)
T ss_pred EEEEECCCC-CH----HHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHH--HHHHHCCCeEEEEecCCcce
Confidence 888887532 11 11112468999999999998653 33322 223444443 23456788999999989999
Q ss_pred CCCCHHHH
Q 022555 275 GVDAPEDV 282 (295)
Q Consensus 275 dIdtpeDl 282 (295)
|+++++++
T Consensus 229 ~~g~~~~~ 236 (482)
T PRK14352 229 VAGVNDRV 236 (482)
T ss_pred EEcCCCHH
Confidence 99999887
No 39
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.91 E-value=1.5e-22 Score=193.30 Aligned_cols=224 Identities=19% Similarity=0.290 Sum_probs=157.7
Q ss_pred EEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555 51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTE 125 (295)
Q Consensus 51 ~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~~ 125 (295)
.+||||||.|+||+ ||+|++++|+|||+|+++++.+++ +++++|+++. +.+.+.+.++++.++..++. .|...
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~iiiv~~~~~~~i~~~~~~~~i~~~~~~~~-~G~~~ 79 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVIDAARALG-PQKIHVVYGHGAEQVRKALANRDVNWVLQAEQ-LGTGH 79 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhceeCCccHHHHHHHHHHhCC-CCeEEEEECCCHHHHHHHhcCCCcEEEEcCCC-CchHH
Confidence 39999999999995 799999999999999999999884 8888888863 55666666666766554332 34456
Q ss_pred HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEEEeec
Q 022555 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSR 204 (295)
Q Consensus 126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~~~~~ 204 (295)
++++++..+. +.+.+++++||+||+++++++++++.+.+. +. ++...++. +|..+ .+..+++|.+..|.+
T Consensus 80 ai~~a~~~l~-~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~-~~--~~~~~~~~-----~~~~~g~v~~d~~g~v~~~~e 150 (451)
T TIGR01173 80 AVLQALPFLP-DDGDVLVLYGDVPLISAETLERLLEAHRQN-GI--TLLTAKLP-----DPTGYGRIIRENDGKVTAIVE 150 (451)
T ss_pred HHHHHHHhcC-CCCcEEEEECCcCCcCHHHHHHHHHHHhhC-CE--EEEEEecC-----CCCCCCEEEEcCCCCEEEEEE
Confidence 7889998885 236799999999999999999999988654 32 22223332 22222 234677888888877
Q ss_pred CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCC----CCcccchhhhhhhhhCCceEEEEEecCC--cCCCC
Q 022555 205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPT----PLQLEEDLEQLKVLENGYKMKVIKVDHE--AHGVD 277 (295)
Q Consensus 205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~~~--~idId 277 (295)
++.. . ..++..+..++|+|+|++++|.. +...... ++..++.+ ..++..|.++..++.+++ |+|++
T Consensus 151 k~~~-~----~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~--~~l~~~g~~v~~~~~~~~~~~~~i~ 223 (451)
T TIGR01173 151 DKDA-N----AEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVI--ALAVADGETVRAVQVDDSDEVLGVN 223 (451)
T ss_pred cCCC-C----hHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHH--HHHHHCCCeEEEEEcCChhheecCC
Confidence 6421 1 01222357889999999998654 3332221 22223322 234567889999987654 99999
Q ss_pred CHHHHHHHHHHHHHh
Q 022555 278 APEDVEKIESFMRER 292 (295)
Q Consensus 278 tpeDl~~ae~ll~~r 292 (295)
+|+|+..++.++..+
T Consensus 224 t~~dl~~~~~~l~~~ 238 (451)
T TIGR01173 224 DRLQLAQLERILQRR 238 (451)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998877653
No 40
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.91 E-value=6.5e-23 Score=180.52 Aligned_cols=222 Identities=22% Similarity=0.282 Sum_probs=152.5
Q ss_pred EEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeE-EEECC--chHHHHHHHH---cCCeE--Ee
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHL-VVATD--DEKIAECCQQ---FGADV--IM 115 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~I-vVv~~--~~~i~~~~~~---~~~~v--~~ 115 (295)
.|||||||.|+||. ||+|+++.|+ |||+|+++.+.+. +++++ +|++. .+.+.++++. +++++ +.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~-g~~~ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~ 79 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANA-GIKEIIVVVNGYKEEQIEEHLGSGYKFGVKIEYIV 79 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHT-TCSEEEEEEETTTHHHHHHHHTTSGGGTEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhccc-CCceEEEEEeecccccccccccccccccccceeee
Confidence 38999999999995 7999999999 9999999999987 59995 44443 3556666653 34333 44
Q ss_pred CCCCCCCcHHHHHHHHHHcccc--CCEEEEEeCCcccCCHHHHHHHHHHHHhCCC-cEEEEeeeeCCCCCCCCCCceE-E
Q 022555 116 TSESCRNGTERCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGVVKALQAAPD-AVFSTAVTSLKPEDAFDPNRVK-C 191 (295)
Q Consensus 116 ~~~~~~g~~~~i~~al~~~~~~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d-~~v~v~~~~~~~~~~~~p~~~~-v 191 (295)
.+. ..|...++..+...+..+ .+.|++++||..+ +. .+..+++.+.+... ..+++...+.. ++..++ +
T Consensus 80 ~~~-~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~g~v 151 (248)
T PF00483_consen 80 QPE-PLGTAGALLQALDFIEEEDDDEDFLVLNGDIIF-DD-DLQDMLEFHRESNADGTVTLLVVPVE-----DPSRYGVV 151 (248)
T ss_dssp ESS-SSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEE-ST-THHHHHHHHHHHSSCESEEEEEEESS-----GGGGSEEE
T ss_pred ccc-ccchhHHHHHHHHHhhhccccceEEEEeccccc-cc-hhhhHHHhhhcccccccccccccccc-----ccccceee
Confidence 432 225456788888887532 2359999999944 43 89999999976432 33344333332 233343 4
Q ss_pred EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc----cCCCCCCcccchhhhhhhhhCCceEEEE
Q 022555 192 VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP----GLHPTPLQLEEDLEQLKVLENGYKMKVI 267 (295)
Q Consensus 192 ~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~----~~~~~~~~~~d~~~~~~~~~~G~~v~~v 267 (295)
..|++|+|..|.|||.. .....++++|+|+|++++|..+. .....+...+|.+ ..++..|..+..+
T Consensus 152 ~~d~~~~V~~~~EKP~~--------~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i--~~~~~~~~~~~~~ 221 (248)
T PF00483_consen 152 EVDEDGRVIRIVEKPDN--------PNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAI--PKLLEQGKKVYAF 221 (248)
T ss_dssp EEETTSEEEEEEESCSS--------HSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHH--HHHHHTTCEEEEE
T ss_pred eeccceeEEEEeccCcc--------cccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHH--HHHHHcCCceEEE
Confidence 56778999999998531 11146899999999999988662 2222223334433 2345678888888
Q ss_pred EecC--CcCCCCCHHHHHHHHHHHHH
Q 022555 268 KVDH--EAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 268 ~~~~--~~idIdtpeDl~~ae~ll~~ 291 (295)
..+. +|+||++|+||..|+..+.+
T Consensus 222 ~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 222 IFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred EecCCeEEEECCCHHHHHHHHHHHhc
Confidence 8776 79999999999999988754
No 41
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=99.91 E-value=2.8e-23 Score=179.58 Aligned_cols=182 Identities=35% Similarity=0.606 Sum_probs=133.7
Q ss_pred EEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHH
Q 022555 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA 130 (295)
Q Consensus 51 ~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~a 130 (295)
.|||+|+|+|+|+|+|++++++|+|||+|+++++++++.+++|+|.|+++++.++++++++.++.++++...++++...+
T Consensus 1 iaiIpAR~gS~rlp~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g~~v~~~~~~~~~~~~r~~~~ 80 (217)
T PF02348_consen 1 IAIIPARGGSKRLPGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYGAKVIFRRGSLADDTDRFIEA 80 (217)
T ss_dssp EEEEEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTTSEEEE--TTSSSHHHHHHHH
T ss_pred CEEEecCCCCCCCCcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcCCeeEEcChhhcCCcccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999988887888888888778
Q ss_pred HHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEeecCCC
Q 022555 131 LQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLI 207 (295)
Q Consensus 131 l~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~-d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~~~~i 207 (295)
+..... +.+.++.+.+|.||+++..++++++.+.+.. +..... ...+. ..+..+++.++...+.++...++.+..+
T Consensus 81 ~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (217)
T PF02348_consen 81 IKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNL-VDPVGSSVEIFNFNPLKVLFDDDGLELYFSEHVI 159 (217)
T ss_dssp HHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEE-EEEECSHHHHTSTTSTEEEECTTSBEEEEESSES
T ss_pred HHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccc-cccccchhhcccccceEEEeccccchhhcccCCC
Confidence 777642 2348999999999999999999999998753 322222 22221 1223455667767777777777877766
Q ss_pred CCCCCCCCCCCCCceEEEeEEEecHH
Q 022555 208 PYNKSGKVNPQFPYLLHLGIQSYDSN 233 (295)
Q Consensus 208 ~~~r~~~~~~~~p~~~~~Giyif~~~ 233 (295)
++.++........+..+.|+|.|...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 160 PYIRRNPEEFKYFYIRQVGIYAFRKE 185 (217)
T ss_dssp SECHHHHCSSSSTEEEEEEEEEEEHH
T ss_pred cccccccccccccccccccccccccc
Confidence 65443211100124556777777775
No 42
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.90 E-value=2.6e-22 Score=178.32 Aligned_cols=217 Identities=15% Similarity=0.159 Sum_probs=146.1
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHc-------------
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF------------- 109 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~------------- 109 (295)
.+||||||.|+||. ||+++|++|+|||+|+++++.++ ++++|+|+++. +.+.++....
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE 80 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhC-CCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence 38999999999994 79999999999999999999987 59999999974 4444443210
Q ss_pred -----------CCeEEe-CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCH-HHHHHHHHHHHhCCCcEEEEeee
Q 022555 110 -----------GADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP-EIIDGVVKALQAAPDAVFSTAVT 176 (295)
Q Consensus 110 -----------~~~v~~-~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~-~~i~~li~~~~~~~d~~v~v~~~ 176 (295)
+..+.+ ......|...++..++..+. .+.++++.+|+++... .+++.+++.+.+....++++ .
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~--~ 156 (260)
T TIGR01099 81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVG--DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAV--E 156 (260)
T ss_pred HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhC--CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEE--E
Confidence 122322 22223344567888888873 4679999999998765 48999999887643333333 2
Q ss_pred eCCCCCCCCCCceEE-EEC----CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcc
Q 022555 177 SLKPEDAFDPNRVKC-VVD----NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQL 248 (295)
Q Consensus 177 ~~~~~~~~~p~~~~v-~~d----~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~ 248 (295)
.+..+ ++..+++ ..| ++|+|..|.|+|.+ . +.....+++|+|+|++++|..+.....+ +++.
T Consensus 157 ~~~~~---~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~--~-----~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l 226 (260)
T TIGR01099 157 EVPKE---EVSKYGVIDGEGVEEGLYEIKDMVEKPKP--E-----EAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQL 226 (260)
T ss_pred ECChh---hcccCceEEeccccCCceeEEEEEECCCC--C-----CCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeH
Confidence 22211 2233433 344 23689899888532 1 1123578999999999988876443221 2333
Q ss_pred cchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHH
Q 022555 249 EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 285 (295)
Q Consensus 249 ~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~a 285 (295)
+|.+. .++.. .+|.+++.+++|.||++|+||..|
T Consensus 227 ~d~i~--~l~~~-~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 227 TDALR--KLLEK-ETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHH--HHHhc-CCEEEEEcceEEEeCCCHHHHhhC
Confidence 43331 22334 479999988999999999999754
No 43
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.90 E-value=3.2e-22 Score=173.47 Aligned_cols=206 Identities=19% Similarity=0.231 Sum_probs=143.8
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH--cCCeEEeCCC--C
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ--FGADVIMTSE--S 119 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~--~~~~v~~~~~--~ 119 (295)
|||||||.|+||. ||+++|++|+|||+|+++++.++ ++++|+|+++. +.+.+++.. +++.+.+..+ .
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~i~~~~~~~~ 80 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPDE 80 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHC-CCCEEEEEccCCHHHHHHHHhcccCCceEEEecCCCc
Confidence 8999999999995 69999999999999999999988 59999999974 556665543 4666644332 2
Q ss_pred CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCce-EEEECCCC
Q 022555 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHG 197 (295)
Q Consensus 120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g 197 (295)
..|...++..++..+. .+.+++++||+++ ...+..+++.+.+ ..++.+++...+.. ++..+ .+..+++|
T Consensus 81 ~~g~~~~l~~~~~~~~--~~~~lv~~~D~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~g~v~~d~~~ 151 (221)
T cd06422 81 LLETGGGIKKALPLLG--DEPFLVVNGDILW--DGDLAPLLLLHAWRMDALLLLLPLVRNP-----GHNGVGDFSLDADG 151 (221)
T ss_pred ccccHHHHHHHHHhcC--CCCEEEEeCCeee--CCCHHHHHHHHHhccCCCceEEEEEEcC-----CCCCcceEEECCCC
Confidence 3345567888998884 3679999999965 3467788888763 23444444333321 11222 34467788
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCC
Q 022555 198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVD 277 (295)
Q Consensus 198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idId 277 (295)
.+..+.+++. ...+++|+|+|++++|..+.+. ....++.+. .++..| ++..++.+++|.||+
T Consensus 152 ~v~~~~~~~~------------~~~~~~Giyi~~~~~l~~l~~~---~~~~~d~~~--~l~~~~-~~~~~~~~g~w~di~ 213 (221)
T cd06422 152 RLRRGGGGAV------------APFTFTGIQILSPELFAGIPPG---KFSLNPLWD--RAIAAG-RLFGLVYDGLWFDVG 213 (221)
T ss_pred cEeecccCCC------------CceEEEEEEEEcHHHHhhCCcC---cccHHHHHH--HHHHcC-CeEEEecCCEEEcCC
Confidence 8876655431 2578999999999998865431 223333331 233444 577777778999999
Q ss_pred CHHHHHHH
Q 022555 278 APEDVEKI 285 (295)
Q Consensus 278 tpeDl~~a 285 (295)
+|+||..|
T Consensus 214 t~~~~~~a 221 (221)
T cd06422 214 TPERLLAA 221 (221)
T ss_pred CHHHHhhC
Confidence 99999864
No 44
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.90 E-value=1.3e-21 Score=174.62 Aligned_cols=222 Identities=16% Similarity=0.168 Sum_probs=149.4
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH----------c---
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----------F--- 109 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~----------~--- 109 (295)
.+||||||.|+||. ||+++|++|+|||+|+++++.+. ++++|+|+++. +.+.++... .
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT 80 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence 48999999999995 79999999999999999999987 59999999984 344443321 1
Q ss_pred -----------CCeEEe-CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHH-HHHHHHHHHHhCCCcEEEEeee
Q 022555 110 -----------GADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE-IIDGVVKALQAAPDAVFSTAVT 176 (295)
Q Consensus 110 -----------~~~v~~-~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~-~i~~li~~~~~~~d~~v~v~~~ 176 (295)
+..+.+ .++...|...++..++..+. .+.++++.+|+++...+ +++++++.+.+....++.+ .
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~--~ 156 (267)
T cd02541 81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAV--E 156 (267)
T ss_pred HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC--CCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEE--E
Confidence 333322 22223445567888888884 36799999999886654 7999999887543333333 2
Q ss_pred eCCCCCCCCCCceEE-EECC----CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC---CCCcc
Q 022555 177 SLKPEDAFDPNRVKC-VVDN----HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---TPLQL 248 (295)
Q Consensus 177 ~~~~~~~~~p~~~~v-~~d~----~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~---~~~~~ 248 (295)
++..+ ++..+.+ ..|+ ++++..+.|+|.+ .......+++|+|+|++++|..+..... .+...
T Consensus 157 ~~~~~---~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~-------~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~ 226 (267)
T cd02541 157 EVPPE---DVSKYGIVKGEKIDGDVFKVKGLVEKPKP-------EEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQL 226 (267)
T ss_pred EcChh---cCccceEEEeecCCCCceEEeEEEECCCC-------CCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEH
Confidence 32211 1222333 3454 2478888887531 0112357889999999999876543211 12222
Q ss_pred cchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHH
Q 022555 249 EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 290 (295)
Q Consensus 249 ~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~ 290 (295)
++.+ ..++..| +|.+++.+++|.||+||+||..|+.-+.
T Consensus 227 ~d~i--~~l~~~~-~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 227 TDAI--AKLLEEE-PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHH--HHHHhcC-CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 3322 2334455 8999998889999999999999987653
No 45
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.89 E-value=5.6e-22 Score=165.41 Aligned_cols=190 Identities=23% Similarity=0.334 Sum_probs=138.7
Q ss_pred CCceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHH---HHHHHcCCeEEeCCCCCCC
Q 022555 47 RSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQQFGADVIMTSESCRN 122 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~---~~~~~~~~~v~~~~~~~~g 122 (295)
++++.+||||||+|+||+ +|+|++++|+|++.|+++++.+. .+++++||++++..+ ......++.++.+++..+|
T Consensus 3 ~~~v~~VvLAAGrssRmG~~KlLap~~g~plv~~~~~~a~~a-~~~~vivV~g~~~~~~~~a~~~~~~~~~v~npd~~~G 81 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMGQPKLLAPLDGKPLVRASAETALSA-GLDRVIVVTGHRVAEAVEALLAQLGVTVVVNPDYAQG 81 (199)
T ss_pred CcceEEEEEcccccccCCCcceecccCCCcHHHHHHHHHHhc-CCCeEEEEeCcchhhHHHhhhccCCeEEEeCcchhhh
Confidence 456899999999999997 89999999999999999999887 599999999975222 2233457888899888888
Q ss_pred cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202 (295)
Q Consensus 123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~ 202 (295)
..+|+..|+.....+.+.++++.+|||++++++++++++.+.++ . .+. .+. + .+..|+
T Consensus 82 ls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~-~-~~v---~p~----------~---~g~rG~---- 139 (199)
T COG2068 82 LSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR-G-AAV---RPV----------Y---GGARGH---- 139 (199)
T ss_pred HhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc-C-cee---eee----------c---cCCcCC----
Confidence 88999999999864446999999999999999999999999875 2 211 111 1 111233
Q ss_pred ecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhh-CCceEEEEEe-cCCcCCCCCHH
Q 022555 203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKV-DHEAHGVDAPE 280 (295)
Q Consensus 203 ~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~-~G~~v~~v~~-~~~~idIdtpe 280 (295)
| -+|++..|.....+.-. .....++. .|.....++. ...-+|||||+
T Consensus 140 -----------------P-------v~~~~~~~~~l~~l~GD-------~G~r~ll~~~~~~~~~V~~~~g~llDVDTpe 188 (199)
T COG2068 140 -----------------P-------VLLSKDLFPALARLSGD-------VGARQLLEEGGLPLVEVEVDAGVLLDVDTPE 188 (199)
T ss_pred -----------------c-------eeechhHHHHHhhcCCc-------hhHHHHHHhcCcceEeeccCCceEecCCCHH
Confidence 2 34455555444333211 01122333 4556666665 46789999999
Q ss_pred HHHHHHHHHH
Q 022555 281 DVEKIESFMR 290 (295)
Q Consensus 281 Dl~~ae~ll~ 290 (295)
||.+++.++.
T Consensus 189 d~~~a~~~~~ 198 (199)
T COG2068 189 DLARAQDLLR 198 (199)
T ss_pred HHHHHHHhhc
Confidence 9999998874
No 46
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.89 E-value=1.3e-21 Score=183.15 Aligned_cols=226 Identities=16% Similarity=0.151 Sum_probs=151.6
Q ss_pred CceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---cC-----
Q 022555 48 SRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FG----- 110 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~~----- 110 (295)
.++.|||||||.||||. ||+|+|++|+ |||+|+++++.++ ++++|+|+++. +.+.+++.. ++
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 80 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANS-GIDTVGVLTQYQPLELNNHIGIGSPWDLDRIN 80 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhCCCcccccCCC
Confidence 34679999999999995 7999999999 8999999999987 59999999984 556666532 11
Q ss_pred --CeEE--eCCCC----CCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCC
Q 022555 111 --ADVI--MTSES----CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE 181 (295)
Q Consensus 111 --~~v~--~~~~~----~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~ 181 (295)
+.++ +..+. ..|...+++.|+..+.. +.+.++++++|. + ...++.++++.+.+.. +.+++.+.++..
T Consensus 81 ~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~-l-~~~d~~~ll~~h~~~~-~~~tl~~~~~~~- 156 (380)
T PRK05293 81 GGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDH-I-YKMDYDKMLDYHKEKE-ADVTIAVIEVPW- 156 (380)
T ss_pred CCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCE-E-EcCCHHHHHHHHHhcC-CCEEEEEEEcch-
Confidence 2222 11111 13444678888888742 136899999998 3 3567889998886532 223332223221
Q ss_pred CCCCCCceEE-EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCCCCCcc----cchhhhh
Q 022555 182 DAFDPNRVKC-VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHPTPLQL----EEDLEQL 255 (295)
Q Consensus 182 ~~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~~~~~~----~d~~~~~ 255 (295)
.+|..+++ ..|++|++..|.++|.. ......++|+|+|++++|..+. .......+. +|.+ .
T Consensus 157 --~~~~~yG~v~~d~~g~V~~~~eKp~~---------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i--~ 223 (380)
T PRK05293 157 --EEASRFGIMNTDENMRIVEFEEKPKN---------PKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVI--P 223 (380)
T ss_pred --hhccccCEEEECCCCcEEEEEeCCCC---------CCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHH--H
Confidence 12334433 35778899888887521 1135789999999999886532 211111111 1222 1
Q ss_pred hhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHH
Q 022555 256 KVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 256 ~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~ 291 (295)
.++..|.++..++.+++|.||++|+||..|+..+..
T Consensus 224 ~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~ 259 (380)
T PRK05293 224 LYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLR 259 (380)
T ss_pred HHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcC
Confidence 234567889999988899999999999999965543
No 47
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.89 E-value=2e-21 Score=172.54 Aligned_cols=220 Identities=15% Similarity=0.161 Sum_probs=147.9
Q ss_pred EEEEcCC--CCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH----cCCeEEeCC
Q 022555 52 GIIPARF--ASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----FGADVIMTS 117 (295)
Q Consensus 52 aiIlAaG--~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~----~~~~v~~~~ 117 (295)
+|||||| +|+||. ||+|+|++|+|||+|+++.+.+..++++|+|+++. +.+.+++.. .++.+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 5899999 899995 79999999999999999999984359999999973 455555532 344553322
Q ss_pred CC-CCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EEC
Q 022555 118 ES-CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVD 194 (295)
Q Consensus 118 ~~-~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d 194 (295)
+. ..|...++..+...+.. ..+.|++++||.++ ..+++.+++.++++. +.+++...++..+ ++..+.+ ..|
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~--~~dl~~~~~~h~~~~-~~~tl~~~~~~~~---~~~~yg~v~~d 154 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCC--DFPLQELLEFHKKHG-ASGTILGTEASRE---QASNYGCIVED 154 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeec--CCCHHHHHHHHHHcC-CCEEEEEEEcccc---ccccccEEEEe
Confidence 22 33444567777777642 24679999999964 347999999887642 3333333333211 2233333 356
Q ss_pred -CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---C---------------Ccc-cchhhh
Q 022555 195 -NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---P---------------LQL-EEDLEQ 254 (295)
Q Consensus 195 -~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~---------------~~~-~d~~~~ 254 (295)
++|++..|.++|. +.....+++|+|+|++++|..+....++ + +.+ +|.+
T Consensus 155 ~~~g~v~~~~Ekp~---------~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~-- 223 (257)
T cd06428 155 PSTGEVLHYVEKPE---------TFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVL-- 223 (257)
T ss_pred CCCCeEEEEEeCCC---------CcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhh--
Confidence 5789998888752 1124579999999999998765443221 0 111 1222
Q ss_pred hhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHH
Q 022555 255 LKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 289 (295)
Q Consensus 255 ~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll 289 (295)
..++..+ +|.+++.+++|.||++|+||..|++.+
T Consensus 224 ~~l~~~~-~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 224 TPLAGSG-KLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred hHHhccC-CEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 1223344 799999889999999999999998753
No 48
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.89 E-value=2.4e-21 Score=185.08 Aligned_cols=224 Identities=16% Similarity=0.253 Sum_probs=151.9
Q ss_pred eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHc-CCeEEeCCCCCCCc
Q 022555 50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESCRNG 123 (295)
Q Consensus 50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~-~~~v~~~~~~~~g~ 123 (295)
+.+||||||+|+||+ ||+|++++|+|||+|+++++.+.+ +++++|++.. +.+.+++.+. ++.++.. ....|.
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~g-~~~iivvv~~~~~~i~~~~~~~~~i~~v~~-~~~~G~ 79 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPLGGKSLVERVLDSCEELK-PDRRLVIVGHQAEEVEQSLAHLPGLEFVEQ-QPQLGT 79 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEECChhHHHHHHHHHHhCC-CCeEEEEECCCHHHHHHHhcccCCeEEEEe-CCcCCc
Confidence 568999999999996 899999999999999999999874 7888887763 4555555443 3555543 233344
Q ss_pred HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEEEe
Q 022555 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYF 202 (295)
Q Consensus 124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~~~ 202 (295)
..++..++..+....+.++++++|+||+++++++++++.+.+.. ..+++...++. +|..+ .+..|++|++..+
T Consensus 80 ~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~-~~~~~~~~~~~-----~~~~~g~~~~d~~g~v~~~ 153 (450)
T PRK14360 80 GHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSN-ADVTLLTARLP-----NPKGYGRVFCDGNNLVEQI 153 (450)
T ss_pred HHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcC-CcEEEEEEecC-----CCCCccEEEECCCCCEEEE
Confidence 56788888877532457899999999999999999999887643 33343333332 23333 3346788999988
Q ss_pred ecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCCC----CCcccchhhhhhhhhCCceEEEEEec--CCcCC
Q 022555 203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHPT----PLQLEEDLEQLKVLENGYKMKVIKVD--HEAHG 275 (295)
Q Consensus 203 ~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~--~~~id 275 (295)
.+++-+++ .+......++|+|+|+++.|..+. ...+. +...+|.+ ..+. ++..++.. ..+++
T Consensus 154 ~ek~~~~~-----~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i---~~~~---~~~~~~v~~~~~~~~ 222 (450)
T PRK14360 154 VEDRDCTP-----AQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTV---SLLD---PVMAVEVEDYQEING 222 (450)
T ss_pred EECCCCCh-----hHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHH---HHHh---hceEEecCCHHHhhc
Confidence 88753211 111235789999999998876543 33222 23333332 2221 12333333 46799
Q ss_pred CCCHHHHHHHHHHHHHh
Q 022555 276 VDAPEDVEKIESFMRER 292 (295)
Q Consensus 276 IdtpeDl~~ae~ll~~r 292 (295)
|++|+|++.+++++..+
T Consensus 223 i~~~~dl~~~~~~l~~~ 239 (450)
T PRK14360 223 INDRKQLAQCEEILQNR 239 (450)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998653
No 49
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.89 E-value=3.9e-21 Score=170.43 Aligned_cols=212 Identities=15% Similarity=0.161 Sum_probs=145.0
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc-----CCeEEeC--
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-----GADVIMT-- 116 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~-----~~~v~~~-- 116 (295)
+||||||.|+||. ||+|+|++|+|||.|+++.+.+. ++++|+|+++ .+.+.+++.+. ++.+...
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 7999999999994 79999999999999999999987 5999999997 35555555431 2222111
Q ss_pred -----------------CCCCCCc-HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeC
Q 022555 117 -----------------SESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL 178 (295)
Q Consensus 117 -----------------~~~~~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~ 178 (295)
.+....+ ..+++.+...+. .+.|+++++|.. ...++.++++.+.+. ++.+++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~--~e~flv~~gD~i--~~~dl~~~~~~h~~~-~~d~tl~~~~- 154 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD--DEAFCFTYGDGV--ADIDIKALIAFHRKH-GKKATVTAVQ- 154 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC--CCeEEEEeCCeE--ecCCHHHHHHHHHHc-CCCEEEEEec-
Confidence 1112233 346788888874 467999999983 356899999988654 2333332221
Q ss_pred CCCCCCCCCceEE-EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhh
Q 022555 179 KPEDAFDPNRVKC-VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKV 257 (295)
Q Consensus 179 ~~~~~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~ 257 (295)
++..+++ ..| ++++..|.+++.+ . ...+++|+|+|++++|....... .. ..+|.+ ..+
T Consensus 155 ------~~~~yG~v~~d-~~~V~~~~Ekp~~--------~--~~~i~~Giyi~~~~il~~l~~~~-~~-~~~d~i--~~l 213 (254)
T TIGR02623 155 ------PPGRFGALDLE-GEQVTSFQEKPLG--------D--GGWINGGFFVLNPSVLDLIDGDA-TV-WEQEPL--ETL 213 (254)
T ss_pred ------CCCcccEEEEC-CCeEEEEEeCCCC--------C--CCeEEEEEEEEcHHHHhhccccC-ch-hhhhHH--HHH
Confidence 1233433 345 4688888887521 0 25789999999999986443211 11 112332 123
Q ss_pred hhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555 258 LENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 258 ~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r 292 (295)
+..| ++..++.+++|.||+||+||+.|+..+++.
T Consensus 214 ~~~~-~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 214 AQRG-ELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred HhCC-CEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 4455 689999889999999999999999998764
No 50
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.89 E-value=2.3e-21 Score=167.70 Aligned_cols=207 Identities=17% Similarity=0.237 Sum_probs=138.8
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---cCCeEEeCCC-C
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIMTSE-S 119 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~~~~v~~~~~-~ 119 (295)
+||||||.|+||+ ||+|++++|+|||+|+++.+.+. ++++|+|+++. +.+.++..+ .+.++.+..+ .
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDK 79 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEECccCHHHHHHHHCCccccCccEEEEECCC
Confidence 5899999999994 79999999999999999999987 59999999984 445555432 3444433222 2
Q ss_pred CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EECCCCe
Q 022555 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDNHGY 198 (295)
Q Consensus 120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d~~g~ 198 (295)
..|...++..+.... .+.+++++||. +....++.+++.+.++. ..+++.+.+... .+ .+.+ ..| +|+
T Consensus 80 ~~g~~~~l~~~~~~~---~~~~lv~~~D~--i~~~~~~~l~~~~~~~~-~~~~~~~~~~~~----~~-~~g~~~~d-~~~ 147 (220)
T cd06426 80 PLGTAGALSLLPEKP---TDPFLVMNGDI--LTNLNYEHLLDFHKENN-ADATVCVREYEV----QV-PYGVVETE-GGR 147 (220)
T ss_pred CCcchHHHHHHHhhC---CCCEEEEcCCE--eeccCHHHHHHHHHhcC-CCEEEEEEEcCC----CC-cceEEEEC-CCE
Confidence 223233444333332 46799999996 44568899999887642 233333333211 11 2333 345 488
Q ss_pred EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCC
Q 022555 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDA 278 (295)
Q Consensus 199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdt 278 (295)
+..+.+++. ....+++|+|+|+++++.....- .+.+.++.+ ..++..|.++.+++.++.|.||+|
T Consensus 148 v~~~~ek~~-----------~~~~~~~Giy~~~~~~~~~i~~~--~~~~l~~~~--~~~i~~~~~i~~~~~~~~w~~igt 212 (220)
T cd06426 148 ITSIEEKPT-----------HSFLVNAGIYVLEPEVLDLIPKN--EFFDMPDLI--EKLIKEGKKVGVFPIHEYWLDIGR 212 (220)
T ss_pred EEEEEECCC-----------CCCeEEEEEEEEcHHHHhhcCCC--CCcCHHHHH--HHHHHCCCcEEEEEeCCeEEeCCC
Confidence 888877641 12467899999999998765321 122233332 234567888999999889999999
Q ss_pred HHHHHHHH
Q 022555 279 PEDVEKIE 286 (295)
Q Consensus 279 peDl~~ae 286 (295)
|+||..|+
T Consensus 213 ~~dl~~a~ 220 (220)
T cd06426 213 PEDYEKAN 220 (220)
T ss_pred HHHHHhhC
Confidence 99999874
No 51
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.88 E-value=1.9e-21 Score=184.60 Aligned_cols=235 Identities=18% Similarity=0.202 Sum_probs=155.8
Q ss_pred CCceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-c-------
Q 022555 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F------- 109 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~------- 109 (295)
|.++.|||||||.|+||. ||+|+|++|+ |||+|+++++.++ ++++|+|+++. +.+.+++.+ +
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~-Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~ 79 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINS-GINKIYVLTQFNSASLNRHISQTYNFDGFSG 79 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHC-CCCEEEEEecCCHHHHHHHHhcCcCccccCC
Confidence 446889999999999994 7999999999 9999999999998 59999999983 566666642 1
Q ss_pred CCeEEeCC-CC------CCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCC
Q 022555 110 GADVIMTS-ES------CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE 181 (295)
Q Consensus 110 ~~~v~~~~-~~------~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~ 181 (295)
+...+... +. ..|...+++.++..+.. +.+.|++++||+ ++ ..+++.+++.+.+. ++.+++...++..
T Consensus 80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~-l~-~~dl~~ll~~h~~~-~a~~tl~~~~~~~- 155 (429)
T PRK02862 80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQ-LY-RMDYRLFVQHHRET-GADITLAVLPVDE- 155 (429)
T ss_pred CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EE-eCCHHHHHHHHHHc-CCCEEEEEEecCh-
Confidence 11112111 11 13445678888887742 246899999999 44 46899999988754 3333333333321
Q ss_pred CCCCCCceEE-EECCCCeEEEeecCCCCCCC-------C-----CCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcc
Q 022555 182 DAFDPNRVKC-VVDNHGYAIYFSRGLIPYNK-------S-----GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQL 248 (295)
Q Consensus 182 ~~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r-------~-----~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~ 248 (295)
.++..+++ ..|++|++..|.+++.+... + ....+....++++|+|+|++++|..+....+....+
T Consensus 156 --~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~ 233 (429)
T PRK02862 156 --KDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDF 233 (429)
T ss_pred --hhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhh
Confidence 12334444 36778999999888632000 0 000111235789999999999997543211111122
Q ss_pred cchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHH
Q 022555 249 EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 290 (295)
Q Consensus 249 ~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~ 290 (295)
.+.+ ...+..+.++.+++.+++|.||+||++|..|+..+.
T Consensus 234 ~~di--l~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~ 273 (429)
T PRK02862 234 GKEI--IPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALT 273 (429)
T ss_pred HHHH--HHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence 2121 123346778999998899999999999999997775
No 52
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.88 E-value=7.4e-21 Score=172.43 Aligned_cols=220 Identities=13% Similarity=0.153 Sum_probs=146.8
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---c----------
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---F---------- 109 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~---------- 109 (295)
.+||||||.|+||. ||+++|++|+|+|+|+++++.++ ++++|+|+++. +.+.+++.. +
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 88 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR 88 (302)
T ss_pred EEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence 39999999999994 79999999999999999999988 59999999973 445554431 0
Q ss_pred ------------CCeEEeCCCCCCCc-HHHHHHHHHHccccCCEEEEEeCCccc------CCHHHHHHHHHHHHhCCCcE
Q 022555 110 ------------GADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPL------IEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 110 ------------~~~v~~~~~~~~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pl------i~~~~i~~li~~~~~~~d~~ 170 (295)
+..+.+..+....| ..++..+...+. .+.++++.+|.++ +...++.++++.+.+....+
T Consensus 89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~t 166 (302)
T PRK13389 89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQ 166 (302)
T ss_pred HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCE
Confidence 11221111122233 356777777763 3679999999975 24578999999886543332
Q ss_pred EEEeeeeCCCCCCCCCCceEEE-EC-------CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCC
Q 022555 171 FSTAVTSLKPEDAFDPNRVKCV-VD-------NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLH 242 (295)
Q Consensus 171 v~v~~~~~~~~~~~~p~~~~v~-~d-------~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~ 242 (295)
+ .+.++. ++..++++ .+ +++++..|.|+|.+ .+.....+++|+|+|++++|..+....
T Consensus 167 l--~~~~~~-----~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~-------~~~~s~~~~~GiYi~~~~il~~l~~~~ 232 (302)
T PRK13389 167 I--MVEPVA-----DVTAYGVVDCKGVELAPGESVPMVGVVEKPKA-------DVAPSNLAIVGRYVLSADIWPLLAKTP 232 (302)
T ss_pred E--EEEEcc-----cCCcceEEEecCcccccCCcceEEEEEECCCC-------CCCCccEEEEEEEEECHHHHHHHHhCC
Confidence 2 223331 23445444 33 23578888888631 011125789999999999986554332
Q ss_pred CC---CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHH
Q 022555 243 PT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 290 (295)
Q Consensus 243 ~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~ 290 (295)
++ +++.+|.+. .++. +.+|..+..+++|+||++|+||..|...+.
T Consensus 233 ~~~~~e~~l~d~i~--~l~~-~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 233 PGAGDEIQLTDAID--MLIE-KETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred CCCCCeeeHHHHHH--HHHH-cCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 22 233444432 2333 357999988899999999999999976653
No 53
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.88 E-value=2.1e-21 Score=185.95 Aligned_cols=222 Identities=14% Similarity=0.148 Sum_probs=154.1
Q ss_pred CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCC
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR 121 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~ 121 (295)
||++.+||||||.|+||. ||+|++++|+|||+|+++.+.+. ++++++|+++. +.+++.+...++.++..+ ...
T Consensus 3 ~~~~~aiIlAaG~gtRl~~~~pK~l~~i~gkpli~~~i~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~i~~~-~~~ 80 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLVYGHGGDLLKQTLADEPLNWVLQA-EQL 80 (456)
T ss_pred CCCceEEEEcCCCCCcCCCCCChhcceeCChhHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhhccCCcEEEECC-CCC
Confidence 567889999999999995 79999999999999999999887 58999999874 455555544455665543 333
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~ 201 (295)
|...+++.++..+. +.+.+++++||+|++++.+++++++.+.+. +. ++...++ .+|..+.++.+++|++..
T Consensus 81 Gt~~al~~a~~~l~-~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~-~~--~i~~~~~-----~~~~~yG~v~~~~g~V~~ 151 (456)
T PRK09451 81 GTGHAMQQAAPFFA-DDEDILMLYGDVPLISVETLQRLRDAKPQG-GI--GLLTVKL-----DNPTGYGRITRENGKVVG 151 (456)
T ss_pred CcHHHHHHHHHhhc-cCCcEEEEeCCcccCCHHHHHHHHHHhhcC-CE--EEEEEEc-----CCCCCceEEEecCCeEEE
Confidence 55567888888774 346899999999999999999999876543 32 2222333 233345555666889999
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCC----CCCcccchhhhhhhhhCCceEEEEEe------c
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP----TPLQLEEDLEQLKVLENGYKMKVIKV------D 270 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~------~ 270 (295)
|.||+.. .. .+.....+++|+|+|+++.|..+ ..+.+ .+++.+|.+ ..++..|.++..+.. .
T Consensus 152 ~~EKp~~-~~----~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i--~~~i~~g~~v~~~~~~~~~~~~ 224 (456)
T PRK09451 152 IVEQKDA-TD----EQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDII--ALAHQEGREIVAVHPQRLSEVE 224 (456)
T ss_pred EEECCCC-Ch----HHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHH--HHHHHCCCeEEEEecCCHHHhc
Confidence 9988521 00 01112468999999999888643 22222 223344443 234567889988852 2
Q ss_pred C--CcCCCCCHHHHHHHH
Q 022555 271 H--EAHGVDAPEDVEKIE 286 (295)
Q Consensus 271 ~--~~idIdtpeDl~~ae 286 (295)
+ .|.|++++++|..++
T Consensus 225 G~~~~~di~~~~~y~~~~ 242 (456)
T PRK09451 225 GVNNRLQLARLERVYQAE 242 (456)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 2 367888888888764
No 54
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.87 E-value=1.6e-20 Score=177.23 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=151.1
Q ss_pred CCceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH-cC-----C
Q 022555 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-FG-----A 111 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~-~~-----~ 111 (295)
|.++.|||||||.|+||. ||+|+|++|+ |||+|+++++.++ ++++|+|+++ .+.+.+++.. ++ .
T Consensus 3 ~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 81 (407)
T PRK00844 3 MPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS-GYLRIYVLTQYKSHSLDRHISQTWRLSGLLG 81 (407)
T ss_pred CCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHHhCcCccccCC
Confidence 455789999999999995 7999999998 9999999999997 5999999997 4566666542 11 1
Q ss_pred eEEe-CCC-C------CCCcHHHHHHHHHHcccc-CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCC
Q 022555 112 DVIM-TSE-S------CRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED 182 (295)
Q Consensus 112 ~v~~-~~~-~------~~g~~~~i~~al~~~~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~ 182 (295)
.++. .+. . ..|...+++.++..+..+ .+.|+++.||. + ...++.++++.+.++. +.+++....+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~-v-~~~dl~~l~~~h~~~~-~~~ti~~~~~~~~- 157 (407)
T PRK00844 82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADH-V-YRMDPRQMVDFHIESG-AGVTVAAIRVPRE- 157 (407)
T ss_pred CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCE-E-EcCCHHHHHHHHHhcC-CcEEEEEEecchH-
Confidence 1221 111 1 123345788888887532 36799999998 3 3568999999887542 2223332332211
Q ss_pred CCCCCceEE-EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC---CCCcc-cchhhhhh
Q 022555 183 AFDPNRVKC-VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP---TPLQL-EEDLEQLK 256 (295)
Q Consensus 183 ~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~---~~~~~-~d~~~~~~ 256 (295)
++..+++ ..|++|++..|.++|.. +.+ .........+++|+|+|++++|.. +.+... ....+ +|.+ ..
T Consensus 158 --~~~~~Gvv~~d~~g~v~~~~eKp~~-~~~-~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii--~~ 231 (407)
T PRK00844 158 --EASAFGVIEVDPDGRIRGFLEKPAD-PPG-LPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDII--PR 231 (407)
T ss_pred --HcccCCEEEECCCCCEEEEEECCCC-ccc-ccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHH--HH
Confidence 2233433 46778999999888532 110 011112368899999999999754 332211 11112 2222 12
Q ss_pred hhhCCceEEEEEe------------cCCcCCCCCHHHHHHHHHHHHH
Q 022555 257 VLENGYKMKVIKV------------DHEAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 257 ~~~~G~~v~~v~~------------~~~~idIdtpeDl~~ae~ll~~ 291 (295)
++..| ++..++. +++|.||++|+||..|+..+..
T Consensus 232 l~~~~-~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~ 277 (407)
T PRK00844 232 LVERG-RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLS 277 (407)
T ss_pred HhccC-eEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhC
Confidence 33344 6888754 4789999999999999977764
No 55
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.87 E-value=2.5e-20 Score=165.10 Aligned_cols=214 Identities=15% Similarity=0.164 Sum_probs=145.8
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc---C--CeEE----
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF---G--ADVI---- 114 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~---~--~~v~---- 114 (295)
|||||||.|+||. ||+|+|++|+|||+|+++.+.+. ++++|+|+++ .+.++++..+. + +.+.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHY-GHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhC-CCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 6899999999994 79999999999999999999988 5999999997 46677666542 1 2221
Q ss_pred ----eCCCC------------CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeC
Q 022555 115 ----MTSES------------CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL 178 (295)
Q Consensus 115 ----~~~~~------------~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~ 178 (295)
.++.. ..+...+++.|+..+.. .+.|++++||.. + ...+..+++.+... ++.+++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-~~~~lv~~gD~i-~-~~dl~~ll~~h~~~-~~~~tl~~~~- 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-DETFMLTYGDGV-S-DVNINALIEFHRSH-GKLATVTAVH- 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-CCeEEEEcCCEE-E-CCCHHHHHHHHHHc-CCCEEEEEec-
Confidence 11100 11233468888888742 268999999984 3 35678999877654 2323332221
Q ss_pred CCCCCCCCCceE-EEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhh
Q 022555 179 KPEDAFDPNRVK-CVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKV 257 (295)
Q Consensus 179 ~~~~~~~p~~~~-v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~ 257 (295)
++..+. +..|++|++..+.+++.+ ....+++|+|+|+++++..+... ...+ .++.+ ..+
T Consensus 155 ------~~~~~g~v~~d~~g~V~~~~ekp~~----------~~~~i~~Giyi~~~~l~~~l~~~-~~~~-~~d~l--~~l 214 (253)
T cd02524 155 ------PPGRFGELDLDDDGQVTSFTEKPQG----------DGGWINGGFFVLEPEVFDYIDGD-DTVF-EREPL--ERL 214 (253)
T ss_pred ------CCCcccEEEECCCCCEEEEEECCCC----------CCceEEEEEEEECHHHHHhhccc-cchh-hHHHH--HHH
Confidence 112232 346778999988887531 01468899999999988655432 1111 12222 233
Q ss_pred hhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555 258 LENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 258 ~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r 292 (295)
+..| ++.+++.+++|.|||+++||+.|++++...
T Consensus 215 i~~~-~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 215 AKDG-ELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred HhcC-CEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 4455 688888888999999999999999998654
No 56
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.87 E-value=8.6e-21 Score=165.53 Aligned_cols=209 Identities=19% Similarity=0.189 Sum_probs=136.9
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHH-----HHHHHH--cCCeEEeCCC
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI-----AECCQQ--FGADVIMTSE 118 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i-----~~~~~~--~~~~v~~~~~ 118 (295)
.||||||.|+||. ||+|++++|+|||+|+++.+.+.+ +++++|+++.+.. ....+. .++.++..+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g-~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIF-DSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDG 79 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccC-CceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCC
Confidence 4899999999994 799999999999999999999885 9999999874322 222221 2456555544
Q ss_pred CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCe
Q 022555 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~ 198 (295)
...|...++..|+..+. ..+.+++++||+ +++. .+..+++.+.+.. ...++..... ..+.+..+..|++|+
T Consensus 80 ~~~g~~~~l~~a~~~l~-~~~~~lv~~~D~-i~~~-~~~~~~~~~~~~~-~~~~i~~~~~-----~~~~~~~v~~d~~~~ 150 (231)
T cd04183 80 ETLGAACTVLLAADLID-NDDPLLIFNCDQ-IVES-DLLAFLAAFRERD-LDGGVLTFFS-----SHPRWSYVKLDENGR 150 (231)
T ss_pred CCCcHHHHHHHHHhhcC-CCCCEEEEecce-eecc-CHHHHHHHhhccC-CceEEEEEeC-----CCCCeEEEEECCCCC
Confidence 45566678888888874 236799999999 4444 5666776665432 1112222221 122333445678888
Q ss_pred EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHH-HHhh-ccc---CCC---CCCcccchhhhhhhhhCCceEEEEEe-
Q 022555 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSN-FLKI-YPG---LHP---TPLQLEEDLEQLKVLENGYKMKVIKV- 269 (295)
Q Consensus 199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~-~l~~-~~~---~~~---~~~~~~d~~~~~~~~~~G~~v~~v~~- 269 (295)
+..+.++.. .....++|+|+|+++ .+.. +.. ... .+...++.+ ..++..|.+|.++..
T Consensus 151 v~~~~ek~~-----------~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i--~~~~~~g~~v~~~~~~ 217 (231)
T cd04183 151 VIETAEKEP-----------ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLY--NELILDGKKVGIYLID 217 (231)
T ss_pred EEEeEEcCC-----------CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHH--HHHHHcCCEEEEEEec
Confidence 887766521 124679999999987 4432 221 111 112223332 234567889999998
Q ss_pred cCCcCCCCCHHHHH
Q 022555 270 DHEAHGVDAPEDVE 283 (295)
Q Consensus 270 ~~~~idIdtpeDl~ 283 (295)
++.|.|||||+||+
T Consensus 218 ~~~w~di~t~~dl~ 231 (231)
T cd04183 218 KDDYHSFGTPEDLE 231 (231)
T ss_pred cccEEEcCChHhcC
Confidence 58999999999984
No 57
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.87 E-value=1.8e-20 Score=178.39 Aligned_cols=235 Identities=17% Similarity=0.231 Sum_probs=155.0
Q ss_pred CCceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-c--C----
Q 022555 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--G---- 110 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~--~---- 110 (295)
|.++.|||||||.|+||. ||+|+|++|+ |||+|+++.+.++ ++++|+|+++. +.+.++++. + +
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~ 79 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINS-GINKIYVLTQFNSASLNRHLSRAYNFGNGGN 79 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhC-CCCEEEEEeccCHHHHHHHHhccCCCCCCcc
Confidence 456889999999999995 7999999997 9999999999987 59999999974 566666543 1 1
Q ss_pred -----CeEEeCCCC-----CCCc-HHHHHHHHHHcccc----CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEee
Q 022555 111 -----ADVIMTSES-----CRNG-TERCNEALQKLEKK----YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV 175 (295)
Q Consensus 111 -----~~v~~~~~~-----~~g~-~~~i~~al~~~~~~----~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~ 175 (295)
+.+....+. ...| ..+++.++..+... .+.|+++++|. +. ..++.++++.|+++ ++.+++..
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~-v~-~~dl~~ll~~h~~~-~a~~ti~~ 156 (436)
T PLN02241 80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDH-LY-RMDYMDFVQKHRES-GADITIAC 156 (436)
T ss_pred cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCe-EE-ccCHHHHHHHHHHc-CCCEEEEE
Confidence 112111111 1223 35566666554321 36899999999 43 46799999988765 34344444
Q ss_pred eeCCCCCCCCCCceEE-EECCCCeEEEeecCCCCCCCCC-------------CCCCCCCceEEEeEEEecHHHHhhc-cc
Q 022555 176 TSLKPEDAFDPNRVKC-VVDNHGYAIYFSRGLIPYNKSG-------------KVNPQFPYLLHLGIQSYDSNFLKIY-PG 240 (295)
Q Consensus 176 ~~~~~~~~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r~~-------------~~~~~~p~~~~~Giyif~~~~l~~~-~~ 240 (295)
.++..+ ++..+.+ .+|+++++..|.|+|.. +... ...+..+...++|+|+|++++|..+ ..
T Consensus 157 ~~v~~~---~~~~ygvv~~d~~~~v~~~~Ekp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~ 232 (436)
T PLN02241 157 LPVDES---RASDFGLMKIDDTGRIIEFSEKPKG-DELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRW 232 (436)
T ss_pred Eecchh---hcCcceEEEECCCCCEEEEEECCCC-cccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHh
Confidence 444321 2233433 45778999999988521 1100 0001113688999999999998653 32
Q ss_pred CCCCCCcc-cchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHH
Q 022555 241 LHPTPLQL-EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 241 ~~~~~~~~-~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~ 291 (295)
..+..... .|.+ ..++..|.+|++++.+++|.||++|+||..|+..+..
T Consensus 233 ~~~~~~~~~~dil--~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~ 282 (436)
T PLN02241 233 RFPTANDFGSEII--PGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTK 282 (436)
T ss_pred hcccccchhHHHH--HHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhc
Confidence 22221111 2222 1234467899999998999999999999999987653
No 58
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.86 E-value=1.6e-20 Score=160.78 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=95.1
Q ss_pred CCCCceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCc
Q 022555 45 NFRSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNG 123 (295)
Q Consensus 45 ~~~~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~ 123 (295)
.-.|++.+||||||+|+||+ +|++++++|+|||+|+++++.. .+++|+|++++.+........++.++.++....|+
T Consensus 3 ~~~~~~~~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~l~~--~~~~ivvv~~~~~~~~~~~~~~~~~i~~~~~~~G~ 80 (200)
T PRK02726 3 TVKNNLVALILAGGKSSRMGQDKALLPWQGVPLLQRVARIAAA--CADEVYIITPWPERYQSLLPPGCHWLREPPPSQGP 80 (200)
T ss_pred CcCCCceEEEEcCCCcccCCCCceeeEECCEeHHHHHHHHHHh--hCCEEEEECCCHHHHHhhccCCCeEecCCCCCCCh
Confidence 34577899999999999997 8999999999999999999975 37899999985433222222356666655555678
Q ss_pred HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
..+++.|+..+. .+++++++||+||+++++++.+++.+..
T Consensus 81 ~~si~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 81 LVAFAQGLPQIK--TEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred HHHHHHHHHhCC--CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 889999999884 5789999999999999999999998754
No 59
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.86 E-value=8.3e-21 Score=177.05 Aligned_cols=224 Identities=13% Similarity=0.117 Sum_probs=143.8
Q ss_pred ceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--h-HHHHHHHH---cCCe---
Q 022555 49 RVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--E-KIAECCQQ---FGAD--- 112 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~-~i~~~~~~---~~~~--- 112 (295)
.+.|||||||.|+||. ||+|+|++|+ |||+|+++.|.++ ++++|+|+++. + .+++++.+ ++.+
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~-Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNA-GIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhcc-CCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3569999999999995 7999999999 9999999999998 59999999985 4 77777742 2322
Q ss_pred ----E-EeCCCCC--CCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCC
Q 022555 113 ----V-IMTSESC--RNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF 184 (295)
Q Consensus 113 ----v-~~~~~~~--~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~ 184 (295)
+ +..++.. .|+..++..++..+.. ..+.|+++++|. +...++.++++.|.++ ++.+++...++..+
T Consensus 81 ~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~--l~~~dl~~ll~~h~~~-~a~~tl~~~~v~~~--- 154 (369)
T TIGR02092 81 DGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHM--VCNIDLKAVLKYHEET-GKDITVVYKKVKPA--- 154 (369)
T ss_pred CcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCE--EEecCHHHHHHHHHHc-CCCEEEEEEecCHH---
Confidence 1 2222221 1333346677777631 246899999998 4457899999988764 33344443443211
Q ss_pred CCCce--EEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCCC-CCcccchhhhhhhhhC
Q 022555 185 DPNRV--KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHPT-PLQLEEDLEQLKVLEN 260 (295)
Q Consensus 185 ~p~~~--~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~~-~~~~~d~~~~~~~~~~ 260 (295)
++..+ .+..+++|.+..+.++. + ++.+...++|+|+|+++.|..+. ...+. .....+.+. ..++ .
T Consensus 155 ~~~~~g~vv~~~~~g~v~~~~~~~-~--------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i-~~~~-~ 223 (369)
T TIGR02092 155 DASEYDTILRFDESGKVKSIGQNL-N--------PEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELI-RENL-K 223 (369)
T ss_pred HccccCcEEEEcCCCCEEeccccC-C--------CCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHH-HHHh-c
Confidence 12222 23356667776653322 1 11134578999999998764322 11111 111111110 1122 3
Q ss_pred CceEEEEEecCCcCCCCCHHHHHHHHHHHH
Q 022555 261 GYKMKVIKVDHEAHGVDAPEDVEKIESFMR 290 (295)
Q Consensus 261 G~~v~~v~~~~~~idIdtpeDl~~ae~ll~ 290 (295)
+.++..+..+++|+||+||+||..|+..+.
T Consensus 224 ~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l 253 (369)
T TIGR02092 224 ELNINAYEYTGYLANINSVKSYYKANMDLL 253 (369)
T ss_pred cCcEEEEecCCceeEcCCHHHHHHHHHHHh
Confidence 567888888889999999999999995443
No 60
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.86 E-value=2.6e-20 Score=158.34 Aligned_cols=114 Identities=25% Similarity=0.371 Sum_probs=92.0
Q ss_pred CCceEEEEEcCCCCCCC-C-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCC-CCCc
Q 022555 47 RSRVVGIIPARFASSRF-E-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSES-CRNG 123 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl-~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~-~~g~ 123 (295)
||++.+||||||.|+|| + +|++++++|+|||+|+++.+. +.+++|+|+++.+. .. ..+.++.++.++.. ..|.
T Consensus 1 ~~~~~~vILA~G~s~Rm~~~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~-~~-~~~~~~~~v~~~~~~~~g~ 76 (193)
T PRK00317 1 MPPITGVILAGGRSRRMGGVDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL-AR-YAAFGLPVIPDSLADFPGP 76 (193)
T ss_pred CCCceEEEEcCCCcccCCCCCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh-HH-HHhcCCcEEeCCCCCCCCC
Confidence 67889999999999999 4 899999999999999999998 36899999987542 22 23456666554322 2466
Q ss_pred HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
..+++.|+... +.+.+++++||+||+++++++.+++.+.+.
T Consensus 77 ~~~i~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 77 LAGILAGLKQA--RTEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred HHHHHHHHHhc--CCCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 77899999875 468999999999999999999999987543
No 61
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.86 E-value=8e-20 Score=173.37 Aligned_cols=232 Identities=14% Similarity=0.109 Sum_probs=150.7
Q ss_pred CceEEEEEcCCCCCCCC------CccccccCCcc-hHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-cC------C
Q 022555 48 SRVVGIIPARFASSRFE------GKPLVNILGKP-MIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FG------A 111 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkp-Ll~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~~------~ 111 (295)
+++.|||||||.|+||. ||+|+|++|+| ||+|+++.+.++ ++++|+|+++. +.+.+++.+ ++ .
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~-Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~ 92 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINS-GIRRIGVLTQYKAHSLIRHIQRGWSFFREELG 92 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHC-CCCeEEEEecCCHHHHHHHHHhhhcccccCCC
Confidence 45789999999999995 79999999997 999999999987 59999999983 556555543 21 1
Q ss_pred -eEE-eCC------CC-CCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCC
Q 022555 112 -DVI-MTS------ES-CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE 181 (295)
Q Consensus 112 -~v~-~~~------~~-~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~ 181 (295)
.+. ..+ +. ..|...+++.++..+.. ..+.|++++||+ + ...++.++++.+.++. +.+++...++..
T Consensus 93 ~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~-l-~~~dl~~ll~~h~~~~-~~~tl~~~~~~~- 168 (425)
T PRK00725 93 EFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDH-I-YKMDYSRMLADHVESG-ADCTVACLEVPR- 168 (425)
T ss_pred CeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCe-E-eccCHHHHHHHHHHcC-CCEEEEEEecch-
Confidence 111 111 11 13444678888888752 246899999998 3 3568999999887642 223333333321
Q ss_pred CCCCCCceEE-EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC---CCCcc-cchhhhh
Q 022555 182 DAFDPNRVKC-VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP---TPLQL-EEDLEQL 255 (295)
Q Consensus 182 ~~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~---~~~~~-~d~~~~~ 255 (295)
.++..+++ ..|++|++..|.|+|.. +.+ ...+.....+++|+|+|++++|.. +.+... ...++ +|.+
T Consensus 169 --~~~~~yG~v~~d~~~~V~~~~EKp~~-~~~-~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii--- 241 (425)
T PRK00725 169 --EEASAFGVMAVDENDRITAFVEKPAN-PPA-MPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDII--- 241 (425)
T ss_pred --hhcccceEEEECCCCCEEEEEECCCC-ccc-cccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHH---
Confidence 12334444 46778899999887531 110 001112468899999999998754 322211 11122 2322
Q ss_pred hhhhCCceEEEEEec-----------CCcCCCCCHHHHHHHHHHHHH
Q 022555 256 KVLENGYKMKVIKVD-----------HEAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 256 ~~~~~G~~v~~v~~~-----------~~~idIdtpeDl~~ae~ll~~ 291 (295)
..+....++..++.. ++|.||++|+||..|+..+..
T Consensus 242 ~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~ 288 (425)
T PRK00725 242 PKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLAS 288 (425)
T ss_pred HHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcC
Confidence 222233468887764 589999999999999877643
No 62
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.86 E-value=2.3e-20 Score=162.65 Aligned_cols=211 Identities=21% Similarity=0.215 Sum_probs=136.3
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-cCCeEEeCCCC-CC
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FGADVIMTSES-CR 121 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~~~~v~~~~~~-~~ 121 (295)
|||||||.|+||+ ||++++++|+|||+|+++++.+. ++++|+|+++. +.+.+++.. .++.++.+++. ..
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAET 79 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHC-CCceEEEEeccCHHHHHHHHhccCCeEEEeCcchhhh
Confidence 6899999999996 79999999999999999999988 59999999984 455555544 35676666543 34
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~ 201 (295)
|...++..++..+ .+.+++++||+++ +.+.++.+++ .+.+..+.+ .+... + ....+.+..++++.+..
T Consensus 80 g~~~s~~~~~~~~---~~~~lv~~~D~~~-~~~~~~~~~~---~~~~~~~~~--~~~~~-~--~~~~~~~~~~~~~~v~~ 147 (229)
T cd02523 80 NNIYSLYLARDFL---DEDFLLLEGDVVF-DPSILERLLS---SPADNAILV--DKKTK-E--WEDEYVKDLDDAGVLLG 147 (229)
T ss_pred CcHHHHHHHHHHc---CCCEEEEeCCEec-CHHHHHHHHc---CCCCCeEEE--ccCcc-c--ccccceeeecCccceEe
Confidence 5557788888887 3679999999975 6655554442 233433332 33211 1 11233333333366666
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC----CC---CCCcccchhhhhhhhh-CCceEEEEEecCCc
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL----HP---TPLQLEEDLEQLKVLE-NGYKMKVIKVDHEA 273 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~----~~---~~~~~~d~~~~~~~~~-~G~~v~~v~~~~~~ 273 (295)
+.+++.. .......++|+|+|+++++..+... .+ .....++.+ ..++. .+.++..+.. ++|
T Consensus 148 ~~~k~~~--------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i--~~l~~~~~~~v~~~~~-~~w 216 (229)
T cd02523 148 IISKAKN--------LEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDAL--QRLISEEGVKVKDISD-GFW 216 (229)
T ss_pred ecccCCC--------cchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHH--HHHHhhcCeeEEEcCC-CCE
Confidence 6565321 1113468999999999997754321 11 112223322 12333 3555555555 799
Q ss_pred CCCCCHHHHHHHH
Q 022555 274 HGVDAPEDVEKIE 286 (295)
Q Consensus 274 idIdtpeDl~~ae 286 (295)
.|||+|+||..|+
T Consensus 217 ~dI~~~ed~~~a~ 229 (229)
T cd02523 217 YEIDDLEDLERAE 229 (229)
T ss_pred EEeCCHHHHHhhC
Confidence 9999999999874
No 63
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.85 E-value=1e-19 Score=173.91 Aligned_cols=219 Identities=19% Similarity=0.234 Sum_probs=146.3
Q ss_pred EEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555 51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTE 125 (295)
Q Consensus 51 ~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~~ 125 (295)
.|||||||+|+||+ ||+|++++|+|||+|+++++.+. .++|+|+++. +.+.++.. .++.++..+ ...|...
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v~gkpli~~~l~~l~~~--~~~i~vv~~~~~~~i~~~~~-~~~~~~~~~-~~~g~~~ 77 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKISGKPMINWVIDTAKKV--AQKVGVVLGHEAELVKKLLP-EWVKIFLQE-EQLGTAH 77 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEECCeeHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHhcc-cccEEEecC-CCCChHH
Confidence 49999999999996 79999999999999999999875 4889888874 33433332 245554443 3335556
Q ss_pred HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecC
Q 022555 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG 205 (295)
Q Consensus 126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~ 205 (295)
+++.++..+. +.+.++++++|+|+++..+++++++.+.++ ++.+++...++ .+|..+.++..++|++ .+.++
T Consensus 78 ai~~a~~~l~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~-~~d~ti~~~~~-----~~~~~~g~v~~d~g~v-~~~e~ 149 (448)
T PRK14357 78 AVMCARDFIE-PGDDLLILYGDVPLISENTLKRLIEEHNRK-GADVTILVADL-----EDPTGYGRIIRDGGKY-RIVED 149 (448)
T ss_pred HHHHHHHhcC-cCCeEEEEeCCcccCCHHHHHHHHHHHHhc-CCeEEEEEEEc-----CCCCCcEEEEEcCCeE-EEEEC
Confidence 7888988884 247899999999999999999999988653 33344444444 2344454443336777 55554
Q ss_pred CCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCC----CCcccchhhhhhhhhCCceEEEEEecC--CcCCCCC
Q 022555 206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPT----PLQLEEDLEQLKVLENGYKMKVIKVDH--EAHGVDA 278 (295)
Q Consensus 206 ~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~~--~~idIdt 278 (295)
+.. + . ..+..+..++|+|+|++++|.. +.++.+. ++..+|.+. .+ .++..+...+ .|+++++
T Consensus 150 ~~~-~--~--~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~---~~---~~v~~~~~~~~~~~~~i~~ 218 (448)
T PRK14357 150 KDA-P--E--EEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVN---FA---EKVRVVKTEDLLEITGVNT 218 (448)
T ss_pred CCC-C--h--HHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHH---hh---hheeEEecCCHHHEEccCC
Confidence 211 0 0 0111247899999999998755 3333211 122333321 11 3466766554 4889999
Q ss_pred HHHHHHHHHHHHHh
Q 022555 279 PEDVEKIESFMRER 292 (295)
Q Consensus 279 peDl~~ae~ll~~r 292 (295)
|+||+.++.++.++
T Consensus 219 ~~~l~~~~~~~~~~ 232 (448)
T PRK14357 219 RIQLAWLEKQLRMR 232 (448)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888654
No 64
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1.9e-20 Score=159.21 Aligned_cols=214 Identities=20% Similarity=0.238 Sum_probs=146.6
Q ss_pred ceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEEC-C--chHHHHHHHHcC--CeEEeCCCCC
Q 022555 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVAT-D--DEKIAECCQQFG--ADVIMTSESC 120 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~-~--~~~i~~~~~~~~--~~v~~~~~~~ 120 (295)
-..|||||||.||||+ ||+|++++|+|+|+|++++|++. ++++++||+ + .+.++.+.++++ ..+++++...
T Consensus 3 ~~kavILAAG~GsRlg~~~PK~Lvev~gr~ii~~~i~~L~~~-gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~y~ 81 (239)
T COG1213 3 PMKAVILAAGFGSRLGPDIPKALVEVGGREIIYRTIENLAKA-GITEFVVVTNGYRADLVEEFLKKYPFNAKIVINSDYE 81 (239)
T ss_pred ceeEEEEecccccccCCCCCchhhhcCCeEeHHHHHHHHHHc-CCceEEEEeccchHHHHHHHHhcCCcceEEEeCCCcc
Confidence 3569999999999997 79999999999999999999998 599999999 4 466777777776 4557776655
Q ss_pred CCc-HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEee-eeCCCCCCCCCCceEEEECCCCe
Q 022555 121 RNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV-TSLKPEDAFDPNRVKCVVDNHGY 198 (295)
Q Consensus 121 ~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~-~~~~~~~~~~p~~~~v~~d~~g~ 198 (295)
.+. ..+++.|.+.+. ..|+++++|. +.++..+++++++-. ...++... ..+..++ ...+.+++|+
T Consensus 82 ktN~~~Sl~~akd~~~---~~fii~~sD~-vye~~~~e~l~~a~~---~~li~d~~~~~~~~~e------a~kv~~e~G~ 148 (239)
T COG1213 82 KTNTGYSLLLAKDYMD---GRFILVMSDH-VYEPSILERLLEAPG---EGLIVDRRPRYVGVEE------ATKVKDEGGR 148 (239)
T ss_pred cCCceeEEeeehhhhc---CcEEEEeCCE-eecHHHHHHHHhCcC---CcEEEeccccccccCc------eeEEEecCCE
Confidence 555 457888999884 3499999999 668889998887542 22222211 1111111 2224678999
Q ss_pred EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC-CCC-CCcccchhhhhhhhhCCceEEEEEe---cCCc
Q 022555 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL-HPT-PLQLEEDLEQLKVLENGYKMKVIKV---DHEA 273 (295)
Q Consensus 199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~-~~~-~~~~~d~~~~~~~~~~G~~v~~v~~---~~~~ 273 (295)
+..+.++.. ......+|+..|+.+++....++ ... ..+..+. ....+.+...+.. ...|
T Consensus 149 i~~igK~l~-----------e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~~~~-----~~~~~~~~~~~di~~~g~~w 212 (239)
T COG1213 149 IVEIGKDLT-----------EYDGEDIGIFILSDSIFEDTYELLVERSEYDYREV-----EKEAGLPFTEVDIHVDGLFW 212 (239)
T ss_pred EehhcCCcc-----------cccceeeeeEEechHHHHHHHHHHhhhhhHHHHHH-----HHHhCCceEEeeccccCcee
Confidence 987666521 14567899999999987754322 111 1111111 1113344443332 2689
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 022555 274 HGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 274 idIdtpeDl~~ae~ll~~r 292 (295)
+|||||||+.+|.+.+-..
T Consensus 213 ~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 213 MEVDTPEDLERARKYLVPN 231 (239)
T ss_pred EecCCHHHHHHHHHHHHHH
Confidence 9999999999999887553
No 65
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.85 E-value=8.5e-20 Score=159.69 Aligned_cols=111 Identities=35% Similarity=0.583 Sum_probs=88.9
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCc----hHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQFGADVIMTSESCRNGTERC 127 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~----~~i~~~~~~~~~~v~~~~~~~~g~~~~i 127 (295)
+||||||+|+||++|+|++++|+||++|+++++.+++.+++|+|+++. +.+..++...++.++.++.. ++..+.
T Consensus 2 aiIlA~G~S~R~~~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~v~~v~~~~~--~~l~~~ 79 (233)
T cd02518 2 AIIQARMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLGVKVFRGSEE--DVLGRY 79 (233)
T ss_pred EEEeeCCCCCCCCCCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHcCCeEEECCch--hHHHHH
Confidence 799999999999999999999999999999999987558999999974 35666666667877766432 333333
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
..++... +.+++++++||+||+++++++++++.+..+
T Consensus 80 ~~~~~~~--~~d~vli~~~D~P~i~~~~i~~li~~~~~~ 116 (233)
T cd02518 80 YQAAEEY--NADVVVRITGDCPLIDPEIIDAVIRLFLKS 116 (233)
T ss_pred HHHHHHc--CCCEEEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence 4444433 468999999999999999999999988753
No 66
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.85 E-value=2.5e-20 Score=156.61 Aligned_cols=107 Identities=25% Similarity=0.391 Sum_probs=91.3
Q ss_pred EEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHH
Q 022555 51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNE 129 (295)
Q Consensus 51 ~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~ 129 (295)
.+||||||+|+||+ +|++++++|+|||+|+++++.+. +++|+|+++.+... ....++.++.++....|+..++..
T Consensus 2 ~~iILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~--~~~~~~~~v~~~~~~~G~~~si~~ 77 (181)
T cd02503 2 TGVILAGGKSRRMGGDKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER--YALLGVPVIPDEPPGKGPLAGILA 77 (181)
T ss_pred cEEEECCCccccCCCCceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH--HhhcCCcEeeCCCCCCCCHHHHHH
Confidence 58999999999997 89999999999999999999865 78999999865433 334577776665445677889999
Q ss_pred HHHHccccCCEEEEEeCCcccCCHHHHHHHHHHH
Q 022555 130 ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (295)
Q Consensus 130 al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~ 163 (295)
|+..+. .+.+++++||+||+++++++.+++.+
T Consensus 78 ~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 78 ALRAAP--ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred HHHhcC--CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 999874 68999999999999999999999887
No 67
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.85 E-value=3.4e-20 Score=172.36 Aligned_cols=228 Identities=14% Similarity=0.143 Sum_probs=147.0
Q ss_pred EEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-cC--------CeE
Q 022555 52 GIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FG--------ADV 113 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~~--------~~v 113 (295)
|||||||.|+||. ||+|+|++|+ |||+|+++.+.+. ++++|+|+++. +.+.+++.+ ++ +.+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTL 79 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEeccChHHHHHHHHhccCccCccCCCEEE
Confidence 6899999999996 7999999999 8999999999988 59999999973 556665542 11 122
Q ss_pred Ee------CCCCCCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEeeeeCCCCCCCC
Q 022555 114 IM------TSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLKPEDAFD 185 (295)
Q Consensus 114 ~~------~~~~~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~-d~~v~v~~~~~~~~~~~~ 185 (295)
+. .++...|...+++.++..+.. ..+.|+++.||+ +. ...+.++++.+.+.. +..+.+ .++..+ +
T Consensus 80 ~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~-l~-~~~l~~~l~~~~~~~~~~ti~~--~~~~~~---~ 152 (361)
T TIGR02091 80 LPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDH-IY-KMDYEKMLDYHIESGADVTIAC--IPVPRK---E 152 (361)
T ss_pred eCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EE-cCCHHHHHHHHHHcCCCEEEEE--EecChH---h
Confidence 11 011123445678888887742 246799999999 33 457889998886542 233222 333211 2
Q ss_pred CCce-EEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCCC---CCcc-cchhhhhhhhh
Q 022555 186 PNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHPT---PLQL-EEDLEQLKVLE 259 (295)
Q Consensus 186 p~~~-~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~~---~~~~-~d~~~~~~~~~ 259 (295)
+..+ .+..|++|++..|.+|+.. +.+. ...+.-+++++|+|+|++++|..+ ...... .... .+.+ ..++.
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~-~~~~-~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l--~~l~~ 228 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPAN-PPSI-PGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDII--PRALE 228 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCC-cccc-cccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHH--HHHhh
Confidence 2234 3346778899888887531 1111 001111378999999999997543 221111 1111 1222 12333
Q ss_pred CCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555 260 NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 260 ~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r 292 (295)
. .++..+..+.+|.||+|++||..|+..+.++
T Consensus 229 ~-~~v~~~~~~~~w~digt~~~~~~a~~~~l~~ 260 (361)
T TIGR02091 229 E-GSVQAYLFSGYWRDVGTIDSFWEANMDLVSV 260 (361)
T ss_pred c-CceEEEeeCCEEEECCCHHHHHHHHHHHhCC
Confidence 3 4799998888999999999999998777653
No 68
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.85 E-value=7e-20 Score=154.57 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=91.5
Q ss_pred EEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555 52 GIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERC 127 (295)
Q Consensus 52 aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~~~v~~~~~~~~g~~~~i 127 (295)
+||||||+|+||+ +|++++++|+|||+|+++++.+. .+++|+|+++++. +..++..+++.++.++....|+..++
T Consensus 2 ~iIla~G~s~R~g~~K~ll~~~g~pll~~~i~~l~~~-~~~~iivv~~~~~~~~~~~~~~~~~v~~v~~~~~~~g~~~si 80 (188)
T TIGR03310 2 AIILAAGLSSRMGQNKLLLPYKGKTILEHVVDNALRL-FFDEVILVLGHEADELVALLANHSNITLVHNPQYAEGQSSSI 80 (188)
T ss_pred eEEECCCCcccCCCCceecccCCeeHHHHHHHHHHHc-CCCcEEEEeCCcHHHHHHHhccCCCeEEEECcChhcCHHHHH
Confidence 7999999999996 89999999999999999999887 4899999998654 33333345677766554445667788
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~ 167 (295)
..|++. ..+.+.+++++||+||++++.++++++.+..+.
T Consensus 81 ~~~l~~-~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 119 (188)
T TIGR03310 81 KLGLEL-PVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKN 119 (188)
T ss_pred HHHhcC-CCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCC
Confidence 888872 224579999999999999999999999876543
No 69
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.85 E-value=2e-20 Score=153.97 Aligned_cols=114 Identities=32% Similarity=0.494 Sum_probs=99.7
Q ss_pred EEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHH
Q 022555 52 GIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA 130 (295)
Q Consensus 52 aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~a 130 (295)
+||||||+||||+ +|+|++++|+|||+|+++.+.+.+ +++|+|+++.+++...+...+++++.++....|...+++.|
T Consensus 1 ~vILa~G~s~Rmg~~K~l~~i~g~~li~~~l~~l~~~~-~~~Ivvv~~~~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a 79 (160)
T PF12804_consen 1 AVILAAGKSSRMGGPKALLPIGGKPLIERVLEALREAG-VDDIVVVTGEEEIYEYLERYGIKVVVDPEPGQGPLASLLAA 79 (160)
T ss_dssp EEEEESSSCGGGTSCGGGSEETTEEHHHHHHHHHHHHT-ESEEEEEESTHHHHHHHTTTTSEEEE-STSSCSHHHHHHHH
T ss_pred CEEECCcCcccCCCCccceeECCccHHHHHHHHhhccC-CceEEEecChHHHHHHHhccCceEEEeccccCChHHHHHHH
Confidence 6999999999997 899999999999999999999885 89999999998777777777899888765566778899999
Q ss_pred HHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 022555 131 LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167 (295)
Q Consensus 131 l~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~ 167 (295)
+..+. ..+.|++++||+||+++++++++++.+.+++
T Consensus 80 ~~~~~-~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~ 115 (160)
T PF12804_consen 80 LSQLP-SSEPVLVLPCDQPFLSPELLRRLLEALEKSP 115 (160)
T ss_dssp HHTST-TSSEEEEEETTETTS-HHHHHHHHHHHHHTT
T ss_pred HHhcc-cCCCcEEEeCCccccCHHHHHHHHHHHhccC
Confidence 99874 4689999999999999999999999987643
No 70
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.85 E-value=9.7e-20 Score=154.44 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=91.1
Q ss_pred EEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH--HHHHH----HHcCCeEEeCCCCCCCc
Q 022555 51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK--IAECC----QQFGADVIMTSESCRNG 123 (295)
Q Consensus 51 ~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~--i~~~~----~~~~~~v~~~~~~~~g~ 123 (295)
.+||||||+|+||+ +|++++++|+|||+|+++.+.+. .+++|+|+++.+. +.... ...++.++..+....|.
T Consensus 2 ~~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (190)
T TIGR03202 2 VAIYLAAGQSRRMGENKLALPLGETTLGSASLKTALSS-RLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQ 80 (190)
T ss_pred eEEEEcCCccccCCCCceeceeCCccHHHHHHHHHHhC-CCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhH
Confidence 58999999999997 89999999999999999887765 5899999997532 11111 12345565555555566
Q ss_pred HHHHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 022555 124 TERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167 (295)
Q Consensus 124 ~~~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~ 167 (295)
.+++..|++.+. .+.|++++++||+||+++++++++++.+.+.+
T Consensus 81 ~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 81 AHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 788999998763 24689999999999999999999999876543
No 71
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=1.2e-18 Score=151.09 Aligned_cols=224 Identities=14% Similarity=0.144 Sum_probs=159.7
Q ss_pred eEEEEEcCCCCCCC-C-----CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--h----------HHHHHH-----
Q 022555 50 VVGIIPARFASSRF-E-----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--E----------KIAECC----- 106 (295)
Q Consensus 50 i~aiIlAaG~gsRl-~-----~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~----------~i~~~~----- 106 (295)
..|||||||.|||| | ||-|+|+-+||+|+|+++.+.++ ++++|++||+. . +++..+
T Consensus 5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~a-GIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K 83 (291)
T COG1210 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGK 83 (291)
T ss_pred cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHc-CCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCH
Confidence 45999999999999 5 89999999999999999999998 59999999962 1 222221
Q ss_pred -------HHc--CCeEE-eCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCC-HHHHHHHHHHHHhCCCcEEEEee
Q 022555 107 -------QQF--GADVI-MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAV 175 (295)
Q Consensus 107 -------~~~--~~~v~-~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~-~~~i~~li~~~~~~~d~~v~v~~ 175 (295)
++. .+++. .+.....|-.+++..|-..++ ++.|.++.+|.-+.+ ...+.+|++.+.+...+++++.
T Consensus 84 ~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg--~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~- 160 (291)
T COG1210 84 RELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVE- 160 (291)
T ss_pred HHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcC--CCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEE-
Confidence 111 34443 333233333456777878884 578999999986554 4688999999988666777763
Q ss_pred eeCCCCCCCCCCceEEEE----CCCC--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC---CCC
Q 022555 176 TSLKPEDAFDPNRVKCVV----DNHG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---TPL 246 (295)
Q Consensus 176 ~~~~~~~~~~p~~~~v~~----d~~g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~---~~~ 246 (295)
++..++.. .|+++. .+++ ++..+.|||.+. ...+++...|-|+|++++|+.+.+..+ .++
T Consensus 161 -ev~~e~v~---kYGvi~~g~~~~~~~~~v~~~VEKP~~~-------~APSnlai~GRYil~p~IFd~L~~~~~G~ggEi 229 (291)
T COG1210 161 -EVPPEDVS---KYGVIDPGEPVEKGVYKVKGMVEKPKPE-------EAPSNLAIVGRYVLTPEIFDILEETKPGAGGEI 229 (291)
T ss_pred -ECCHHHCc---ccceEecCccccCCeEEEEEEEECCCCC-------CCCcceeeeeeeecCHHHHHHHhhCCCCCCCEe
Confidence 45434433 455543 2233 677888987541 123478889999999999997766543 357
Q ss_pred cccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHH
Q 022555 247 QLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 247 ~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~ 291 (295)
+.||.+. .++ ...+|.++..++..+|++++..|..|.--+..
T Consensus 230 QLTDai~--~L~-~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l 271 (291)
T COG1210 230 QLTDAIK--KLL-KKEPVLAYVFEGKRYDCGSKLGYIKANVEFAL 271 (291)
T ss_pred eHHHHHH--HHH-hhCcEEEEEecccEEccCCcccHHHHHHHHHh
Confidence 7888763 222 33789999999999999999999888755544
No 72
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.83 E-value=8.5e-19 Score=150.96 Aligned_cols=203 Identities=22% Similarity=0.279 Sum_probs=136.6
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---cCCeEEeC-CCC
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIMT-SES 119 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~~~~v~~~-~~~ 119 (295)
|||||||.|+||+ ||++++++|+|||+|+++++.+.+ +++|+|+++. +.+.+.+.. ++..+... +..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g-~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAG-IDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEE 79 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCC-CCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCC
Confidence 6899999999995 799999999999999999999885 9999999984 455555543 34444222 222
Q ss_pred CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCe
Q 022555 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGY 198 (295)
Q Consensus 120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~ 198 (295)
..|...++..++..+ ..+.+++++||+. + ..++.++++.+.+. ++..++.+.+.. ++..+ .+..|++|+
T Consensus 80 ~~g~~~al~~~~~~~--~~~~~lv~~~D~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~v~~d~~~~ 149 (217)
T cd04181 80 PLGTAGAVRNAEDFL--GDDDFLVVNGDVL-T-DLDLSELLRFHREK-GADATIAVKEVE-----DPSRYGVVELDDDGR 149 (217)
T ss_pred CCccHHHHHHhhhhc--CCCCEEEEECCee-c-CcCHHHHHHHHHhc-CCCEEEEEEEcC-----CCCcceEEEEcCCCc
Confidence 345557788888887 3578999999994 4 34688888877653 223333334432 22233 345677789
Q ss_pred EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC-CCCcccchhhhhhhhhCCceEEEEEecCCcCCCC
Q 022555 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP-TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVD 277 (295)
Q Consensus 199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~-~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idId 277 (295)
+..+.+++.. .....+++|+|+|++++++.+..... .+....+.+ ..++.. .+|.+++.+++|.||+
T Consensus 150 v~~~~ek~~~---------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~--~~l~~~-~~v~~~~~~g~w~dig 217 (217)
T cd04181 150 VTRFVEKPTL---------PESNLANAGIYIFEPEILDYIPEILPRGEDELTDAI--PLLIEE-GKVYGYPVDGYWLDIG 217 (217)
T ss_pred EEEEEECCCC---------CCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHH--HHHHhc-CCEEEEEcCCEEecCC
Confidence 9888887521 11367899999999998865443221 111122222 122333 5799999888999986
No 73
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.82 E-value=4.2e-19 Score=149.81 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCC-CCCCCcHHH
Q 022555 50 VVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTS-ESCRNGTER 126 (295)
Q Consensus 50 i~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~-~~~~g~~~~ 126 (295)
+.+||||||+|+||+ +|+|++++|+|||+|+++++.. .+++|+|+++.+.........++.++... ....|...+
T Consensus 1 ~~~iILAgG~s~Rmg~~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~s 78 (186)
T TIGR02665 1 ISGVILAGGRARRMGGRDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPERYAQAGFGLPVVPDALADFPGPLAG 78 (186)
T ss_pred CeEEEEcCCccccCCCCCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHHHHhhccCCCcEEecCCCCCCCCHHH
Confidence 368999999999996 8999999999999999999974 48999999985543222223456665543 234567788
Q ss_pred HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
++.|+..+ +.+.+++++||+||++++.++++++.+.+
T Consensus 79 i~~al~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 79 ILAGLRWA--GTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred HHHHHHhc--CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 99999887 35789999999999999999999998764
No 74
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.82 E-value=4.4e-19 Score=158.91 Aligned_cols=224 Identities=19% Similarity=0.209 Sum_probs=141.6
Q ss_pred EEEEEcCCCCCCCC-------CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCch---HHHHHHHH--cCCeEEeCC
Q 022555 51 VGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ--FGADVIMTS 117 (295)
Q Consensus 51 ~aiIlAaG~gsRl~-------~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~---~i~~~~~~--~~~~v~~~~ 117 (295)
.+||||||.|+||. ||+|+++.| +|||+|+++++...+++++|+|+++.+ .+.+.+++ .+..++..+
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep 81 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEP 81 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECC
Confidence 48999999999992 799999999 999999999999875589999999853 34444443 234555543
Q ss_pred CCCCCcHHHHHHHHHHccc--cCCEEEEEeCCcccCCHHHHHHHHHHHHh--CCCcEEEEeeeeCCCCCCCCCCceEE-E
Q 022555 118 ESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKC-V 192 (295)
Q Consensus 118 ~~~~g~~~~i~~al~~~~~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~~v~v~~~~~~~~~~~~p~~~~v-~ 192 (295)
. ..+...++..|+..+.. +.+.++++++|+++.+...+.++++.+.+ ..+.++++.+.+..+ ...+++ .
T Consensus 82 ~-~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~-----~t~yGyI~ 155 (274)
T cd02509 82 E-GRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP-----ETGYGYIE 155 (274)
T ss_pred C-CCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC-----CCCeEEEE
Confidence 2 33445567777766641 34689999999998776777777754432 124555555444321 123433 3
Q ss_pred ECCC--C---eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCCCc----------------c-c
Q 022555 193 VDNH--G---YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTPLQ----------------L-E 249 (295)
Q Consensus 193 ~d~~--g---~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~~~----------------~-~ 249 (295)
.+++ | +|..|.|||-. ........+..+++|+|+|+|+.+.|.. +.+..|+-+. . .
T Consensus 156 ~~~~~~~~~~~V~~f~EKP~~-~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
T cd02509 156 AGEKLGGGVYRVKRFVEKPDL-ETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLE 234 (274)
T ss_pred eCCcCCCCceEEeEEEECcCh-HHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhH
Confidence 4544 2 78899998631 1110111122468899999999877653 2222221000 0 0
Q ss_pred chhh-------hhhhhhCCceEEEEEecCCcCCCCCHHH
Q 022555 250 EDLE-------QLKVLENGYKMKVIKVDHEAHGVDAPED 281 (295)
Q Consensus 250 d~~~-------~~~~~~~G~~v~~v~~~~~~idIdtpeD 281 (295)
+.+. +..+++.-.++.+++.+..|-||++.+.
T Consensus 235 ~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 235 EAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 1010 1234555567888888899999998754
No 75
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.82 E-value=1.1e-18 Score=141.85 Aligned_cols=106 Identities=32% Similarity=0.473 Sum_probs=92.9
Q ss_pred EEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555 52 GIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERC 127 (295)
Q Consensus 52 aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~~~~i 127 (295)
+||+|||+|+||+ -|||++++|||||.|+++.+.+ .+++|+|+++ .+.++.++...+++++..+.. |-...+
T Consensus 3 ~iiMAGGrGtRmg~~EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~--GYv~Dl 78 (177)
T COG2266 3 AIIMAGGRGTRMGRPEKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE--GYVEDL 78 (177)
T ss_pred eEEecCCcccccCCCcCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC--ChHHHH
Confidence 8999999999998 4999999999999999999987 4899999986 578888998888998876532 445668
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (295)
..+++.+. .++|++++|.||+.+.+|+.+++.+.
T Consensus 79 ~~al~~l~---~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 79 RFALESLG---TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred HHHHHhcC---CceEEEecccccCCHHHHHHHHHHHh
Confidence 89999984 38999999999999999999999886
No 76
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.82 E-value=8.6e-19 Score=149.52 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=82.3
Q ss_pred CceEEEEEcCCCCCCCC-CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeC-CCCCCCcH
Q 022555 48 SRVVGIIPARFASSRFE-GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMT-SESCRNGT 124 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~-~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~-~~~~~g~~ 124 (295)
+++.+||||||+|+||+ +|++++++| +|||+|+++++... +++|+|+++++.. ..++.++.+ .....++.
T Consensus 7 ~~i~~vILAgG~s~RmG~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~~~~-----~~~~~~v~d~~~~~~gpl 79 (196)
T PRK00560 7 DNIPCVILAGGKSSRMGENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKDKKF-----EFNAPFLLEKESDLFSPL 79 (196)
T ss_pred cCceEEEECCcccccCCCCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECchhc-----ccCCcEEecCCCCCCCcH
Confidence 45889999999999997 899999999 99999999999864 7899999886321 234555554 22234555
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHH
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 160 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li 160 (295)
.++..++... +.+++++++||+||++++++++++
T Consensus 80 ~gi~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 80 FGIINAFLTL--QTPEIFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred HHHHHHHHhc--CCCeEEEEecCcCcCCHHHHHHHH
Confidence 6677777665 368999999999999999999884
No 77
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.81 E-value=1.6e-18 Score=146.11 Aligned_cols=119 Identities=19% Similarity=0.236 Sum_probs=92.0
Q ss_pred EEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcHHH
Q 022555 51 VGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTER 126 (295)
Q Consensus 51 ~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~~~ 126 (295)
.+||||||+|+||+ +|++++++|+|||+|+++++.+.+ +++|+|++++ +.++.++++.+..+ .. ....|...+
T Consensus 2 ~aIILAgG~gsRmg~~~K~Ll~i~GkplI~~vi~~l~~~~-i~~I~Vv~~~~~~~~~~~l~~~~~~~-~~-~~g~G~~~~ 78 (183)
T TIGR00454 2 DALIMAGGKGTRLGGVEKPLIEVCGRCLIDHVLSPLLKSK-VNNIIIATSPHTPKTEEYINSAYKDY-KN-ASGKGYIED 78 (183)
T ss_pred eEEEECCccCccCCCCCceEeEECCEEHHHHHHHHHHhCC-CCEEEEEeCCCHHHHHHHHhhcCcEE-Ee-cCCCCHHHH
Confidence 48999999999996 699999999999999999998774 9999999873 45666665433333 32 233455677
Q ss_pred HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEE
Q 022555 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST 173 (295)
Q Consensus 127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v 173 (295)
+..|++.+. ..++++++.||+||+++++++.+++.+...+....++
T Consensus 79 l~~al~~~~-~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~ 124 (183)
T TIGR00454 79 LNECIGELY-FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAV 124 (183)
T ss_pred HHHHhhccc-CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 888888653 2468999999999999999999999886543333333
No 78
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.81 E-value=1.4e-18 Score=161.99 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=91.9
Q ss_pred CCceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555 47 RSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE 125 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~ 125 (295)
++++.+||||||+|+||| +|+|++++|+|||+|+++++.. .+++|+|+++++....+ ...++.++.++....|+..
T Consensus 172 ~~~i~~iILAGG~SsRmG~~K~ll~~~Gk~ll~~~l~~l~~--~~~~vvV~~~~~~~~~~-~~~~v~~i~d~~~~~Gpl~ 248 (369)
T PRK14490 172 EVPLSGLVLAGGRSSRMGSDKALLSYHESNQLVHTAALLRP--HCQEVFISCRAEQAEQY-RSFGIPLITDSYLDIGPLG 248 (369)
T ss_pred cCCceEEEEcCCccccCCCCcEEEEECCccHHHHHHHHHHh--hCCEEEEEeCCchhhHH-hhcCCcEEeCCCCCCCcHH
Confidence 466789999999999997 8999999999999999999975 37889998876543333 3457777766544567788
Q ss_pred HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHH
Q 022555 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (295)
Q Consensus 126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~ 163 (295)
++..|++... .+.++++.||+||++++.++.+++..
T Consensus 249 gi~~al~~~~--~~~~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 249 GLLSAQRHHP--DAAWLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred HHHHHHHhCC--CCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence 8999988763 56899999999999999999998864
No 79
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.80 E-value=8.4e-19 Score=147.30 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCch--HHHHHHHHcCCeEEeCCCCCCCcHHH
Q 022555 50 VVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE--KIAECCQQFGADVIMTSESCRNGTER 126 (295)
Q Consensus 50 i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~--~i~~~~~~~~~~v~~~~~~~~g~~~~ 126 (295)
+.+||||||+|+||+ +|++++++|+|||+|+++++.+. .+++|+|+++++ .+...+..+++.++.++....|...+
T Consensus 1 ~~~vIlAgG~s~R~g~~K~l~~~~g~~li~~~i~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 79 (186)
T cd04182 1 IAAIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAALAA-GLSRVIVVLGAEADAVRAALAGLPVVVVINPDWEEGMSSS 79 (186)
T ss_pred CeEEEECCCCCCCCCCCceeCeeCCeeHHHHHHHHHHhC-CCCcEEEECCCcHHHHHHHhcCCCeEEEeCCChhhCHHHH
Confidence 358999999999998 89999999999999999999987 489999999754 33333334456555554444566778
Q ss_pred HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
+..|++.+....|++++++||+||++++.++++++.+.++
T Consensus 80 i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 119 (186)
T cd04182 80 LAAGLEALPADADAVLILLADQPLVTAETLRALIDAFRED 119 (186)
T ss_pred HHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhC
Confidence 9999998753368999999999999999999999988643
No 80
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.80 E-value=2.1e-18 Score=146.06 Aligned_cols=115 Identities=22% Similarity=0.382 Sum_probs=93.0
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHH
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER 126 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~ 126 (295)
++++.+||||||+|+||.+|.+++++|+||++|++++++.. ++.++|+.+.+. .. ...++++++.......|++.+
T Consensus 2 ~~~~~~vILAGG~srRm~dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~~-~~-~~~~g~~vv~D~~~~~GPL~G 77 (192)
T COG0746 2 MTPMTGVILAGGKSRRMRDKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRNQ-GR-YAEFGLPVVPDELPGFGPLAG 77 (192)
T ss_pred CCCceEEEecCCccccccccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCch-hh-hhccCCceeecCCCCCCCHHH
Confidence 35678999999999999889999999999999999999864 555555555432 22 334578877665444488899
Q ss_pred HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 022555 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167 (295)
Q Consensus 127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~ 167 (295)
++.|+.... .++++++.||+||++++.++.+++.+.+.+
T Consensus 78 i~~al~~~~--~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 78 ILAALRHFG--TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred HHHHHHhCC--CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 999999984 689999999999999999999999887654
No 81
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.78 E-value=1.1e-17 Score=160.32 Aligned_cols=228 Identities=15% Similarity=0.161 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCCCCC-------CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCch---HHHHHHHHcCC---eEEe
Q 022555 50 VVGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQFGA---DVIM 115 (295)
Q Consensus 50 i~aiIlAaG~gsRl~-------~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~---~i~~~~~~~~~---~v~~ 115 (295)
+.+||||||.|+||. ||+|+++.| +|||+|+++++... .+++++|+++.+ .+.+.++.++. .++.
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~-~~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~ 79 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL-PCSSPLVICNEEHRFIVAEQLREIGKLASNIIL 79 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC-CCcCcEEecCHHHHHHHHHHHHHcCCCcceEEe
Confidence 358999999999994 799999976 89999999999887 488999999853 33445555543 2444
Q ss_pred CCCCCCCcHHHHHHHHHHcc---ccCCEEEEEeCCcccCCHHHHHHHHHHHH---hCCCcEEEEeeeeCCCCCCCCCCce
Q 022555 116 TSESCRNGTERCNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDGVVKALQ---AAPDAVFSTAVTSLKPEDAFDPNRV 189 (295)
Q Consensus 116 ~~~~~~g~~~~i~~al~~~~---~~~d~vlv~~~D~Pli~~~~i~~li~~~~---~~~d~~v~v~~~~~~~~~~~~p~~~ 189 (295)
.+. ..+...++..|...+. .+.+.++++++|+++.++..+.++++.+. ++ +.++++.+.+.. ++..|
T Consensus 80 Ep~-~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~-~~lvtlgi~p~~-----p~t~Y 152 (468)
T TIGR01479 80 EPV-GRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAE-GKLVTFGIVPTH-----PETGY 152 (468)
T ss_pred ccc-ccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhc-CCEEEEEecCCC-----CCCCc
Confidence 332 2233334443433331 12456999999999888788888887652 23 455555443321 11234
Q ss_pred EEE-ECC------CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCC----------------
Q 022555 190 KCV-VDN------HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTP---------------- 245 (295)
Q Consensus 190 ~v~-~d~------~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~---------------- 245 (295)
+.+ .++ .++|..|.|||-. ........+..+++|+|+|+|+.+.|.. +.+..|+-
T Consensus 153 GyI~~~~~~~~~~~~~V~~f~EKP~~-~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~ 231 (468)
T TIGR01479 153 GYIRRGEPLAGEDVYQVQRFVEKPDL-ATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLD 231 (468)
T ss_pred eEEEeCCccCCCCceEEeEEEECCCh-HHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcc
Confidence 333 442 2578899998632 1100001111368999999999766553 22222110
Q ss_pred -Ccccchh-h-------hhhhhhCCceEEEEEecCCcCCCCCHHHHHHHH
Q 022555 246 -LQLEEDL-E-------QLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIE 286 (295)
Q Consensus 246 -~~~~d~~-~-------~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae 286 (295)
..+.+.. . +..+++...++.+++.+..|-|++++++|..+.
T Consensus 232 ~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 232 FIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred cceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 0000000 0 113456677899999999999999999997753
No 82
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.77 E-value=1.6e-17 Score=152.57 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=89.7
Q ss_pred ceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555 49 RVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i 127 (295)
++.+||||||+|+||| +|.|++++|+||++|+++.+.. .+++|+|+++++..... ....+.++.+.....|+..++
T Consensus 160 ~i~~IILAGGkSsRMG~dKaLL~~~GkpLl~~~ie~l~~--~~~~ViVv~~~~~~~~~-~~~~v~~I~D~~~~~GPlagI 236 (346)
T PRK14500 160 PLYGLVLTGGKSRRMGKDKALLNYQGQPHAQYLYDLLAK--YCEQVFLSARPSQWQGT-PLENLPTLPDRGESVGPISGI 236 (346)
T ss_pred CceEEEEeccccccCCCCcccceeCCccHHHHHHHHHHh--hCCEEEEEeCchHhhhc-cccCCeEEeCCCCCCChHHHH
Confidence 6789999999999997 8999999999999999999875 37899999876532211 112455555555566889999
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (295)
+.|+.... .+.++++.||+||++++.+..+++.+.
T Consensus 237 ~aaL~~~~--~~~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 237 LTALQSYP--GVNWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred HHHHHhCC--CCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence 99999864 356799999999999999999998764
No 83
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2.6e-17 Score=149.90 Aligned_cols=227 Identities=18% Similarity=0.171 Sum_probs=156.6
Q ss_pred CceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCchH--HHHHHHH----------
Q 022555 48 SRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDDEK--IAECCQQ---------- 108 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~~~--i~~~~~~---------- 108 (295)
.++.|+|||||.|+||. .||-+||+|| -||..+|.++..+ ++.+|.|.|+... +.+.+..
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNS-Gi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~ 82 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNS-GIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKN 82 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEccccccc-CCCeEEEEeccchhHHHHHhhCCCcccccccc
Confidence 35779999999999996 5999999998 5999999999998 5999999998533 2222211
Q ss_pred cCCeEEeC-----C-CCCCCcHHHHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCC
Q 022555 109 FGADVIMT-----S-ESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE 181 (295)
Q Consensus 109 ~~~~v~~~-----~-~~~~g~~~~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~ 181 (295)
.++.++.. . .+.+|+..++++-+..+. .+.+.++++.||+-+ .-+++++++.|.+. ++.+++.+.++..+
T Consensus 83 ~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIY--kmDy~~ml~~H~~~-gadiTv~~~~Vp~~ 159 (393)
T COG0448 83 GGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIY--KMDYSDMLDFHIES-GADVTVAVKEVPRE 159 (393)
T ss_pred CcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEE--ecCHHHHHHHHHHc-CCCEEEEEEECChH
Confidence 12222221 1 134455566766555543 357899999999844 67899999999874 34556666777766
Q ss_pred CCCCCCceEEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCC---CCCcccchhhhhhh
Q 022555 182 DAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHP---TPLQLEEDLEQLKV 257 (295)
Q Consensus 182 ~~~~p~~~~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~---~~~~~~d~~~~~~~ 257 (295)
++...+- +..|++|+++.|.|||.. . .+.-.....|+|+|+++.|..+.+ ... +...+..++ ...+
T Consensus 160 eas~fGi--m~~D~~~~i~~F~eKp~~--~-----~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~Dfgkdi-Ip~~ 229 (393)
T COG0448 160 EASRFGV--MNVDENGRIIEFVEKPAD--G-----PPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDI-IPKL 229 (393)
T ss_pred hhhhcCc--eEECCCCCEEeeeeccCc--C-----CcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHH-HHHH
Confidence 5544332 247999999999998631 0 111125789999999999987543 222 112222222 1123
Q ss_pred hhCCceEEEEEecCCcCCCCCHHHHHHHHHHH
Q 022555 258 LENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 289 (295)
Q Consensus 258 ~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll 289 (295)
+..|. +.+++.+++|-||+|.+.|..|+--|
T Consensus 230 ~~~~~-v~AY~f~gYw~dVgTi~syy~aNmdL 260 (393)
T COG0448 230 LERGK-VYAYEFSGYWRDVGTIDSYYEANMDL 260 (393)
T ss_pred HhcCC-EEEEeccchhhhcccHHHHHHhhHHh
Confidence 45666 99999999999999999999988544
No 84
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.74 E-value=9.6e-17 Score=138.93 Aligned_cols=178 Identities=17% Similarity=0.185 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc---C-----CeEE
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF---G-----ADVI 114 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~---~-----~~v~ 114 (295)
.|||||||.|+||. ||+|+|++|+|||+|+++.+.++ ++++|+|+++ .+.+.+++.+. + ..+.
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~ 80 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI 80 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence 48999999999995 79999999999999999999997 5999999997 46677666542 1 2232
Q ss_pred -eCCCCCCCcHHHHHH--HHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC----CCcEEEEeeeeCCCCCC--CC
Q 022555 115 -MTSESCRNGTERCNE--ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA----PDAVFSTAVTSLKPEDA--FD 185 (295)
Q Consensus 115 -~~~~~~~g~~~~i~~--al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~----~d~~v~v~~~~~~~~~~--~~ 185 (295)
...+...+....+.. +...+ .+.|++++||. +....+..+++.|++. .++.+++...++...+. ..
T Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~---~~~flv~~gD~--i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~ 155 (217)
T cd04197 81 IIMSEDCRSLGDALRDLDAKGLI---RGDFILVSGDV--VSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRT 155 (217)
T ss_pred EEeCCCcCccchHHHHHhhcccc---CCCEEEEeCCe--eeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccC
Confidence 222222222222221 12222 35699999998 3456799999988763 35555555445432110 00
Q ss_pred CCceEEEECCC-CeEEEeecCCCCCCCCCCCCCC-----------CCceEEEeEEEecHHH
Q 022555 186 PNRVKCVVDNH-GYAIYFSRGLIPYNKSGKVNPQ-----------FPYLLHLGIQSYDSNF 234 (295)
Q Consensus 186 p~~~~v~~d~~-g~v~~~~~~~i~~~r~~~~~~~-----------~p~~~~~Giyif~~~~ 234 (295)
.....+..|++ |+++.|.+++.....+...... ..+..++|+|+|++.+
T Consensus 156 ~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~v 216 (217)
T cd04197 156 GEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDV 216 (217)
T ss_pred CCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCC
Confidence 01222345655 8999999986431211100000 1346678888888765
No 85
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.74 E-value=1.7e-16 Score=147.72 Aligned_cols=115 Identities=21% Similarity=0.306 Sum_probs=87.4
Q ss_pred CCceEEEEEcCCCCCCC-C-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc-CCeEEeCCCC-CCC
Q 022555 47 RSRVVGIIPARFASSRF-E-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSES-CRN 122 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl-~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~-~~~v~~~~~~-~~g 122 (295)
|+++.+||||||+|+|| + +|+|++++|+|||+|+++++.. .+++|+|+++.+. ..+.... ++.++..... ..|
T Consensus 3 ~~~i~~VILAgG~s~Rmgg~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~-~~~~~~~~~~~~i~d~~~g~~G 79 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMNGRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDP-ARYQDLFPGLPVYPDILPGFQG 79 (366)
T ss_pred CCCceEEEEcCCcccCCCCCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCH-HHHHhhccCCcEEecCCCCCCC
Confidence 44678999999999999 4 8999999999999999999974 4889998665332 1222211 3444433222 245
Q ss_pred cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
...+++.|++.+ +.+.+++++||+||+++++++++++.+..+
T Consensus 80 ~~~si~~gl~~~--~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~ 121 (366)
T PRK14489 80 PLSGILAGLEHA--DSEYLFVVACDTPFLPENLVKRLSKALAIE 121 (366)
T ss_pred hHHHHHHHHHhc--CCCcEEEeeCCcCCCCHHHHHHHHHHhhcc
Confidence 667899999987 357899999999999999999999987543
No 86
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.6e-17 Score=141.84 Aligned_cols=230 Identities=16% Similarity=0.191 Sum_probs=154.3
Q ss_pred CceEEEEEcCC--CCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHH----HHcCCeE
Q 022555 48 SRVVGIIPARF--ASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECC----QQFGADV 113 (295)
Q Consensus 48 ~~i~aiIlAaG--~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~----~~~~~~v 113 (295)
|++.|+||.|| +|+||. ||||.|++|+|||+|-++++++.+++.+|+++-= ++.+.++. +++.+.+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv 80 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV 80 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccch
Confidence 67889999999 899995 7999999999999999999999999999999874 33444433 4566655
Q ss_pred EeCCCCCCCcH-HHHHHHHHHc-cccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE
Q 022555 114 IMTSESCRNGT-ERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC 191 (295)
Q Consensus 114 ~~~~~~~~g~~-~~i~~al~~~-~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v 191 (295)
-+-.+..+-|+ .++++--+++ ...++.|++++||. ...--+++|+++++.. ...++.+++++..+... .++.
T Consensus 81 rYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDV--CcsfPl~~ml~ahr~~-g~~~tll~tkvs~e~as---nfG~ 154 (407)
T KOG1460|consen 81 RYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADV--CCSFPLQDMLEAHRRY-GGIGTLLVTKVSREQAS---NFGC 154 (407)
T ss_pred hhhccCCCCCcccceeehhhHHhcCCCceEEEEecce--ecCCcHHHHHHHHhhc-CCceEEEEEEecHhHhh---ccCe
Confidence 33222322232 3455555444 23578999999997 3344589999999764 45556666666654433 3333
Q ss_pred E-EC-CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC---------CCCc----c-cchh--h
Q 022555 192 V-VD-NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---------TPLQ----L-EEDL--E 253 (295)
Q Consensus 192 ~-~d-~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~---------~~~~----~-~d~~--~ 253 (295)
+ .| ..|+++.+.+||..+ .++.+|.|+|+|++++|+...+... +++. . .|.+ +
T Consensus 155 lV~dP~t~evlHYveKPsTf---------vSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLe 225 (407)
T KOG1460|consen 155 LVEDPSTGEVLHYVEKPSTF---------VSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLE 225 (407)
T ss_pred eeecCCcCceEEeecCcchh---------hhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEee
Confidence 3 34 358999888886422 2467899999999999875322110 0110 0 1111 1
Q ss_pred h--hhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555 254 Q--LKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 254 ~--~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r 292 (295)
+ +.-++-.+.++.++..+.|--|.|+..-..|+.++-++
T Consensus 226 qDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~ 266 (407)
T KOG1460|consen 226 QDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQ 266 (407)
T ss_pred chhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHH
Confidence 1 12223345688888888999999999988888887764
No 87
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.71 E-value=1.6e-16 Score=135.85 Aligned_cols=172 Identities=14% Similarity=0.135 Sum_probs=117.3
Q ss_pred EEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---cC-------Ce
Q 022555 52 GIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FG-------AD 112 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~~-------~~ 112 (295)
|||||||.|+||. ||+|+|++|+ |||+|+++.+.++ ++++|+|+++. +.+.++..+ ++ +.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLF 79 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEE
Confidence 5899999999993 7999999998 9999999999987 59999999984 556655542 11 23
Q ss_pred EEeC-----CCCCCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCC
Q 022555 113 VIMT-----SESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP 186 (295)
Q Consensus 113 v~~~-----~~~~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p 186 (295)
++.. ++...|...++..|...+.. +.+.|++++||+ +...++.++++.+.++. +.+++..
T Consensus 80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~--v~~~~~~~~l~~~~~~~-~~~t~~~----------- 145 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDH--IYNMDYREMLDFHIESG-ADITVVY----------- 145 (200)
T ss_pred EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCE--EEecCHHHHHHHHHHcC-CCEEEEE-----------
Confidence 3321 12233555678888888742 247899999999 45678999999887642 3222210
Q ss_pred CceEEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCC--CCCcccchhhhhhhhhCCce
Q 022555 187 NRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHP--TPLQLEEDLEQLKVLENGYK 263 (295)
Q Consensus 187 ~~~~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~--~~~~~~d~~~~~~~~~~G~~ 263 (295)
. .++|+|+|+++++..+.+ ... .+...+|.+. .++.. .+
T Consensus 146 ------~-----------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~--~l~~~-~~ 187 (200)
T cd02508 146 ------K-----------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIP--AMLKK-LK 187 (200)
T ss_pred ------h-----------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHH--HHhcc-Cc
Confidence 0 456779999998865432 211 1122234331 23334 58
Q ss_pred EEEEEecCCcCCC
Q 022555 264 MKVIKVDHEAHGV 276 (295)
Q Consensus 264 v~~v~~~~~~idI 276 (295)
+.+++.+++|+||
T Consensus 188 v~~~~~~g~w~di 200 (200)
T cd02508 188 IYAYEFNGYWADI 200 (200)
T ss_pred EEEEEeCCeEecC
Confidence 9999988899986
No 88
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=1.5e-15 Score=127.59 Aligned_cols=116 Identities=34% Similarity=0.556 Sum_probs=99.0
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECC----chHHHHHHHHcCCeEEeCCCCCCC
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD----DEKIAECCQQFGADVIMTSESCRN 122 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~----~~~i~~~~~~~~~~v~~~~~~~~g 122 (295)
|++|.+||-|+=+|||+++|.|+|++|+|||+++++++++++.+++++|.|+ ++.++.++..+|+.++... ...
T Consensus 1 ~~~I~~IiQARmgStRLpgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrGs--~~d 78 (241)
T COG1861 1 MSMILVIIQARMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVFRGS--EED 78 (241)
T ss_pred CCcEEEEeeecccCccCCcchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCeeEecCC--HHH
Confidence 5789999999999999999999999999999999999999999999999997 3566778888898876532 123
Q ss_pred cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
-..+...+++.. +++.++-+.||+||++++.++..++.+.+.
T Consensus 79 VL~Rf~~a~~a~--~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~ 120 (241)
T COG1861 79 VLQRFIIAIKAY--SADVVVRVTGDNPFLDPELVDAAVDRHLEK 120 (241)
T ss_pred HHHHHHHHHHhc--CCCeEEEeeCCCCCCCHHHHHHHHHHHHhc
Confidence 345677888877 467999999999999999999999988764
No 89
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.62 E-value=2.5e-14 Score=136.45 Aligned_cols=232 Identities=15% Similarity=0.172 Sum_probs=139.0
Q ss_pred CCceEEEEEcCCCCCCC-C------CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcC---Ce
Q 022555 47 RSRVVGIIPARFASSRF-E------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFG---AD 112 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl-~------~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~---~~ 112 (295)
.|++.+||||||.|+|| | ||+|+++.| +|||+++++++...+ +.+.+|+|+... +.+.+...+ .+
T Consensus 3 ~~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~-~~~~iivt~~~~~~~v~~ql~~~~~~~~~ 81 (478)
T PRK15460 3 QSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVE-CESPVVICNEQHRFIVAEQLRQLNKLTEN 81 (478)
T ss_pred CCceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCC-CCCcEEEeCHHHHHHHHHHHHhcCCcccc
Confidence 45678999999999999 4 799999955 799999999998764 566667787533 333333333 24
Q ss_pred EEeCCCCCCCcHHHHHHHHHHcc-c--c-CCEEEEEeCCcccCCHHHHHHHHHHHHh--CCCcEEEEeeeeCCCCCCCCC
Q 022555 113 VIMTSESCRNGTERCNEALQKLE-K--K-YDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDP 186 (295)
Q Consensus 113 v~~~~~~~~g~~~~i~~al~~~~-~--~-~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~~v~v~~~~~~~~~~~~p 186 (295)
++..|. ..+....+..|...+. . + .+.++++++|+..-+.+.+.+.++...+ ..+.++++-+.+..++. .+
T Consensus 82 ii~EP~-~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeT--gy 158 (478)
T PRK15460 82 IILEPA-GRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPET--GY 158 (478)
T ss_pred EEecCC-CCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCC--CC
Confidence 555443 2233334433333332 1 1 3578899999976666667666655431 22566666555543322 22
Q ss_pred CceEEEECCC-------C--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCC------------
Q 022555 187 NRVKCVVDNH-------G--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPT------------ 244 (295)
Q Consensus 187 ~~~~v~~d~~-------g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~------------ 244 (295)
++++ .++. + .|..|.|||-. .....+.++--+++|+|+|+|+.+.+.. +.+..|.
T Consensus 159 GYI~--~g~~~~~~~~~~~~~V~~F~EKPd~-~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~ 235 (478)
T PRK15460 159 GYIR--RGEVSAGEQDTVAFEVAQFVEKPNL-ETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAV 235 (478)
T ss_pred CeEE--eCCccccccccCceEeeEEEeCCCH-HHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhc
Confidence 3332 2221 2 57899999621 1111222333578999999999988653 4333221
Q ss_pred --C---Ccc-cchhh-------hhhhhhCCceEEEEEecCCcCCCCCHHHHHHH
Q 022555 245 --P---LQL-EEDLE-------QLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 285 (295)
Q Consensus 245 --~---~~~-~d~~~-------~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~a 285 (295)
+ ... .+.+. +..+++.=.++.+++.+..|-|+++...+...
T Consensus 236 ~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 236 DPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred cCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 0 000 00010 12344433458888998999999999988764
No 90
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=2.5e-14 Score=126.91 Aligned_cols=229 Identities=15% Similarity=0.182 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCCC-C------Ccccccc-CCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHH---HHcCCe----EE
Q 022555 50 VVGIIPARFASSRF-E------GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDEKIAECC---QQFGAD----VI 114 (295)
Q Consensus 50 i~aiIlAaG~gsRl-~------~K~l~~i-~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~---~~~~~~----v~ 114 (295)
+..+|||||+|||| | |||++.+ ++++|++.|+++++.....++++|+|+.+...... ++.+.. ++
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~il 81 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGII 81 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceE
Confidence 46899999999999 6 8999999 45999999999999855688999999965443322 221222 44
Q ss_pred eCCCCCCCcHHHHHHHHHHc-cc-cCCEEEEEeCCcccCCHHHHHHHHHHHHh--CCCcEEEEeeeeCCCCCCCCCCceE
Q 022555 115 MTSESCRNGTERCNEALQKL-EK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVK 190 (295)
Q Consensus 115 ~~~~~~~g~~~~i~~al~~~-~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~~v~v~~~~~~~~~~~~p~~~~ 190 (295)
..|. -.+....+..|...+ .. ....++++++|+-.-+.+.+.+.++...+ ....++++-+.|..++. .+++++
T Consensus 82 lEP~-gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeT--GYGYIe 158 (333)
T COG0836 82 LEPE-GRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPET--GYGYIE 158 (333)
T ss_pred eccC-CCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCcc--Ccceee
Confidence 4432 223333444333332 22 23479999999977777677777655532 12356666555543321 222332
Q ss_pred EEECC-----CC-eEEEeecCCCCCCCCC--CCCCCCCceEEEeEEEecHHHHh-hcccCCCCCC---------------
Q 022555 191 CVVDN-----HG-YAIYFSRGLIPYNKSG--KVNPQFPYLLHLGIQSYDSNFLK-IYPGLHPTPL--------------- 246 (295)
Q Consensus 191 v~~d~-----~g-~v~~~~~~~i~~~r~~--~~~~~~p~~~~~Giyif~~~~l~-~~~~~~~~~~--------------- 246 (295)
..+ ++ .|.+|.||| ++++ ..-..--+++|.|+++|+...+. ++.+..|+-+
T Consensus 159 --~G~~~~~~~~~~V~~FvEKP---d~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~ 233 (333)
T COG0836 159 --TGESIAENGVYKVDRFVEKP---DLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENS 233 (333)
T ss_pred --cCcccccCCceEeeeeeeCC---CHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccch
Confidence 211 22 467899986 3221 11122248999999999987654 3444333210
Q ss_pred -cc-cchhh-------hhhhhhCCceEEEEEecCCcCCCCCHHHHHHHH
Q 022555 247 -QL-EEDLE-------QLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIE 286 (295)
Q Consensus 247 -~~-~d~~~-------~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae 286 (295)
+. .+.+. +..+++.-.++.+++.+..|=|+++..-+....
T Consensus 234 ~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 234 VRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred hcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 00 00010 224555556889999999999999998876543
No 91
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.52 E-value=5e-13 Score=115.45 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=88.2
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHHHc------CCeEEe
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQF------GADVIM 115 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~~~------~~~v~~ 115 (295)
.|||||||.|+||. ||+|+|++|+|||+|+++.+.+. ++++|+|+++. +.++++.+++ +..++.
T Consensus 2 ~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 2 QAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred EEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHC-CCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 58999999999994 79999999999999999999987 59999999984 3455555543 122322
Q ss_pred -CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeee
Q 022555 116 -TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS 177 (295)
Q Consensus 116 -~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~ 177 (295)
.+....|...+++.+...+ .+.|++++||. +....+..+++.+++. ++.+++...+
T Consensus 81 ~~~~~~~gt~~al~~~~~~i---~~d~lv~~~D~--i~~~~l~~~l~~h~~~-~~~~t~~~~~ 137 (214)
T cd04198 81 IVLDEDMGTADSLRHIRKKI---KKDFLVLSCDL--ITDLPLIELVDLHRSH-DASLTVLLYP 137 (214)
T ss_pred ecCCCCcChHHHHHHHHhhc---CCCEEEEeCcc--ccccCHHHHHHHHhcc-CCcEEEEEec
Confidence 2233334456777787776 24599999994 6778899999988765 3444544443
No 92
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.48 E-value=7.8e-13 Score=114.45 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-c--------CCeE
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--------GADV 113 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~--------~~~v 113 (295)
.|||||||.|+||. ||+|+|++|+|||+|+++.+.+. ++++|+|+++. +.+.+...+ + ++.+
T Consensus 2 ~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 2 QAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred eEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 48999999999994 79999999999999999999987 59999999974 333343332 1 1223
Q ss_pred EeCCC-CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHH
Q 022555 114 IMTSE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 162 (295)
Q Consensus 114 ~~~~~-~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~ 162 (295)
+...+ ...|...+++.+...+. +.|+++.||. +....+..++++
T Consensus 81 ~~~~~~~~~Gta~~l~~~~~~i~---~dflv~~gD~--i~~~~l~~~l~~ 125 (216)
T cd02507 81 ITSDLCESAGDALRLRDIRGLIR---SDFLLLSCDL--VSNIPLSELLEE 125 (216)
T ss_pred EEccCCCCCccHHHHHHHhhcCC---CCEEEEeCCE--eecCCHHHHHHH
Confidence 33322 23344556777777762 4599999997 456678888864
No 93
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=2.7e-12 Score=105.71 Aligned_cols=156 Identities=20% Similarity=0.227 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCCCCC-C
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESC-R 121 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~-~ 121 (295)
.|||||||.||||. ||+|+.+.|+|||++.++.|++. ++++|+||++ .+..+-+-.++++++++++... .
T Consensus 2 nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~-gI~dI~IVvGYlkE~FeYLkdKy~vtLvyN~kY~~y 80 (231)
T COG4750 2 NAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREA-GIDDITIVVGYLKEQFEYLKDKYDVTLVYNPKYREY 80 (231)
T ss_pred ceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHC-CCceEEEEeeehHHHHHHHHHhcCeEEEeCchHHhh
Confidence 49999999999994 79999999999999999999998 5999999999 4555555567899999987643 2
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~ 201 (295)
+...+++.|...+. ..-++++|..|. ...+ .....+ ..-+++-....+ +-+..+.+.+|.|..
T Consensus 81 Nn~ySlyla~d~l~----ntYiidsDnyl~-kNif----~~~~~~-S~Yfav~~~~~t-------nEw~l~~~~~~ki~~ 143 (231)
T COG4750 81 NNIYSLYLARDFLN----NTYIIDSDNYLT-KNIF----LTKESH-SKYFAVYRSGKT-------NEWLLIYNSDGKITR 143 (231)
T ss_pred hhHHHHHHHHHHhc----ccEEeccchHhh-hhhh----hcCccc-ceEEEEEecCCC-------ceeEEEEcCCCcEEE
Confidence 44568899998884 246779998543 2221 111111 112233211111 224345677888875
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHh
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK 236 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~ 236 (295)
+.-.. + ....-.|+-.|+..+-.
T Consensus 144 v~Igg----~--------~~~imsG~sff~~~~~~ 166 (231)
T COG4750 144 VDIGG----L--------NGYIMSGISFFDAQFSN 166 (231)
T ss_pred EEecC----c--------ccceEeeeeeecchhHH
Confidence 43221 1 24567788888876543
No 94
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.41 E-value=5.3e-12 Score=105.92 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=72.5
Q ss_pred CccccccCC--cchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHc-cccCCEE
Q 022555 65 GKPLVNILG--KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIV 141 (295)
Q Consensus 65 ~K~l~~i~g--kpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~-~~~~d~v 141 (295)
+|.+++++| +|||+|+++.+.. .+++|+|+++.++ .+ ...++.++.+.....|++.++..|+... ....+++
T Consensus 4 dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~~--~~-~~~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~ 78 (178)
T PRK00576 4 DKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPGQ--PL-PELPAPVLRDELRGLGPLPATGRGLRAAAEAGARLA 78 (178)
T ss_pred CCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCCc--cc-ccCCCCEeccCCCCCCcHHHHHHHHHHHHhcCCCEE
Confidence 799999999 9999999998763 4899999997542 11 2345666544333446677777777654 2246899
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHh
Q 022555 142 VNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 142 lv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
+++.||+|++++++++++++.+.+
T Consensus 79 lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 79 FVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhhc
Confidence 999999999999999999987654
No 95
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=99.30 E-value=1.5e-10 Score=98.40 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=72.6
Q ss_pred cchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCH
Q 022555 74 KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 153 (295)
Q Consensus 74 kpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~ 153 (295)
+|||+|+++.+.+.+ +++++|+++++++..++..+++.++.++. .|..+++.+|++.+..+.+.++++.||+|++++
T Consensus 30 ~~ll~~~l~~l~~~~-~~~vvvv~~~~~~~~~~~~~~v~~i~~~~--~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~ 106 (195)
T TIGR03552 30 LAMLRDVITALRGAG-AGAVLVVSPDPALLEAARNLGAPVLRDPG--PGLNNALNAALAEAREPGGAVLILMADLPLLTP 106 (195)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEECCCHHHHHHHHhcCCEEEecCC--CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH
Confidence 799999999999874 68899999887777776667888766543 366678999998875345689999999999999
Q ss_pred HHHHHHHHHHHh
Q 022555 154 EIIDGVVKALQA 165 (295)
Q Consensus 154 ~~i~~li~~~~~ 165 (295)
++++++++.+.+
T Consensus 107 ~~i~~l~~~~~~ 118 (195)
T TIGR03552 107 RELKRLLAAATE 118 (195)
T ss_pred HHHHHHHHhccc
Confidence 999999998753
No 96
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=9e-11 Score=106.16 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=83.2
Q ss_pred CCCCceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHH-HcCC---
Q 022555 45 NFRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQ-QFGA--- 111 (295)
Q Consensus 45 ~~~~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~-~~~~--- 111 (295)
..|+...+||+|||.|+||+ ||+|+|++++|||.|.++.|.++ ++.+|+|++..++ ++..+. .+..
T Consensus 5 s~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~-gfteiiVv~~e~e~~~i~~al~~~~~l~~~ 83 (433)
T KOG1462|consen 5 SPMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQA-GFTEIIVVVNEDEKLDIESALGSNIDLKKR 83 (433)
T ss_pred cchHHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhc-CCeEEEEEecHHHHHHHHHHHhcCCccccc
Confidence 45667889999999999998 89999999999999999999998 5999999998643 333332 1211
Q ss_pred --eEEeC--CCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 112 --DVIMT--SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 112 --~v~~~--~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
.+.+. ..+.-|...++..--..+. .+.|+++.|| |++.-.+..+++.|+..
T Consensus 84 ~~~v~ip~~~~~d~gtadsLr~Iy~kik--S~DflvlsCD--~Vtdv~l~~lvd~FR~~ 138 (433)
T KOG1462|consen 84 PDYVEIPTDDNSDFGTADSLRYIYSKIK--SEDFLVLSCD--FVTDVPLQPLVDKFRAT 138 (433)
T ss_pred ccEEEeecccccccCCHHHHhhhhhhhc--cCCEEEEecc--cccCCCcHHHHHHHhcc
Confidence 11111 0112233344444444442 3469999999 58888899999999864
No 97
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.7e-06 Score=83.22 Aligned_cols=243 Identities=18% Similarity=0.222 Sum_probs=152.4
Q ss_pred eeCCCCCCC--CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH
Q 022555 39 YLGRSKNFR--SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ 108 (295)
Q Consensus 39 ~~~~~~~~~--~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~ 108 (295)
+..+.+..+ .++.||++|=-.-+||. |+.|+|+.+.|||+|+++.|.++ ++.+|+|.+. ..++.+++++
T Consensus 12 ~~~~~~~~~~~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~a-gV~eVfvfc~~~~~qi~e~i~~ 90 (673)
T KOG1461|consen 12 GETGKEENFREHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERA-GVEEVFVFCSAHAAQIIEYIEK 90 (673)
T ss_pred ccCcccccccccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhc-CceEEEEEecccHHHHHHHHhh
Confidence 344444443 56889999999999994 79999999999999999999988 5999999996 5677777754
Q ss_pred c------CCeEEeCCCCCCCcHHHHHHHHHHccc---cCCEEEEEeCCcccCCHHHHHHHHHHHH----hCCCcEEEEee
Q 022555 109 F------GADVIMTSESCRNGTERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKALQ----AAPDAVFSTAV 175 (295)
Q Consensus 109 ~------~~~v~~~~~~~~g~~~~i~~al~~~~~---~~d~vlv~~~D~Pli~~~~i~~li~~~~----~~~d~~v~v~~ 175 (295)
. ...+ ... ..+...++..+++.+.+ ..+.|+++.+|. ++...+.++++.|+ ++.+++++...
T Consensus 91 sew~~~~~~~v-~ti--~s~~~~S~GDamR~id~k~litgDFiLVsgd~--vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~ 165 (673)
T KOG1461|consen 91 SEWYLPMSFIV-VTI--CSGESRSVGDAMRDIDEKQLITGDFILVSGDT--VSNMPLRNVLEEHRKRRKEDKDAIMTMVF 165 (673)
T ss_pred ccccccccceE-EEE--cCCCcCcHHHHHHHHHhcceeecceEEEeCCe--eecCchHHHHHHHHHHhhhCccceEEEEE
Confidence 1 1111 111 11233456677777642 246799999997 56678999999994 45678887765
Q ss_pred eeCCCCCCCCCCceEEEEC-CCCeEEEeecCC-----CCCCCCCCCCCCC----CceEEEeEEEecHHHHhhcccCCCCC
Q 022555 176 TSLKPEDAFDPNRVKCVVD-NHGYAIYFSRGL-----IPYNKSGKVNPQF----PYLLHLGIQSYDSNFLKIYPGLHPTP 245 (295)
Q Consensus 176 ~~~~~~~~~~p~~~~v~~d-~~g~v~~~~~~~-----i~~~r~~~~~~~~----p~~~~~Giyif~~~~l~~~~~~~~~~ 245 (295)
.+.. ...++..+-+.+| .+.+++++.+-. +..+++.....+. .......|-+.++.++..|.+-. +
T Consensus 166 k~~s--t~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNF--D 241 (673)
T KOG1461|consen 166 KESS--TRETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNF--D 241 (673)
T ss_pred eccc--cccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcc--c
Confidence 4431 0112233433344 356777776511 1111111101000 01223577888888877654321 2
Q ss_pred Ccccchhhhhhhh-h--CCceEEEEEecC--CcCCCCCHHHHHHHHHHHHHh
Q 022555 246 LQLEEDLEQLKVL-E--NGYKMKVIKVDH--EAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 246 ~~~~d~~~~~~~~-~--~G~~v~~v~~~~--~~idIdtpeDl~~ae~ll~~r 292 (295)
++..+++- ..++ . .|++|++.+.+. +...|....-|....+-+-+|
T Consensus 242 yq~r~DfV-~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~R 292 (673)
T KOG1461|consen 242 YQTRDDFV-RGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQR 292 (673)
T ss_pred ceehhhhh-hhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHh
Confidence 23222210 1122 2 599999999873 889999999998888776665
No 98
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.71 E-value=1e-06 Score=78.58 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCCCCC---CccccccC---CcchHHHHHHHHhhC-------CCCCeEEEECC--chHHHHHHHHcC---C
Q 022555 50 VVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLA-------TTLDHLVVATD--DEKIAECCQQFG---A 111 (295)
Q Consensus 50 i~aiIlAaG~gsRl~---~K~l~~i~---gkpLl~~~l~~l~~~-------~~i~~IvVv~~--~~~i~~~~~~~~---~ 111 (295)
+.+||||||.||||+ ||++++++ |+|++++.+++++.. ..+..+++.+. ++.+.++++++. .
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~ 80 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNS 80 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCC
Confidence 368999999999997 89999999 999999999999762 23555555554 466777776643 1
Q ss_pred eE--EeCC-------------------CCCCCcHHHHHHHHHH------cc-ccCCEEEEEeCCcccCCH
Q 022555 112 DV--IMTS-------------------ESCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLIEP 153 (295)
Q Consensus 112 ~v--~~~~-------------------~~~~g~~~~i~~al~~------~~-~~~d~vlv~~~D~Pli~~ 153 (295)
.+ +.++ ...+.|...++.+|.. +. ....++.+...|.++...
T Consensus 81 ~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v 150 (266)
T cd04180 81 YVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKV 150 (266)
T ss_pred ceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccc
Confidence 11 1110 1122333445555542 21 245789999999988755
No 99
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.50 E-value=5.5e-06 Score=75.87 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=72.9
Q ss_pred CceEEEEEcCCCCCCCC---CccccccC---CcchHHHHHHHHhhCC-----------CCCeEEEECC---chHHHHHHH
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLAT-----------TLDHLVVATD---DEKIAECCQ 107 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~---gkpLl~~~l~~l~~~~-----------~i~~IvVv~~---~~~i~~~~~ 107 (295)
.++.+||||||.||||+ ||++++++ |+|++++.++.++... .+ .+++.|+ ++.+.++++
T Consensus 14 ~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t~~~~~ 92 (323)
T cd04193 14 GKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEETRKFFK 92 (323)
T ss_pred CCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHHHHHHH
Confidence 35789999999999997 89999997 7999999999998632 13 4556665 466777775
Q ss_pred H---cCC---eE--EeCC-------------------CCCCCcHHHHHHHHHHc------c-ccCCEEEEEeCCcccC--
Q 022555 108 Q---FGA---DV--IMTS-------------------ESCRNGTERCNEALQKL------E-KKYDIVVNIQGDEPLI-- 151 (295)
Q Consensus 108 ~---~~~---~v--~~~~-------------------~~~~g~~~~i~~al~~~------~-~~~d~vlv~~~D~Pli-- 151 (295)
+ +|. .+ +.+. ...+.|...++.+|..- . ..-+++.+...|+++.
T Consensus 93 ~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~ 172 (323)
T cd04193 93 ENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKV 172 (323)
T ss_pred hCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccccc
Confidence 4 233 22 1110 01233445566665432 1 2357899999999864
Q ss_pred -CHHHHHHH
Q 022555 152 -EPEIIDGV 159 (295)
Q Consensus 152 -~~~~i~~l 159 (295)
++..|..+
T Consensus 173 ~Dp~~lG~~ 181 (323)
T cd04193 173 ADPVFIGFC 181 (323)
T ss_pred cCHHHhHHH
Confidence 44444433
No 100
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.49 E-value=8.3e-06 Score=78.16 Aligned_cols=181 Identities=17% Similarity=0.140 Sum_probs=100.5
Q ss_pred CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhhCC------------CCCeEEEECC---chHHHHHH
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT------------TLDHLVVATD---DEKIAECC 106 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~~~------------~i~~IvVv~~---~~~i~~~~ 106 (295)
.++.+||||||.||||+ ||+++++ .|+|++++.++++.... ..-.++|.|+ ++.+.+++
T Consensus 105 gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f 184 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFL 184 (482)
T ss_pred CCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHHH
Confidence 46889999999999997 8999999 58999999999998641 1124566654 45666666
Q ss_pred HHc---CC---eE--EeC--------C------------CCCCCcHHHHHHHHHHc------c-ccCCEEEEEeCCcccC
Q 022555 107 QQF---GA---DV--IMT--------S------------ESCRNGTERCNEALQKL------E-KKYDIVVNIQGDEPLI 151 (295)
Q Consensus 107 ~~~---~~---~v--~~~--------~------------~~~~g~~~~i~~al~~~------~-~~~d~vlv~~~D~Pli 151 (295)
+++ |. .+ +.+ . ...+.|...++.+|..- . ..-.++.+...|+++.
T Consensus 185 ~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~ 264 (482)
T PTZ00339 185 EENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILA 264 (482)
T ss_pred HhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccc
Confidence 532 21 11 111 0 01223445577766432 1 2346899999999855
Q ss_pred ---CHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCC--eEEEeecCCCCCCCCC--CCCCCCC-ceE
Q 022555 152 ---EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG--YAIYFSRGLIPYNKSG--KVNPQFP-YLL 223 (295)
Q Consensus 152 ---~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g--~v~~~~~~~i~~~r~~--~~~~~~p-~~~ 223 (295)
+|..|..+++ .+...+...++ +.... ..++++...+| .++.+++-.. ..++. ....... ...
T Consensus 265 k~~DP~flG~~~~---~~~~~~~~kvv-k~~~~-----EkvG~~~~~~g~~~vvEYsEi~~-~~~~~~~~~~g~l~f~~g 334 (482)
T PTZ00339 265 KVLDPEFIGLASS---FPAHDVLNKCV-KREDD-----ESVGVFCLKDYEWQVVEYTEINE-RILNNDELLTGELAFNYG 334 (482)
T ss_pred cccCHHHhHHHHH---CCchhheeeee-cCCCC-----CceeEEEEeCCcccEEEEeccCh-hhhhcccccCCeeccccc
Confidence 5655555443 12201222222 32211 13444432233 3444443210 01111 0011222 356
Q ss_pred EEeEEEecHHHHhhc
Q 022555 224 HLGIQSYDSNFLKIY 238 (295)
Q Consensus 224 ~~Giyif~~~~l~~~ 238 (295)
|++..+|+.++|...
T Consensus 335 nI~~h~fsl~fl~~~ 349 (482)
T PTZ00339 335 NICSHIFSLDFLKKV 349 (482)
T ss_pred ceEEEEEEHHHHHHH
Confidence 788899999999753
No 101
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=98.32 E-value=1.9e-05 Score=65.55 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=72.6
Q ss_pred EEEEc---CCCCCCCC-------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCC
Q 022555 52 GIIPA---RFASSRFE-------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCR 121 (295)
Q Consensus 52 aiIlA---aG~gsRl~-------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~ 121 (295)
+||+- ++.-||+. +|.++ .-||.+++..+... +.+|.|++.++++.....+. +++.. .
T Consensus 3 ~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~--~~~i~Vvtpde~~~~~a~~~--~vl~d----~ 70 (210)
T COG1920 3 AIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV--LGEITVVTPDEEVLVPATKL--EVLAD----P 70 (210)
T ss_pred eEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh--cCCceEEcCChHhhhhcccc--eeeec----c
Confidence 45553 46668885 36555 46999999999853 68999999988776554332 44443 1
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
.-.+++.+++..++.. +.++++.+|.|++++++|.++++..+.
T Consensus 71 dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~~~~i~~~~~~~~d 113 (210)
T COG1920 71 DLNTAINAALDEIPLP-SEVIVVMADLPLLSPEHIERALSAAKD 113 (210)
T ss_pred chHHHHHHHHhhCCCC-cceEEEecccccCCHHHHHHHHHhcCC
Confidence 2234677888887633 679999999999999999999987653
No 102
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=98.20 E-value=4.4e-06 Score=71.93 Aligned_cols=102 Identities=27% Similarity=0.408 Sum_probs=56.2
Q ss_pred EEEEEcCC---CCCCCCC-------ccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHH-HcCCeEEeCCCC
Q 022555 51 VGIIPARF---ASSRFEG-------KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ-QFGADVIMTSES 119 (295)
Q Consensus 51 ~aiIlAaG---~gsRl~~-------K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~-~~~~~v~~~~~~ 119 (295)
.+|||-.. .-||+.+ ..|. .-|+.+++..+.. ++ |+|++.++.+...+. .+++.++..+
T Consensus 2 ~~VIPvK~~~~aKSRLs~~L~~~eR~~La----~aMl~Dvl~al~~---v~-v~vVs~d~~v~~~a~~~~g~~vl~d~-- 71 (217)
T PF01983_consen 2 RAVIPVKPLARAKSRLSPVLSPEEREALA----LAMLRDVLAALRA---VD-VVVVSRDPEVAALARARLGAEVLPDP-- 71 (217)
T ss_dssp EEEEE---TT-TTGGGTTTS-HHHHHHHH----HHHHHHHHHHHHH----S-EEEEES--S-TTTTT---SSEEEE----
T ss_pred eEEEEcCCCCccccccCccCCHHHHHHHH----HHHHHHHHHHHHh---cC-eEEeccchhhhhhhhhccCCeEecCC--
Confidence 37777743 3477741 2222 4689999999975 66 888888777766554 6788887653
Q ss_pred CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (295)
..|-...+..|+... ..+.++++++|.|++++++++.+++...
T Consensus 72 ~~gLN~Al~~a~~~~--~~~~vlvl~aDLPll~~~dl~~~l~~~~ 114 (217)
T PF01983_consen 72 GRGLNAALNAALAAA--GDDPVLVLPADLPLLTPEDLDALLAAAG 114 (217)
T ss_dssp -S-HHHHHHHHHH-H----S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred CCCHHHHHHHHHhcc--CCCceEEeecCCccCCHHHHHHHHhccC
Confidence 223334566664333 4578999999999999999999997654
No 103
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.93 E-value=0.00062 Score=61.59 Aligned_cols=227 Identities=15% Similarity=0.140 Sum_probs=119.6
Q ss_pred CceEEEEEcCCCCCCCC---Ccccccc-CCcchHHHHHHHHhhCC---CC-CeEEEECC---chHHHHHHHHcCC---eE
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT---TL-DHLVVATD---DEKIAECCQQFGA---DV 113 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i-~gkpLl~~~l~~l~~~~---~i-~~IvVv~~---~~~i~~~~~~~~~---~v 113 (295)
.++.+|+||||.||||| ||-++++ .|+++++..+++++... +. =..+|.|+ +++..+++++++. .+
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~~~v 81 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNVDI 81 (300)
T ss_pred CcEEEEEecCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCccCe
Confidence 46889999999999998 8999998 67899999999886421 12 25667665 4667777765531 11
Q ss_pred --EeC-------------------C---CCCCCcHHHHHHHHHHc-------cccCCEEEEEeCCcccCCHHHHHH-HHH
Q 022555 114 --IMT-------------------S---ESCRNGTERCNEALQKL-------EKKYDIVVNIQGDEPLIEPEIIDG-VVK 161 (295)
Q Consensus 114 --~~~-------------------~---~~~~g~~~~i~~al~~~-------~~~~d~vlv~~~D~Pli~~~~i~~-li~ 161 (295)
+.+ + ...+.|...++.+|..- ...-+++.+.+.|+ +.. .++- ++.
T Consensus 82 ~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN-L~a--~~Dp~~lg 158 (300)
T cd00897 82 HTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN-LGA--TVDLRILN 158 (300)
T ss_pred EEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc-ccc--cCCHHHHH
Confidence 110 0 01222333466665432 12357899999998 542 2332 223
Q ss_pred HHHhCCCcEEEEeeeeCCCCCCCCCC-ceEEEECCCCeEE--EeecCCCCCCCCCCCCCC-CCceEEEeEEEecHHHHhh
Q 022555 162 ALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAI--YFSRGLIPYNKSGKVNPQ-FPYLLHLGIQSYDSNFLKI 237 (295)
Q Consensus 162 ~~~~~~d~~v~v~~~~~~~~~~~~p~-~~~v~~d~~g~v~--~~~~~~i~~~r~~~~~~~-~p~~~~~Giyif~~~~l~~ 237 (295)
.+.++ ++.++.-+++-+ .|+ .++++...+|+.. ++.+ +|......+... .=..+|++...|+-++|.+
T Consensus 159 ~~~~~-~~~~~~evv~Kt-----~~dek~G~l~~~~g~~~vvEyse--~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~ 230 (300)
T cd00897 159 HMVDN-KAEYIMEVTDKT-----RADVKGGTLIQYEGKLRLLEIAQ--VPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKR 230 (300)
T ss_pred HHHhc-CCceEEEEeecC-----CCCCcccEEEEECCEEEEEEecc--CCHHHHHhhcCcccceEEEEeEEEEEHHHHHH
Confidence 33322 333444333221 111 3444444466643 3333 221100011111 1246788989999988875
Q ss_pred ccc-----CC---------CC--CCcccchhhhhhhhhCCceEEEEEec-CCcCCCCCHHHHHHHHH
Q 022555 238 YPG-----LH---------PT--PLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIES 287 (295)
Q Consensus 238 ~~~-----~~---------~~--~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdtpeDl~~ae~ 287 (295)
..+ +. ++ .++++..+. .++..-.+..+++.. ++..-|.+..||.....
T Consensus 231 ~~~~~~~~lp~h~~~K~v~p~~~~~qlE~~i~--da~~~~~~~~~~eV~R~rF~PvKn~~dll~~~s 295 (300)
T cd00897 231 VVEENALDLEIIVNPKTVDGGLNVIQLETAVG--AAIKNFDNALGVNVPRSRFLPVKTTSDLLLVRS 295 (300)
T ss_pred HHHhccCCCCeeecccccCCCCCEEEeHhHhh--hHHHhCCCcEEEEEChhhcCCCCChHHHHhhhh
Confidence 321 11 00 011111111 122221233444443 56889999999976543
No 104
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.75 E-value=0.0014 Score=62.62 Aligned_cols=232 Identities=12% Similarity=0.080 Sum_probs=120.3
Q ss_pred CCceEEEEEcCCCCCCCC---Ccccccc-CCcchHHHHHHHHhhCC---CCC-eEEEECC---chHHHHHHHHcC---Ce
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT---TLD-HLVVATD---DEKIAECCQQFG---AD 112 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i-~gkpLl~~~l~~l~~~~---~i~-~IvVv~~---~~~i~~~~~~~~---~~ 112 (295)
..++.+|+||||.||||| ||-++++ .|+++++..++++.... +++ ..++.++ +++..+++++++ ..
T Consensus 77 L~k~avlkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~~~ 156 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSNIE 156 (469)
T ss_pred HhcEEEEEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCccc
Confidence 467899999999999998 8999998 67999998888875321 222 4566665 466677776653 22
Q ss_pred E--EeCC---------------C-------CCCCcHHHHHHHHHHc-------cccCCEEEEEeCCcccCCHHHHHH-HH
Q 022555 113 V--IMTS---------------E-------SCRNGTERCNEALQKL-------EKKYDIVVNIQGDEPLIEPEIIDG-VV 160 (295)
Q Consensus 113 v--~~~~---------------~-------~~~g~~~~i~~al~~~-------~~~~d~vlv~~~D~Pli~~~~i~~-li 160 (295)
+ +.+. . +.+.|...++.+|... ...-+++++.+.|+ +. ..++- ++
T Consensus 157 i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lg--a~vDp~~l 233 (469)
T PLN02474 157 IHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LG--AIVDLKIL 233 (469)
T ss_pred eEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cc--cccCHHHH
Confidence 2 1110 0 2333444566655432 12357899999998 43 22222 22
Q ss_pred HHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCCCC-CCCCCCCCCCCceEEEeEEEecHHHHhhcc
Q 022555 161 KALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY-NKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 239 (295)
Q Consensus 161 ~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~-~r~~~~~~~~p~~~~~Giyif~~~~l~~~~ 239 (295)
..+.++ ++.+++-+++-+..+ ...+++...+|+..-..-..+|. ..+.......=.++|++...|+-++|.+..
T Consensus 234 g~~~~~-~~e~~~ev~~Kt~~d----~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~ 308 (469)
T PLN02474 234 NHLIQN-KNEYCMEVTPKTLAD----VKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (469)
T ss_pred HHHHhc-CCceEEEEeecCCCC----CCccEEEEECCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHh
Confidence 233322 333343333221111 12344444566643222221221 111111111124778999999999987642
Q ss_pred c---CC------CCCC-----cccc-hhhhhhhhhCCceEEEEEec-CCcCCCCCHHHHHHHHHH
Q 022555 240 G---LH------PTPL-----QLEE-DLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESF 288 (295)
Q Consensus 240 ~---~~------~~~~-----~~~d-~~~~~~~~~~G~~v~~v~~~-~~~idIdtpeDl~~ae~l 288 (295)
+ +. +... ++-| .+. .++..=.+..+++.. .++.-|.+.+|+..+.+-
T Consensus 309 ~~~~l~~~~I~n~k~~~g~kv~q~Et~ig--~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsd 371 (469)
T PLN02474 309 EADALKMEIIPNPKEVDGVKVLQLETAAG--AAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSD 371 (469)
T ss_pred hcCCCCceeecCCCCCCCeeEEEeHHHHH--HHHHhCCCceEEEEchhhccCCCCCCCHHHHHHH
Confidence 1 10 1110 0101 010 112211123334433 568889999999888753
No 105
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.64 E-value=0.00096 Score=64.12 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=67.5
Q ss_pred CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhhCC-------------CCC-eEEEECC---chHHHH
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-------------TLD-HLVVATD---DEKIAE 104 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~~~-------------~i~-~IvVv~~---~~~i~~ 104 (295)
.++.+|+||||.||||| ||-+.+| .++++++..++++.... .+. .++|.|+ ++...+
T Consensus 115 gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ 194 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRK 194 (493)
T ss_pred CCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHH
Confidence 57889999999999998 7988876 58999999999874311 111 4577776 466667
Q ss_pred HHHHc---C-----CeEEeCC-------------------CCCCCcHHHHHHHHHHcc-------ccCCEEEEEeCCccc
Q 022555 105 CCQQF---G-----ADVIMTS-------------------ESCRNGTERCNEALQKLE-------KKYDIVVNIQGDEPL 150 (295)
Q Consensus 105 ~~~~~---~-----~~v~~~~-------------------~~~~g~~~~i~~al~~~~-------~~~d~vlv~~~D~Pl 150 (295)
+++++ | +.++.+. ...+.|...++.+|..-+ ..-.++.+...|+++
T Consensus 195 ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 274 (493)
T PLN02435 195 FFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL 274 (493)
T ss_pred HHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence 77643 2 1112110 123345556777765421 235789999999976
Q ss_pred C
Q 022555 151 I 151 (295)
Q Consensus 151 i 151 (295)
.
T Consensus 275 ~ 275 (493)
T PLN02435 275 V 275 (493)
T ss_pred c
Confidence 4
No 106
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.40 E-value=0.00095 Score=60.72 Aligned_cols=103 Identities=15% Similarity=0.074 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhhCC-------C-CCeEEEECC---chHHHHHHHHcC---
Q 022555 51 VGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-------T-LDHLVVATD---DEKIAECCQQFG--- 110 (295)
Q Consensus 51 ~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~~~-------~-i~~IvVv~~---~~~i~~~~~~~~--- 110 (295)
.+|+||||.|+||| ||-++++ .|+++++..+++++... . .-.++|.|+ +++..+++++++
T Consensus 2 a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yFG 81 (315)
T cd06424 2 VFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYFG 81 (315)
T ss_pred EEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCccC
Confidence 57999999999998 8999998 68999999999886531 1 125677776 466667776432
Q ss_pred C---eE--E-------eC------------C---CCCCCcHHHHHHHHHHcc-------ccCCEEEEEeCCcccCCH
Q 022555 111 A---DV--I-------MT------------S---ESCRNGTERCNEALQKLE-------KKYDIVVNIQGDEPLIEP 153 (295)
Q Consensus 111 ~---~v--~-------~~------------~---~~~~g~~~~i~~al~~~~-------~~~d~vlv~~~D~Pli~~ 153 (295)
. .+ + +. + ...++|...++.+|..-+ ..-+++.+...|.++...
T Consensus 82 l~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~ 158 (315)
T cd06424 82 LEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFK 158 (315)
T ss_pred CCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhc
Confidence 1 11 1 00 0 012345556777765431 235789999999988753
No 107
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.19 E-value=0.0084 Score=59.37 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=75.2
Q ss_pred CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhhC-------C---CC-CeEEEECC---chHHHHHHH
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLA-------T---TL-DHLVVATD---DEKIAECCQ 107 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~~-------~---~i-~~IvVv~~---~~~i~~~~~ 107 (295)
.++.+|+||||.|+||| ||-++|+ .|+++++..+++++.. . .+ -.++|.|+ +++..++++
T Consensus 127 ~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~ 206 (615)
T PLN02830 127 GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLE 206 (615)
T ss_pred CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHH
Confidence 57889999999999998 8999986 5899999999988653 0 11 24677776 466667776
Q ss_pred HcCC------eE--Ee--------CC----------C----CCCCcHHHHHHHHHHcc-------ccCCEEEEEeCCccc
Q 022555 108 QFGA------DV--IM--------TS----------E----SCRNGTERCNEALQKLE-------KKYDIVVNIQGDEPL 150 (295)
Q Consensus 108 ~~~~------~v--~~--------~~----------~----~~~g~~~~i~~al~~~~-------~~~d~vlv~~~D~Pl 150 (295)
+++. .+ +. .+ . ..++|...++.+|..-+ ..-.++.+...|+|+
T Consensus 207 ~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L 286 (615)
T PLN02830 207 RNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGL 286 (615)
T ss_pred HCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchh
Confidence 5321 11 11 01 0 12334445666664321 235789999999988
Q ss_pred CCHHHHHHHHHHHHh
Q 022555 151 IEPEIIDGVVKALQA 165 (295)
Q Consensus 151 i~~~~i~~li~~~~~ 165 (295)
+...+ -.++-.+..
T Consensus 287 ~~~Ad-p~flG~~~~ 300 (615)
T PLN02830 287 VFKAI-PAALGVSAT 300 (615)
T ss_pred hhccc-HHHhHHHHh
Confidence 76554 344444433
No 108
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.11 E-value=0.015 Score=55.32 Aligned_cols=185 Identities=15% Similarity=0.078 Sum_probs=96.4
Q ss_pred CCceEEEEEcCCCCCCCC---Ccccccc-CCcchHHHHHHHHhh----CCCCCeEEEECC---chHHHHHHHHcC---Ce
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKL----ATTLDHLVVATD---DEKIAECCQQFG---AD 112 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i-~gkpLl~~~l~~l~~----~~~i~~IvVv~~---~~~i~~~~~~~~---~~ 112 (295)
..++.+|+||||.||||| ||-+.++ .|+++++..++++.. .+.--.++|.++ +++..+++++|. .+
T Consensus 54 ~~kvavl~LaGGlGTrlG~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~ 133 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLGCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVD 133 (420)
T ss_dssp TTCEEEEEEEESBSGCCTESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCC
T ss_pred hCCEEEEEEcCcccCccCCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcc
Confidence 457889999999999997 8999999 678899988887764 211124666664 466777776541 12
Q ss_pred E--E--------eCC-------CC---------CCCcHHHHHHHHHHc-------cccCCEEEEEeCCcccCCHHHHHHH
Q 022555 113 V--I--------MTS-------ES---------CRNGTERCNEALQKL-------EKKYDIVVNIQGDEPLIEPEIIDGV 159 (295)
Q Consensus 113 v--~--------~~~-------~~---------~~g~~~~i~~al~~~-------~~~~d~vlv~~~D~Pli~~~~i~~l 159 (295)
+ + ..+ +. .+.|...++.+|..- ...-+++.+.+.|+ +...-+. .+
T Consensus 134 v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp-~~ 211 (420)
T PF01704_consen 134 VFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDP-VF 211 (420)
T ss_dssp EEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-H-HH
T ss_pred eEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCH-HH
Confidence 1 1 000 00 022444566665432 12357999999999 6533222 23
Q ss_pred HHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCCCCC-CCCCCCCCCCceEEEeEEEecHHHHhhc
Q 022555 160 VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-KSGKVNPQFPYLLHLGIQSYDSNFLKIY 238 (295)
Q Consensus 160 i~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~~-r~~~~~~~~p~~~~~Giyif~~~~l~~~ 238 (295)
+..+.++ ++.++.-+++-+.. . ..++++...+|+..-.....+|.. .+.......-..+|+|--.|+-.+|...
T Consensus 212 lG~~~~~-~~~~~~evv~Kt~~--d--ek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~ 286 (420)
T PF01704_consen 212 LGYMIEK-NADFGMEVVPKTSP--D--EKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRL 286 (420)
T ss_dssp HHHHHHT-T-SEEEEEEE-CST--T--TSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHH
T ss_pred HHHHHhc-cchhheeeeecCCC--C--CceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHH
Confidence 3333332 22233333332210 1 124444444676543322223211 0001111223567887668898888753
No 109
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=96.50 E-value=0.063 Score=45.90 Aligned_cols=92 Identities=13% Similarity=0.236 Sum_probs=60.7
Q ss_pred chHHHHHHHHhhCCCCC---eEEEECC--chHHHHHHHHcCC----eEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEe
Q 022555 75 PMIQRTWERSKLATTLD---HLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ 145 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i~---~IvVv~~--~~~i~~~~~~~~~----~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~ 145 (295)
.+++.+++.+.+...-+ +|+|+.+ .+...++++++.. .++..+....+....+..|++.. ..|++++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a--~~d~i~~lD 92 (234)
T cd06421 15 EIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHT--TGDFVAILD 92 (234)
T ss_pred HHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhC--CCCEEEEEc
Confidence 36788888887654333 6777765 3455555554433 44444322222233467788776 478999999
Q ss_pred CCcccCCHHHHHHHHHHHHhCCCc
Q 022555 146 GDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 146 ~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
+|. .++++.++.+++.+.++++.
T Consensus 93 ~D~-~~~~~~l~~l~~~~~~~~~~ 115 (234)
T cd06421 93 ADH-VPTPDFLRRTLGYFLDDPKV 115 (234)
T ss_pred ccc-CcCccHHHHHHHHHhcCCCe
Confidence 998 67899999999998764443
No 110
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.31 E-value=0.11 Score=40.25 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=56.1
Q ss_pred cchHHHHHHHHhhCC-CCCeEEEECC--chHHHHHHHHcC-----CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEe
Q 022555 74 KPMIQRTWERSKLAT-TLDHLVVATD--DEKIAECCQQFG-----ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ 145 (295)
Q Consensus 74 kpLl~~~l~~l~~~~-~i~~IvVv~~--~~~i~~~~~~~~-----~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~ 145 (295)
.+++.++++++.+.. ...+++|+.+ .++..+...+.. ...+.. ....+....+..++... ..|.+++++
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~--~~d~v~~~d 85 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVIN-EENQGLAAARNAGLKAA--RGEYILFLD 85 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEe-cCCCChHHHHHHHHHHh--cCCEEEEEC
Confidence 689999999998764 2457887776 233333333221 222222 22223344566777776 478999999
Q ss_pred CCcccCCHHHHHHHHHHHHhCCCc
Q 022555 146 GDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 146 ~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
+|..+ .+..+..++..+..+++.
T Consensus 86 ~D~~~-~~~~~~~~~~~~~~~~~~ 108 (156)
T cd00761 86 ADDLL-LPDWLERLVAELLADPEA 108 (156)
T ss_pred CCCcc-CccHHHHHHHHHhcCCCc
Confidence 99965 667777775555444343
No 111
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.29 E-value=0.1 Score=45.16 Aligned_cols=90 Identities=24% Similarity=0.335 Sum_probs=63.7
Q ss_pred CCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcc
Q 022555 72 LGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP 149 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~P 149 (295)
++...|..+++.+... .++|+|+-+ .+...+++++++++++.. ...|-......|+... ..|+++++++|.
T Consensus 10 Ne~~~l~~~l~sl~~~--~~eiivvD~gStD~t~~i~~~~~~~v~~~--~~~g~~~~~n~~~~~a--~~d~vl~lDaD~- 82 (229)
T cd02511 10 NEERNIERCLESVKWA--VDEIIVVDSGSTDRTVEIAKEYGAKVYQR--WWDGFGAQRNFALELA--TNDWVLSLDADE- 82 (229)
T ss_pred CcHHHHHHHHHHHhcc--cCEEEEEeCCCCccHHHHHHHcCCEEEEC--CCCChHHHHHHHHHhC--CCCEEEEEeCCc-
Confidence 4456778888888643 478888775 345567777788887655 2223333455677766 368999999999
Q ss_pred cCCHHHHHHHHHHHHhCCC
Q 022555 150 LIEPEIIDGVVKALQAAPD 168 (295)
Q Consensus 150 li~~~~i~~li~~~~~~~d 168 (295)
.++++.++.+.+.+.+.+.
T Consensus 83 ~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 83 RLTPELADEILALLATDDY 101 (229)
T ss_pred CcCHHHHHHHHHHHhCCCC
Confidence 6789999999988876544
No 112
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=96.21 E-value=0.14 Score=42.36 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=63.0
Q ss_pred CCcchHHHHHHHHhhCCC---CCeEEEECC--chHHHHHHHHcCCeEEeCCCCCCCc-HHHHHHHHHHcc---ccCCEEE
Q 022555 72 LGKPMIQRTWERSKLATT---LDHLVVATD--DEKIAECCQQFGADVIMTSESCRNG-TERCNEALQKLE---KKYDIVV 142 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~---i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~-~~~i~~al~~~~---~~~d~vl 142 (295)
+....|..+++++.+... ..+|+|+.+ .+...+++++++..++........+ ..++..++.... ...|.++
T Consensus 7 ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~ 86 (183)
T cd06438 7 NEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVV 86 (183)
T ss_pred chHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 445678888888875432 135777764 3555666766766665433222233 334556666542 2478999
Q ss_pred EEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 143 NIQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
++++|. .++++.+..+++.+.++.+.
T Consensus 87 ~~DaD~-~~~p~~l~~l~~~~~~~~~~ 112 (183)
T cd06438 87 VFDADN-LVDPNALEELNARFAAGARV 112 (183)
T ss_pred EEcCCC-CCChhHHHHHHHHHhhCCCe
Confidence 999999 66899999999998765554
No 113
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=96.13 E-value=0.039 Score=43.91 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=60.6
Q ss_pred CCcchHHHHHHHHhhC-CCCCeEEEECCc--hHHHHHHHHc-----CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555 72 LGKPMIQRTWERSKLA-TTLDHLVVATDD--EKIAECCQQF-----GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~-~~i~~IvVv~~~--~~i~~~~~~~-----~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv 143 (295)
+....|..+++.+.+. ....+|+|+-+. ++..++++++ ++.++..++.. |....+..|++... .+++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~n~~~~~a~--~~~i~~ 84 (169)
T PF00535_consen 8 NEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENL-GFSAARNRGIKHAK--GEYILF 84 (169)
T ss_dssp S-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHHHHHHHH----SSEEEE
T ss_pred CCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccc-cccccccccccccc--eeEEEE
Confidence 3446788888888765 234577777652 3555555543 45556554432 33455677888874 579999
Q ss_pred EeCCcccCCHHHHHHHHHHHHhCCC
Q 022555 144 IQGDEPLIEPEIIDGVVKALQAAPD 168 (295)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~~~d 168 (295)
++.|. .+++..++.+++.+.+.+.
T Consensus 85 ld~D~-~~~~~~l~~l~~~~~~~~~ 108 (169)
T PF00535_consen 85 LDDDD-IISPDWLEELVEALEKNPP 108 (169)
T ss_dssp EETTE-EE-TTHHHHHHHHHHHCTT
T ss_pred eCCCc-eEcHHHHHHHHHHHHhCCC
Confidence 99999 5667799999999988433
No 114
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=96.09 E-value=0.14 Score=47.10 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=66.1
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHH----HHHHcCCeEE-eCCCC
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAE----CCQQFGADVI-MTSES 119 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~----~~~~~~~~v~-~~~~~ 119 (295)
++++.+|||+--...++ ..+++.+.+.+.+.+.--+|+|+-+ .+...+ +.++.+..+. .....
T Consensus 5 ~~~vSVVIP~yNE~~~i----------~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~ 74 (325)
T PRK10714 5 IKKVSVVIPVYNEQESL----------PELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNR 74 (325)
T ss_pred CCeEEEEEcccCchhhH----------HHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCC
Confidence 45578888876555544 2455555555544432236777664 222222 2333344432 11112
Q ss_pred CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~ 170 (295)
-.|-..++..|+... ..|.++++++|.- .+++.+.++++.+.++.|.+
T Consensus 75 n~G~~~A~~~G~~~A--~gd~vv~~DaD~q-~~p~~i~~l~~~~~~~~DvV 122 (325)
T PRK10714 75 NYGQHSAIMAGFSHV--TGDLIITLDADLQ-NPPEEIPRLVAKADEGYDVV 122 (325)
T ss_pred CCCHHHHHHHHHHhC--CCCEEEEECCCCC-CCHHHHHHHHHHHHhhCCEE
Confidence 224345677888876 4789999999994 68999999999987655543
No 115
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=95.99 E-value=0.18 Score=43.69 Aligned_cols=101 Identities=23% Similarity=0.301 Sum_probs=62.6
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCC---CeEEEECC--chHHHHHHHHc---CCeEEeCCC
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQQF---GADVIMTSE 118 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i---~~IvVv~~--~~~i~~~~~~~---~~~v~~~~~ 118 (295)
++++.+||++-+.. ..|..+++.+.+...- -+|+|+.+ .+...+.++++ ++.++..+.
T Consensus 28 ~~~isVvip~~n~~--------------~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~~ 93 (251)
T cd06439 28 LPTVTIIIPAYNEE--------------AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFPE 93 (251)
T ss_pred CCEEEEEEecCCcH--------------HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcCC
Confidence 45677777765443 3445666665443222 26777765 33444445443 244554432
Q ss_pred CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
..|...++..+++... .|+++++++|. ..+++.+.++++.+.+
T Consensus 94 -~~g~~~a~n~gi~~a~--~d~i~~lD~D~-~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 94 -RRGKAAALNRALALAT--GEIVVFTDANA-LLDPDALRLLVRHFAD 136 (251)
T ss_pred -CCChHHHHHHHHHHcC--CCEEEEEcccc-CcCHHHHHHHHHHhcC
Confidence 2344455677887763 69999999999 4579999999998864
No 116
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=95.97 E-value=0.13 Score=53.04 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=64.8
Q ss_pred hHHHHHHHHhhCCCC-C--eEEEECC--chHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCccc
Q 022555 76 MIQRTWERSKLATTL-D--HLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL 150 (295)
Q Consensus 76 Ll~~~l~~l~~~~~i-~--~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pl 150 (295)
++..++..+.+...- + +|+|+-| .++..+++++.++.++.+++...+-...+-+|++.. +.|.++++++|. .
T Consensus 275 vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL~~a--~GEyIavlDAD~-i 351 (852)
T PRK11498 275 VVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEVGVKYIARPTHEHAKAGNINNALKYA--KGEFVAIFDCDH-V 351 (852)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHCCcEEEEeCCCCcchHHHHHHHHHhC--CCCEEEEECCCC-C
Confidence 567777776644322 2 5777765 577888888888887766543322234577888877 479999999999 5
Q ss_pred CCHHHHHHHHHHHHhCCCc
Q 022555 151 IEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 151 i~~~~i~~li~~~~~~~d~ 169 (295)
.+++.+++++..+.++++.
T Consensus 352 p~pdfL~~~V~~f~~dP~V 370 (852)
T PRK11498 352 PTRSFLQMTMGWFLKDKKL 370 (852)
T ss_pred CChHHHHHHHHHHHhCCCe
Confidence 7889999999887666554
No 117
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=95.83 E-value=0.17 Score=51.53 Aligned_cols=91 Identities=16% Similarity=0.297 Sum_probs=63.6
Q ss_pred hHHHHHHHHhhCCCC-C--eEEEECCc--------------------hHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHH
Q 022555 76 MIQRTWERSKLATTL-D--HLVVATDD--------------------EKIAECCQQFGADVIMTSESCRNGTERCNEALQ 132 (295)
Q Consensus 76 Ll~~~l~~l~~~~~i-~--~IvVv~~~--------------------~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~ 132 (295)
+++.+++.+.+...- + +|+|+-+. +++++++++.++.++.+++...+-...+.+|++
T Consensus 146 iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~n~~~KAgnLN~al~ 225 (713)
T TIGR03030 146 IVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRNVHAKAGNINNALK 225 (713)
T ss_pred HHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCCCCCCChHHHHHHHH
Confidence 567788887654332 2 67776542 245566777788877665443233445778888
Q ss_pred HccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 133 KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 133 ~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
.. +.|.++++++|+ ..+++.+++++..+.++++.
T Consensus 226 ~a--~gd~Il~lDAD~-v~~pd~L~~~v~~f~~dp~v 259 (713)
T TIGR03030 226 HT--DGELILIFDADH-VPTRDFLQRTVGWFVEDPKL 259 (713)
T ss_pred hc--CCCEEEEECCCC-CcChhHHHHHHHHHHhCCCE
Confidence 77 468999999999 56899999999988766554
No 118
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.80 E-value=0.2 Score=41.73 Aligned_cols=92 Identities=18% Similarity=0.311 Sum_probs=60.1
Q ss_pred hHHHHHHHHhhCCC-CCeEEEECC---chHHHH----HHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCC
Q 022555 76 MIQRTWERSKLATT-LDHLVVATD---DEKIAE----CCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGD 147 (295)
Q Consensus 76 Ll~~~l~~l~~~~~-i~~IvVv~~---~~~i~~----~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D 147 (295)
.|..+++.+.+... -.+|+|+.+ ++...+ +.+++++.++..+.. .|...+...|+... ..+.++++++|
T Consensus 14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n-~G~~~a~N~g~~~a--~gd~i~~lD~D 90 (201)
T cd04195 14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN-RGLGKALNEGLKHC--TYDWVARMDTD 90 (201)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc-ccHHHHHHHHHHhc--CCCEEEEeCCc
Confidence 78899998876432 246666644 233333 333445555544332 34445567777766 47899999999
Q ss_pred cccCCHHHHHHHHHHHHhCCCcEE
Q 022555 148 EPLIEPEIIDGVVKALQAAPDAVF 171 (295)
Q Consensus 148 ~Pli~~~~i~~li~~~~~~~d~~v 171 (295)
. ...+..++.+++.+.++++..+
T Consensus 91 d-~~~~~~l~~~~~~~~~~~~~~~ 113 (201)
T cd04195 91 D-ISLPDRFEKQLDFIEKNPEIDI 113 (201)
T ss_pred c-ccCcHHHHHHHHHHHhCCCeEE
Confidence 9 6789999999999876655443
No 119
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=95.74 E-value=0.011 Score=56.02 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCCCCCCC---CccccccC-CcchHHHHHHHHhh
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKL 86 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~-gkpLl~~~l~~l~~ 86 (295)
..++.+|+||||.|+||| ||.+.++. |+++++.+++.++.
T Consensus 103 ~~klAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~ 146 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKY 146 (472)
T ss_pred cCceEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHH
Confidence 457889999999999997 89999997 99999999988763
No 120
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=95.69 E-value=0.12 Score=40.58 Aligned_cols=89 Identities=25% Similarity=0.262 Sum_probs=44.3
Q ss_pred HHHHHhhCCCCCeEEEECCch---HHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHH
Q 022555 80 TWERSKLATTLDHLVVATDDE---KIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII 156 (295)
Q Consensus 80 ~l~~l~~~~~i~~IvVv~~~~---~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i 156 (295)
|++++.+....+.++..++.. .........++.+..+. ..+-..++.+|++......+.++++.+|.|.++++.|
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~--g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l 78 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQ--GGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDL 78 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE----SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHH
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecC--CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHH
Confidence 456666665454444444422 11111223456665432 1122357888888774456799999999999999999
Q ss_pred HHHHHHHHhCCCcEE
Q 022555 157 DGVVKALQAAPDAVF 171 (295)
Q Consensus 157 ~~li~~~~~~~d~~v 171 (295)
++..+.+... +.++
T Consensus 79 ~~A~~~L~~~-d~Vl 92 (122)
T PF09837_consen 79 EQAFEALQRH-DVVL 92 (122)
T ss_dssp HHHHHHTTT--SEEE
T ss_pred HHHHHHhccC-CEEE
Confidence 9999988754 5544
No 121
>PRK11204 N-glycosyltransferase; Provisional
Probab=95.24 E-value=0.77 Score=43.42 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=58.0
Q ss_pred chHHHHHHHHhhCCCC-CeEEEECC--chHHHH----HHHHcC-CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeC
Q 022555 75 PMIQRTWERSKLATTL-DHLVVATD--DEKIAE----CCQQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 146 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i-~~IvVv~~--~~~i~~----~~~~~~-~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~ 146 (295)
..+..+++.+.+...- .+|+|+.+ .++..+ +.+++. +.++..++ ..|-..++..|++.. ..|.++++++
T Consensus 67 ~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~-n~Gka~aln~g~~~a--~~d~i~~lDa 143 (420)
T PRK11204 67 ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAE-NQGKANALNTGAAAA--RSEYLVCIDG 143 (420)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCC-CCCHHHHHHHHHHHc--CCCEEEEECC
Confidence 4567888877654322 36777765 233333 333333 44444332 234445677777776 4799999999
Q ss_pred CcccCCHHHHHHHHHHHHhCCCc
Q 022555 147 DEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 147 D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
|. .++++.++++++.+.++++.
T Consensus 144 D~-~~~~d~L~~l~~~~~~~~~v 165 (420)
T PRK11204 144 DA-LLDPDAAAYMVEHFLHNPRV 165 (420)
T ss_pred CC-CCChhHHHHHHHHHHhCCCe
Confidence 99 67899999999999765543
No 122
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=95.17 E-value=0.45 Score=43.37 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=66.7
Q ss_pred CCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhC---CCCCeEEEECC--chHHHHHHHHcCCeEEeCC---
Q 022555 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLA---TTLDHLVVATD--DEKIAECCQQFGADVIMTS--- 117 (295)
Q Consensus 46 ~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~---~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~--- 117 (295)
..+++.+||+|-.... .|..+++.+.+. +...+|+|+-+ .+...+++++++..++...
T Consensus 29 ~~~~vSVVIPayNee~--------------~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~ 94 (306)
T PRK13915 29 AGRTVSVVLPALNEEE--------------TVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEIL 94 (306)
T ss_pred CCCCEEEEEecCCcHH--------------HHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhh
Confidence 3467889999864433 334555555432 23457887764 3455566666655432211
Q ss_pred ---CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555 118 ---ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 118 ---~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~ 170 (295)
....|-..++..++... ..|.++++++|.-..+++.+.++++.+..+++..
T Consensus 95 ~~~~~n~Gkg~A~~~g~~~a--~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~ 148 (306)
T PRK13915 95 PELPPRPGKGEALWRSLAAT--TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVH 148 (306)
T ss_pred hccccCCCHHHHHHHHHHhc--CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCce
Confidence 11123334566777765 4689999999984468999999999886444443
No 123
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.02 E-value=0.48 Score=37.60 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=60.9
Q ss_pred CCcchHHHHHHHHhhCC-CCCeEEEECC--chHHHHHHHHcC--CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeC
Q 022555 72 LGKPMIQRTWERSKLAT-TLDHLVVATD--DEKIAECCQQFG--ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 146 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~-~i~~IvVv~~--~~~i~~~~~~~~--~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~ 146 (295)
+...++..+++.+.+.. ...+|+|+.+ .+...+.+++.. +.++..+ ...|...+...+++.. +.++++++++
T Consensus 7 ~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~~~~~~--~~~~i~~~D~ 83 (166)
T cd04186 7 NSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNG-ENLGFGAGNNQGIREA--KGDYVLLLNP 83 (166)
T ss_pred CCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecC-CCcChHHHhhHHHhhC--CCCEEEEECC
Confidence 44578899999987653 2346777665 233344444433 4444332 2234445567778777 5789999999
Q ss_pred CcccCCHHHHHHHHHHHHhCCCc
Q 022555 147 DEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 147 D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
|. .+++..+..+++.+.++++.
T Consensus 84 D~-~~~~~~l~~~~~~~~~~~~~ 105 (166)
T cd04186 84 DT-VVEPGALLELLDAAEQDPDV 105 (166)
T ss_pred Cc-EECccHHHHHHHHHHhCCCc
Confidence 99 56788999999887765544
No 124
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=94.88 E-value=0.96 Score=39.27 Aligned_cols=110 Identities=11% Similarity=0.123 Sum_probs=61.3
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHH----HHcC-CeEE-
Q 022555 43 SKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECC----QQFG-ADVI- 114 (295)
Q Consensus 43 ~~~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~----~~~~-~~v~- 114 (295)
++..++++.+|||+-.....++ .+++...+.+...+ --+|+|+-+ .+...+++ ++++ ..+.
T Consensus 4 ~~~~~~~vsVvIp~yne~~~l~----------~~l~~l~~~~~~~~-~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~ 72 (243)
T PLN02726 4 PGEGAMKYSIIVPTYNERLNIA----------LIVYLIFKALQDVK-DFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILL 72 (243)
T ss_pred CCCCCceEEEEEccCCchhhHH----------HHHHHHHHHhccCC-CeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 4555678889999765544431 22222222222221 226777654 23223333 3333 2222
Q ss_pred eCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 115 ~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
.....-.|...++..|+... ..++++++++|.. .+++.+..+++.+.++
T Consensus 73 ~~~~~n~G~~~a~n~g~~~a--~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~ 121 (243)
T PLN02726 73 RPRPGKLGLGTAYIHGLKHA--SGDFVVIMDADLS-HHPKYLPSFIKKQRET 121 (243)
T ss_pred EecCCCCCHHHHHHHHHHHc--CCCEEEEEcCCCC-CCHHHHHHHHHHHHhc
Confidence 22112223344566777776 4689999999995 6899999999987653
No 125
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.87 E-value=0.63 Score=43.68 Aligned_cols=106 Identities=14% Similarity=0.163 Sum_probs=62.7
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCC--CCeEEEECC--chHHHHHH----HHc----CCeEE
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT--LDHLVVATD--DEKIAECC----QQF----GADVI 114 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~--i~~IvVv~~--~~~i~~~~----~~~----~~~v~ 114 (295)
.+++.+||+|.+. ...|..+++.+.+... .-+|+||-+ .+...+++ +++ .+.++
T Consensus 39 ~p~VSVIIpa~Ne--------------~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi 104 (384)
T TIGR03469 39 WPAVVAVVPARNE--------------ADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVV 104 (384)
T ss_pred CCCEEEEEecCCc--------------HhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEe
Confidence 4567777777644 3456777887765422 236777765 23333333 233 23433
Q ss_pred eCCC---CCCCcHHHHHHHHHHccc---cCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 022555 115 MTSE---SCRNGTERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167 (295)
Q Consensus 115 ~~~~---~~~g~~~~i~~al~~~~~---~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~ 167 (295)
..++ ...|-..++..|++.... +.|.++++++|. ..+++.++++++.+.+++
T Consensus 105 ~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~-~~~p~~l~~lv~~~~~~~ 162 (384)
T TIGR03469 105 SGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADI-AHGPDNLARLVARARAEG 162 (384)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCC-CCChhHHHHHHHHHHhCC
Confidence 3211 111223346667766531 168999999999 578999999999887643
No 126
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=94.64 E-value=0.66 Score=36.63 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=57.0
Q ss_pred CCcchHHHHHHHHhhCCC-CCeEEEECC--chHHHHHHHHcC----C-eEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555 72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFG----A-DVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~i~~~~~~~~----~-~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv 143 (295)
+....|..+++.+.+... -.+|+|+-+ .+...+.+.++. . .++.......|-..+...+++.. ..+.+++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~~~i~~ 84 (180)
T cd06423 7 NEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KGDIVVV 84 (180)
T ss_pred ChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CCCEEEE
Confidence 334678888888876431 346777654 222333333321 1 12222222233344566778776 4789999
Q ss_pred EeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 144 IQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
+++|. .+.+..+..++..+.++++.
T Consensus 85 ~D~D~-~~~~~~l~~~~~~~~~~~~~ 109 (180)
T cd06423 85 LDADT-ILEPDALKRLVVPFFADPKV 109 (180)
T ss_pred ECCCC-CcChHHHHHHHHHhccCCCe
Confidence 99999 66899999997766655443
No 127
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=94.58 E-value=0.73 Score=39.47 Aligned_cols=88 Identities=19% Similarity=0.318 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhCCC-CCeEEEECC---ch----HHHHHHHHcCCe--EEeCCCCCCCc-HHHHHHHHHHccccCCEEEEE
Q 022555 76 MIQRTWERSKLATT-LDHLVVATD---DE----KIAECCQQFGAD--VIMTSESCRNG-TERCNEALQKLEKKYDIVVNI 144 (295)
Q Consensus 76 Ll~~~l~~l~~~~~-i~~IvVv~~---~~----~i~~~~~~~~~~--v~~~~~~~~g~-~~~i~~al~~~~~~~d~vlv~ 144 (295)
+|..+++.+.+... -.+|+|+-+ ++ .+++++++++.+ ++... ...|. ..++..|++....+.|.++++
T Consensus 13 ~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~-~~~G~~~~a~n~g~~~a~~~~d~i~~l 91 (236)
T cd06435 13 MVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE-PLPGAKAGALNYALERTAPDAEIIAVI 91 (236)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC-CCCCCchHHHHHHHHhcCCCCCEEEEE
Confidence 78899999876532 236777664 22 223555554433 33332 22343 455677777764336899999
Q ss_pred eCCcccCCHHHHHHHHHHHHh
Q 022555 145 QGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 145 ~~D~Pli~~~~i~~li~~~~~ 165 (295)
++|. .++++.|.+++..+.+
T Consensus 92 D~D~-~~~~~~l~~l~~~~~~ 111 (236)
T cd06435 92 DADY-QVEPDWLKRLVPIFDD 111 (236)
T ss_pred cCCC-CcCHHHHHHHHHHhcC
Confidence 9998 7899999999988753
No 128
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=94.45 E-value=0.59 Score=39.92 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=54.8
Q ss_pred chHHHHHHHHhhCCCCCeEEEECC--chHHHHHH---HHcC-CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCc
Q 022555 75 PMIQRTWERSKLATTLDHLVVATD--DEKIAECC---QQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 148 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~---~~~~-~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~ 148 (295)
+.|..+++.+.+.. ..+|+|+.+ .+.....+ .... +.++. . ...|-..++..|+... ..|.++++++|.
T Consensus 14 ~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~-~-~~~g~~~a~n~g~~~a--~~d~v~~lD~D~ 88 (235)
T cd06434 14 DVFRECLRSILRQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVIT-V-PHPGKRRALAEGIRHV--TTDIVVLLDSDT 88 (235)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHHHHhhccCCcEEEEe-c-CCCChHHHHHHHHHHh--CCCEEEEECCCc
Confidence 67888898887654 447777765 23333332 2222 22332 2 2234344566777776 479999999999
Q ss_pred ccCCHHHHHHHHHHHH
Q 022555 149 PLIEPEIIDGVVKALQ 164 (295)
Q Consensus 149 Pli~~~~i~~li~~~~ 164 (295)
.+++..++++++.+.
T Consensus 89 -~~~~~~l~~l~~~~~ 103 (235)
T cd06434 89 -VWPPNALPEMLKPFE 103 (235)
T ss_pred -eeChhHHHHHHHhcc
Confidence 678889999999887
No 129
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.39 E-value=1.3 Score=36.75 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=56.4
Q ss_pred chHHHHHHHHhhCCCC-CeEEEECC---chHHHHHHHH-----cCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEe
Q 022555 75 PMIQRTWERSKLATTL-DHLVVATD---DEKIAECCQQ-----FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ 145 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i-~~IvVv~~---~~~i~~~~~~-----~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~ 145 (295)
..+..+++.+.+...- .+|+|+-+ ++....+.+. ..+.++..+ ...|...++..|++.. ..|++++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~g~~~a--~~d~i~~ld 91 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFRE-ENGGISAATNSALELA--TGEFVALLD 91 (202)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcc-cCCCHHHHHHHHHHhh--cCCEEEEEC
Confidence 6678888888654322 26666654 2233333322 123343332 2223344566777776 468999999
Q ss_pred CCcccCCHHHHHHHHHHHHhCCCcE
Q 022555 146 GDEPLIEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 146 ~D~Pli~~~~i~~li~~~~~~~d~~ 170 (295)
+|. .+++..++.+++.+.++++..
T Consensus 92 ~D~-~~~~~~l~~~~~~~~~~~~~~ 115 (202)
T cd04184 92 HDD-ELAPHALYEVVKALNEHPDAD 115 (202)
T ss_pred CCC-cCChHHHHHHHHHHHhCCCCC
Confidence 999 668999999999885444443
No 130
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=94.37 E-value=0.91 Score=38.36 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=55.5
Q ss_pred CCcchHHHHHHHHhhCC--CCCeEEEECC--chHHHH----HHHHcC-CeEEeCCCCCCCcHHHHHHHHHHccccCCEEE
Q 022555 72 LGKPMIQRTWERSKLAT--TLDHLVVATD--DEKIAE----CCQQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVV 142 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~--~i~~IvVv~~--~~~i~~----~~~~~~-~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vl 142 (295)
+....|..+++.+.+.. .-.+|+||-+ .+...+ +.++.. +.++... ...|-..++..|++... .|.++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~-~n~G~~~a~n~g~~~a~--gd~i~ 83 (224)
T cd06442 7 NERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRP-GKRGLGSAYIEGFKAAR--GDVIV 83 (224)
T ss_pred chhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecC-CCCChHHHHHHHHHHcC--CCEEE
Confidence 44456788888887542 1346777664 232233 333333 3333332 22333455677888773 68999
Q ss_pred EEeCCcccCCHHHHHHHHHHHHh
Q 022555 143 NIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~~~ 165 (295)
++++|. ..+++.+..+++.+..
T Consensus 84 ~lD~D~-~~~~~~l~~l~~~~~~ 105 (224)
T cd06442 84 VMDADL-SHPPEYIPELLEAQLE 105 (224)
T ss_pred EEECCC-CCCHHHHHHHHHHHhc
Confidence 999998 4689999999998643
No 131
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.37 E-value=1.1 Score=41.79 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=60.4
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCC-CCeEEEECC--chH----HHHHHHHcC---CeEEeC
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQFG---ADVIMT 116 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~----i~~~~~~~~---~~v~~~ 116 (295)
.+.++.|||+.+.. +.|..+++.+.+... --+|+|+.+ ++. ++++.++++ +.++..
T Consensus 40 ~p~VSViiP~~nee--------------~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~ 105 (373)
T TIGR03472 40 WPPVSVLKPLHGDE--------------PELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVID 105 (373)
T ss_pred CCCeEEEEECCCCC--------------hhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEEC
Confidence 34578888877554 445677777754432 247777654 222 223333332 333443
Q ss_pred CCCCCC---cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 117 SESCRN---GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 117 ~~~~~g---~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
++. .| ....+.++++.. ..|.++++++|. .++++.+++++..+.+
T Consensus 106 ~~~-~G~~~K~~~l~~~~~~a--~ge~i~~~DaD~-~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 106 ARR-HGPNRKVSNLINMLPHA--RHDILVIADSDI-SVGPDYLRQVVAPLAD 153 (373)
T ss_pred CCC-CCCChHHHHHHHHHHhc--cCCEEEEECCCC-CcChhHHHHHHHHhcC
Confidence 322 22 223445555555 479999999998 6699999999988853
No 132
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=94.32 E-value=1.2 Score=39.77 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCe-EEeCCCC--CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHH---HHHhCCCcEEEEe
Q 022555 101 KIAECCQQFGAD-VIMTSES--CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK---ALQAAPDAVFSTA 174 (295)
Q Consensus 101 ~i~~~~~~~~~~-v~~~~~~--~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~---~~~~~~d~~v~v~ 174 (295)
.+..++++.+.. ++..+.. .-+.+...-.|+... ..|.++++++|+ +++++.++++++ .+.++++..+...
T Consensus 51 ~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A--~~d~l~flD~D~-i~~~~~i~~~~~~~~~l~~~~~~~~~~p 127 (281)
T PF10111_consen 51 ELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYA--RGDYLIFLDADC-IPSPDFIEKLLNHVKKLDKNPNAFLVYP 127 (281)
T ss_pred HHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHc--CCCEEEEEcCCe-eeCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 445666666665 3333211 112233334555555 478999999999 789999999999 5555555555554
Q ss_pred e
Q 022555 175 V 175 (295)
Q Consensus 175 ~ 175 (295)
+
T Consensus 128 ~ 128 (281)
T PF10111_consen 128 C 128 (281)
T ss_pred e
Confidence 3
No 133
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=94.14 E-value=1.5 Score=35.86 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 121 ~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
.|...++..++.... .|+++++++|.. .+++.++.+++.+..+.+.
T Consensus 66 ~G~~~a~n~g~~~a~--~d~i~~~D~D~~-~~~~~l~~l~~~~~~~~~~ 111 (181)
T cd04187 66 FGQQAALLAGLDHAR--GDAVITMDADLQ-DPPELIPEMLAKWEEGYDV 111 (181)
T ss_pred CCcHHHHHHHHHhcC--CCEEEEEeCCCC-CCHHHHHHHHHHHhCCCcE
Confidence 344556777888773 689999999996 5889999999986554443
No 134
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=94.10 E-value=1.2 Score=36.29 Aligned_cols=88 Identities=22% Similarity=0.177 Sum_probs=55.3
Q ss_pred cchHHHHHHHHhhCC---CCCeEEEECC--chHHHHHHHH----cC-CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555 74 KPMIQRTWERSKLAT---TLDHLVVATD--DEKIAECCQQ----FG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (295)
Q Consensus 74 kpLl~~~l~~l~~~~---~i~~IvVv~~--~~~i~~~~~~----~~-~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv 143 (295)
...|..+++.+.+.. ...+|+|+-+ .+...+.++. .. ..++..+ .-.|...+...+++... .|++++
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~-~n~G~~~a~n~g~~~a~--gd~i~~ 85 (185)
T cd04179 9 EENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLS-RNFGKGAAVRAGFKAAR--GDIVVT 85 (185)
T ss_pred HhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEcc-CCCCccHHHHHHHHHhc--CCEEEE
Confidence 346677788777652 2567777765 2333333332 22 2233333 23344556677777763 589999
Q ss_pred EeCCcccCCHHHHHHHHHHHHh
Q 022555 144 IQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~ 165 (295)
+++|. .+++..++++++.+.+
T Consensus 86 lD~D~-~~~~~~l~~l~~~~~~ 106 (185)
T cd04179 86 MDADL-QHPPEDIPKLLEKLLE 106 (185)
T ss_pred EeCCC-CCCHHHHHHHHHHHhc
Confidence 99998 4589999999998554
No 135
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.78 E-value=0.95 Score=37.12 Aligned_cols=94 Identities=13% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCcchHHHHHHHHhhCCCC-CeEEEECC--chHHHHHHHHcCC--eEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeC
Q 022555 72 LGKPMIQRTWERSKLATTL-DHLVVATD--DEKIAECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 146 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~i-~~IvVv~~--~~~i~~~~~~~~~--~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~ 146 (295)
++...|..+++.+.+...- -+|+|+-+ .+...+.++++.. ..+... ...|...++..|++.. ..++++++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~~~~~a--~~~~v~~ld~ 84 (202)
T cd06433 8 NQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDKITYWISE-PDKGIYDAMNKGIALA--TGDIIGFLNS 84 (202)
T ss_pred chHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhhcEEEEec-CCcCHHHHHHHHHHHc--CCCEEEEeCC
Confidence 4456888899888654321 25666643 2334444444322 223332 2224345567788776 4689999999
Q ss_pred CcccCCHHHHHHHHHHHHhCCCc
Q 022555 147 DEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 147 D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
|. .+.++.+..+++.+...++.
T Consensus 85 D~-~~~~~~~~~~~~~~~~~~~~ 106 (202)
T cd06433 85 DD-TLLPGALLAVVAAFAEHPEV 106 (202)
T ss_pred Cc-ccCchHHHHHHHHHHhCCCc
Confidence 99 56677888888656544343
No 136
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.67 E-value=1.4 Score=37.11 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=54.4
Q ss_pred CCcchHHHHHHHHhhCCCC---CeEEEECC--chHHHHHHH---H-cC--CeEEeCCCCCCCc-HHHHHHHHHHccccCC
Q 022555 72 LGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQ---Q-FG--ADVIMTSESCRNG-TERCNEALQKLEKKYD 139 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~i---~~IvVv~~--~~~i~~~~~---~-~~--~~v~~~~~~~~g~-~~~i~~al~~~~~~~d 139 (295)
+....|..+++.+.....- -+|+|+-+ .+...++++ . .+ +.++..+.....+ ..++..++... ..|
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~--~~d 84 (229)
T cd04192 7 NEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAA--KGD 84 (229)
T ss_pred CcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHh--cCC
Confidence 3445788888888654322 36766664 222223222 2 12 3333322111122 33456677665 478
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 140 IVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 140 ~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
+++++++|. .+.+..++++++.+.++
T Consensus 85 ~i~~~D~D~-~~~~~~l~~l~~~~~~~ 110 (229)
T cd04192 85 WIVTTDADC-VVPSNWLLTFVAFIQKE 110 (229)
T ss_pred EEEEECCCc-ccCHHHHHHHHHHhhcC
Confidence 999999999 67899999999977654
No 137
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=93.64 E-value=1.4 Score=42.27 Aligned_cols=105 Identities=15% Similarity=0.235 Sum_probs=65.4
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCC-C--eEEEECC--chHHHHH----HHHc-CCeEEeC
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-D--HLVVATD--DEKIAEC----CQQF-GADVIMT 116 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i-~--~IvVv~~--~~~i~~~----~~~~-~~~v~~~ 116 (295)
.+++.+|||+-. ....|..+++.+.+...- + +|+|+-+ .++..+. .+++ ++.+...
T Consensus 48 ~P~vsVIIP~yN--------------e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~ 113 (439)
T TIGR03111 48 LPDITIIIPVYN--------------SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM 113 (439)
T ss_pred CCCEEEEEEeCC--------------ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe
Confidence 456777777643 345678888887654321 2 4666654 2333332 2232 3344333
Q ss_pred CCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 117 ~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
+.. .|...++-.|++.. ..|.++++++|. ..+++.++++++.+.++++.
T Consensus 114 ~~~-~Gka~AlN~gl~~s--~g~~v~~~DaD~-~~~~d~L~~l~~~f~~~~~v 162 (439)
T TIGR03111 114 NSD-QGKAKALNAAIYNS--IGKYIIHIDSDG-KLHKDAIKNMVTRFENNPDI 162 (439)
T ss_pred CCC-CCHHHHHHHHHHHc--cCCEEEEECCCC-CcChHHHHHHHHHHHhCCCe
Confidence 222 34445677788876 468999999999 56899999999999766554
No 138
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=93.59 E-value=2 Score=37.03 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=54.8
Q ss_pred chHHHHHHHHhhCCCC---CeEEEECC--chHHHHHHHHcC----CeEEeCCCCC-CCcHHHHHHHHHHccccCCEEEEE
Q 022555 75 PMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQQFG----ADVIMTSESC-RNGTERCNEALQKLEKKYDIVVNI 144 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i---~~IvVv~~--~~~i~~~~~~~~----~~v~~~~~~~-~g~~~~i~~al~~~~~~~d~vlv~ 144 (295)
-.|..+++.+.+...- -+|+||.+ .+...++++++. .+++..+... .|...++..|++.. ..|.++++
T Consensus 14 ~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~gd~i~~~ 91 (241)
T cd06427 14 EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--RGEYVVIY 91 (241)
T ss_pred HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--CCCEEEEE
Confidence 4567777777653211 14666543 334444444432 3443322222 23345677788876 46899999
Q ss_pred eCCcccCCHHHHHHHHHHHHhC
Q 022555 145 QGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 145 ~~D~Pli~~~~i~~li~~~~~~ 166 (295)
++|. .+++..+.++++.+.++
T Consensus 92 DaD~-~~~~~~l~~~~~~~~~~ 112 (241)
T cd06427 92 DAED-APDPDQLKKAVAAFARL 112 (241)
T ss_pred cCCC-CCChHHHHHHHHHHHhc
Confidence 9999 68899999999988754
No 139
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.57 E-value=1.9 Score=35.93 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCcchHHHHHHHHhhCCC-CCeEEEECC--chH----HHHHHHHcCCeE-EeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555 72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQFGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~----i~~~~~~~~~~v-~~~~~~~~g~~~~i~~al~~~~~~~d~vlv 143 (295)
+....|..+++.+.+... --+|+|+-+ .+. ++++..+++..+ +...+.-.|....+..++... ..+++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~--~g~~v~~ 85 (214)
T cd04196 8 NGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA--DGDYVFF 85 (214)
T ss_pred CcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhC--CCCEEEE
Confidence 444577888888875431 126666654 222 233333333223 222222223344566677665 4789999
Q ss_pred EeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 144 IQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
+++|. .+.+..+..+++.+.+.+..
T Consensus 86 ld~Dd-~~~~~~l~~~~~~~~~~~~~ 110 (214)
T cd04196 86 CDQDD-IWLPDKLERLLKAFLKDDKP 110 (214)
T ss_pred ECCCc-ccChhHHHHHHHHHhcCCCc
Confidence 99998 56789999999985544333
No 140
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.53 E-value=1.2 Score=39.99 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=57.7
Q ss_pred chHHHHHHHHhhCCC---CCeEEEECC--chHHHHHH-----HHc--CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEE
Q 022555 75 PMIQRTWERSKLATT---LDHLVVATD--DEKIAECC-----QQF--GADVIMTSESCRNGTERCNEALQKLEKKYDIVV 142 (295)
Q Consensus 75 pLl~~~l~~l~~~~~---i~~IvVv~~--~~~i~~~~-----~~~--~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vl 142 (295)
..|..+++.+.+... ..+|+||-+ .+...... ... .++++..+.. .|-..+.-.|++.. ..|+++
T Consensus 12 ~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n-~G~~~a~N~g~~~A--~gd~i~ 88 (299)
T cd02510 12 STLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKR-EGLIRARIAGARAA--TGDVLV 88 (299)
T ss_pred HHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCC-CCHHHHHHHHHHHc--cCCEEE
Confidence 588888888864322 137888765 22222221 122 3555544322 23334556677766 468999
Q ss_pred EEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555 143 NIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~~~~~d~~ 170 (295)
++++|.- +++..++.+++.+.+++..+
T Consensus 89 fLD~D~~-~~~~wL~~ll~~l~~~~~~~ 115 (299)
T cd02510 89 FLDSHCE-VNVGWLEPLLARIAENRKTV 115 (299)
T ss_pred EEeCCcc-cCccHHHHHHHHHHhCCCeE
Confidence 9999994 58999999999988765543
No 141
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=93.50 E-value=1.2 Score=37.52 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=55.0
Q ss_pred CCcchHHHHHHHHhhCC-----CCCeEEEECC--chHH----HHHHHHcCC--eEEeCCCCCCCcHHHHHHHHHHccccC
Q 022555 72 LGKPMIQRTWERSKLAT-----TLDHLVVATD--DEKI----AECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKY 138 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~-----~i~~IvVv~~--~~~i----~~~~~~~~~--~v~~~~~~~~g~~~~i~~al~~~~~~~ 138 (295)
+....|..+++.+.+.. ...+|+|+-+ .+.. +++..+++. .++.... -.|-..++..|++.. ..
T Consensus 7 N~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~-n~G~~~a~~~g~~~a--~g 83 (211)
T cd04188 7 NEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPK-NRGKGGAVRAGMLAA--RG 83 (211)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEccc-CCCcHHHHHHHHHHh--cC
Confidence 44455666676665431 1336777654 2222 233333443 3333322 234445677788877 36
Q ss_pred CEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 139 DIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 139 d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
|+++++++|. ..+++.+.++++.+.++
T Consensus 84 d~i~~ld~D~-~~~~~~l~~l~~~~~~~ 110 (211)
T cd04188 84 DYILFADADL-ATPFEELEKLEEALKTS 110 (211)
T ss_pred CEEEEEeCCC-CCCHHHHHHHHHHHhcc
Confidence 8999999999 57899999999986543
No 142
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.39 E-value=1.4 Score=37.63 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=54.9
Q ss_pred cchHHHHHHHHhhCCC---CCeEEEECC--chHHHHHHHHcC-----CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555 74 KPMIQRTWERSKLATT---LDHLVVATD--DEKIAECCQQFG-----ADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (295)
Q Consensus 74 kpLl~~~l~~l~~~~~---i~~IvVv~~--~~~i~~~~~~~~-----~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv 143 (295)
.+.+..+++.+.+... .-+|+|+-+ .++..+.++.+. +.++..+ ..+...+...|++.. ..|.+++
T Consensus 12 ~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~--~~~~~~a~N~g~~~a--~~d~v~~ 87 (249)
T cd02525 12 EKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNP--KRIQSAGLNIGIRNS--RGDIIIR 87 (249)
T ss_pred hhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCC--CCCchHHHHHHHHHh--CCCEEEE
Confidence 4567888888865432 236777654 233333333221 3333332 223334566777776 4789999
Q ss_pred EeCCcccCCHHHHHHHHHHHHhC
Q 022555 144 IQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
+++|. .+++..++++++.+.+.
T Consensus 88 lD~D~-~~~~~~l~~~~~~~~~~ 109 (249)
T cd02525 88 VDAHA-VYPKDYILELVEALKRT 109 (249)
T ss_pred ECCCc-cCCHHHHHHHHHHHhcC
Confidence 99999 67999999999877653
No 143
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.34 E-value=3 Score=34.67 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=48.9
Q ss_pred hHHHHHHHHhhCCC-CCeEEEECC--chH----HHHHHHHcC-C--eEEeCCCCCCCc---HHHHHHHHHHccccCCEEE
Q 022555 76 MIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQFG-A--DVIMTSESCRNG---TERCNEALQKLEKKYDIVV 142 (295)
Q Consensus 76 Ll~~~l~~l~~~~~-i~~IvVv~~--~~~----i~~~~~~~~-~--~v~~~~~~~~g~---~~~i~~al~~~~~~~d~vl 142 (295)
-|..+++.+.+... --+|+||.+ .+. ++++..++. . .++..+.. .|. ...+..|++.. ..|.++
T Consensus 15 ~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~g~~~a--~~d~i~ 91 (196)
T cd02520 15 NLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEK-VGINPKVNNLIKGYEEA--RYDILV 91 (196)
T ss_pred cHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCc-CCCCHhHHHHHHHHHhC--CCCEEE
Confidence 45666766654321 136777664 222 223333332 2 33333222 122 12345677665 478999
Q ss_pred EEeCCcccCCHHHHHHHHHHHH
Q 022555 143 NIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~~ 164 (295)
++++|. .+++..+..+++.+.
T Consensus 92 ~~D~D~-~~~~~~l~~l~~~~~ 112 (196)
T cd02520 92 ISDSDI-SVPPDYLRRMVAPLM 112 (196)
T ss_pred EECCCc-eEChhHHHHHHHHhh
Confidence 999998 568999999998864
No 144
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=93.32 E-value=2.1 Score=36.19 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=58.1
Q ss_pred cCCcchHHHHHHHHhhCCCC--CeEEEECC--chH----HHHHHHHc---CCeEEeCCC---CCCCcHHHHHHHHHHccc
Q 022555 71 ILGKPMIQRTWERSKLATTL--DHLVVATD--DEK----IAECCQQF---GADVIMTSE---SCRNGTERCNEALQKLEK 136 (295)
Q Consensus 71 i~gkpLl~~~l~~l~~~~~i--~~IvVv~~--~~~----i~~~~~~~---~~~v~~~~~---~~~g~~~~i~~al~~~~~ 136 (295)
.++...|..+++.+.+...- -+|+|+-+ .+. +.++..++ ++.++..+. ...|...+.-.|++..
T Consensus 6 yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a-- 83 (219)
T cd06913 6 HNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQS-- 83 (219)
T ss_pred cCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhc--
Confidence 35567888899888654222 27777764 222 22333222 334333221 1123333445666665
Q ss_pred cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 022555 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (295)
Q Consensus 137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~ 172 (295)
..|+++++++|. +..+..+.+++..+.++++.+++
T Consensus 84 ~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~ 118 (219)
T cd06913 84 SGRYLCFLDSDD-VMMPQRIRLQYEAALQHPNSIIG 118 (219)
T ss_pred CCCEEEEECCCc-cCChhHHHHHHHHHHhCCCcEEE
Confidence 468999999998 56788898888887765554443
No 145
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=93.22 E-value=0.064 Score=50.90 Aligned_cols=77 Identities=22% Similarity=0.099 Sum_probs=51.9
Q ss_pred CCCCCCCCCCCCChhhhHHHHhhccchhcccCeeeeeCCCCCCCCceEEEEEcCCCCCCCC---CccccccC---CcchH
Q 022555 4 KSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFE---GKPLVNIL---GKPMI 77 (295)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aiIlAaG~gsRl~---~K~l~~i~---gkpLl 77 (295)
+++|..+|-.-+ ++|++.+-.- -.+.++.+.++.--...+..++++|||.|+|++ ||.+.+++ |+.++
T Consensus 58 ~~~~~~~p~p~~-~~~~~~~~~~-----~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf 131 (477)
T KOG2388|consen 58 KPVGEIRPVPES-KSWPLKERGL-----DDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLF 131 (477)
T ss_pred CcccccCCCCcc-ccceecccCc-----hhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchh
Confidence 566777766666 7777654322 122333333333334456889999999999997 89999986 56699
Q ss_pred HHHHHHHhh
Q 022555 78 QRTWERSKL 86 (295)
Q Consensus 78 ~~~l~~l~~ 86 (295)
++..+.+..
T Consensus 132 ~~qae~il~ 140 (477)
T KOG2388|consen 132 QIQAERILK 140 (477)
T ss_pred hhhHHHHHH
Confidence 988887653
No 146
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=92.89 E-value=2.1 Score=41.01 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=57.1
Q ss_pred chHHHHHHHHhhCCC-CCeEEEECC--chH----HHHHHHHc-CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeC
Q 022555 75 PMIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 146 (295)
Q Consensus 75 pLl~~~l~~l~~~~~-i~~IvVv~~--~~~----i~~~~~~~-~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~ 146 (295)
.-+..+++.+.+... -.+|+|+.+ ++. +.++.+++ ++.++.... ..|-..++..|+... ..|.++++++
T Consensus 88 ~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~-n~Gka~AlN~gl~~a--~~d~iv~lDA 164 (444)
T PRK14583 88 LNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAH-NQGKAIALRMGAAAA--RSEYLVCIDG 164 (444)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCC-CCCHHHHHHHHHHhC--CCCEEEEECC
Confidence 456788888765422 236777764 222 22333333 345544322 223344566777765 4799999999
Q ss_pred CcccCCHHHHHHHHHHHHhCCCc
Q 022555 147 DEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 147 D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
|. ..+++.+.++++.+.++++.
T Consensus 165 D~-~~~~d~L~~lv~~~~~~~~~ 186 (444)
T PRK14583 165 DA-LLDKNAVPYLVAPLIANPRT 186 (444)
T ss_pred CC-CcCHHHHHHHHHHHHhCCCe
Confidence 99 67999999999988765543
No 147
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.59 E-value=2.6 Score=35.00 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=56.5
Q ss_pred cCCcchHHHHHHHHhhCCC-CCeEEEECC--chHHHHHHHHcC----CeEEeCCCCCCCcHHHHHHHHHHc-cccCCEEE
Q 022555 71 ILGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFG----ADVIMTSESCRNGTERCNEALQKL-EKKYDIVV 142 (295)
Q Consensus 71 i~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~i~~~~~~~~----~~v~~~~~~~~g~~~~i~~al~~~-~~~~d~vl 142 (295)
.++...|..+++.+.+... -.+|+|+-+ .+...++++++. +.++..++. .|...++..++... ....|.++
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n-~g~~~~~n~~~~~a~~~~~d~v~ 84 (202)
T cd04185 6 YNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPEN-LGGAGGFYEGVRRAYELGYDWIW 84 (202)
T ss_pred eCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCceEEEECccc-cchhhHHHHHHHHHhccCCCEEE
Confidence 3555678889998876432 236777654 344455555433 234444332 23333444444433 12468999
Q ss_pred EEeCCcccCCHHHHHHHHHHHH
Q 022555 143 NIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~~ 164 (295)
++++|. .+++..++.+++.+.
T Consensus 85 ~ld~D~-~~~~~~l~~l~~~~~ 105 (202)
T cd04185 85 LMDDDA-IPDPDALEKLLAYAD 105 (202)
T ss_pred EeCCCC-CcChHHHHHHHHHHh
Confidence 999999 678899999999887
No 148
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=92.12 E-value=4.6 Score=35.68 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=57.7
Q ss_pred ccccCCcc--hHHHHHHHHhh----CC--CCCeEEEECC--chHHH--------HHHHHc--CC--eEEeCCCCCCCcHH
Q 022555 68 LVNILGKP--MIQRTWERSKL----AT--TLDHLVVATD--DEKIA--------ECCQQF--GA--DVIMTSESCRNGTE 125 (295)
Q Consensus 68 l~~i~gkp--Ll~~~l~~l~~----~~--~i~~IvVv~~--~~~i~--------~~~~~~--~~--~v~~~~~~~~g~~~ 125 (295)
++|+.|.+ ++.-+++++.+ .. .--+|+|+-+ ++++. ++++++ +. .++.+++.......
T Consensus 4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Kag 83 (254)
T cd04191 4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKAG 83 (254)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccHH
Confidence 45666665 36666666543 11 1236766654 22221 233333 23 33444333212223
Q ss_pred HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
.+..++.......|.++++++|. .+.++.+.+++..+.++++.
T Consensus 84 ~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~~~v 126 (254)
T cd04191 84 NIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEANPRA 126 (254)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHhCCCE
Confidence 45566654322468999999999 78899999999998765543
No 149
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=92.08 E-value=3 Score=42.37 Aligned_cols=92 Identities=16% Similarity=0.307 Sum_probs=54.9
Q ss_pred HHHHHHHHhhCCCCC--eEEEECC--chHH--------HHHHHHcC--CeEEeC--CCCCCCcHHHHHHHHHHccccCCE
Q 022555 77 IQRTWERSKLATTLD--HLVVATD--DEKI--------AECCQQFG--ADVIMT--SESCRNGTERCNEALQKLEKKYDI 140 (295)
Q Consensus 77 l~~~l~~l~~~~~i~--~IvVv~~--~~~i--------~~~~~~~~--~~v~~~--~~~~~g~~~~i~~al~~~~~~~d~ 140 (295)
++.+++.+...+.-+ +|+|+.+ ++++ .+++++++ .++.++ ......-...+..+++....+.|+
T Consensus 144 L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~ey 223 (691)
T PRK05454 144 LRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRRWGGAYDY 223 (691)
T ss_pred HHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHhcCCCcCE
Confidence 555666655443322 6777776 2332 23444542 344433 222111123456666665445699
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 141 VVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 141 vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
++++++|. .++++.+.+++..+..+++.
T Consensus 224 ivvLDADs-~m~~d~L~~lv~~m~~dP~v 251 (691)
T PRK05454 224 MVVLDADS-LMSGDTLVRLVRLMEANPRA 251 (691)
T ss_pred EEEEcCCC-CCCHHHHHHHHHHHhhCcCE
Confidence 99999999 78999999999988765553
No 150
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=92.05 E-value=2.7 Score=35.83 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=54.4
Q ss_pred ccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHH--HcCCeEEeCCCCCCCcHHHHHHHHHHccc-cCCEEEE
Q 022555 70 NILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQ--QFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVN 143 (295)
Q Consensus 70 ~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~--~~~~~v~~~~~~~~g~~~~i~~al~~~~~-~~d~vlv 143 (295)
.+++. ..|..+++.+.+. ..+|+|+-+. +......+ +.++.++..+. -.|-..+...|++.... +.|++++
T Consensus 5 ~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~~-n~G~~~a~N~g~~~a~~~~~d~v~~ 81 (237)
T cd02526 5 TYNPDLSKLKELLAALAEQ--VDKVVVVDNSSGNDIELRLRLNSEKIELIHLGE-NLGIAKALNIGIKAALENGADYVLL 81 (237)
T ss_pred EecCCHHHHHHHHHHHhcc--CCEEEEEeCCCCccHHHHhhccCCcEEEEECCC-ceehHHhhhHHHHHHHhCCCCEEEE
Confidence 35667 8899999998764 5577776542 22222222 23444444332 23434455666766531 4589999
Q ss_pred EeCCcccCCHHHHHHHH
Q 022555 144 IQGDEPLIEPEIIDGVV 160 (295)
Q Consensus 144 ~~~D~Pli~~~~i~~li 160 (295)
+++|. .++++.+..++
T Consensus 82 lD~D~-~~~~~~l~~l~ 97 (237)
T cd02526 82 FDQDS-VPPPDMVEKLL 97 (237)
T ss_pred ECCCC-CcCHhHHHHHH
Confidence 99999 56899999995
No 151
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=91.88 E-value=2.5 Score=38.23 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=61.1
Q ss_pred ccCCcchHHHHHHHHhhCCCCCeEEEEC-C--chHHHHHHHHc---CCeEEeCCCCCCCcHHHHHHHHHHcccc-CCEEE
Q 022555 70 NILGKPMIQRTWERSKLATTLDHLVVAT-D--DEKIAECCQQF---GADVIMTSESCRNGTERCNEALQKLEKK-YDIVV 142 (295)
Q Consensus 70 ~i~gkpLl~~~l~~l~~~~~i~~IvVv~-~--~~~i~~~~~~~---~~~v~~~~~~~~g~~~~i~~al~~~~~~-~d~vl 142 (295)
.++....+...++.+.+....+..+|++ + .+...+..+.. ++.++...+. .|...+...+++....+ .++++
T Consensus 11 ~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~N-lG~agg~n~g~~~a~~~~~~~~l 89 (305)
T COG1216 11 TYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGEN-LGFAGGFNRGIKYALAKGDDYVL 89 (305)
T ss_pred ecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCC-ccchhhhhHHHHHHhcCCCcEEE
Confidence 4555667788888777665555555444 3 23334444443 4555555433 24444444455444212 23799
Q ss_pred EEeCCcccCCHHHHHHHHHHHHhCCCcEEEE
Q 022555 143 NIQGDEPLIEPEIIDGVVKALQAAPDAVFST 173 (295)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~~~~~d~~v~v 173 (295)
+++-|. .+++..|+++++.+.+.+...+..
T Consensus 90 ~LN~D~-~~~~~~l~~ll~~~~~~~~~~~~~ 119 (305)
T COG1216 90 LLNPDT-VVEPDLLEELLKAAEEDPAAGVVG 119 (305)
T ss_pred EEcCCe-eeChhHHHHHHHHHHhCCCCeEee
Confidence 999996 578999999999998765544433
No 152
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.66 E-value=2.6 Score=39.77 Aligned_cols=103 Identities=21% Similarity=0.320 Sum_probs=67.2
Q ss_pred CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCC-eEEEECC--chHHHHHHHHcC------CeEEeCCC
Q 022555 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQFG------ADVIMTSE 118 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~-~IvVv~~--~~~i~~~~~~~~------~~v~~~~~ 118 (295)
.++..+|++-+.... .++.+++++.+...-+ +|+|+.+ .++..+.+++.+ +.+...+.
T Consensus 54 p~vsviiP~ynE~~~-------------~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 120 (439)
T COG1215 54 PKVSVIIPAYNEEPE-------------VLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEK 120 (439)
T ss_pred CceEEEEecCCCchh-------------hHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccc
Confidence 456666666544322 7899999998765332 7888876 455555554332 22221111
Q ss_pred CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
...+-...+..|+.... .|.++++++|. ..+++.+.+++..+...
T Consensus 121 ~~~gK~~al~~~l~~~~--~d~V~~~DaD~-~~~~d~l~~~~~~f~~~ 165 (439)
T COG1215 121 KNGGKAGALNNGLKRAK--GDVVVILDADT-VPEPDALRELVSPFEDP 165 (439)
T ss_pred cCccchHHHHHHHhhcC--CCEEEEEcCCC-CCChhHHHHHHhhhcCC
Confidence 22222456778888773 79999999999 57899999999998764
No 153
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=91.53 E-value=3.9 Score=37.66 Aligned_cols=51 Identities=4% Similarity=0.055 Sum_probs=35.2
Q ss_pred CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 111 ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 111 ~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
+.++..+.. .|-..++..|+... ..|.++++++|. ..+++.+..+++.+.+
T Consensus 139 i~vi~~~~N-~G~~~A~~~Gi~~a--~gd~I~~~DaD~-~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 139 IRLLSLLRN-KGKGGAVRIGMLAS--RGKYILMVDADG-ATDIDDFDKLEDIMLK 189 (333)
T ss_pred EEEEEcCCC-CChHHHHHHHHHHc--cCCEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 444433322 24345577788776 468999999998 4678899999988753
No 154
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=91.46 E-value=3.7 Score=36.34 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=57.7
Q ss_pred chHHHHHHHHhhCCCCCeEEEECCc----hHHHHHHHHc-CCeEEeCCCCCCCcHHHHHHHHHHcc-ccCCEEEEEeCCc
Q 022555 75 PMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDE 148 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i~~IvVv~~~----~~i~~~~~~~-~~~v~~~~~~~~g~~~~i~~al~~~~-~~~d~vlv~~~D~ 148 (295)
..|..+++.+.+. ..+|+||=+. +.++...++. .+.++..++ -.|...+...|++... .+.|++++++.|.
T Consensus 8 ~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~-N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~ 84 (281)
T TIGR01556 8 EHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGD-NQGIAGAQNQGLDASFRRGVQGVLLLDQDS 84 (281)
T ss_pred HHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCC-CcchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5778888888753 5677777653 2444444432 355554432 2344556666666542 2469999999999
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 022555 149 PLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 149 Pli~~~~i~~li~~~~~~ 166 (295)
.++++.+..+++.+.+.
T Consensus 85 -~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 85 -RPGNAFLAAQWKLLSAE 101 (281)
T ss_pred -CCCHHHHHHHHHHHHhc
Confidence 56789999999988754
No 155
>PRK10073 putative glycosyl transferase; Provisional
Probab=90.48 E-value=5.4 Score=36.60 Aligned_cols=88 Identities=9% Similarity=0.094 Sum_probs=54.3
Q ss_pred cchHHHHHHHHhhCCCC-CeEEEECC--chHH----HHHHHHc-CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEe
Q 022555 74 KPMIQRTWERSKLATTL-DHLVVATD--DEKI----AECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ 145 (295)
Q Consensus 74 kpLl~~~l~~l~~~~~i-~~IvVv~~--~~~i----~~~~~~~-~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~ 145 (295)
...|..+++.+.+.... -+|+||-+ .+.. .+++++. .+.++.. .-.|...+.-.|++.. ..+++++++
T Consensus 18 ~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~~--~n~G~~~arN~gl~~a--~g~yi~flD 93 (328)
T PRK10073 18 GKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLHQ--ANAGVSVARNTGLAVA--TGKYVAFPD 93 (328)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEC--CCCChHHHHHHHHHhC--CCCEEEEEC
Confidence 45678888888754322 26777654 2222 2333333 2444332 2223334456778776 468999999
Q ss_pred CCcccCCHHHHHHHHHHHHhC
Q 022555 146 GDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 146 ~D~Pli~~~~i~~li~~~~~~ 166 (295)
+|. ++.++.++.+++.+.++
T Consensus 94 ~DD-~~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 94 ADD-VVYPTMYETLMTMALED 113 (328)
T ss_pred CCC-ccChhHHHHHHHHHHhC
Confidence 999 57899999999887653
No 156
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=89.99 E-value=5.1 Score=33.26 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=55.3
Q ss_pred cCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHH-H---cCCeEEeCCC-CC-CCcHHHHHHHHHHccc------
Q 022555 71 ILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQ-Q---FGADVIMTSE-SC-RNGTERCNEALQKLEK------ 136 (295)
Q Consensus 71 i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~-~---~~~~v~~~~~-~~-~g~~~~i~~al~~~~~------ 136 (295)
.+....|..+++.+.+...-.+|+|+-+ .+...++++ . .++.++..+. .. .|-..++..|++.+..
T Consensus 6 ~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g 85 (191)
T cd06436 6 LNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEG 85 (191)
T ss_pred cccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccc
Confidence 3556788999998876432336777664 333344443 2 1344443321 11 2333456666665421
Q ss_pred ---cCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555 137 ---KYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 137 ---~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (295)
+.+.++++++|. .+++..+..+...+.
T Consensus 86 ~~~~~d~v~~~DaD~-~~~~~~l~~~~~~~~ 115 (191)
T cd06436 86 ADPERVIIAVIDADG-RLDPNALEAVAPYFS 115 (191)
T ss_pred cCCCccEEEEECCCC-CcCHhHHHHHHHhhc
Confidence 136899999999 578899999776664
No 157
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.69 E-value=7.2 Score=32.64 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=54.5
Q ss_pred CcchHHHHHHHHhhCC-CCCeEEEECC--chHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcc
Q 022555 73 GKPMIQRTWERSKLAT-TLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP 149 (295)
Q Consensus 73 gkpLl~~~l~~l~~~~-~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~P 149 (295)
..+.|..+++.+.+.. ...+|+|+-+ .+...+.+++.++.++..+ .|.......|+... ..+.++++++|.
T Consensus 10 ~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~~~~~~~~~---~g~~~a~n~g~~~a--~~~~i~~~D~D~- 83 (221)
T cd02522 10 EAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSAGVVVISSP---KGRARQMNAGAAAA--RGDWLLFLHADT- 83 (221)
T ss_pred cHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcCCeEEEeCC---cCHHHHHHHHHHhc--cCCEEEEEcCCC-
Confidence 3456788888877543 2346777754 2444455555444433322 23333445567666 368999999998
Q ss_pred cCCHHHHHHHHHHHHhC
Q 022555 150 LIEPEIIDGVVKALQAA 166 (295)
Q Consensus 150 li~~~~i~~li~~~~~~ 166 (295)
.+++..+++++..+.+.
T Consensus 84 ~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 84 RLPPDWDAAIIETLRAD 100 (221)
T ss_pred CCChhHHHHHHHHhhcC
Confidence 66899999987766543
No 158
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=89.68 E-value=7.8 Score=31.29 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=52.2
Q ss_pred CCcchHHHHHHHHhhCCC-CCeEEEECC--chHHHHHHHHc----CCeE--EeCCCCCCCcHHHHHHHHHHccccCCEEE
Q 022555 72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQF----GADV--IMTSESCRNGTERCNEALQKLEKKYDIVV 142 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~i~~~~~~~----~~~v--~~~~~~~~g~~~~i~~al~~~~~~~d~vl 142 (295)
+....|..+++.+.+... -.+|+|+-+ .+...++++++ +.++ +..+....+.......|++.. ..+.++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a--~g~~i~ 84 (182)
T cd06420 7 NRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA--KGDYLI 84 (182)
T ss_pred CChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh--cCCEEE
Confidence 334578889998875432 336777665 23333333322 2232 222211111223345666665 468999
Q ss_pred EEeCCcccCCHHHHHHHHHHH
Q 022555 143 NIQGDEPLIEPEIIDGVVKAL 163 (295)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~ 163 (295)
++++|. .+++..+.++++.+
T Consensus 85 ~lD~D~-~~~~~~l~~~~~~~ 104 (182)
T cd06420 85 FIDGDC-IPHPDFIADHIELA 104 (182)
T ss_pred EEcCCc-ccCHHHHHHHHHHh
Confidence 999999 66888899998876
No 159
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=89.60 E-value=6.1 Score=33.68 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=49.8
Q ss_pred cchHHHHHHHHhhCCCC-C--eEEEECC-chH----HHHHHHH---cCCeE--EeCCCCCCCc-HHHHHHHHHHccccCC
Q 022555 74 KPMIQRTWERSKLATTL-D--HLVVATD-DEK----IAECCQQ---FGADV--IMTSESCRNG-TERCNEALQKLEKKYD 139 (295)
Q Consensus 74 kpLl~~~l~~l~~~~~i-~--~IvVv~~-~~~----i~~~~~~---~~~~v--~~~~~~~~g~-~~~i~~al~~~~~~~d 139 (295)
...|..+|+.+.+.... + +|+|+-+ .+. +++..++ .+.++ +... ...|. ..++..|+... ..+
T Consensus 13 ~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~-~~~G~k~~a~n~g~~~a--~~~ 89 (232)
T cd06437 13 KYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRA-DRTGYKAGALAEGMKVA--KGE 89 (232)
T ss_pred HHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECC-CCCCCchHHHHHHHHhC--CCC
Confidence 35677888887653322 1 4555443 222 2222222 13343 2222 22343 34566778776 478
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHH
Q 022555 140 IVVNIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 140 ~vlv~~~D~Pli~~~~i~~li~~~~ 164 (295)
+++++++|. .++++.++.+...+.
T Consensus 90 ~i~~~DaD~-~~~~~~l~~~~~~~~ 113 (232)
T cd06437 90 YVAIFDADF-VPPPDFLQKTPPYFA 113 (232)
T ss_pred EEEEEcCCC-CCChHHHHHhhhhhc
Confidence 999999999 568999999666553
No 160
>PRK10018 putative glycosyl transferase; Provisional
Probab=87.01 E-value=13 Score=33.31 Aligned_cols=90 Identities=11% Similarity=0.114 Sum_probs=54.6
Q ss_pred CCcchHHHHHHHHhhCCCC-CeEEEECC-c---hHHHHHHHHc---CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555 72 LGKPMIQRTWERSKLATTL-DHLVVATD-D---EKIAECCQQF---GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~i-~~IvVv~~-~---~~i~~~~~~~---~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv 143 (295)
+....|..+++.+.+...- -+|+|+-+ + +.+.++++++ .+.++..+ .-.|...+.-.|+... ..+++++
T Consensus 15 N~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~-~n~G~~~a~N~gi~~a--~g~~I~~ 91 (279)
T PRK10018 15 NRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHND-INSGACAVRNQAIMLA--QGEYITG 91 (279)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECC-CCCCHHHHHHHHHHHc--CCCEEEE
Confidence 3345567888877653322 26666654 1 3344555432 23334332 2223344556677776 4789999
Q ss_pred EeCCcccCCHHHHHHHHHHHHh
Q 022555 144 IQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~ 165 (295)
+++|. ...++.+..+++.+.+
T Consensus 92 lDaDD-~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 92 IDDDD-EWTPNRLSVFLAHKQQ 112 (279)
T ss_pred ECCCC-CCCccHHHHHHHHHHh
Confidence 99999 5578889999987765
No 161
>PRK10063 putative glycosyl transferase; Provisional
Probab=86.98 E-value=10 Score=33.14 Aligned_cols=87 Identities=8% Similarity=0.095 Sum_probs=46.9
Q ss_pred CCcchHHHHHHHHhhC---CCC-CeEEEECC--chHHHHHHHHc----CCeEEeCCCCCCCcHHHHHHHHHHccccCCEE
Q 022555 72 LGKPMIQRTWERSKLA---TTL-DHLVVATD--DEKIAECCQQF----GADVIMTSESCRNGTERCNEALQKLEKKYDIV 141 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~---~~i-~~IvVv~~--~~~i~~~~~~~----~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~v 141 (295)
+....|..+++.+.+. ... -+|+|+-+ .+...++++++ .+.++.. + ..|...++..|+... ..+++
T Consensus 11 N~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i~~-~-~~G~~~A~N~Gi~~a--~g~~v 86 (248)
T PRK10063 11 RNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVSE-P-DNGIYDAMNKGIAMA--QGRFA 86 (248)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEEEC-C-CCCHHHHHHHHHHHc--CCCEE
Confidence 3344567777776421 112 25666643 34444555543 2444432 2 234445677788876 46899
Q ss_pred EEEeCCcccCCHHHHHHHHHHHH
Q 022555 142 VNIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 142 lv~~~D~Pli~~~~i~~li~~~~ 164 (295)
+++++|.-+ .+..++ ++..+.
T Consensus 87 ~~ld~DD~~-~~~~~~-~~~~~~ 107 (248)
T PRK10063 87 LFLNSGDIF-HQDAAN-FVRQLK 107 (248)
T ss_pred EEEeCCccc-CcCHHH-HHHHHH
Confidence 999987744 454443 344443
No 162
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=84.64 E-value=7.2 Score=28.44 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=46.0
Q ss_pred cchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc-CCeEEeCCCCCCCc-H-HHHHHHHHHccccCCEEEEEeCCc
Q 022555 74 KPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-GADVIMTSESCRNG-T-ERCNEALQKLEKKYDIVVNIQGDE 148 (295)
Q Consensus 74 kpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~-~~~v~~~~~~~~g~-~-~~i~~al~~~~~~~d~vlv~~~D~ 148 (295)
.++|...+...... ++++++|..+ .+...++++++ ++.++..+...... . ....+++..-..+.++++.+++|-
T Consensus 4 ~~~L~~wl~~~~~l-G~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DE 82 (97)
T PF13704_consen 4 ADYLPEWLAHHLAL-GVDHIYIYDDGSTDGTREILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADE 82 (97)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEECCCCccHHHHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeE
Confidence 45777777777776 5999999886 34455666554 45554433222221 1 123333332222579999999998
Q ss_pred ccCCH
Q 022555 149 PLIEP 153 (295)
Q Consensus 149 Pli~~ 153 (295)
-+..+
T Consensus 83 fl~~~ 87 (97)
T PF13704_consen 83 FLVPP 87 (97)
T ss_pred EEecC
Confidence 54433
No 163
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.29 E-value=15 Score=30.79 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=56.7
Q ss_pred cchHHHHHHHHhhCCCCCeEEEECC----chHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHH-HHccccCCEEEEEeCCc
Q 022555 74 KPMIQRTWERSKLATTLDHLVVATD----DEKIAECCQQFGADVIMTSESCRNGTERCNEAL-QKLEKKYDIVVNIQGDE 148 (295)
Q Consensus 74 kpLl~~~l~~l~~~~~i~~IvVv~~----~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al-~~~~~~~d~vlv~~~D~ 148 (295)
+-|++|+++...+.+...+.+.-.+ .....++..-.|...++++... ...+++..+. ..+. ....|+++.-|+
T Consensus 37 r~lle~tl~~v~~~~~~~~a~l~~~d~d~~~dlq~m~~~Lg~~lvyqpqGd-d~gdRlars~~~a~~-~~~~VliIg~Dc 114 (211)
T COG3222 37 RQLLEDTLDAVAAAPVTARAVLLIGDLDSGGDLQEMRRWLGSFLVYQPQGD-DLGDRLARSHVDAFD-GSYPVLIIGMDC 114 (211)
T ss_pred HHHHHHHHHHHHhhhhhhcceeeeecccccccHHHHHHHhhhheeecccCC-CHHHHHHHHHHHHhc-CCCcEEEEecCC
Confidence 4589999998877653333333332 2233344444566667765432 2234554333 2232 236799999999
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 022555 149 PLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 149 Pli~~~~i~~li~~~~~~ 166 (295)
|-++.+.+.....++-+.
T Consensus 115 P~lt~elLa~a~taL~~~ 132 (211)
T COG3222 115 PGLTAELLADAFTALLQI 132 (211)
T ss_pred CccCHHHHHHHHHHHhcC
Confidence 999999999988887654
No 164
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=82.56 E-value=2.5 Score=35.79 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=48.5
Q ss_pred cchHHHHHHHHhhCCC-CCeEEEECC--c----hHHHHHHHHcC---CeEEeCCCCCCC--cH-HHHHHHHHHccccCCE
Q 022555 74 KPMIQRTWERSKLATT-LDHLVVATD--D----EKIAECCQQFG---ADVIMTSESCRN--GT-ERCNEALQKLEKKYDI 140 (295)
Q Consensus 74 kpLl~~~l~~l~~~~~-i~~IvVv~~--~----~~i~~~~~~~~---~~v~~~~~~~~g--~~-~~i~~al~~~~~~~d~ 140 (295)
.+.|..+++.+.+... --+|+|+.+ + +.+.+++..++ +.++..+.. .+ +. ..+..+++.. ..|.
T Consensus 13 ~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~-~g~~~k~~a~n~~~~~~--~~d~ 89 (228)
T PF13641_consen 13 DDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRN-PGPGGKARALNEALAAA--RGDY 89 (228)
T ss_dssp HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE-----HHHHHHHHHHHHHHHH-----SE
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCC-CCcchHHHHHHHHHHhc--CCCE
Confidence 3577788888875322 125566553 2 23444554443 344443221 12 11 2356777766 4789
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHH
Q 022555 141 VVNIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 141 vlv~~~D~Pli~~~~i~~li~~~~ 164 (295)
++++++|. .+++..++.+++.+.
T Consensus 90 i~~lD~D~-~~~p~~l~~~~~~~~ 112 (228)
T PF13641_consen 90 ILFLDDDT-VLDPDWLERLLAAFA 112 (228)
T ss_dssp EEEE-SSE-EE-CHHHHHHHHHHH
T ss_pred EEEECCCc-EECHHHHHHHHHHHH
Confidence 99999999 569999999999994
No 165
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=78.66 E-value=15 Score=35.99 Aligned_cols=94 Identities=18% Similarity=0.410 Sum_probs=56.4
Q ss_pred HHHHHHHHhhCCCCC--eEEEECC--chHHH--------HHHHHcC--CeEEeCCC--CCCCcHHHHHHHHHHccccCCE
Q 022555 77 IQRTWERSKLATTLD--HLVVATD--DEKIA--------ECCQQFG--ADVIMTSE--SCRNGTERCNEALQKLEKKYDI 140 (295)
Q Consensus 77 l~~~l~~l~~~~~i~--~IvVv~~--~~~i~--------~~~~~~~--~~v~~~~~--~~~g~~~~i~~al~~~~~~~d~ 140 (295)
++-+.+.+++.+..+ +++|.++ ++++. .++++.+ .+++++-. ....-...+..-.+..+..+++
T Consensus 164 LrA~~eSla~Tg~~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr~n~~RKaGNIaDfcrRwG~~Y~~ 243 (736)
T COG2943 164 LRATYESLAATGHAEHFDFFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFYRRRRRNVKRKAGNIADFCRRWGSAYSY 243 (736)
T ss_pred HHHHHHHHHhhCCcccceEEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceeeehHhhhhcccccCHHHHHHHhCcccce
Confidence 456666776655333 4666665 34432 3445544 45665421 1111111233334444446789
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555 141 VVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (295)
Q Consensus 141 vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v 171 (295)
.+|+++|. ..+.+.+-++++..+.++++.+
T Consensus 244 MlVLDADS-vMtgd~lvrLv~~ME~~P~aGl 273 (736)
T COG2943 244 MLVLDADS-VMTGDCLVRLVRLMEANPDAGL 273 (736)
T ss_pred EEEeeccc-ccCchHHHHHHHHHhhCCCCce
Confidence 99999999 6889999999999988887643
No 166
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=77.66 E-value=32 Score=31.08 Aligned_cols=96 Identities=6% Similarity=0.048 Sum_probs=57.0
Q ss_pred CCCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCchHHHHHHHHcCCeEEeCCCCCC-
Q 022555 44 KNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCR- 121 (295)
Q Consensus 44 ~~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~- 121 (295)
....|| ..|++-|.|+=| +..+++.+.-. .++-+.|+++.+...+.++++|+++..-+....
T Consensus 90 ~~~~~k--iavl~Sg~g~nl--------------~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~ 153 (289)
T PRK13010 90 DGQRPK--VVIMVSKFDHCL--------------NDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTPDT 153 (289)
T ss_pred CCCCeE--EEEEEeCCCccH--------------HHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCCccc
Confidence 334455 678888888865 45555554322 245566667777778888889998754221111
Q ss_pred -C-cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 122 -N-GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 122 -g-~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
. ....+...++.. +.| ++++.+=+..++++.++.
T Consensus 154 ~~~~~~~~~~~l~~~--~~D-livlagym~il~~~~l~~ 189 (289)
T PRK13010 154 KAQQEAQILDLIETS--GAE-LVVLARYMQVLSDDLSRK 189 (289)
T ss_pred ccchHHHHHHHHHHh--CCC-EEEEehhhhhCCHHHHhh
Confidence 1 122355566655 344 667777777777766653
No 167
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=75.98 E-value=58 Score=30.09 Aligned_cols=102 Identities=20% Similarity=0.310 Sum_probs=58.0
Q ss_pred cCCcc-hHHHHHHHHhhCC-C--CCeEEEECC--chHHHHHHHHc--CCeEEeCCCC--CC-C------cHHHH----HH
Q 022555 71 ILGKP-MIQRTWERSKLAT-T--LDHLVVATD--DEKIAECCQQF--GADVIMTSES--CR-N------GTERC----NE 129 (295)
Q Consensus 71 i~gkp-Ll~~~l~~l~~~~-~--i~~IvVv~~--~~~i~~~~~~~--~~~v~~~~~~--~~-g------~~~~i----~~ 129 (295)
..++| -+.++++.|.+.. . -.+|+|+.+ .++..+.++.+ .++.+..+.. .. + +..++ ..
T Consensus 8 ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~hyk~ 87 (334)
T cd02514 8 ACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIARHYKW 87 (334)
T ss_pred ecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhhHHHHHHHH
Confidence 35677 6899999998752 2 236777765 34455666555 4554432211 10 1 11122 23
Q ss_pred HHHHccc--cCCEEEEEeCCcccCCHHHH---HHHHHHHHhCCCcEEEEe
Q 022555 130 ALQKLEK--KYDIVVNIQGDEPLIEPEII---DGVVKALQAAPDAVFSTA 174 (295)
Q Consensus 130 al~~~~~--~~d~vlv~~~D~Pli~~~~i---~~li~~~~~~~d~~v~v~ 174 (295)
|+..+-. ..+.++++..|+ .+.++.+ +.+++.+.++ ..+.++.
T Consensus 88 aln~vF~~~~~~~vIILEDDl-~~sPdFf~yf~~~l~~y~~D-~~v~~IS 135 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDL-DIAPDFFSYFQATLPLLEED-PSLWCIS 135 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCC-ccCHhHHHHHHHHHHHHhcC-CCEEEEE
Confidence 5554421 368999999999 7888855 5555555544 3455553
No 168
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=75.73 E-value=49 Score=28.10 Aligned_cols=89 Identities=13% Similarity=0.260 Sum_probs=53.1
Q ss_pred chHHHHHHHHhhCCCCC-eEEEECC--c----hHHHHHHHHcCC-eEEeCCCCCC-CcHHHHHHHHHHccccCCEEEEEe
Q 022555 75 PMIQRTWERSKLATTLD-HLVVATD--D----EKIAECCQQFGA-DVIMTSESCR-NGTERCNEALQKLEKKYDIVVNIQ 145 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i~-~IvVv~~--~----~~i~~~~~~~~~-~v~~~~~~~~-g~~~~i~~al~~~~~~~d~vlv~~ 145 (295)
|++.|.+.......+.+ +|+|+-+ . +..+++.+.++- ++...+.... |-.++..+++.+. ..+.+++++
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a--~g~fiviMD 96 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHA--TGDFIVIMD 96 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhc--cCCeEEEEe
Confidence 67777776654322333 6666654 1 222233333442 3333322222 3335678899887 468999999
Q ss_pred CCcccCCHHHHHHHHHHHHhC
Q 022555 146 GDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 146 ~D~Pli~~~~i~~li~~~~~~ 166 (295)
+|.- =.|..+-++++..+++
T Consensus 97 aDls-HhPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 97 ADLS-HHPKFIPEFIRLQKEG 116 (238)
T ss_pred CccC-CCchhHHHHHHHhhcc
Confidence 9974 4788899999877664
No 169
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=74.91 E-value=27 Score=30.21 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=26.7
Q ss_pred cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
..|.++++++|. .+++..+..+++.+..+++.
T Consensus 73 ~~e~i~~~DaD~-~~~~~~l~~l~~~~~~~p~v 104 (244)
T cd04190 73 DPEFILLVDADT-KFDPDSIVQLYKAMDKDPEI 104 (244)
T ss_pred CCCEEEEECCCC-cCCHhHHHHHHHHHHhCCCE
Confidence 478999999999 56899999999988665543
No 170
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=68.90 E-value=54 Score=25.70 Aligned_cols=99 Identities=22% Similarity=0.247 Sum_probs=54.4
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCC-eEEEECC--chHHHHHHHHcCC---eEE-eCCCC
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQFGA---DVI-MTSES 119 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~-~IvVv~~--~~~i~~~~~~~~~---~v~-~~~~~ 119 (295)
+|+++.||++-... ..|..+++.+.+....+ +|+|+-+ .+...+.++++.. .+. .....
T Consensus 2 ~~~~siiip~~n~~--------------~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~ 67 (291)
T COG0463 2 MPKVSVVIPTYNEE--------------EYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINER 67 (291)
T ss_pred CccEEEEEeccchh--------------hhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeeccc
Confidence 56777777765443 45577777766543332 5666554 3443444444332 122 22122
Q ss_pred CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHH
Q 022555 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (295)
Q Consensus 120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~ 163 (295)
..|...+...++.... .+.++++++|.- . +..+..+.+..
T Consensus 68 ~~g~~~~~~~~~~~~~--~~~~~~~d~d~~-~-~~~~~~~~~~~ 107 (291)
T COG0463 68 NGGLGAARNAGLEYAR--GDYIVFLDADDQ-H-PPELIPLVAAG 107 (291)
T ss_pred CCChHHHHHhhHHhcc--CCEEEEEccCCC-C-CHHHHHHHHHh
Confidence 2333445667777764 489999999995 4 44554444433
No 171
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=68.85 E-value=44 Score=28.40 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=45.9
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEE-EECCc--hHHHHHHHHcCCeEEe-CCCCCCC
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLV-VATDD--EKIAECCQQFGADVIM-TSESCRN 122 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~Iv-Vv~~~--~~i~~~~~~~~~~v~~-~~~~~~g 122 (295)
||| ..|+|.|.|+=+ +..++.+.+....-.|+ |+++. ....+++++.|++++. .+....+
T Consensus 1 m~k--i~vl~sg~gs~~--------------~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~ 64 (200)
T PRK05647 1 MKR--IVVLASGNGSNL--------------QAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPS 64 (200)
T ss_pred Cce--EEEEEcCCChhH--------------HHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCc
Confidence 455 667777777744 44455554432112344 44553 3456678888988754 2222211
Q ss_pred c---HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHH
Q 022555 123 G---TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (295)
Q Consensus 123 ~---~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~ 157 (295)
. ...+...++.. +.|. +++.+=..+++++.++
T Consensus 65 ~~~~~~~~~~~l~~~--~~D~-iv~~~~~~ii~~~~l~ 99 (200)
T PRK05647 65 REAFDAALVEALDAY--QPDL-VVLAGFMRILGPTFVS 99 (200)
T ss_pred hhHhHHHHHHHHHHh--CcCE-EEhHHhhhhCCHHHHh
Confidence 1 12344445554 3453 4444444466665543
No 172
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=66.08 E-value=8.3 Score=33.99 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=57.8
Q ss_pred chHHHHHHHHhhCCCCCeEEEECCchH-H--HHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccC
Q 022555 75 PMIQRTWERSKLATTLDHLVVATDDEK-I--AECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLI 151 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i~~IvVv~~~~~-i--~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli 151 (295)
..|..++..+.+++.+.+|+|+=+.+. . .......++++.+.... ...+..-......+ ..+.||.++=|. .+
T Consensus 13 ~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~-~nsLnnRF~p~~~i--~T~AVl~~DDDv-~~ 88 (247)
T PF09258_consen 13 DLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSS-RNSLNNRFLPDPEI--ETDAVLSLDDDV-ML 88 (247)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEES-SHHGGGGGS--TT----SSEEEEEETTE-EE
T ss_pred HHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecC-CccHHhcCcCcccc--CcceEEEecCCc-cc
Confidence 688899999999999999999875311 1 11112234555332111 11111111222334 468999999997 67
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEee
Q 022555 152 EPEIIDGVVKALQAAPDAVFSTAV 175 (295)
Q Consensus 152 ~~~~i~~li~~~~~~~d~~v~v~~ 175 (295)
+.+.|+...+..++.++-+++...
T Consensus 89 ~~~~l~faF~~W~~~pdrlVGf~~ 112 (247)
T PF09258_consen 89 SCDELEFAFQVWREFPDRLVGFPP 112 (247)
T ss_dssp -HHHHHHHHHHHCCSTTSEEES-E
T ss_pred CHHHHHHHHHHHHhChhheeCCcc
Confidence 899999999999988999888754
No 173
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=63.48 E-value=75 Score=28.65 Aligned_cols=92 Identities=10% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCC---
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRN--- 122 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g--- 122 (295)
.|+ ..|++-|.|+=| +..+++.+.-. ..+-+.|+++.+.+..+++++|++++.-+.....
T Consensus 89 ~~r--i~vl~Sg~g~nl--------------~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~ 152 (286)
T PRK13011 89 RPK--VLIMVSKFDHCL--------------NDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQ 152 (286)
T ss_pred Cce--EEEEEcCCcccH--------------HHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCchhh
Confidence 444 678888877644 55566554322 2444555677777888888899987542211111
Q ss_pred cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHH
Q 022555 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (295)
Q Consensus 123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~ 157 (295)
....+...++.. +.| ++++.+=+-+++++.++
T Consensus 153 ~~~~~~~~l~~~--~~D-livlagy~~il~~~~l~ 184 (286)
T PRK13011 153 QEAQVLDVVEES--GAE-LVVLARYMQVLSPELCR 184 (286)
T ss_pred hHHHHHHHHHHh--CcC-EEEEeChhhhCCHHHHh
Confidence 112244555554 345 55555666677775554
No 174
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=61.38 E-value=95 Score=27.92 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=52.4
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCc---HHHH
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRNG---TERC 127 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~---~~~i 127 (295)
..||+-|.|+=| +..+++.+.-. .++-+.|+++.+....+++++|++++..+.....- ...+
T Consensus 87 i~vl~Sg~g~nl--------------~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~ 152 (280)
T TIGR00655 87 VAILVSKEDHCL--------------GDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQ 152 (280)
T ss_pred EEEEEcCCChhH--------------HHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence 678888888865 55555554321 24455666777777788888999886543211111 1234
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHH
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~ 157 (295)
...++.. +.| ++++.+=+..+++..++
T Consensus 153 ~~~l~~~--~~D-livlagym~il~~~~l~ 179 (280)
T TIGR00655 153 LELLKQY--QVD-LVVLAKYMQILSPDFVK 179 (280)
T ss_pred HHHHHHh--CCC-EEEEeCchhhCCHHHHh
Confidence 4445544 244 66667766677765554
No 175
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=61.34 E-value=48 Score=28.47 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=31.5
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
+.....-.|++.. +.+.+++++-|.-+.++..+.++++.+.++++.
T Consensus 41 s~~~~yN~a~~~a--~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~ 86 (217)
T PF13712_consen 41 SMAAAYNEAMEKA--KAKYLVFLHQDVFIINENWLEDILEIFEEDPNI 86 (217)
T ss_dssp -TTTHHHHHGGG----SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTE
T ss_pred CHHHHHHHHHHhC--CCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCc
Confidence 3334445566654 468999999999888889999999999665553
No 176
>TIGR03065 srtB_sig_QVPTGV sortase B signal domain, QVPTGV class. This model represents a boutique (unusual) sorting signal, recognized by a member of the sortase SrtB family rather than by the housekeeping sortase, SrtA.
Probab=57.67 E-value=4.7 Score=22.90 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=11.0
Q ss_pred cccCeeeeeCCCC
Q 022555 32 VAVGARAYLGRSK 44 (295)
Q Consensus 32 ~~~~~~~~~~~~~ 44 (295)
+++||.+|+.+++
T Consensus 19 va~gg~~y~tk~k 31 (32)
T TIGR03065 19 VAIGGAIYFTKKK 31 (32)
T ss_pred EEeccEEEEEEcc
Confidence 8899999987765
No 177
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=57.40 E-value=1.1e+02 Score=25.36 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=56.1
Q ss_pred eEEEECCchHH-----HHHHHHcCCeEEeCCCCCCCcHH--HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555 92 HLVVATDDEKI-----AECCQQFGADVIMTSESCRNGTE--RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 92 ~IvVv~~~~~i-----~~~~~~~~~~v~~~~~~~~g~~~--~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (295)
+|+++|+.+++ +..+++.|.+++-....-+...+ -+...+.+. ..|+|+++-=|.=+.....=+..++...
T Consensus 1 kVIlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a--~~DPV~VMfDD~G~~g~G~GE~Al~~v~ 78 (180)
T PF14097_consen 1 KVILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQA--PHDPVLVMFDDKGFIGEGPGEQALEYVA 78 (180)
T ss_pred CEEEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhC--CCCCEEEEEeCCCCCCCCccHHHHHHHH
Confidence 47888874433 34556788888754322122221 244455555 4688999988887765544455555555
Q ss_pred hCCCc----EEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555 165 AAPDA----VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI 200 (295)
Q Consensus 165 ~~~d~----~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~ 200 (295)
.+++. ++++. ++....++ ..+.+-+|.+|+++
T Consensus 79 ~h~~IeVLG~iAVA-SnT~~~~g---~~VD~sidr~G~~v 114 (180)
T PF14097_consen 79 NHPDIEVLGAIAVA-SNTHGAEG---TKVDVSIDRDGEIV 114 (180)
T ss_pred cCCCceEEEEEEEE-ecCCCCCc---eEeEEEEcCCCeEe
Confidence 55442 23332 23221121 12333467888876
No 178
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=55.14 E-value=1.2e+02 Score=29.76 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=49.8
Q ss_pred CCcchHHHHHHHH-hhCCCC-CeEEEECC--c-h---HHHHHHHHcC-CeEEeCCCCCCCc-HHHHHHHHHHc---c---
Q 022555 72 LGKPMIQRTWERS-KLATTL-DHLVVATD--D-E---KIAECCQQFG-ADVIMTSESCRNG-TERCNEALQKL---E--- 135 (295)
Q Consensus 72 ~gkpLl~~~l~~l-~~~~~i-~~IvVv~~--~-~---~i~~~~~~~~-~~v~~~~~~~~g~-~~~i~~al~~~---~--- 135 (295)
++...|..+++.+ .+...- -+|+|+++ + + .+++++.++. +.++..+.....+ ...+-.+++.+ +
T Consensus 76 NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~ 155 (504)
T PRK14716 76 READVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERER 155 (504)
T ss_pred CchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence 4556888888864 343221 26777763 2 2 3334444443 4443332221122 23454555443 1
Q ss_pred -ccCCEEEEEeCCcccCCHHHHHHHHHH
Q 022555 136 -KKYDIVVNIQGDEPLIEPEIIDGVVKA 162 (295)
Q Consensus 136 -~~~d~vlv~~~D~Pli~~~~i~~li~~ 162 (295)
...|.++++++|. .+++..++.+...
T Consensus 156 G~~~d~vvi~DAD~-~v~Pd~Lr~~~~~ 182 (504)
T PRK14716 156 GIRFAIIVLHDAED-VIHPLELRLYNYL 182 (504)
T ss_pred CCCcCEEEEEcCCC-CcCccHHHHHHhh
Confidence 1248999999999 6888888866443
No 179
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.51 E-value=38 Score=33.48 Aligned_cols=98 Identities=15% Similarity=0.278 Sum_probs=56.1
Q ss_pred CCCCC---CccccccC----CcchHHHHHHHHhhCC-------CCCeEEEECCchHHHHHHHH----cCCeEEeCCCCCC
Q 022555 60 SSRFE---GKPLVNIL----GKPMIQRTWERSKLAT-------TLDHLVVATDDEKIAECCQQ----FGADVIMTSESCR 121 (295)
Q Consensus 60 gsRl~---~K~l~~i~----gkpLl~~~l~~l~~~~-------~i~~IvVv~~~~~i~~~~~~----~~~~v~~~~~~~~ 121 (295)
=+|+| ||-.+.++ ||+||.+.+.-=...| .+|+++|-++...++++... ..+-+++++-+.-
T Consensus 329 ftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 329 FTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred hhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 35665 67777665 8999999886433222 47899999998778776542 2333344332222
Q ss_pred CcH---HH-------HHHHHHHcc--ccCCEEEEEeCCcccCCHHHHHHHH
Q 022555 122 NGT---ER-------CNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVV 160 (295)
Q Consensus 122 g~~---~~-------i~~al~~~~--~~~d~vlv~~~D~Pli~~~~i~~li 160 (295)
|+. .. +.+-|..+. ..++.++++.+++ | ++.++..+
T Consensus 409 G~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN-f--pe~LD~AL 456 (752)
T KOG0734|consen 409 GGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN-F--PEALDKAL 456 (752)
T ss_pred cccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC-C--hhhhhHHh
Confidence 322 01 122222332 2357888888887 4 55666543
No 180
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=48.68 E-value=2e+02 Score=25.82 Aligned_cols=90 Identities=11% Similarity=0.172 Sum_probs=52.5
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCchHHHHHHHHcCCeEEeCCCC-C-CC-cHHHH
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSES-C-RN-GTERC 127 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~-~-~g-~~~~i 127 (295)
.+|++-|.|+=| +..+++.+.-. ..+-+.|+++.+.+..+++++|++++..+.. . .. ....+
T Consensus 92 i~vl~Sg~gsnl--------------~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~ 157 (286)
T PRK06027 92 VVILVSKEDHCL--------------GDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETKAEAEARL 157 (286)
T ss_pred EEEEEcCCCCCH--------------HHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCccccchhHHHH
Confidence 677888887755 55555554421 2445566677777888888899987542211 1 11 11234
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
...++.. +.| ++++.+=+-.+++..++.
T Consensus 158 ~~~l~~~--~~D-livlagy~~il~~~~l~~ 185 (286)
T PRK06027 158 LELIDEY--QPD-LVVLARYMQILSPDFVAR 185 (286)
T ss_pred HHHHHHh--CCC-EEEEecchhhcCHHHHhh
Confidence 5555555 344 566666666777765553
No 181
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=48.64 E-value=2.4e+02 Score=29.16 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=52.3
Q ss_pred CCcchHHHHHHHHh---hCCCCCeEEEEC--Cc----hHHHHHHHHcC-CeEEeCCCCCCCcH-HHHHHHHHHcc-----
Q 022555 72 LGKPMIQRTWERSK---LATTLDHLVVAT--DD----EKIAECCQQFG-ADVIMTSESCRNGT-ERCNEALQKLE----- 135 (295)
Q Consensus 72 ~gkpLl~~~l~~l~---~~~~i~~IvVv~--~~----~~i~~~~~~~~-~~v~~~~~~~~g~~-~~i~~al~~~~----- 135 (295)
+....+..+++++. .-+. -+|++++ ++ +.+++++++++ +.++..+....++. ..+..++..+.
T Consensus 73 nE~~vi~~~i~~ll~~ldYP~-~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~ 151 (727)
T PRK11234 73 NETGVIGNMAELAATTLDYEN-YHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERS 151 (727)
T ss_pred cchhhHHHHHHHHHHhCCCCC-eEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 44567788888764 2233 3777775 33 23344555554 44444332222332 34566666541
Q ss_pred --ccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 136 --KKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 136 --~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
.+.+.++++++|. .+++..++ ++..+.+
T Consensus 152 ~~~~~~vvvi~DAD~-~v~pd~L~-~~~~l~~ 181 (727)
T PRK11234 152 ANFAFAGFILHDAED-VISPMELR-LFNYLVE 181 (727)
T ss_pred cCCcccEEEEEcCCC-CCChhHHH-HHHhhcC
Confidence 1346789999999 78999997 5555543
No 182
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=46.88 E-value=85 Score=25.81 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=32.0
Q ss_pred HHHHHHHHH-ccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 125 ERCNEALQK-LEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 125 ~~i~~al~~-~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
..+..+++. . ..|.++++++|. .++++.+++++..+.+
T Consensus 20 ~nL~~~~~~~a--~~d~~~~~DsDi-~v~p~~L~~lv~~l~~ 58 (175)
T PF13506_consen 20 NNLAQGLEAGA--KYDYLVISDSDI-RVPPDYLRELVAPLAD 58 (175)
T ss_pred HHHHHHHHhhC--CCCEEEEECCCe-eECHHHHHHHHHHHhC
Confidence 356777776 4 579999999999 7899999999998876
No 183
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.86 E-value=38 Score=24.90 Aligned_cols=42 Identities=26% Similarity=0.465 Sum_probs=27.5
Q ss_pred CCeEEEECCc------hHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHc
Q 022555 90 LDHLVVATDD------EKIAECCQQFGADVIMTSESCRNGTERCNEALQKL 134 (295)
Q Consensus 90 i~~IvVv~~~------~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~ 134 (295)
.|-|+|.|+. ..+.+.+++++.++++.. ..+..++..++..+
T Consensus 49 aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~---~~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR---SRGVSSLERALERL 96 (97)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC---CCCHHHHHHHHHhh
Confidence 5778888862 455677788888887642 24555677776543
No 184
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.49 E-value=2e+02 Score=24.85 Aligned_cols=79 Identities=14% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHHHHHHhhCCCCCeEEEECCc-----hHHHHHHHHcCCeEEeCC-----CCC----CCcHHHHHHHHHHccccCCEEEE
Q 022555 78 QRTWERSKLATTLDHLVVATDD-----EKIAECCQQFGADVIMTS-----ESC----RNGTERCNEALQKLEKKYDIVVN 143 (295)
Q Consensus 78 ~~~l~~l~~~~~i~~IvVv~~~-----~~i~~~~~~~~~~v~~~~-----~~~----~g~~~~i~~al~~~~~~~d~vlv 143 (295)
.-+++.|... ++.+|.|.|+. +...++++..|+.++.-. +.. ..+-.....|.+....+.|.+++
T Consensus 107 ~Avv~aL~al-~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFi 185 (238)
T COG3473 107 TAVVEALNAL-GAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFI 185 (238)
T ss_pred HHHHHHHHhh-CcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEE
Confidence 3456667666 58899999983 333567777888875311 111 11112233444444445676655
Q ss_pred EeCCcccCCHHHHHHH
Q 022555 144 IQGDEPLIEPEIIDGV 159 (295)
Q Consensus 144 ~~~D~Pli~~~~i~~l 159 (295)
- |++ +.+-+.++++
T Consensus 186 S-CTn-lRt~eii~~l 199 (238)
T COG3473 186 S-CTN-LRTFEIIEKL 199 (238)
T ss_pred E-eec-cccHHHHHHH
Confidence 4 887 7776666554
No 185
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=44.84 E-value=2e+02 Score=24.58 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=46.9
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCC---C-cH
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFGADVIMTSESCR---N-GT 124 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~---g-~~ 124 (295)
.+|||-|.||=| +..++.+++-. ..+-++|+++. -...+.++++|++++..+.... . ..
T Consensus 2 i~vl~Sg~Gsn~--------------~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~ 67 (207)
T PLN02331 2 LAVFVSGGGSNF--------------RAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSP 67 (207)
T ss_pred EEEEEeCCChhH--------------HHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccccCCCcccch
Confidence 467888888865 44555555432 13445555653 3345677788988754221110 0 11
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHH
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~ 157 (295)
..+...++.. +.| ++++.+=+-+++++.++
T Consensus 68 ~~~~~~l~~~--~~D-liv~agy~~il~~~~l~ 97 (207)
T PLN02331 68 DELVDALRGA--GVD-FVLLAGYLKLIPVELVR 97 (207)
T ss_pred HHHHHHHHhc--CCC-EEEEeCcchhCCHHHHh
Confidence 2344555555 345 44444444466665554
No 186
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=40.69 E-value=2.5e+02 Score=24.54 Aligned_cols=81 Identities=9% Similarity=-0.031 Sum_probs=46.7
Q ss_pred hHHHHHHHHhhCCCCCeEEEECCc-----hHHHHHHHHcCCeEEeC-CCCCC-------CcHHHHHHHHHHcc-ccCCEE
Q 022555 76 MIQRTWERSKLATTLDHLVVATDD-----EKIAECCQQFGADVIMT-SESCR-------NGTERCNEALQKLE-KKYDIV 141 (295)
Q Consensus 76 Ll~~~l~~l~~~~~i~~IvVv~~~-----~~i~~~~~~~~~~v~~~-~~~~~-------g~~~~i~~al~~~~-~~~d~v 141 (295)
-..-.++.|+.. ++.+|-|+|++ +.+.++.++.|++++.. .-... -....+..++..+. .+.|.+
T Consensus 107 ~~~A~~~AL~al-g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAi 185 (239)
T TIGR02990 107 PSSAAVDGLAAL-GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADAL 185 (239)
T ss_pred HHHHHHHHHHHc-CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEE
Confidence 455667777777 59999999984 44556677778887431 11111 11234555555543 345655
Q ss_pred EEEeCCcccCCHHHHHHH
Q 022555 142 VNIQGDEPLIEPEIIDGV 159 (295)
Q Consensus 142 lv~~~D~Pli~~~~i~~l 159 (295)
++ .|+. +.+-+.++++
T Consensus 186 fi-sCTn-Lrt~~vi~~l 201 (239)
T TIGR02990 186 FL-SCTA-LRAATCAQRI 201 (239)
T ss_pred EE-eCCC-chhHHHHHHH
Confidence 44 5776 5555555444
No 187
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=38.33 E-value=2.2e+02 Score=23.48 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=39.5
Q ss_pred chHHHHHHHHhhCCCCCeEEEECCc---------hHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHcc--ccCCEEEE
Q 022555 75 PMIQRTWERSKLATTLDHLVVATDD---------EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE--KKYDIVVN 143 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i~~IvVv~~~---------~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~--~~~d~vlv 143 (295)
|-+...++.+++....++|+|++|. .+++.+.+..+++++......+++...+..-+..-. ...+. ++
T Consensus 62 ~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~~p~e-ia 140 (168)
T PF09419_consen 62 PEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVTSPSE-IA 140 (168)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCCCchh-EE
Confidence 4566668888877545689999874 233444566788875432223344333332222110 01222 45
Q ss_pred EeCCcc
Q 022555 144 IQGDEP 149 (295)
Q Consensus 144 ~~~D~P 149 (295)
+-||+-
T Consensus 141 vIGDrl 146 (168)
T PF09419_consen 141 VIGDRL 146 (168)
T ss_pred EEcchH
Confidence 568983
No 188
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=35.32 E-value=3e+02 Score=23.88 Aligned_cols=106 Identities=9% Similarity=0.064 Sum_probs=60.9
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCc-hHHHHHHHH---cCCeEEe-CCCCCCCcHHH
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD-EKIAECCQQ---FGADVIM-TSESCRNGTER 126 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~-~~i~~~~~~---~~~~v~~-~~~~~~g~~~~ 126 (295)
.++++-|.-..|..+.. -+.-..+|...+..+.. + .++-|++.. +++....++ ++.++.+ ......++...
T Consensus 91 illlCTG~F~~l~~~~~-lleP~ril~~lV~al~~--~-~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~~~~~~ 166 (221)
T PF07302_consen 91 ILLLCTGEFPGLTARNP-LLEPDRILPPLVAALVG--G-HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYEGDEEE 166 (221)
T ss_pred EEEeccCCCCCCCCCcc-eeehHHhHHHHHHHhcC--C-CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence 66777887777764333 45556789999988863 2 688888874 444433333 3333221 11123345556
Q ss_pred HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (295)
Q Consensus 127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (295)
+..|.+.+....-.+++++|=- | + ...+++++...
T Consensus 167 l~~Aa~~L~~~gadlIvLDCmG-Y-t-~~~r~~~~~~~ 201 (221)
T PF07302_consen 167 LAAAARELAEQGADLIVLDCMG-Y-T-QEMRDIVQRAL 201 (221)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-C-C-HHHHHHHHHHh
Confidence 6666666643234588889876 3 3 34555555543
No 189
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=34.37 E-value=2.5e+02 Score=23.32 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=39.9
Q ss_pred CcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCc
Q 022555 73 GKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 148 (295)
Q Consensus 73 gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~ 148 (295)
+.|=+..-++.++..+ + .++|++| ...+..++++.+++++.... ......+..|++.++.+.+. +++-||+
T Consensus 47 ~tpe~~~W~~e~k~~g-i-~v~vvSNn~e~RV~~~~~~l~v~fi~~A~--KP~~~~fr~Al~~m~l~~~~-vvmVGDq 119 (175)
T COG2179 47 ATPELRAWLAELKEAG-I-KVVVVSNNKESRVARAAEKLGVPFIYRAK--KPFGRAFRRALKEMNLPPEE-VVMVGDQ 119 (175)
T ss_pred CCHHHHHHHHHHHhcC-C-EEEEEeCCCHHHHHhhhhhcCCceeeccc--CccHHHHHHHHHHcCCChhH-EEEEcch
Confidence 3455555555566553 4 5666665 24455566777887776421 12234577888877533333 4445787
No 190
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=34.31 E-value=2.9e+02 Score=23.50 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=52.8
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCC--CeEEEECCc--hHHHHHHHHcCCeE-EeCCCCCCCcH--
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL--DHLVVATDD--EKIAECCQQFGADV-IMTSESCRNGT-- 124 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i--~~IvVv~~~--~~i~~~~~~~~~~v-~~~~~~~~g~~-- 124 (295)
.+|||-|.||-| +..++++.. +.+ +-..|+++. ....+.+++.|++. +.......+-.
T Consensus 3 i~VlaSG~GSNl--------------qaiida~~~-~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~ 67 (200)
T COG0299 3 IAVLASGNGSNL--------------QAIIDAIKG-GKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFPSREAF 67 (200)
T ss_pred EEEEEeCCcccH--------------HHHHHHHhc-CCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCCCHHHH
Confidence 678888888865 666777663 223 233444443 23345567788875 33333332211
Q ss_pred -HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHH
Q 022555 125 -ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 160 (295)
Q Consensus 125 -~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li 160 (295)
..+...++.. ..| ++++.|=|=.+++..++++-
T Consensus 68 d~~l~~~l~~~--~~d-lvvLAGyMrIL~~~fl~~~~ 101 (200)
T COG0299 68 DRALVEALDEY--GPD-LVVLAGYMRILGPEFLSRFE 101 (200)
T ss_pred HHHHHHHHHhc--CCC-EEEEcchHHHcCHHHHHHhh
Confidence 2355556555 234 77888888888887666543
No 191
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.35 E-value=2.9e+02 Score=23.14 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=44.2
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCC-CCeEEEECCch--HHHHHHHHcCCeEEe-CCCCCCCc---H
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT-LDHLVVATDDE--KIAECCQQFGADVIM-TSESCRNG---T 124 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~-i~~IvVv~~~~--~i~~~~~~~~~~v~~-~~~~~~g~---~ 124 (295)
..|+|.|.|+=+ +.+++.+.+... ++-..|+++.+ ...+.+++.+++++. .+...... .
T Consensus 3 iail~sg~gs~~--------------~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~ 68 (190)
T TIGR00639 3 IVVLISGNGSNL--------------QAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFD 68 (190)
T ss_pred EEEEEcCCChhH--------------HHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhh
Confidence 456777777643 445555554321 23333445532 334667788888753 22222111 1
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHH
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~ 157 (295)
..+...++.. ..|. +++.+=+.+++++.++
T Consensus 69 ~~~~~~l~~~--~~D~-iv~~~~~~il~~~~l~ 98 (190)
T TIGR00639 69 QAIIEELRAH--EVDL-VVLAGFMRILGPTFLS 98 (190)
T ss_pred HHHHHHHHhc--CCCE-EEEeCcchhCCHHHHh
Confidence 2345555554 3554 4444444466665554
No 192
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=33.04 E-value=1.5e+02 Score=26.99 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=36.6
Q ss_pred eEEEECCchHHHHHHHHcCCeEEeCCCCCCCc-HHHHHHHHHHccccCCEEEEEeCCc
Q 022555 92 HLVVATDDEKIAECCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDE 148 (295)
Q Consensus 92 ~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~-~~~i~~al~~~~~~~d~vlv~~~D~ 148 (295)
-|+.++..+.+.++++..|+..++......++ ...+..|+... +.+.+++++.+.
T Consensus 98 ~vVAv~~g~g~~~lf~~~Gv~~vi~ggqt~nPS~~dl~~Ai~~~--~a~~VivLPNn~ 153 (313)
T PF13684_consen 98 GVVAVAPGEGLAELFRSLGVDVVISGGQTMNPSTEDLLNAIEKV--GADEVIVLPNNK 153 (313)
T ss_pred EEEEEecCccHHHHHHhCCCeEEEeCCCCCCCCHHHHHHHHHhC--CCCeEEEEeCCc
Confidence 45555567778888888898765543322233 34577888877 467888888776
No 193
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=31.38 E-value=48 Score=35.17 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCCC-----CccccccC------CcchHHHHHHH
Q 022555 51 VGIIPARFASSRFE-----GKPLVNIL------GKPMIQRTWER 83 (295)
Q Consensus 51 ~aiIlAaG~gsRl~-----~K~l~~i~------gkpLl~~~l~~ 83 (295)
..+|=|||.|+|+| .|.|.|+- |.+|.++.++.
T Consensus 94 ~lllHaGG~S~RlP~~s~~GK~f~p~P~~~~~~g~~l~~~~l~~ 137 (974)
T PRK13412 94 RILLHAGGQSRRLPGYAPSGKILTPVPVFRWERGQRLSQNLLSL 137 (974)
T ss_pred EEEEecCCccccCccccccccccccCCccccCCCChhHHHHHHH
Confidence 46788999999998 59998874 77777766654
No 194
>PRK12338 hypothetical protein; Provisional
Probab=28.49 E-value=1.7e+02 Score=26.85 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=67.1
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEE-ECCCCeEEEeecCCCCCCCCCCCCCC
Q 022555 140 IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHGYAIYFSRGLIPYNKSGKVNPQ 218 (295)
Q Consensus 140 ~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~-~d~~g~v~~~~~~~i~~~r~~~~~~~ 218 (295)
.+.++..+. + .++++++++...+. -..+++ .. +.++.. .-...+ +|.+|+|.... -+++ . .
T Consensus 182 ~VpvI~N~d--i-d~Tv~~ile~I~e~-s~~i~~--~H-~~~~~~--~El~~I~vd~Gg~v~dV~-h~iy-G------~- 243 (319)
T PRK12338 182 NVPVIKNDD--I-DCTVKKMLSYIREV-CVTVTL--QH-SVDDLD--EVIEIIIKRHGGRITDIS-YPIP-G------F- 243 (319)
T ss_pred CCceeCCCc--H-HHHHHHHHHHHHhh-eEEEEE--eC-CHHHHH--HHHHeEEecCCCEEEEec-ccCC-C------C-
Confidence 455555554 2 46777777777654 223332 21 211111 113345 78888887655 3332 1 0
Q ss_pred CCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHhcC
Q 022555 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNL 294 (295)
Q Consensus 219 ~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r~~ 294 (295)
+....+-+.+-+......|.+...+..+..+....+.-+..|.-.+.+. .++.++++.+++-|++.|+
T Consensus 244 -~~~i~~~l~i~s~~dv~~Fi~~~~~~~~~~~~~~~L~~lT~gvH~Hti~-------a~~~e~l~~i~~~L~~~G~ 311 (319)
T PRK12338 244 -KDPLKREVNVSDPDEAEKFIKRLNENPKKKEDLKRLYSLSNNVHSHRIC-------APDEESLNRIIEELEEEGL 311 (319)
T ss_pred -CceeEEEEccCCHHHHHHHHHHHhhCCccccchhhHHHHhCCeeEEEEE-------eCCHHHHHHHHHHHHHCCc
Confidence 0135556666777766665431111111111222222334665555444 4899999999999988764
No 195
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=27.25 E-value=2e+02 Score=28.43 Aligned_cols=54 Identities=28% Similarity=0.381 Sum_probs=37.6
Q ss_pred EEEECCchHHHHHHHHcCCeEEeCCCCCCCc-HHHHHHHHHHccccCCEEEEEeCCc
Q 022555 93 LVVATDDEKIAECCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDE 148 (295)
Q Consensus 93 IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~-~~~i~~al~~~~~~~d~vlv~~~D~ 148 (295)
|+.++..+.+.++.++.|+.++.......++ +..+..|++.. +.+.|++++-+.
T Consensus 317 ivAv~~g~g~~~~f~~~Ga~~vi~ggqt~nPS~~dll~ai~~~--~a~~V~iLPNn~ 371 (530)
T TIGR03599 317 IVAVAPGEGIAELFKSLGADVVIEGGQTMNPSTEDILKAIEKV--NAKNVFVLPNNK 371 (530)
T ss_pred EEEEcCCchHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHhC--CCCeEEEecCCc
Confidence 5556667888888889999876543322233 34688888887 467888888874
No 196
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=26.64 E-value=3.6e+02 Score=22.10 Aligned_cols=67 Identities=15% Similarity=0.300 Sum_probs=39.5
Q ss_pred chHHHHHHHHcCCeEEe---CCCCCC-CcHHH-HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555 99 DEKIAECCQQFGADVIM---TSESCR-NGTER-CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (295)
Q Consensus 99 ~~~i~~~~~~~~~~v~~---~~~~~~-g~~~~-i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (295)
.+.+.+.+++.|..++. ...+.. .+... +...+..+. +.+.+|++++|..--+.+.+..+++.+++.
T Consensus 109 ~~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~-~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~ 180 (191)
T TIGR02764 109 NKAVLKAAESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTK-PGDIILLHASDSAKQTVKALPTIIKKLKEK 180 (191)
T ss_pred CHHHHHHHHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCC-CCCEEEEeCCCCcHhHHHHHHHHHHHHHHC
Confidence 35666777788877643 111111 22222 334555554 356777777665445667888999988875
No 197
>PHA03265 envelope glycoprotein D; Provisional
Probab=25.26 E-value=14 Score=34.05 Aligned_cols=34 Identities=38% Similarity=0.481 Sum_probs=21.4
Q ss_pred CCCCCCCChhhhHHHHhhccchh--cccCeeeeeCCCCCC
Q 022555 9 PSESSSSTKSWIVHGIVAGAAIA--VAVGARAYLGRSKNF 46 (295)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 46 (295)
++.++||||- |++-|..|| +-||+.||+.|+|..
T Consensus 341 ~~s~~~~~~~----g~~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 341 PTSKSNSTFV----GISVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred CCCCCCCccc----ceEEccchhhhhhhhHHHHHHhhhhh
Confidence 4455666653 444555555 889999996665544
No 198
>TIGR02968 succ_dehyd_anc succinate dehydrogenase, hydrophobic membrane anchor protein. In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase, a TCA cycle enzyme, are SdhC and SdhD. This family is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex.
Probab=23.70 E-value=43 Score=25.09 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=13.5
Q ss_pred CCCChhhhHHHHhhccc
Q 022555 13 SSSTKSWIVHGIVAGAA 29 (295)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ 29 (295)
.+|+++|++||+-+-+-
T Consensus 2 ~~G~~~w~~~RiSgv~L 18 (105)
T TIGR02968 2 RSGLRDWLLQRVTAVVL 18 (105)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 46889999999976544
No 199
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=23.24 E-value=2.2e+02 Score=27.26 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=42.3
Q ss_pred CCceEEEEEcCCCCCCCC---Ccccccc-CCcchHHHHHHHHhh---CCCCC-eEEEECC---chHHHHHHHHc
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKL---ATTLD-HLVVATD---DEKIAECCQQF 109 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i-~gkpLl~~~l~~l~~---~~~i~-~IvVv~~---~~~i~~~~~~~ 109 (295)
..|+..+=|-||.|+-|| ||.+.++ +|.+.|.-++.++.. .-.++ ..++..+ +++...++++|
T Consensus 101 L~KLavlKLNGGlGttmGc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky 174 (498)
T KOG2638|consen 101 LNKLAVLKLNGGLGTTMGCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKY 174 (498)
T ss_pred hhheEEEEecCCcCCccccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHh
Confidence 456778889999999997 8999999 578877777666552 11243 2333332 45666666654
No 200
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=22.93 E-value=8.5e+02 Score=25.12 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=51.1
Q ss_pred CCcchHHHHHHHHh-hCCC-CCeEEEEC--CchH----HHHHHHHc-CCeEEeCCCCCCCcH-HHHHHHHHHc-------
Q 022555 72 LGKPMIQRTWERSK-LATT-LDHLVVAT--DDEK----IAECCQQF-GADVIMTSESCRNGT-ERCNEALQKL------- 134 (295)
Q Consensus 72 ~gkpLl~~~l~~l~-~~~~-i~~IvVv~--~~~~----i~~~~~~~-~~~v~~~~~~~~g~~-~~i~~al~~~------- 134 (295)
+..-.|..+++++. +..+ -.+|+|++ |+.+ ++++..++ .+.++..+...+.+. ..+-.++..+
T Consensus 81 nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~~l~~~~~~e~~~ 160 (703)
T PRK15489 81 KEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNWIIQAIFRYEAGH 160 (703)
T ss_pred CcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHHHHHHhhhhhc
Confidence 44568888888853 3222 23566654 4322 22333333 244444443322222 3455555543
Q ss_pred cccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCC
Q 022555 135 EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (295)
Q Consensus 135 ~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d 168 (295)
....+.++++++|. .++|..+..+ +.+..+++
T Consensus 161 ~~~fa~vvi~DAEd-~~~P~~L~~~-~~~~~~~~ 192 (703)
T PRK15489 161 GIEFAGVILHDSED-VLHPLELKYF-NYLLPRKD 192 (703)
T ss_pred cCccceEEEEcCCC-CCChhHHHHH-HhhcCCcc
Confidence 11234689999999 7899988765 54444444
No 201
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.19 E-value=4.2e+02 Score=22.80 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=41.1
Q ss_pred CCeEEEECC----chHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 90 LDHLVVATD----DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 90 i~~IvVv~~----~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
..++++.++ .+.+..+++++|++.+.... ..|+..++.+.++.+.+..+ +.+.+|-|-=....+.+
T Consensus 67 ~~~~~amvS~s~DGEliA~~l~kfG~~~IRGSs-~Kgg~~Alr~l~k~Lk~G~~--i~itpDgPkGp~~~~~~ 136 (214)
T COG2121 67 GKKIYAMVSPSRDGELIARLLEKFGLRVIRGSS-NKGGISALRALLKALKQGKS--IAITPDGPKGPVHKIGD 136 (214)
T ss_pred CCcEEEEEcCCcCHHHHHHHHHHcCceEEeccC-CcchHHHHHHHHHHHhCCCc--EEEcCCCCCCCceeccc
Confidence 345666553 35566778889998876543 45666778888888864444 55566666544444433
No 202
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=21.49 E-value=2e+02 Score=23.47 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=28.8
Q ss_pred chHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEE
Q 022555 75 PMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVI 114 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~ 114 (295)
.+|+..+..+... -.+|+|||++..+...+...|+..+
T Consensus 81 ~~Ie~~v~~~~~~--~~~v~VVTSD~~iq~~~~~~GA~~i 118 (166)
T PF05991_consen 81 DYIERLVRELKNR--PRQVTVVTSDREIQRAARGRGAKRI 118 (166)
T ss_pred HHHHHHHHHhccC--CCeEEEEeCCHHHHHHHhhCCCEEE
Confidence 3777777766542 2689999999888888888888764
No 203
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=21.24 E-value=3e+02 Score=19.30 Aligned_cols=47 Identities=34% Similarity=0.449 Sum_probs=32.8
Q ss_pred hHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcc
Q 022555 100 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP 149 (295)
Q Consensus 100 ~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~P 149 (295)
+-+..+++.+|+..+.-. ...++..++...++.++ ....+.+..|-|
T Consensus 23 e~ia~~~~~~G~~~iRGS-s~rgg~~Alr~~~~~lk--~G~~~~itpDGP 69 (74)
T PF04028_consen 23 ELIARVLERFGFRTIRGS-SSRGGARALREMLRALK--EGYSIAITPDGP 69 (74)
T ss_pred HHHHHHHHHcCCCeEEeC-CCCcHHHHHHHHHHHHH--CCCeEEEeCCCC
Confidence 556677788998877654 45577777888888885 244567777766
No 204
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=20.70 E-value=5.9e+02 Score=25.40 Aligned_cols=88 Identities=17% Similarity=0.346 Sum_probs=50.7
Q ss_pred CCcchHHHHHHHHhhCCCCCeEEEECC-----ch----HHHHHHHHcCCeEEeCCCCCCCcHHHH--H-HHHHHccc-cC
Q 022555 72 LGKPMIQRTWERSKLATTLDHLVVATD-----DE----KIAECCQQFGADVIMTSESCRNGTERC--N-EALQKLEK-KY 138 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~i~~IvVv~~-----~~----~i~~~~~~~~~~v~~~~~~~~g~~~~i--~-~al~~~~~-~~ 138 (295)
.|-.=|++.++++++. ++. ++|+.| .+ .++++|++.|++++...-+..||..++ . ..++.+.. ..
T Consensus 356 sGl~NL~RHIenvr~F-GvP-vVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~~~s 433 (557)
T PRK13505 356 KGFANLERHIENIRKF-GVP-VVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIEEGES 433 (557)
T ss_pred HHHHHHHHHHHHHHHc-CCC-EEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHhcCCC
Confidence 4667889999999876 464 445443 22 356788888998876665666665443 2 12222221 12
Q ss_pred CEEEEEeCCcccCCHHHHHHHHHHH
Q 022555 139 DIVVNIQGDEPLIEPEIIDGVVKAL 163 (295)
Q Consensus 139 d~vlv~~~D~Pli~~~~i~~li~~~ 163 (295)
+.-++-+-|.|+ .+-|+.+.+..
T Consensus 434 ~f~~lY~~d~sl--~eKIe~IAkkI 456 (557)
T PRK13505 434 NFKPLYDDEDSL--EEKIEKIATKI 456 (557)
T ss_pred CCceecCCCCcH--HHHHHHHHHHc
Confidence 233444556665 34566666554
No 205
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=20.01 E-value=6.9e+02 Score=23.52 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=48.3
Q ss_pred CcchHHHHHHHHhhCCCCCeEEEECCc--------hHHHHHHHHcCCeEEeCCCCCCCcH-HHHHHHHHHcc-ccCCEEE
Q 022555 73 GKPMIQRTWERSKLATTLDHLVVATDD--------EKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLE-KKYDIVV 142 (295)
Q Consensus 73 gkpLl~~~l~~l~~~~~i~~IvVv~~~--------~~i~~~~~~~~~~v~~~~~~~~g~~-~~i~~al~~~~-~~~d~vl 142 (295)
|+-.+..+-..++.. +..+++++|+. ...++.+++.++++.+.++....++ .++.+|++... .+.|.++
T Consensus 54 G~gv~~Evg~dikn~-gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~v 132 (465)
T KOG3857|consen 54 GKGVLAEVGDDIKNL-GAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFV 132 (465)
T ss_pred cchhHHHHHHHHHhc-CccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEE
Confidence 455566666777777 48899999984 2233455667777743333333443 56888888875 3467777
Q ss_pred EEeCCc
Q 022555 143 NIQGDE 148 (295)
Q Consensus 143 v~~~D~ 148 (295)
-+.+-.
T Consensus 133 aiGGGS 138 (465)
T KOG3857|consen 133 AIGGGS 138 (465)
T ss_pred EEcCcc
Confidence 777765
Done!