Query 022555
Match_columns 295
No_of_seqs 221 out of 1757
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqd_A 3-deoxy-manno-octuloson 100.0 1.2E-42 4.1E-47 306.9 25.0 242 46-288 6-255 (256)
2 4fcu_A 3-deoxy-manno-octuloson 100.0 4.9E-42 1.7E-46 302.6 24.5 242 50-292 2-251 (253)
3 3k8d_A 3-deoxy-manno-octuloson 100.0 1.6E-41 5.5E-46 301.0 23.3 245 43-289 12-263 (264)
4 3oam_A 3-deoxy-manno-octuloson 100.0 4.5E-41 1.5E-45 296.5 23.7 244 48-293 1-251 (252)
5 1h7e_A 3-deoxy-manno-octuloson 100.0 6.4E-35 2.2E-39 255.2 26.7 238 48-292 1-240 (245)
6 1vic_A 3-deoxy-manno-octuloson 100.0 7.2E-35 2.5E-39 257.9 24.1 242 48-293 1-255 (262)
7 2y6p_A 3-deoxy-manno-octuloson 100.0 6.6E-34 2.3E-38 247.0 24.7 232 48-290 1-232 (234)
8 1qwj_A Cytidine monophospho-N- 100.0 9E-30 3.1E-34 220.9 20.3 213 48-293 2-224 (229)
9 3q80_A 2-C-methyl-D-erythritol 100.0 1.8E-29 6.2E-34 219.4 21.1 213 49-290 7-230 (231)
10 1ezi_A CMP-N-acetylneuraminic 100.0 9.6E-30 3.3E-34 220.2 18.8 214 48-291 3-225 (228)
11 3f1c_A Putative 2-C-methyl-D-e 100.0 2.6E-29 8.7E-34 220.4 15.3 219 47-293 1-236 (246)
12 3juk_A UDP-glucose pyrophospho 100.0 1E-27 3.5E-32 213.9 17.9 227 48-293 1-272 (281)
13 4ecm_A Glucose-1-phosphate thy 100.0 8.2E-27 2.8E-31 207.0 20.5 221 50-293 25-261 (269)
14 4fce_A Bifunctional protein GL 99.9 1.5E-26 5.1E-31 219.6 20.2 226 48-292 7-245 (459)
15 1fxo_A Glucose-1-phosphate thy 99.9 9.7E-26 3.3E-30 202.7 22.6 221 48-291 1-241 (293)
16 2xwl_A 2-C-methyl-D-erythritol 99.9 2.2E-25 7.4E-30 191.7 21.8 216 48-293 1-222 (223)
17 2yc3_A 2-C-methyl-D-erythritol 99.9 2.6E-26 9E-31 198.3 16.1 218 48-292 3-227 (228)
18 3pnn_A Conserved domain protei 99.9 1.7E-25 5.9E-30 201.9 21.9 239 46-292 2-292 (303)
19 2ux8_A Glucose-1-phosphate uri 99.9 3.6E-26 1.2E-30 205.6 15.5 231 43-292 8-280 (297)
20 2e3d_A UTP--glucose-1-phosphat 99.9 3E-25 1E-29 200.0 21.5 218 50-288 9-278 (302)
21 1hm9_A GLMU, UDP-N-acetylgluco 99.9 6.5E-25 2.2E-29 208.9 24.6 227 50-292 12-251 (468)
22 2pa4_A UTP-glucose-1-phosphate 99.9 1.3E-25 4.3E-30 204.5 18.7 226 50-291 13-282 (323)
23 1lvw_A Glucose-1-phosphate thy 99.9 6.2E-25 2.1E-29 197.5 22.7 222 45-291 1-242 (295)
24 1vgw_A 4-diphosphocytidyl-2C-m 99.9 3E-24 1E-28 185.6 22.7 213 47-290 4-229 (231)
25 2v0h_A Bifunctional protein GL 99.9 1.2E-24 4E-29 206.3 22.0 227 47-292 3-242 (456)
26 1i52_A 4-diphosphocytidyl-2-C- 99.9 9.9E-26 3.4E-30 195.9 12.3 217 46-292 4-230 (236)
27 1mc3_A Glucose-1-phosphate thy 99.9 8E-25 2.7E-29 196.9 18.5 218 51-291 5-242 (296)
28 2vsh_A TARI, 2-C-methyl-D-eryt 99.9 1.6E-24 5.3E-29 187.8 17.2 213 50-291 3-235 (236)
29 2qh5_A PMI, ALGA, mannose-6-ph 99.9 3.7E-24 1.2E-28 193.6 19.1 234 48-291 3-284 (308)
30 1vpa_A 2-C-methyl-D-erythritol 99.9 1.3E-23 4.6E-28 182.0 21.3 211 50-293 14-231 (234)
31 2waw_A MOBA relate protein; un 99.9 1.4E-23 4.7E-28 177.0 20.4 189 48-291 4-197 (199)
32 2px7_A 2-C-methyl-D-erythritol 99.9 1.8E-24 6.1E-29 188.4 14.2 208 48-293 24-235 (236)
33 1tzf_A Glucose-1-phosphate cyt 99.9 7.4E-24 2.5E-28 186.3 18.1 217 48-292 1-251 (259)
34 1jyk_A LICC protein, CTP:phosp 99.9 1.3E-24 4.3E-29 191.4 10.6 211 48-292 24-253 (254)
35 3brk_X Glucose-1-phosphate ade 99.9 1.1E-23 3.7E-28 198.2 16.8 240 39-292 1-286 (420)
36 2ggo_A 401AA long hypothetical 99.9 2E-23 6.8E-28 194.9 18.1 212 51-292 2-225 (401)
37 2wee_A MOBA-related protein; u 99.9 2.7E-23 9.4E-28 175.0 17.2 187 48-289 4-195 (197)
38 4evw_A Nucleoside-diphosphate- 99.9 1.5E-23 5.3E-28 184.6 14.8 213 52-289 2-245 (255)
39 3st8_A Bifunctional protein GL 99.9 3.4E-22 1.1E-26 192.1 22.7 232 46-292 9-260 (501)
40 3d5n_A Q97W15_sulso; NESG, SSR 99.9 7.5E-23 2.6E-27 173.3 13.9 184 48-291 1-190 (197)
41 1yp2_A Glucose-1-phosphate ade 99.9 1.8E-22 6.3E-27 191.3 17.3 238 47-292 18-297 (451)
42 2cu2_A Putative mannose-1-phos 99.9 2E-22 6.7E-27 184.4 16.3 230 48-286 1-266 (337)
43 2x65_A Mannose-1-phosphate gua 99.9 3.6E-22 1.2E-26 182.6 17.5 226 51-285 3-270 (336)
44 2xme_A CTP-inositol-1-phosphat 99.9 7.1E-23 2.4E-27 177.5 11.5 214 42-289 11-232 (232)
45 3ngw_A Molybdopterin-guanine d 99.9 1.7E-21 5.9E-26 166.4 18.5 107 51-165 2-110 (208)
46 1w55_A ISPD/ISPF bifunctional 99.9 1.2E-22 4E-27 187.7 11.7 199 47-289 1-204 (371)
47 2e8b_A Probable molybdopterin- 99.9 2.7E-22 9.4E-27 170.4 12.8 187 40-290 4-199 (201)
48 3rsb_A Adenosylcobinamide-phos 99.9 1.2E-21 4.1E-26 165.2 12.9 109 51-165 2-119 (196)
49 1e5k_A Molybdopterin-guanine d 99.9 2.1E-21 7.1E-26 165.0 14.3 112 45-162 2-116 (201)
50 2dpw_A Hypothetical protein TT 99.9 3.7E-21 1.3E-25 166.9 12.9 197 48-283 1-231 (232)
51 2i5k_A UTP--glucose-1-phosphat 99.4 6.4E-12 2.2E-16 119.5 15.6 184 47-238 90-320 (488)
52 2icy_A Probable UTP-glucose-1- 99.3 7E-12 2.4E-16 118.6 12.1 227 48-287 78-370 (469)
53 2i5e_A Hypothetical protein MM 99.3 1.7E-11 5.9E-16 104.3 11.1 102 50-161 4-111 (211)
54 1jv1_A Glcnac1P uridyltransfer 99.2 3.3E-10 1.1E-14 108.1 17.7 183 48-238 101-341 (505)
55 3oc9_A UDP-N-acetylglucosamine 98.9 2.7E-08 9.1E-13 92.0 16.6 181 48-238 34-274 (405)
56 2oeg_A UTP-glucose-1-phosphate 98.8 9.6E-09 3.3E-13 97.7 8.9 180 49-237 75-319 (505)
57 2yqc_A UDP-N-acetylglucosamine 98.8 2.1E-08 7.3E-13 95.3 11.3 182 48-237 102-348 (486)
58 3cgx_A Putative nucleotide-dip 97.9 3.7E-05 1.3E-09 66.5 8.6 118 47-170 2-134 (242)
59 3r3i_A UTP--glucose-1-phosphat 97.8 0.00061 2.1E-08 64.6 16.4 188 44-238 122-362 (528)
60 3ogz_A UDP-sugar pyrophosphory 96.8 0.0011 3.7E-08 64.1 4.8 63 49-111 114-186 (630)
61 3gue_A UTP-glucose-1-phosphate 96.3 0.004 1.4E-07 58.5 5.7 60 49-108 76-146 (484)
62 1qg8_A Protein (spore coat pol 96.1 0.088 3E-06 44.4 12.5 94 74-170 13-120 (255)
63 3ckj_A Putative uncharacterize 95.8 0.14 4.8E-06 45.5 12.8 108 47-170 47-164 (329)
64 3bcv_A Putative glycosyltransf 95.7 0.19 6.5E-06 41.8 12.9 105 46-169 3-116 (240)
65 4hg6_A Cellulose synthase subu 95.7 0.12 4.1E-06 52.0 13.3 93 75-170 154-270 (802)
66 3f1y_A Mannosyl-3-phosphoglyce 95.6 0.096 3.3E-06 48.0 11.4 113 47-171 93-213 (387)
67 1xhb_A Polypeptide N-acetylgal 94.8 0.4 1.4E-05 44.6 13.0 108 46-171 27-147 (472)
68 2ffu_A Ppgalnact-2, polypeptid 94.3 0.26 8.7E-06 46.4 10.6 110 45-171 63-179 (501)
69 2z86_A Chondroitin synthase; G 93.6 0.31 1.1E-05 47.1 9.9 110 43-169 88-205 (625)
70 2d7i_A Polypeptide N-acetylgal 93.2 0.51 1.7E-05 45.3 10.6 109 47-172 111-230 (570)
71 2z86_A Chondroitin synthase; G 92.9 0.76 2.6E-05 44.3 11.5 94 72-170 385-486 (625)
72 2bo4_A Mannosylglycerate synth 89.1 3.2 0.00011 37.9 11.0 48 122-171 75-126 (397)
73 4fix_A UDP-galactofuranosyl tr 88.7 0.89 3.1E-05 44.5 7.4 94 72-168 190-298 (657)
74 3l7i_A Teichoic acid biosynthe 77.2 0.48 1.6E-05 46.8 0.0 105 47-170 1-114 (729)
75 1fo8_A Alpha-1,3-mannosyl-glyc 61.9 70 0.0024 28.3 10.7 101 72-174 11-137 (343)
76 3p9x_A Phosphoribosylglycinami 61.5 66 0.0023 26.4 9.9 90 52-158 5-101 (211)
77 3auf_A Glycinamide ribonucleot 61.2 70 0.0024 26.5 10.6 80 76-158 35-121 (229)
78 3av3_A Phosphoribosylglycinami 58.2 75 0.0026 25.9 10.4 78 77-157 17-101 (212)
79 1omz_A Alpha-1,4-N-acetylhexos 56.4 17 0.00059 31.6 5.5 110 48-175 28-143 (293)
80 4ds3_A Phosphoribosylglycinami 51.1 1E+02 0.0034 25.2 9.7 95 47-158 5-106 (209)
81 2ywr_A Phosphoribosylglycinami 50.0 1E+02 0.0036 25.1 9.3 77 76-156 14-98 (216)
82 3kcq_A Phosphoribosylglycinami 46.0 1.1E+02 0.0039 25.0 8.8 88 52-158 11-102 (215)
83 3lou_A Formyltetrahydrofolate 42.6 1.2E+02 0.0042 26.1 8.9 91 51-158 97-191 (292)
84 3o1l_A Formyltetrahydrofolate 42.6 83 0.0028 27.3 7.8 90 52-158 108-201 (302)
85 3da8_A Probable 5'-phosphoribo 42.1 1.4E+02 0.0048 24.4 10.5 93 49-158 12-109 (215)
86 3n0v_A Formyltetrahydrofolate 40.4 1.3E+02 0.0045 25.8 8.7 91 51-158 92-186 (286)
87 1j2j_B ADP-ribosylation factor 37.2 24 0.00082 21.5 2.4 16 277-292 20-35 (45)
88 1jkx_A GART;, phosphoribosylgl 34.8 1.8E+02 0.0063 23.6 9.6 90 52-158 3-99 (212)
89 2nxv_A ATP synthase subunits r 34.4 85 0.0029 25.8 6.4 37 126-165 65-101 (249)
90 2c0n_A A197; thermophil protei 29.1 2.3E+02 0.008 23.0 9.0 64 103-172 18-87 (203)
91 3cgx_A Putative nucleotide-dip 24.9 49 0.0017 27.6 3.2 24 260-286 179-202 (242)
92 2wdq_D Succinate dehydrogenase 24.8 18 0.00063 26.6 0.4 19 11-29 8-26 (115)
93 3bej_E Nuclear receptor coacti 24.5 18 0.00061 18.9 0.2 20 7-26 1-20 (26)
94 3obi_A Formyltetrahydrofolate 24.2 1.3E+02 0.0045 25.8 5.9 91 51-158 91-186 (288)
95 3lbw_A M2 protein; proton chan 23.0 27 0.00093 17.7 0.7 7 18-24 16-22 (23)
96 2k9y_A Ephrin type-A receptor 21.7 30 0.001 20.2 0.9 30 14-43 9-39 (41)
97 3bkd_A Transmembrane domain of 21.3 24 0.00084 18.4 0.3 7 18-24 19-25 (26)
98 1meo_A Phosophoribosylglycinam 21.1 3.3E+02 0.011 21.9 11.0 90 52-158 3-99 (209)
99 3nrb_A Formyltetrahydrofolate 20.1 1.1E+02 0.0037 26.4 4.5 91 52-159 91-186 (287)
No 1
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=100.00 E-value=1.2e-42 Score=306.88 Aligned_cols=242 Identities=35% Similarity=0.586 Sum_probs=201.5
Q ss_pred CCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE 125 (295)
Q Consensus 46 ~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~ 125 (295)
.+|++.+||||||.||||++|+|++++|||||+|+++++.+++ +++|+|+++++++.++++++++++++..+...+|+.
T Consensus 6 ~~M~~~aIIlA~G~stRl~~K~L~~i~GkPli~~~l~~l~~~~-i~~VvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~ 84 (256)
T 3tqd_A 6 GKMEFRVIIPARFDSTRLPGKALVDIAGKPMIQHVYESAIKSG-AEEVVIATDDKRIRQVAEDFGAVVCMTSSDHQSGTE 84 (256)
T ss_dssp ---CCEEEEECCCC---CTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHH
T ss_pred cCCCceEEEEcCCCCCCCCCCCeeeECCchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCCcHH
Confidence 3478999999999999999999999999999999999999885 999999999999999888899998776556677888
Q ss_pred HHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEee
Q 022555 126 RCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFS 203 (295)
Q Consensus 126 ~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~ 203 (295)
++..+++.+. .+.|.+++++||+||+++++++++++.+.+++++.+++.+.+++ .++..+|+.+||+.|++|++++|+
T Consensus 85 ~i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fs 164 (256)
T 3tqd_A 85 RIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFS 164 (256)
T ss_dssp HHHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEE
T ss_pred HHHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEe
Confidence 8888988873 13689999999999999999999999998654444555556664 345678999999999999999999
Q ss_pred cCCCCCCCCCCC-----CCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecC-CcCCCC
Q 022555 204 RGLIPYNKSGKV-----NPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVD 277 (295)
Q Consensus 204 ~~~i~~~r~~~~-----~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~-~~idId 277 (295)
++++|++|+... ....+++.++|+|+|++++|..+..+.++.+|..|.+++++++++|.+|++++.++ .|+|||
T Consensus 165 r~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~id 244 (256)
T 3tqd_A 165 HAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVD 244 (256)
T ss_dssp SSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCS
T ss_pred cCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcC
Confidence 999988875321 11236789999999999999999888888899888888999999999999999985 589999
Q ss_pred CHHHHHHHHHH
Q 022555 278 APEDVEKIESF 288 (295)
Q Consensus 278 tpeDl~~ae~l 288 (295)
||+||++|+++
T Consensus 245 tpeDl~~a~~~ 255 (256)
T 3tqd_A 245 TEEDLERVRAY 255 (256)
T ss_dssp SHHHHHHHHTT
T ss_pred CHHHHHHHHHh
Confidence 99999999875
No 2
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=100.00 E-value=4.9e-42 Score=302.56 Aligned_cols=242 Identities=37% Similarity=0.586 Sum_probs=205.0
Q ss_pred eEEEEEcCCCCCCCCCccccccCCcchHHHHH-HHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHH
Q 022555 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTW-ERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN 128 (295)
Q Consensus 50 i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l-~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~ 128 (295)
+.+||||||+|+||++|+|++++|||||+|++ +++++++ +++|+|+++++++.+++++++++++...+...+|+.++.
T Consensus 2 ~~aiIlA~G~stR~~~K~L~~i~GkPli~~~i~~~~~~~~-~~~vvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~ 80 (253)
T 4fcu_A 2 KHIVIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEG-FDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLS 80 (253)
T ss_dssp EEEEEECCSCCTTSTTGGGSEETTEEHHHHHHHHHHTCTT-CCEEEEEESCHHHHHHHHTTTCCEEECCTTCCCHHHHHH
T ss_pred eEEEEEeCCCCCCCCCCceeeECCeEhHHHHHHHHHHhcC-CCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCChHHHHH
Confidence 57999999999999999999999999999999 9998874 999999999999998888889988765555667778899
Q ss_pred HHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCC-CCCCCCCceEEEECCCCeEEEeecCC
Q 022555 129 EALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGL 206 (295)
Q Consensus 129 ~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~-~~~~~p~~~~v~~d~~g~v~~~~~~~ 206 (295)
.|+..+.. +.|.+++++||+||+++++|+++++.+.++++..+++++++++. ++..+|+.+|++.|++|++++|++++
T Consensus 81 ~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~ 160 (253)
T 4fcu_A 81 EVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRAT 160 (253)
T ss_dssp HHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSC
T ss_pred HHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCC
Confidence 99988752 35899999999999999999999999987544333444445432 34578888999999999999999999
Q ss_pred CCCCCCCCCC-C---CCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCC-cCCCCCHHH
Q 022555 207 IPYNKSGKVN-P---QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPED 281 (295)
Q Consensus 207 i~~~r~~~~~-~---~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~-~idIdtpeD 281 (295)
+|++|+.... + ..++..|+|+|+|++++|..+....++++|.+|.+++++++++|.+|+++..+.. |+|||||+|
T Consensus 161 ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeD 240 (253)
T 4fcu_A 161 IPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQAD 240 (253)
T ss_dssp CSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHH
T ss_pred CCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhCCCCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHH
Confidence 9988864211 1 1256789999999999999988777888998898888888889999999999877 999999999
Q ss_pred HHHHHHHHHHh
Q 022555 282 VEKIESFMRER 292 (295)
Q Consensus 282 l~~ae~ll~~r 292 (295)
|+.|++++++|
T Consensus 241 L~~a~~~l~~r 251 (253)
T 4fcu_A 241 LDRLNNMPVES 251 (253)
T ss_dssp HHHHHTSCGGG
T ss_pred HHHHHHHHHhh
Confidence 99999998876
No 3
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=100.00 E-value=1.6e-41 Score=300.98 Aligned_cols=245 Identities=40% Similarity=0.661 Sum_probs=201.7
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCC
Q 022555 43 SKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN 122 (295)
Q Consensus 43 ~~~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g 122 (295)
+++..|++.+||||||.|||||+|+|++++|||||+|+++++.+++ +++|+|+++++++.++++++++++++..+...+
T Consensus 12 ~~~~~M~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~~~~i~~~~~~~g~~v~~~~~~~~~ 90 (264)
T 3k8d_A 12 PRGSHMSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATDHEDVARAVEAAGGEVCMTRADHQS 90 (264)
T ss_dssp ------CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCS
T ss_pred cCCCCCceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 4567789999999999999998899999999999999999999885 999999999999988888889988776556678
Q ss_pred cHHHHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCC-CCCCCCCceEEEECCCCeEE
Q 022555 123 GTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAI 200 (295)
Q Consensus 123 ~~~~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~-~~~~~p~~~~v~~d~~g~v~ 200 (295)
|+.++..++..+. .+.|.+++++||+||+++++++++++.+.+. ++.+++.+.+++. +++.+|+.+|++.|++|+++
T Consensus 91 Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~-~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l 169 (264)
T 3k8d_A 91 GTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQR-QVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYAL 169 (264)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTS-SCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEE
T ss_pred CHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhc-CCCEEEEEEEcCCHHHccCCCceEEEECCCCeEE
Confidence 8888888887763 2468999999999999999999999999753 4444555566642 45568899999889999999
Q ss_pred EeecCCCCCCCCCC---CCC-CCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEe-cCCcCC
Q 022555 201 YFSRGLIPYNKSGK---VNP-QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHG 275 (295)
Q Consensus 201 ~~~~~~i~~~r~~~---~~~-~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~-~~~~id 275 (295)
+|+++++|++|+.. ..| ..+++.++|+|+|++++|..+..+.++.+|..|.+++++++++|.+|+++.. +..|+|
T Consensus 170 ~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~ 249 (264)
T 3k8d_A 170 YFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTG 249 (264)
T ss_dssp EEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCC
T ss_pred EEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCCChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCC
Confidence 99999988776421 001 1247899999999999999887777788888888888888899999999864 568999
Q ss_pred CCCHHHHHHHHHHH
Q 022555 276 VDAPEDVEKIESFM 289 (295)
Q Consensus 276 IdtpeDl~~ae~ll 289 (295)
||||+||++|++++
T Consensus 250 IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 250 VDTPEDLERVRAEM 263 (264)
T ss_dssp CCSHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999886
No 4
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=100.00 E-value=4.5e-41 Score=296.46 Aligned_cols=244 Identities=41% Similarity=0.676 Sum_probs=203.4
Q ss_pred CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i 127 (295)
|++.+||||||+|||||+|+|++++|||||+|+++++.+++ +++|+|+++++.+.+++.++++++++..+....|+.++
T Consensus 1 M~~~aiIlA~G~stRlp~K~L~~i~GkPli~~~l~~l~~~~-~~~ivVv~~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~~ 79 (252)
T 3oam_A 1 MSFTVVIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAG-ADRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERL 79 (252)
T ss_dssp CCEEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHH
T ss_pred CceEEEEecCcCCCCCCCcceeeECCEEHHHHHHHHHHhCC-CCeEEEECCHHHHHHHHHHcCCEEEEcCCCCCCcHHHH
Confidence 68999999999999998899999999999999999999885 99999999999999988888999877655666788888
Q ss_pred HHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEeecC
Q 022555 128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRG 205 (295)
Q Consensus 128 ~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~~~ 205 (295)
..++..+. .+.|.|++++||+||+++++++++++.+.++ ++.+++.+.++. ++++.+|+..+++.|++|++++|+++
T Consensus 80 ~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~-~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~ 158 (252)
T 3oam_A 80 AEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAAC-SAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRA 158 (252)
T ss_dssp HHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHS-SCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESS
T ss_pred HHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhc-CCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCC
Confidence 88888773 1368999999999999999999999999764 333444445554 23456777788889999999999999
Q ss_pred CCCCCCCCCC--CC--CCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCCCHH
Q 022555 206 LIPYNKSGKV--NP--QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPE 280 (295)
Q Consensus 206 ~i~~~r~~~~--~~--~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdtpe 280 (295)
++|+.|+... +. ..+++.|+|+|+|++++|..+....++.++..|.+++++.+++|.+|.++..+ .+|+|||||+
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~ 238 (252)
T 3oam_A 159 TIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPE 238 (252)
T ss_dssp CSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHH
T ss_pred CCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHH
Confidence 9887664211 11 23578999999999999999887777888888888888878899999998664 6889999999
Q ss_pred HHHHHHHHHHHhc
Q 022555 281 DVEKIESFMRERN 293 (295)
Q Consensus 281 Dl~~ae~ll~~r~ 293 (295)
||+.|++++++|.
T Consensus 239 dl~~a~~~~~~r~ 251 (252)
T 3oam_A 239 DLEVVRRIVAERA 251 (252)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999873
No 5
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=100.00 E-value=6.4e-35 Score=255.23 Aligned_cols=238 Identities=36% Similarity=0.640 Sum_probs=183.1
Q ss_pred CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i 127 (295)
|++.+||||||.|+|||+|+|++++|+|||+|+++++.+++.+++|+|+++++++.++++++++.++.+++...+++.++
T Consensus 1 m~~~aiIlA~G~~~R~~~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~ 80 (245)
T 1h7e_A 1 SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRL 80 (245)
T ss_dssp CCEEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHH
T ss_pred CCeEEEEEcCCcCCCCCCCcccccCCchHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHHcCCeEEeCCCccCCcHHHH
Confidence 67889999999999999999999999999999999999886459999999988888888888898877654555677777
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecC
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG 205 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~ 205 (295)
..++..+ +.+.+++++||+||+++++++++++.+.++ .+.++.+ .++.+.+..+|..++++.+++|++..|.++
T Consensus 81 ~~~~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 156 (245)
T 1h7e_A 81 VEVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC--HAISAAEAAEPSTVKVVVNTRQDALYFSRS 156 (245)
T ss_dssp HHHHHHS--CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEE--EEECHHHHTCTTSCEEEECTTCBEEEEESS
T ss_pred HHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEe--ecCCHHHhcCCCCcEEEECCCCcEEEeecC
Confidence 7888877 358999999999999999999999988764 2333332 333111223566777666788999888876
Q ss_pred CCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHH
Q 022555 206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 285 (295)
Q Consensus 206 ~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~a 285 (295)
+.+..|+. ...+.+.+.|+|+|+++.|..+......+++.+|.+..+.++..|.++.+++++..|+|||||+||+.|
T Consensus 157 ~~~~~r~~---~~~~~~~~~g~y~~~~~~l~~~~~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a 233 (245)
T 1h7e_A 157 PIPYPRNA---EKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKV 233 (245)
T ss_dssp CSSCCTTG---GGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHH
T ss_pred CCCCCccc---ccCceeEEEEEEEcCHHHHHHHHhCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHH
Confidence 54322210 013467899999999998876544444445555554333334578999999998999999999999999
Q ss_pred HHHHHHh
Q 022555 286 ESFMRER 292 (295)
Q Consensus 286 e~ll~~r 292 (295)
+++++++
T Consensus 234 ~~~l~~~ 240 (245)
T 1h7e_A 234 RALMAQE 240 (245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999876
No 6
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=100.00 E-value=7.2e-35 Score=257.90 Aligned_cols=242 Identities=43% Similarity=0.698 Sum_probs=181.8
Q ss_pred CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i 127 (295)
|++.+||||||.|+||++|+|++++|+|||+|+++++.+++ +++|+|+++++++.++++++++.++.+++...+++.++
T Consensus 1 m~~~aiIlA~G~g~R~~~K~l~~~~gkpli~~~l~~l~~~~-~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (262)
T 1vic_A 1 MSFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERL 79 (262)
T ss_dssp -CCEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHH
T ss_pred CCcEEEEEcCCCCCCCCCCccccCCCeEHHHHHHHHHHhCC-CceEEEECCcHHHHHHHHhcCCEEEECCccccCChHHH
Confidence 56789999999999999999999999999999999999885 69999999988888888888888877654556677666
Q ss_pred HHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCC-CCCCCCCceEEEECCCCeEEEeec
Q 022555 128 NEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSR 204 (295)
Q Consensus 128 ~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~-~~~~~p~~~~v~~d~~g~v~~~~~ 204 (295)
..++..+.. +.+.+++++||+||+++++++++++.+.++ .+.++ .+.++.. ++..+|.+++++.+++|++..|.+
T Consensus 80 ~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~v~~f~~ 157 (262)
T 1vic_A 80 AEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMAS--LAVKIHDAEELFNPNAVKVLTDKDGYVLYFSR 157 (262)
T ss_dssp HHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEE--EEEECCCHHHHTCTTSCEEEECTTSBEEEEES
T ss_pred HHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEE--EEEecCCHHHhcCCCceEEEECCCCCEeeeec
Confidence 666666532 357899999999999999999999988653 34333 2344421 122345667766688899999988
Q ss_pred CCCCCCCCCCC-------CCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcC
Q 022555 205 GLIPYNKSGKV-------NPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAH 274 (295)
Q Consensus 205 ~~i~~~r~~~~-------~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~i 274 (295)
+++|++|+. + ..++| +..++|+|+|+++++..+....++.++..+.++++.++..|.+|.+++++ ..|+
T Consensus 158 ~~~~~~r~~-~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~g~~v~~~~~~~~~~~ 236 (262)
T 1vic_A 158 SVIPYDRDQ-FMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAV 236 (262)
T ss_dssp SCSSCCHHH-HTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCC
T ss_pred CCCCcCCcc-ccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHHHHHHHCCCeEEEEEeCCCCCC
Confidence 765544432 1 11455 67899999999998876543333322222222233345579999999998 7999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 022555 275 GVDAPEDVEKIESFMRERN 293 (295)
Q Consensus 275 dIdtpeDl~~ae~ll~~r~ 293 (295)
|||||+||..|+.++++++
T Consensus 237 dI~tpeDl~~a~~~l~~~~ 255 (262)
T 1vic_A 237 GVDTAEDLEKVRAILAANG 255 (262)
T ss_dssp CCCSHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999998875
No 7
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=6.6e-34 Score=246.97 Aligned_cols=232 Identities=36% Similarity=0.587 Sum_probs=176.9
Q ss_pred CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i 127 (295)
|++.+||||||.|+||+||+|++++|+|||+|+++++.++ +++|+|+++++++.++++++ +.++..++...+++.+.
T Consensus 1 m~~~aiIlA~G~g~R~~~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~~~ 77 (234)
T 2y6p_A 1 MRRAVIIPARLGSTRLKEKPLKNLLGKPLIRWVVEGLVKT--GERVILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRV 77 (234)
T ss_dssp -CEEEEEECCSCCTTTTTGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESCHHHHHHHTTT-SEEEECCTTCCSHHHHH
T ss_pred CceEEEEEcCCCCCCCCCCcceeECCEEHHHHHHHHHHHh--CCEEEEECChHHHHHHHHhc-eEEEECCcccccchHHH
Confidence 5788999999999999999999999999999999999876 89999999988888777666 77776655556777776
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCC
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI 207 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i 207 (295)
..+++.+ +.|.+++++||+||+++++++++++.+.++.+ .+++... ...+..+|.+++++.+++|++..|.+++.
T Consensus 78 ~~~~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~g~v~~~~e~~~ 152 (234)
T 2y6p_A 78 LYVVRDL--DVDLIINYQGDEPFVYEEDIKLIFRELEKGER-VVTLARK--DKEAYERPEDVKVVLDREGYALYFSRSPI 152 (234)
T ss_dssp HHHHTTC--CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCS-EEEEEEE--CSGGGGCTTSCEEEECTTSBEEEEESSCC
T ss_pred HHHHHhC--CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCC-eEEEecC--CHHHhcCCCceEEEEcCCCCEeeeecCCC
Confidence 6777666 35799999999999999999999999876543 3343322 11233456777766688899998888764
Q ss_pred CCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHH
Q 022555 208 PYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES 287 (295)
Q Consensus 208 ~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ 287 (295)
++.|+. ++.+.+.++|+|+|+++.|..+....+..++.+|.+.....+..|.++.+++.+++|+|||||+||..|+.
T Consensus 153 ~~~~~~---~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~ 229 (234)
T 2y6p_A 153 PYFRKN---DTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEE 229 (234)
T ss_dssp SCCSSC---CSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHH
T ss_pred Cccccc---ccceeeEEEEEEEcCHHHHHHHHhCCCCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHH
Confidence 322322 13356789999999999987655443333344444333334556899999999999999999999999998
Q ss_pred HHH
Q 022555 288 FMR 290 (295)
Q Consensus 288 ll~ 290 (295)
+++
T Consensus 230 ~~~ 232 (234)
T 2y6p_A 230 KLK 232 (234)
T ss_dssp HCC
T ss_pred HHh
Confidence 864
No 8
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=99.97 E-value=9e-30 Score=220.88 Aligned_cols=213 Identities=19% Similarity=0.199 Sum_probs=157.1
Q ss_pred CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCC----CCCCc
Q 022555 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSE----SCRNG 123 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~----~~~g~ 123 (295)
|++.+||||||+|+||++|+|++++|+|||+|+++++++++.+++|+|+++++++.+++++++++++.+++ ...++
T Consensus 2 ~~~~aiIlA~G~s~R~~~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~ 81 (229)
T 1qwj_A 2 PHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTS 81 (229)
T ss_dssp CCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCCH
T ss_pred CcEEEEEEcCCCCCCCCCcccceECCEEHHHHHHHHHHhCCCcCEEEEECChHHHHHHHHHcCCEEEeChhhhcCCCCcH
Confidence 67899999999999999999999999999999999999886579999999988888888888998877652 34456
Q ss_pred HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202 (295)
Q Consensus 124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~ 202 (295)
+.++..|+..+. +.|.+++++||+||+++++++++++.+.++ .+.++++. +. .+|..+++ .+ +. ..|
T Consensus 82 ~~~v~~al~~~~-~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~--~~-----~~p~~~~v-~~--~~-~~~ 149 (229)
T 1qwj_A 82 LDAIVEFLNYHN-EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVV--RR-----HQFRWSEI-QK--GV-REV 149 (229)
T ss_dssp HHHHHHHHTTCT-TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEE--EE-----CCCEECCC-CS--ST-TCC
T ss_pred HHHHHHHHHhcC-CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEe--ec-----cChhHhhc-cc--cc-ccc
Confidence 678888988773 468999999999999999999999988754 34444432 22 23444433 22 32 113
Q ss_pred ecCCCCCC--CCCCCCCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCC
Q 022555 203 SRGLIPYN--KSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVD 277 (295)
Q Consensus 203 ~~~~i~~~--r~~~~~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idId 277 (295)
.+..+++. |+ ++++.| +..|+|+|+|+++.|. ..+..|.++.++..+ .+|+|||
T Consensus 150 ~~~~~~~~~~~~--~~~~~~~~~~~n~giY~~~~~~l~-------------------~~~~~g~~~~~~~~~~~~~~dId 208 (229)
T 1qwj_A 150 TEPLNLNPAKRP--RRQDWDGELYENGSFYFAKRHLIE-------------------MGYLQGGKMAYYEMRAEHSVDID 208 (229)
T ss_dssp CCBSSSBTTBCC--CTTTSCCEEEEEEEEEEEEHHHHH-------------------TTCSSCSSEEEEECCGGGCCCHH
T ss_pred cccccccccccc--CCCCCCceEEEeeEEEEEEHHHhc-------------------cccccCCeEEEEECCcccccCCC
Confidence 33223322 11 234443 4669999999998761 112245666553544 6899999
Q ss_pred CHHHHHHHHHHHHHhc
Q 022555 278 APEDVEKIESFMRERN 293 (295)
Q Consensus 278 tpeDl~~ae~ll~~r~ 293 (295)
||+||..|+.++++.+
T Consensus 209 t~~Dl~~a~~~~~~~~ 224 (229)
T 1qwj_A 209 VDIDWPIAEQRVLRFG 224 (229)
T ss_dssp HHCSHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999998765
No 9
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=99.97 E-value=1.8e-29 Score=219.36 Aligned_cols=213 Identities=23% Similarity=0.303 Sum_probs=159.0
Q ss_pred ceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHH---HHHHHcCCeEEeCCCCCCC
Q 022555 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQQFGADVIMTSESCRN 122 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~---~~~~~~~~~v~~~~~~~~g 122 (295)
++.+||||||+|+||+ ||+|++++|+|||+|+++++.+++.+++|+|+++++++. +.+.. ++.++.. ...
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~v~~v~g---g~~ 82 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-RAMIVAG---GSN 82 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-GCEEEEC---CSS
T ss_pred ceEEEEECCCCCccCCCCCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-CeEEEcC---CCc
Confidence 4789999999999997 799999999999999999999887799999999876543 33322 4554432 123
Q ss_pred cHHHHHHHHHHcccc--CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555 123 GTERCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI 200 (295)
Q Consensus 123 ~~~~i~~al~~~~~~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~ 200 (295)
...++++|+..+... .+++++++||+||+++++|+++++.+.++.++++.+ .++. ++++. .+++|.+.
T Consensus 83 r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~--~p~~-------dt~~~-~~~~g~v~ 152 (231)
T 3q80_A 83 RTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPV--LPLS-------DTIKA-VDANGVVL 152 (231)
T ss_dssp HHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEE--ECCS-------SCEEE-ECTTSBEE
T ss_pred hHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEE--Eecc-------CCEEE-EcCCCcEE
Confidence 357889999888532 589999999999999999999999988634554433 3442 34654 56778765
Q ss_pred EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCC--CCCcccchhhhhhhhhCCceEEEEEecCCcCCCC
Q 022555 201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP--TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVD 277 (295)
Q Consensus 201 ~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~--~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idId 277 (295)
.. + +|+..+..|+| |+|+.+.|... ..... ..+..+|.... +...|.+|.+++++..+++||
T Consensus 153 ~~-----~-~r~~l~~~qTP-------q~F~~~~L~~a~~~~~~~n~~~~~TD~~~~--~~~~g~~v~~v~g~~~n~kIt 217 (231)
T 3q80_A 153 GT-----P-ERAGLRAVQTP-------QGFTTDLLLRSYQRGSLDLPAAEYTDDASL--VEHIGGQVQVVDGDPLAFKIT 217 (231)
T ss_dssp EC-----C-CGGGEEEECSC-------EEEEHHHHHHHHHHHTC-----CCSSSHHH--HHHTTCCCEEEECCGGGCCCC
T ss_pred Ee-----c-chhheEEEcCC-------cEEEHHHHHHHHHHHHhhcCCCCCCcHHHH--HHHcCCcEEEEECCccccCcC
Confidence 32 2 67777788899 99999988764 33322 13455665421 223799999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 022555 278 APEDVEKIESFMR 290 (295)
Q Consensus 278 tpeDl~~ae~ll~ 290 (295)
||+||..|+.+++
T Consensus 218 ~p~Dl~~ae~~l~ 230 (231)
T 3q80_A 218 TKLDLLLAQAIVR 230 (231)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc
Confidence 9999999999985
No 10
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=99.97 E-value=9.6e-30 Score=220.21 Aligned_cols=214 Identities=18% Similarity=0.218 Sum_probs=155.1
Q ss_pred CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCC----CCCCc
Q 022555 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSE----SCRNG 123 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~----~~~g~ 123 (295)
|++.+||||||.|+||++|+|++++|+|||+|+++++.+++.+++|+|+++++++.++++++++.++.++. ...+.
T Consensus 3 m~~~aiIlA~G~g~R~~~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~ 82 (228)
T 1ezi_A 3 KQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASS 82 (228)
T ss_dssp CEEEEEEECCSSCSSSTTTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHTTCEEEECCC------CHH
T ss_pred CceEEEEecCCCCCCCCCcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCEEEeCchHHcCCCCCh
Confidence 67889999999999999999999999999999999999886689999999988888888888888766543 22233
Q ss_pred HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202 (295)
Q Consensus 124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~ 202 (295)
..++..|+..+..+.|.+++++||+||+++++++++++.+.++ .+.++.+ .+.. ..|....+ ++++|++..|
T Consensus 83 ~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~--~~~~----~~p~~~~~-~~~~g~~~~~ 155 (228)
T 1ezi_A 83 ISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSA--CPME----HHPLKTLL-QINNGEYAPM 155 (228)
T ss_dssp HHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEE--EECS----SCTTSCEE-ECC--CEEES
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEE--EecC----CCcceeeE-EcCCCcEeec
Confidence 4678889988742357899999999999999999999877643 2444333 3432 12333433 4778888877
Q ss_pred ec-CCCCCCCCCCCCCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCCC
Q 022555 203 SR-GLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDA 278 (295)
Q Consensus 203 ~~-~~i~~~r~~~~~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdt 278 (295)
.+ +.. +. +.++.+ +..+.|+|+|+.+.|.... .+ .|.++..+..+ ..|+||||
T Consensus 156 ~~~~~~-~~----~~~~~~~~~~~~~giy~~~~~~l~~~~----------------~~--~g~~v~~~~~~~~~~~dIdt 212 (228)
T 1ezi_A 156 RHLSDL-EQ----PRQQLPQAFRPNGAIYINDTASLIANN----------------CF--FIAPTKLYIMSHQDSIDIDT 212 (228)
T ss_dssp SCHHHH-TC----CGGGSCCEEEEEEEEEEEEHHHHHHHT----------------SS--CCSSCEEEECCTGGGCCCCS
T ss_pred cccccc-cC----CcccCchhheeeeEEEEEeHHHHhhCC----------------cc--cCCceEEEEeCcccccCCCC
Confidence 44 211 11 122222 3567899999998765321 11 25666666655 58999999
Q ss_pred HHHHHHHHHHHHH
Q 022555 279 PEDVEKIESFMRE 291 (295)
Q Consensus 279 peDl~~ae~ll~~ 291 (295)
|+||+.|+.++++
T Consensus 213 peDl~~a~~~l~~ 225 (228)
T 1ezi_A 213 ELDLQQAENILNH 225 (228)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
No 11
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=99.96 E-value=2.6e-29 Score=220.42 Aligned_cols=219 Identities=20% Similarity=0.254 Sum_probs=151.0
Q ss_pred CCceEEEEEcCCCCCCCC----CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcCC--eE-EeC
Q 022555 47 RSRVVGIIPARFASSRFE----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGA--DV-IMT 116 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~----~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~~--~v-~~~ 116 (295)
||++.+||||||+|+||+ ||+|++++|+|||+|+++++.+++.+++|+|+++++. +.+.++.++. .+ +..
T Consensus 1 M~~~~aIIlAaG~g~Rm~~~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIE 80 (246)
T ss_dssp -CCEEEEEECC-----C-CSSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEE
T ss_pred CCccEEEEECCccccccCCCCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 567899999999999996 5999999999999999999998866999999998653 3344544431 12 222
Q ss_pred CCCCCCcHHHHHHHHHHccc-----cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE
Q 022555 117 SESCRNGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC 191 (295)
Q Consensus 117 ~~~~~g~~~~i~~al~~~~~-----~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v 191 (295)
. ..+...+++.|+..+.. +.+.+++++||+||+++++++++++.+.+. ++.+++ .++. ++++
T Consensus 81 ~--~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~-~a~i~~--~~~~-------d~i~- 147 (246)
T 3f1c_A 81 G--GEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALET-GAVDTV--IEAL-------DTIV- 147 (246)
T ss_dssp C--CSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHT-SEEEEE--EECS-------SCEE-
T ss_pred C--CCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhc-CCEEEE--Eecc-------ceEE-
Confidence 1 22445678889988753 258999999999999999999999999875 344333 3332 2443
Q ss_pred EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCC-CCCcccchhhhhhhhhCCceEEEEEe
Q 022555 192 VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP-TPLQLEEDLEQLKVLENGYKMKVIKV 269 (295)
Q Consensus 192 ~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~-~~~~~~d~~~~~~~~~~G~~v~~v~~ 269 (295)
..++++.+..+ .+|+..+..|+| |+|+.+.|... ..+.. .++..+|... .+...|.+|.++++
T Consensus 148 ~~~~~~~v~~~------~~r~~l~~~qtp-------q~f~~~~L~~a~~~~~~~~~~~~TD~~~--~~~~~g~~v~~v~~ 212 (246)
T 3f1c_A 148 ESSNHEVITDI------PVRDHMYQGQTP-------QSFNMKKVFNHYQNLTPEKKQILTDACK--ICLLAGDDVKLVKG 212 (246)
T ss_dssp ECSSSSBCCBC------CCGGGEEEEEEE-------EEEEHHHHHHHHHTSCHHHHHHCCCHHH--HHHHTTCCCEEEEC
T ss_pred EecCCCeEEEe------cChHHhhhhcCC-------ceeEHHHHHHHHHHHHHcCCCccCcHHH--HHHHcCCCEEEEeC
Confidence 23445554321 245544455566 89999887753 33311 1233455432 12347999999999
Q ss_pred cCCcCCCCCHHHHHHHHHHHHHhc
Q 022555 270 DHEAHGVDAPEDVEKIESFMRERN 293 (295)
Q Consensus 270 ~~~~idIdtpeDl~~ae~ll~~r~ 293 (295)
+..|+|||||+||..|+.++++|.
T Consensus 213 ~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 213 EIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred CCCccCcCCHHHHHHHHHHHhccc
Confidence 999999999999999999999873
No 12
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=99.95 E-value=1e-27 Score=213.94 Aligned_cols=227 Identities=11% Similarity=0.097 Sum_probs=162.4
Q ss_pred CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH-----------
Q 022555 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ----------- 108 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~----------- 108 (295)
|.+.+||||||.|+||+ ||+|++++|+|||+|+++++.+++ +++|+|+++ .+.+.+++..
T Consensus 1 M~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 79 (281)
T 3juk_A 1 MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAG-CEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGT 79 (281)
T ss_dssp CCCEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHHT-CCEEEEEECTTHHHHHHHTSCCC--------C
T ss_pred CceEEEEECCcCCcccCccccCCCcccceECCEEHHHHHHHHHHhCC-CCEEEEEecCCHHHHHHHHhcchhhhhhhhcc
Confidence 45679999999999996 599999999999999999999885 999999996 3556555432
Q ss_pred -------------cCCeEEe-CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHH----HHHHHHHHHHhCCCcE
Q 022555 109 -------------FGADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE----IIDGVVKALQAAPDAV 170 (295)
Q Consensus 109 -------------~~~~v~~-~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~----~i~~li~~~~~~~d~~ 170 (295)
+++.+.+ .+....|...+++.|+..+. .+.+++++||+ +++.+ .++++++.+.+....+
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~--~~~~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~~ 156 (281)
T 3juk_A 80 NKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG--NEPFAVILADD-LCISHDHPSVLKQMTSLYQKYQCSI 156 (281)
T ss_dssp CHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTE-EEECTTSCCHHHHHHHHHHHHCSCE
T ss_pred cchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcC--CCCEEEEeCCe-eccCccchHHHHHHHHHHHHcCCCE
Confidence 2355532 22233455577888988884 46799999999 77777 7999999887643344
Q ss_pred EEEeeeeCCCCCCCCCCceEE-EECC--CC--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC--
Q 022555 171 FSTAVTSLKPEDAFDPNRVKC-VVDN--HG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP-- 243 (295)
Q Consensus 171 v~v~~~~~~~~~~~~p~~~~v-~~d~--~g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~-- 243 (295)
+++ .++.. .+|..+++ ..++ +| ++..|.|++.+ .....+.+++|+|+|++++|..+....+
T Consensus 157 v~~--~~~~~---~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~-------~~~~~~~~~~GiYi~~~~~l~~l~~~~~~~ 224 (281)
T 3juk_A 157 VAI--EEVAL---EEVSKYGVIRGEWLEEGVYEIKDMVEKPNQ-------EDAPSNLAVIGRYILTPDIFEILSETKPGK 224 (281)
T ss_dssp EEE--EECCT---TTGGGSEEEEEEEEETTEEEEEEEEESCCT-------TTCSCSEEEEEEEEECTTHHHHHHTCCCCG
T ss_pred EEE--EEech---hhcccCCEEEeccCCCCceEEeEEEECcCC-------CCCCcceeEEEEEEECHHHHHHHHhcCCCC
Confidence 443 33321 12334433 3454 67 89999888532 1112468899999999999876655432
Q ss_pred -CCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHhc
Q 022555 244 -TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 293 (295)
Q Consensus 244 -~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r~ 293 (295)
.+++++|.+. .++..| ++.+++.+++|+|||||+||..|+..+...+
T Consensus 225 ~~e~~l~d~i~--~l~~~~-~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~~ 272 (281)
T 3juk_A 225 NNEIQITDALR--TQAKRK-RIIAYQFKGKRYDCGSVEGYIEASNAYYKKR 272 (281)
T ss_dssp GGSCCHHHHHH--HHHHHS-CCEEEECCSEEEETTSHHHHHHHHHHHHHHH
T ss_pred CCceeHHHHHH--HHHhcC-CEEEEEeCCeEEcCCCHHHHHHHHHHHHhch
Confidence 2344444432 233455 8999998899999999999999999887764
No 13
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=99.95 E-value=8.2e-27 Score=207.02 Aligned_cols=221 Identities=18% Similarity=0.184 Sum_probs=158.7
Q ss_pred eEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCeEEeC-
Q 022555 50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMT- 116 (295)
Q Consensus 50 i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~v~~~- 116 (295)
+.+||||||.|+||+ ||+|++++|+|||+|+++++.+++ +++|+|+++. +++.+++. .+++.+.+.
T Consensus 25 m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~g-~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (269)
T 4ecm_A 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCD-ITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYRV 103 (269)
T ss_dssp EEEEEECCSCCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEE
T ss_pred cEEEEECCCCccccccccCCCCceecEECCEEHHHHHHHHHHHCC-CCEEEEECChhhHHHHHHHHhhccccCceEEEee
Confidence 679999999999996 599999999999999999999985 9999999983 45555554 245666432
Q ss_pred CCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCC
Q 022555 117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196 (295)
Q Consensus 117 ~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~ 196 (295)
+....|...++..++..+. .+.+++++||+|+. .+++++++.+.+.. +.+++.+.++. +|..++++..++
T Consensus 104 ~~~~~G~~~al~~a~~~~~--~~~~lv~~~D~~~~--~~l~~l~~~~~~~~-~~~~~~~~~~~-----~~~~~g~v~~d~ 173 (269)
T 4ecm_A 104 QDKAGGIAQALGLCEDFVG--NDRMVVILGDNIFS--DDIRPYVEEFTNQK-EGAKVLLQSVD-----DPERFGVANIQN 173 (269)
T ss_dssp CSSCCCHHHHHHTTHHHHT--TSEEEEEETTEEES--SCSHHHHHHHHTSS-SSEEEEEEECS-----CGGGSEEEEEET
T ss_pred CCccCcHHHHHHHHHHhcC--CCcEEEEeCCccCc--cCHHHHHHHHHhcC-CCeEEEEEECC-----CCCCceEEEEcC
Confidence 2233344567888888774 57899999999874 67999999887542 22233334442 333444443336
Q ss_pred CeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC---CCCcccchhhhhhhhhCCceEEEEEecCCc
Q 022555 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---TPLQLEEDLEQLKVLENGYKMKVIKVDHEA 273 (295)
Q Consensus 197 g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~---~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~ 273 (295)
|++..|.+++. ....+.+++|+|+|++++|..+....+ .+++.++.+. .++..| ++.+++.+++|
T Consensus 174 g~v~~~~ekp~---------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~ge~~l~d~l~--~l~~~g-~v~~~~~~~~~ 241 (269)
T 4ecm_A 174 RKIIEIEEKPK---------EPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINN--WYLKRG-VLTYNEMSGWW 241 (269)
T ss_dssp TEEEEEEESCS---------SCSCSEEEEEEEEECTTHHHHHTSCCBCTTSCBCHHHHHH--HHHHTT-CEEEEECCSCE
T ss_pred CEEEEEEECCC---------CCCCcEEEEEEEEECHHHHHhhhhcCCCCCCeeeHHHHHH--HHHHcC-CEEEEEeCCEE
Confidence 89999888742 112468899999999999876654432 2344444432 233456 78888888899
Q ss_pred CCCCCHHHHHHHHHHHHHhc
Q 022555 274 HGVDAPEDVEKIESFMRERN 293 (295)
Q Consensus 274 idIdtpeDl~~ae~ll~~r~ 293 (295)
+|||||+||..|+.++.+.+
T Consensus 242 ~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 242 TDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp EECSSHHHHHHHHHHTTTCC
T ss_pred EeCCCHHHHHHHHHHHHhcc
Confidence 99999999999999987653
No 14
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=99.95 E-value=1.5e-26 Score=219.56 Aligned_cols=226 Identities=15% Similarity=0.186 Sum_probs=162.0
Q ss_pred CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCC
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRN 122 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g 122 (295)
|++.+||||||.|+||+ ||+|++++|+|||+|+++++.+.+ +++|+|+++. +++.++++..++.++..+ ...|
T Consensus 7 ~~~~aiIlA~G~g~Rl~~~~pK~l~~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~~~~i~~~~~~~~~~~v~~~-~~~g 84 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYSDLPKVLHPLAGKPMVQHVIDAAMKLG-AQHVHLVYGHGGELLKKTLADPSLNWVLQA-EQLG 84 (459)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHHHT-CSCEEEEESSCHHHHHHHC-----CEEECS-SCCC
T ss_pred CcceEEEECCCCCccCCCCCCcccCeeCCeeHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhccCCcEEEeCC-CCCC
Confidence 57899999999999997 599999999999999999999885 9999999974 566666655666666543 3445
Q ss_pred cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEEE
Q 022555 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIY 201 (295)
Q Consensus 123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~~ 201 (295)
...+++.|++.+. +.+.+++++||+||+++++++++++.+.+ .+..+. ..+.. +|..+ .+..+ +|++..
T Consensus 85 ~~~~i~~~~~~~~-~~~~~lv~~~D~P~i~~~~i~~l~~~~~~-~~~~~~--~~~~~-----~~~~~g~v~~~-~g~v~~ 154 (459)
T 4fce_A 85 TGHAMQQAAPHFA-DDEDILMLYGDVPLISVDTLQRLLAAKPE-GGIGLL--TVKLD-----NPSGYGRIVRE-NGDVVG 154 (459)
T ss_dssp HHHHHHHHGGGSC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT-TSEEEE--EEECS-----CCTTSCEEEEE-TTEEEE
T ss_pred cHHHHHHHHHhcC-CCCcEEEEeCCcccCCHHHHHHHHHHHhh-CCEEEE--EEecC-----CCCcccEEEeC-CCcEEE
Confidence 5678999998885 35899999999999999999999998765 343332 23332 22223 23344 789998
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCC----CCCCcccchhhhhhhhhCCceEEEEEecC--CcC
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLH----PTPLQLEEDLEQLKVLENGYKMKVIKVDH--EAH 274 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~----~~~~~~~d~~~~~~~~~~G~~v~~v~~~~--~~i 274 (295)
+.+++.. . ..+......++|+|+|+++.|..+. .+. ..++..+|.+. .+...|.++..++.++ .++
T Consensus 155 ~~ek~~~-~----~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~--~~~~~g~~v~~~~~~~~~~~~ 227 (459)
T 4fce_A 155 IVEHKDA-S----DAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIA--LAHADGKKIATVHPTRLSEVE 227 (459)
T ss_dssp EECGGGC-C----TTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHH--HHHHTTCCEEEECCSSGGGGC
T ss_pred EEECCCC-C----hHHhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHH--HHHHCCCeEEEEEcCCHHHhh
Confidence 8776421 0 1122346889999999999875432 221 22334444432 3345788999999874 568
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 022555 275 GVDAPEDVEKIESFMRER 292 (295)
Q Consensus 275 dIdtpeDl~~ae~ll~~r 292 (295)
|||||+||+.|+++++.+
T Consensus 228 ~I~tp~Dl~~ae~~l~~~ 245 (459)
T 4fce_A 228 GVNNRLQLSALERVFQTE 245 (459)
T ss_dssp CCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998875
No 15
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=99.94 E-value=9.7e-26 Score=202.65 Aligned_cols=221 Identities=18% Similarity=0.225 Sum_probs=156.1
Q ss_pred CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC---chHHHHHHHH---cCCeEEe
Q 022555 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQ---FGADVIM 115 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~---~~~i~~~~~~---~~~~v~~ 115 (295)
|++.+||||||.|+||+ ||+|++++|+|||+|+++++..++ +++|+|++. .+.+.+++.+ +++++.+
T Consensus 1 M~~~aIILAgG~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~ 79 (293)
T 1fxo_A 1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPQDTPRFQQLLGDGSNWGLDLQY 79 (293)
T ss_dssp -CEEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEE
T ss_pred CCceEEEECCCCCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCC-CCEEEEEeccccHHHHHHHHhcccccCceEEE
Confidence 56789999999999997 899999999999999999999885 999987763 2456666653 5766532
Q ss_pred -CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEE-E
Q 022555 116 -TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKC-V 192 (295)
Q Consensus 116 -~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v-~ 192 (295)
.++...|...++..|+..+. .+.++++.||+||.+ ..+.++++.+.+. .++.+ .+.++ .+|..+++ .
T Consensus 80 ~~~~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v--~~~~v-----~dp~~~g~v~ 149 (293)
T 1fxo_A 80 AVQPSPDGLAQAFLIGESFIG--NDLSALVLGDNLYYG-HDFHELLGSASQRQTGASV--FAYHV-----LDPERYGVVE 149 (293)
T ss_dssp EECSSCCCGGGHHHHTHHHHT--TSEEEEEETTEEEEC-TTHHHHHHHHHTCCSSEEE--EEEEC-----SCGGGSEEEE
T ss_pred eeCCCCCCHHHHHHHHHHHhC--CCCEEEEECChhccC-ccHHHHHHHHHhcCCCcEE--EEEEC-----CCcccCcEEE
Confidence 22233344567888888874 467888889999987 5899999988643 33333 23344 23444543 4
Q ss_pred ECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEe
Q 022555 193 VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKV 269 (295)
Q Consensus 193 ~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~ 269 (295)
.|++|++..|.++|. .+ ..++.++|+|+|+++++..+..+.++ +++.+|.+. .++..| ++.++..
T Consensus 150 ~d~~g~v~~~~ekp~-~~--------~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~--~~l~~g-~~~v~~~ 217 (293)
T 1fxo_A 150 FDQGGKAISLEEKPL-EP--------KSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNR--AYLERG-QLSVEIM 217 (293)
T ss_dssp ECTTSCEEEEEESCS-SC--------SSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHH--HHHHTT-CEEEEEC
T ss_pred ECCCCcEEEEEECCC-CC--------CCCeEEEEEEEEcHHHHHHHHhcCcccCCceeHHHHHH--HHHhcC-CeEEEEe
Confidence 678899999988752 11 13588999999999998766544332 344444332 234455 4555555
Q ss_pred c-C-CcCCCCCHHHHHHHHHHHHH
Q 022555 270 D-H-EAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 270 ~-~-~~idIdtpeDl~~ae~ll~~ 291 (295)
. + .|+|||||+||..|+.+++.
T Consensus 218 ~~g~~w~Digt~edl~~a~~~~~~ 241 (293)
T 1fxo_A 218 GRGYAWLDTGTHDSLLEAGQFIAT 241 (293)
T ss_dssp CTTSEEEECCSHHHHHHHHHHHHH
T ss_pred CCCCEEEcCCCHHHHHHHHHHHHH
Confidence 4 5 49999999999999988864
No 16
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=99.94 E-value=2.2e-25 Score=191.69 Aligned_cols=216 Identities=21% Similarity=0.283 Sum_probs=146.9
Q ss_pred CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc---CCeEEeCCCCCC
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF---GADVIMTSESCR 121 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~---~~~v~~~~~~~~ 121 (295)
|++.+||||||+|+||+ +|+|++++|+|||+|+++++.+++.+++|+|+++++....+.+.. ++.++.. ..
T Consensus 1 m~~~~vIlA~G~g~R~~~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~v~~~~~---~~ 77 (223)
T 2xwl_A 1 MATVAVVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGGEDSVIVSG---GV 77 (223)
T ss_dssp -CEEEEEECCCCCGGGTSSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTCBTTEEEEEC---CS
T ss_pred CceEEEEECCccCcccCCCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhccCCeEEEcC---CC
Confidence 56889999999999998 899999999999999999999875589999999875433233222 3333322 23
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~ 201 (295)
+...++..|+..+. +.+.+++++||+||+++++++++++.+.+..+..+.+ .++. + .++. .+++|++..
T Consensus 78 ~~~~~i~~al~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~i~~--~~~~-----d--~~~~-~~~~g~~~~ 146 (223)
T 2xwl_A 78 DRTESVALALEAAG-DAEFVLVHDAARALTPPALIARVVAALKEGHSAVVPG--LAPA-----D--TIKA-VDANGAVLG 146 (223)
T ss_dssp SHHHHHHHHHTTCT-TCSEEEECCTTCTTCCHHHHHHHHHHHHHTCSEEEEE--ECCS-----S--CEEE-ECTTSBEEE
T ss_pred CHHHHHHHHHHhcC-CCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEE--Eecc-----c--ceEE-EcCCCcEEe
Confidence 45678889998873 3578999999999999999999999882223443332 3331 2 2333 366788765
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHH
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPED 281 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeD 281 (295)
+.+++ ..+...+| |+|++..+........ +...++... .+...|.++..++.+..|+|||||+|
T Consensus 147 ~~e~~------~l~~~~~p-------~~f~~~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~v~~~~~~~~~~dIdtpeD 210 (223)
T 2xwl_A 147 TPERA------GLRAVQTP-------QGFHADVLRRAYARAT-AGGVTDDAS--LVEQLGTPVQIVDGDPLAFKITTPLD 210 (223)
T ss_dssp CCCGG------GEEEECSC-------EEEEHHHHHHHHTTCC-SCCCCCHHH--HHHTTTCCCEEEECCGGGCCCCSHHH
T ss_pred ecChH------HheeeeCC-------cccCHHHHHHHHHHhh-CCCCccHHH--HHHHcCCCEEEEECCcccccccCHHH
Confidence 43321 00011223 8899887765332111 111222221 11235778888888788999999999
Q ss_pred HHHHHHHHHHhc
Q 022555 282 VEKIESFMRERN 293 (295)
Q Consensus 282 l~~ae~ll~~r~ 293 (295)
|..|+.+++++.
T Consensus 211 l~~a~~~l~~~~ 222 (223)
T 2xwl_A 211 LVLAEAVLAHHH 222 (223)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHhhcc
Confidence 999999998763
No 17
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=99.94 E-value=2.6e-26 Score=198.31 Aligned_cols=218 Identities=18% Similarity=0.200 Sum_probs=142.1
Q ss_pred CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH--HHH-HHHHcCCeEEeCCCCCC
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK--IAE-CCQQFGADVIMTSESCR 121 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~--i~~-~~~~~~~~v~~~~~~~~ 121 (295)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++.+++++++|+|+++++. +.+ +...++..+.+... ..
T Consensus 3 ~~~~aiIlAaG~g~R~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~~-~~ 81 (228)
T 2yc3_A 3 KSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIP-GK 81 (228)
T ss_dssp TCEEEEEECCCCC-------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEECC-CS
T ss_pred cceEEEEECCccccccCCCCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEECC-CC
Confidence 46889999999999998 8999999999999999999998766899999998643 322 22234444422211 24
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~ 201 (295)
+...+++.|+..+..+.+.++++++|+||+++++++.+++.+.+. ++.+. +.+.. +.++. .+++|.+..
T Consensus 82 ~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~-~~~i~--~~~~~-------~~~~~-~~~~~~v~~ 150 (228)
T 2yc3_A 82 ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAV-GAAVL--GVPAK-------ATIKE-VNSDSLVVK 150 (228)
T ss_dssp SHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHH-SEEEE--EEECC-------SCCCC-BCTTSCBCC
T ss_pred CHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHHHHHhc-CceEE--EEecc-------ceEEE-EcCCCceEE
Confidence 566788999988753457899999999999999999999988754 33322 22321 12322 344554431
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHH
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPE 280 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpe 280 (295)
. + +|+ +.......|+|+.+.|.. +.......++.++.... +...|.++..++.+..|+|||||+
T Consensus 151 ---~--~-~~~-------~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~--l~~~g~~v~~~~~~~~~~dIdtpe 215 (228)
T 2yc3_A 151 ---T--L-DRK-------TLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSI--VEYLKHPVYVSQGSYTNIKVTTPD 215 (228)
T ss_dssp ---C--C-SCC-------CCEEEEEEEEECHHHHHHHHHHHHHHTCCCCSTTHH--HHHSSSCCEEEECCTTCCCCCSHH
T ss_pred ---e--c-Ccc-------ceEEEeCCcEEEHHHHHHHHHHHHhcCCCcccHHHH--HHHcCCceEEEeCCccccCcCCHH
Confidence 1 1 221 122223479999876654 32211112333443221 234688888777777899999999
Q ss_pred HHHHHHHHHHHh
Q 022555 281 DVEKIESFMRER 292 (295)
Q Consensus 281 Dl~~ae~ll~~r 292 (295)
||+.|++++++|
T Consensus 216 Dl~~a~~~l~~~ 227 (228)
T 2yc3_A 216 DLLLAERILSED 227 (228)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHhhc
Confidence 999999998764
No 18
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=99.94 E-value=1.7e-25 Score=201.95 Aligned_cols=239 Identities=10% Similarity=0.076 Sum_probs=162.5
Q ss_pred CCCceEEEEEcCCCCCCCC-Ccccccc--CCcchHHHHHHHHhhCCCCCeEEEECCch---HHHHHHHH---cCCe--EE
Q 022555 46 FRSRVVGIIPARFASSRFE-GKPLVNI--LGKPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ---FGAD--VI 114 (295)
Q Consensus 46 ~~~~i~aiIlAaG~gsRl~-~K~l~~i--~gkpLl~~~l~~l~~~~~i~~IvVv~~~~---~i~~~~~~---~~~~--v~ 114 (295)
.||++.+||||||.|+||+ +|+|+++ +|+|||+|+++++.++ ++++|+|+++.. .+.+++.. .+.. ++
T Consensus 2 ~~m~~~~vIlAaG~g~R~~~~K~l~~ig~~g~pli~~~l~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (303)
T 3pnn_A 2 NAMKPTLFVLAAGMGSRYGSLKQLDGIGPGGDTIMDYSVYDAIRA-GFGRLVFVIRHSFEKEFREKILTKYEGRIPVELV 80 (303)
T ss_dssp -CCCCEEEEECTTCBCTTSSBCCCCCCSTTSCCHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEE
T ss_pred CCCceEEEEECCCCcccCCCCceEeEcCCCCeeHHHHHHHHHHHC-CCCeEEEEcCchHHHHHHHHHHHHhccCCcEEEE
Confidence 4678899999999999995 7999999 6999999999999887 599999999843 44444432 1333 33
Q ss_pred eCCC--------------CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEeeeeC
Q 022555 115 MTSE--------------SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFSTAVTSL 178 (295)
Q Consensus 115 ~~~~--------------~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~~v~v~~~~~ 178 (295)
..+. ...|...+++.|+..+ .+.+++++||. +++.+.++.+++.+.+. .++.+++...++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i---~~~~lV~~gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~ 156 (303)
T 3pnn_A 81 FQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI---REPFAVINADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRV 156 (303)
T ss_dssp ECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC---CSCEEEEESSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEG
T ss_pred ecccccccccccccccccccCCcHHHHHHHHHhc---CCCEEEEECCe-ecCHHHHHHHHHHHHHhccccCceEEEEEEC
Confidence 3321 1234445677777776 35789999999 77888899999988751 234445544444
Q ss_pred CCCCCCCCCc---eEEEECCCCeEEEeecCCCCCCCCC----CCCC------CCCceEEEeEEEecHHHHhhccc-----
Q 022555 179 KPEDAFDPNR---VKCVVDNHGYAIYFSRGLIPYNKSG----KVNP------QFPYLLHLGIQSYDSNFLKIYPG----- 240 (295)
Q Consensus 179 ~~~~~~~p~~---~~v~~d~~g~v~~~~~~~i~~~r~~----~~~~------~~p~~~~~Giyif~~~~l~~~~~----- 240 (295)
.. ...+.+. ..+..|++|++..|.|++.....+. ...+ .....+++|+|+|++++|..+..
T Consensus 157 ~~-~~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~~ 235 (303)
T 3pnn_A 157 GN-TLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINF 235 (303)
T ss_dssp GG-SCBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHHH
T ss_pred CC-ccCccCceeeeeEeeCCCCcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHHHHHHHHHH
Confidence 21 0011111 1334677899999998863200000 0000 13468899999999999875532
Q ss_pred ------CCCCCCcccchhhhhhhhhCCc-eEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555 241 ------LHPTPLQLEEDLEQLKVLENGY-KMKVIKVDHEAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 241 ------~~~~~~~~~d~~~~~~~~~~G~-~v~~v~~~~~~idIdtpeDl~~ae~ll~~r 292 (295)
....+++.+|.+. .++..|. +|.+++.+++|+|||||+||..|++.+++.
T Consensus 236 l~~~~~~~~~e~~l~d~i~--~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~ 292 (303)
T 3pnn_A 236 LNAHGQEPKSEFFIPFVVN--DLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLREL 292 (303)
T ss_dssp HHHHTTCSSCCCCHHHHHH--HHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHH
T ss_pred HHhcCCCcCCcEEhHHHHH--HHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHH
Confidence 1123445555542 3455786 899999999999999999999999998765
No 19
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=99.94 E-value=3.6e-26 Score=205.61 Aligned_cols=231 Identities=10% Similarity=0.111 Sum_probs=145.9
Q ss_pred CCCCCCceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH------
Q 022555 43 SKNFRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ------ 108 (295)
Q Consensus 43 ~~~~~~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~------ 108 (295)
++...+.+.+||||||.|+||+ ||+|++++|+|||+|+++++.++ ++++|+|+++ .+.+.+++..
T Consensus 8 ~~~~~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~l~~ 86 (297)
T 2ux8_A 8 SMTIKPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEA-GIEQMIFVTGRGKSALEDHFDIAYELEA 86 (297)
T ss_dssp --CCCCCCEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHTSCCHHHHH
T ss_pred cccccCccEEEEECCCCccccCccccCCCceeeeECCeEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhhhhhhh
Confidence 4455566789999999999995 89999999999999999999988 4999999998 4666665432
Q ss_pred -----------------cCCeE-EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCC--HHHHHHHHHHHHhCCC
Q 022555 109 -----------------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE--PEIIDGVVKALQAAPD 168 (295)
Q Consensus 109 -----------------~~~~v-~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~--~~~i~~li~~~~~~~d 168 (295)
.+..+ +..+....|...++..|+..+. .+.+++++||+|+ + +.+++++++.+.+...
T Consensus 87 ~l~~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~l~~l~~~~~~~~~ 163 (297)
T 2ux8_A 87 TMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVG--DEPFAVLLPDDFM-FGQPGCLKQMVDAYNKVGG 163 (297)
T ss_dssp HHHTTTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHC--SSCEEEECTTEEE-ESSSCHHHHHHHHHHHHCS
T ss_pred hhhhccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcC--CCcEEEEeCCeec-CCChHHHHHHHHHHHhcCC
Confidence 23344 2223333455567888888774 4789999999995 5 5789999998875433
Q ss_pred cEEEEeeeeCCCCCCCCCCceEEE-ECC--CC--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC
Q 022555 169 AVFSTAVTSLKPEDAFDPNRVKCV-VDN--HG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP 243 (295)
Q Consensus 169 ~~v~v~~~~~~~~~~~~p~~~~v~-~d~--~g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~ 243 (295)
..+++ .++.. .++..++++ .++ +| ++..|.+++.+ .....+.+++|+|+|++++|..+....+
T Consensus 164 ~~i~~--~~~~~---~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~-------~~~~~~~~~~Giyi~~~~~l~~l~~~~~ 231 (297)
T 2ux8_A 164 NLICA--EEVPD---DQTHRYGIITPGTQDGVLTEVKGLVEKPAP-------GTAPSNLSVIGRYILQPEVMRILENQGK 231 (297)
T ss_dssp EEEEE--C--------------CCCCCCBCSSEEEC---------------------CCCEEEEEEECTHHHHHHHHTC-
T ss_pred CEEEE--EecCc---ccCCCCCeEEecccCCCceeEEEEEECCCC-------CCCCccEEEEEEEEECHHHHHHHHhhCC
Confidence 33333 22211 123334433 232 45 77777776521 0112357899999999998876554432
Q ss_pred C---CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555 244 T---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 244 ~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r 292 (295)
+ +++.++.+. .++..| ++.+++.++.|+|||||+||..|+..+..+
T Consensus 232 ~~~~~~~l~d~i~--~l~~~~-~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~ 280 (297)
T 2ux8_A 232 GAGGEIQLTDAMQ--RMIGDQ-PFHGVTFQGTRYDCGDKAGFIQANLAVALS 280 (297)
T ss_dssp -------CCTTGG--GGTTTS-CEEEEECSSEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCCeeEHHHHHH--HHHhcC-CEEEEEecceEEeCCCHHHHHHHHHHHHhc
Confidence 2 334444443 233445 899999888999999999999999655443
No 20
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=99.94 E-value=3e-25 Score=200.03 Aligned_cols=218 Identities=13% Similarity=0.128 Sum_probs=153.9
Q ss_pred eEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-------------
Q 022555 50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ------------- 108 (295)
Q Consensus 50 i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~------------- 108 (295)
+.+||||||.|+||+ ||+|++++|+|||+|+++++.++ ++++|+|++++ +.+.+++..
T Consensus 9 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~ 87 (302)
T 2e3d_A 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVK 87 (302)
T ss_dssp CEEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----
T ss_pred cEEEEECCcCcccCCccccCCCceeeEECCeEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccc
Confidence 469999999999996 89999999999999999999988 49999999985 566655532
Q ss_pred ------------cCCeE-EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCC----HH---HHHHHHHHHHhCCC
Q 022555 109 ------------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE----PE---IIDGVVKALQAAPD 168 (295)
Q Consensus 109 ------------~~~~v-~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~----~~---~i~~li~~~~~~~d 168 (295)
.++++ +..+....|...++..|+..+. .+.+++++||+|+ + +. +++++++.+.+...
T Consensus 88 ~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~~~~~~l~~l~~~~~~~~~ 164 (302)
T 2e3d_A 88 RQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVIL-DEYESDLSQDNLAEMIRRFDETGH 164 (302)
T ss_dssp CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTEEE-CTTSSCTTTSTHHHHHHHHHHHCC
T ss_pred hhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcC--CCcEEEEcCCccc-cCccccchHHHHHHHHHHHHhcCC
Confidence 24554 2233333455567888888874 4679999999997 5 45 89999998875433
Q ss_pred cEEEEeeeeCCCCCCCCCCceEEEE-C----CCC---eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc
Q 022555 169 AVFSTAVTSLKPEDAFDPNRVKCVV-D----NHG---YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG 240 (295)
Q Consensus 169 ~~v~v~~~~~~~~~~~~p~~~~v~~-d----~~g---~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~ 240 (295)
.+++ +.++. ++..++++. + ++| ++..|.+++.+ .....+.+++|+|+|++++|..+..
T Consensus 165 ~~i~--~~~~~-----~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~-------~~~~~~~~~~Giyi~~~~~l~~l~~ 230 (302)
T 2e3d_A 165 SQIM--VEPVA-----DVTAYGVVDCKGVELAPGESVPMVGVVEKPKA-------DVAPSNLAIVGRYVLSADIWPLLAK 230 (302)
T ss_dssp EEEE--EEECS-----CGGGSEEEECTTCCCCTTCEEEECEEEESCCT-------TTCSCSEEEEEEEEECTTHHHHHTC
T ss_pred cEEE--EEEcc-----CCCCccEEEecccccCCCCceeEEEEEECCCC-------CccccceEEEEEEEECHHHHHHHHh
Confidence 3333 23331 223444443 2 466 78888887532 0112368899999999998876655
Q ss_pred CCCC---CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHH
Q 022555 241 LHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF 288 (295)
Q Consensus 241 ~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~l 288 (295)
..++ +++.++.+. .++..| ++.+++.+++|+|||||+||..|+..
T Consensus 231 ~~~~~~~~~~l~d~i~--~l~~~~-~v~~~~~~~~~~DIgt~~d~~~a~~~ 278 (302)
T 2e3d_A 231 TPPGAGDEIQLTDAID--MLIEKE-TVEAYHMKGKSHDCGNKLGYMQAFVE 278 (302)
T ss_dssp CCC----CCCHHHHHH--HHHHHS-CEEEEECCSCEEECSSHHHHHHHHHH
T ss_pred hCCCCCCceehHHHHH--HHHHhC-CEEEEEeCCeEEcCCCHHHHHHHHHH
Confidence 4332 333344432 234456 89999988899999999999999843
No 21
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=99.94 E-value=6.5e-25 Score=208.91 Aligned_cols=227 Identities=16% Similarity=0.162 Sum_probs=161.0
Q ss_pred eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcH
Q 022555 50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT 124 (295)
Q Consensus 50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~ 124 (295)
..+||||||.|+||+ ||+|++++|+|||+|+++++.++ ++++|+|+++. +++.+++.+ ++.++..+ ...|..
T Consensus 12 ~~~vIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iivv~~~~~~~i~~~~~~-~i~~v~~~-~~~G~~ 88 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLAG-QTEFVTQS-EQLGTG 88 (468)
T ss_dssp EEEEEECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTT-CCSEEEEEECTTHHHHHHSSSS-SSEEEECS-SCCCHH
T ss_pred CcEEEEcCCCCccCCCCCCcEeeEECCccHHHHHHHHHHhc-CCCCEEEEECCCHHHHHHHhCC-CcEEEeCC-ccCChH
Confidence 569999999999996 69999999999999999999988 49999999975 344333322 56665533 344556
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEEEee
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFS 203 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~~~~ 203 (295)
.+++.|++.+....+.+++++||+||+++++++++++.+.+.. +.+++...+.. +|..+ .+..|++|++..|.
T Consensus 89 ~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~-~~~~i~~~~~~-----~~~~~g~v~~d~~g~v~~~~ 162 (468)
T 1hm9_A 89 HAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHK-NVATILTAETD-----NPFGYGRIVRNDNAEVLRIV 162 (468)
T ss_dssp HHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTT-CSEEEEEEECS-----CCTTSCEEEECTTCCEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcC-CcEEEEEeccC-----CCCceeEEEECCCCCEEEEE
Confidence 7788888887522579999999999999999999999887642 22333334432 23333 34467789999988
Q ss_pred cCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCC----CCcccchhhhhhhhhCCceEEEEEecCCc--CCC
Q 022555 204 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPT----PLQLEEDLEQLKVLENGYKMKVIKVDHEA--HGV 276 (295)
Q Consensus 204 ~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~~~~--idI 276 (295)
+++.. +. .+...+..++|+|+|+++.|.. +...... ++..+|.+. .++..|.++..++.+++| +||
T Consensus 163 ek~~~--~~---~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~--~l~~~g~~v~~~~~~g~~~~i~i 235 (468)
T 1hm9_A 163 EQKDA--TD---FEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIG--IFRETGEKVGAYTLKDFDESLGV 235 (468)
T ss_dssp CTTTC--CT---TGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHH--HHHHHTCCEEEEECSSGGGGCCC
T ss_pred ECCCC--Ch---HHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHHHHHH--HHHHCCCEEEEEEcCChHHhhCC
Confidence 87421 00 1112468899999999996643 3333322 233344332 344568899999887666 567
Q ss_pred CCHHHHHHHHHHHHHh
Q 022555 277 DAPEDVEKIESFMRER 292 (295)
Q Consensus 277 dtpeDl~~ae~ll~~r 292 (295)
|||+||..|+.++..+
T Consensus 236 ~t~~dl~~a~~~~~~~ 251 (468)
T 1hm9_A 236 NDRVALATAESVMRRR 251 (468)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7999999999888654
No 22
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=1.3e-25 Score=204.54 Aligned_cols=226 Identities=12% Similarity=0.127 Sum_probs=155.7
Q ss_pred eEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-------------
Q 022555 50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ------------- 108 (295)
Q Consensus 50 i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~------------- 108 (295)
+.+||||||.|+||+ ||+|++++|+|||+|+++++.++ ++++|+|+++. +.+.+++..
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~ 91 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAEL-GATRLAIITAPNKAGVLAHFERSSELEETLMERGK 91 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTC
T ss_pred eEEEEECCCCccccCccccCCCceeeeECCEEHHHHHHHHHHhC-CCCEEEEEecCcHHHHHHHHhccchhhhhhhccch
Confidence 459999999999994 89999999999999999999987 49999999985 555544321
Q ss_pred -----------cCCeE-EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCC-HHHHHHHHHHHHhCCCcEEEEee
Q 022555 109 -----------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAV 175 (295)
Q Consensus 109 -----------~~~~v-~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~-~~~i~~li~~~~~~~d~~v~v~~ 175 (295)
.++.+ +..+....|...++..|+..+..+.+.+++++||+|+ + +.+++.+++.+.+.....+++
T Consensus 92 ~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~-- 168 (323)
T 2pa4_A 92 TDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCA-- 168 (323)
T ss_dssp HHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEE--
T ss_pred hhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEE--
Confidence 23444 2223333455567777777774333559999999999 6 689999999887653333333
Q ss_pred eeCCCCCCCCCCceEEE-EC----CCC--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---C
Q 022555 176 TSLKPEDAFDPNRVKCV-VD----NHG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---P 245 (295)
Q Consensus 176 ~~~~~~~~~~p~~~~v~-~d----~~g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~ 245 (295)
.++..+ ++..++++ .+ ++| ++..|.+++.+ .....+..++|+|+|++++|..+....++ +
T Consensus 169 ~~~~~~---~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~-------~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~~ge 238 (323)
T 2pa4_A 169 VEVSEA---DVSKYGIFEIEADTKDSDVKKVKGMVEKPAI-------EDAPSRLAATGRYLLDRKIFDALRRITPGAGGE 238 (323)
T ss_dssp EECCGG---GGGGSEEEEEEECCSSTTEEEEEEEEESCCT-------TTCSCSEEEEEEEEEETHHHHHHHHCCCCGGGC
T ss_pred EEeccc---ccCCccEEEeCCcccCCCceeEEEEEECCCC-------ccccccEEEEEEEEECHHHHHHHHhhCCCCCCe
Confidence 333211 12233332 34 454 88888887532 01123678999999999988766554332 2
Q ss_pred CcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHH
Q 022555 246 LQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 246 ~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~ 291 (295)
++.++.+. .++..|.++.+++.++.|+|||||+||..|+..+..
T Consensus 239 ~~l~d~i~--~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~ 282 (323)
T 2pa4_A 239 LQLTDAID--LLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGL 282 (323)
T ss_dssp CCHHHHHH--HHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHH
T ss_pred EeHHHHHH--HHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhh
Confidence 33344332 234567889999988899999999999999965543
No 23
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=99.94 E-value=6.2e-25 Score=197.54 Aligned_cols=222 Identities=18% Similarity=0.205 Sum_probs=154.3
Q ss_pred CCCCceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC---chHHHHHHHH---cCCe
Q 022555 45 NFRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQ---FGAD 112 (295)
Q Consensus 45 ~~~~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~---~~~i~~~~~~---~~~~ 112 (295)
|.+|+ +||||||.|+||+ ||+|++++|+|||+|+++.+..++ +++|+|+++ .+.+.+++.+ ++++
T Consensus 1 ~~~m~--aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~g-i~~Iivv~~~~~~~~i~~~l~~g~~~g~~ 77 (295)
T 1lvw_A 1 GAHMK--GIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAG-IRDILIISTPRDLPLYRDLLGDGSQFGVR 77 (295)
T ss_dssp CCSCE--EEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTSE
T ss_pred CCceE--EEEECCCCCCccccccCCCCceecEECCeeHHHHHHHHHHHCC-CCeEEEEeccchHHHHHHHhhhccccCce
Confidence 34554 9999999999997 799999999999999999999885 999998874 2456666643 5666
Q ss_pred EEe-CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceE
Q 022555 113 VIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVK 190 (295)
Q Consensus 113 v~~-~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~ 190 (295)
+.+ .++...|...++..|+..+. .+.++++.||+||.+ ..+.++++.+.+. .++.+ ...++ .+|..+.
T Consensus 78 i~~~~~~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v--~~~~v-----~dp~~~g 147 (295)
T 1lvw_A 78 FSYRVQEEPRGIADAFIVGKDFIG--DSKVALVLGDNVFYG-HRFSEILRRAASLEDGAVI--FGYYV-----RDPRPFG 147 (295)
T ss_dssp EEEEECSSCCCGGGHHHHTHHHHT--TSCEEEEETTCCEEC-TTHHHHHHHHHTCCSSEEE--EEEEC-----SCCTTSE
T ss_pred EEEeeCCCCCChHHHHHHHHHHhC--CCcEEEEECCccccC-cCHHHHHHHHHHcCCCcEE--EEEEC-----CCcccCC
Confidence 522 22233355567888888874 345666669999987 6899999988643 23333 23344 2344443
Q ss_pred -EEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEE
Q 022555 191 -CVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKV 266 (295)
Q Consensus 191 -v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~ 266 (295)
+..|++|++..|.++|. .+ ...+.++|+|+|+++++..+..+.++ +++.+|.+. .++..| ++.+
T Consensus 148 ~v~~d~~g~v~~~~ekp~-~~--------~s~~~~~Giy~f~~~~l~~~~~~~~~~~ge~~~td~~~--~~l~~g-~~~v 215 (295)
T 1lvw_A 148 VVEFDSEGRVISIEEKPS-RP--------KSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNE--EYLRMG-KLRV 215 (295)
T ss_dssp EEEECTTSBEEEEEESCS-SC--------SCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHH--HHHHTT-CEEE
T ss_pred EEEECCCCcEEEEEECCC-CC--------CCCEEEEEeEEEcHHHHHHHHhcCCcccCceeHHHHHH--HHHHcC-CcEE
Confidence 44588899999988752 11 13578899999999998766544332 344444331 234455 3455
Q ss_pred EEec-C-CcCCCCCHHHHHHHHHHHHH
Q 022555 267 IKVD-H-EAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 267 v~~~-~-~~idIdtpeDl~~ae~ll~~ 291 (295)
+... + .|+|||||+||..|+.+++.
T Consensus 216 ~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (295)
T 1lvw_A 216 ELMGRGMAWLDTGTHDGLLEASSFIET 242 (295)
T ss_dssp EEECTTCEECCCSSHHHHHHHHHHHHH
T ss_pred EEeCCCCeEEeCCCHHHHHHHHHHHHH
Confidence 5554 5 59999999999999988864
No 24
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=99.93 E-value=3e-24 Score=185.62 Aligned_cols=213 Identities=14% Similarity=0.158 Sum_probs=136.3
Q ss_pred CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCC-eEEeCCCCC
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGA-DVIMTSESC 120 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~-~v~~~~~~~ 120 (295)
.|++.+||||||+|+||+ ||+|++++|+|||+|+++++.+++.+++|+|+++. +.+.+ +.+++. .+.+.+ ..
T Consensus 4 ~~~~~aiIlA~G~g~R~~~~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~i~~~~-~~ 81 (231)
T 1vgw_A 4 KRKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAFPQVRVWKN-GG 81 (231)
T ss_dssp CCCEEEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHCTTSEEECC-CC
T ss_pred CCceEEEEEcccccccCCCCCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcCCCceEEEc-CC
Confidence 366889999999999997 79999999999999999999987669999999963 45555 444432 222222 22
Q ss_pred CCcHHHHHHHHHHccc-----cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECC
Q 022555 121 RNGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN 195 (295)
Q Consensus 121 ~g~~~~i~~al~~~~~-----~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~ 195 (295)
.+...++..|+..+.. +.+.+++++||+||+++++++++++.+.++.+..+.+ .+.. +.++. . +
T Consensus 82 ~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~--~~~~-------~~~~~-~-~ 150 (231)
T 1vgw_A 82 QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILA--VPVA-------DTLKR-A-E 150 (231)
T ss_dssp SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEE--EECC-------SCEEE-E-S
T ss_pred CcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEE--eecc-------cceEE-e-C
Confidence 3556678888887742 3589999999999999999999999887643233322 2321 12332 2 4
Q ss_pred CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCCCcccchhhhhhhh-hCCceEEEEEecCCc
Q 022555 196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEA 273 (295)
Q Consensus 196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~ 273 (295)
+|++. +.+ +|+ ........|+|+++.|..... ..... .++.. .++ ..|.++..++.+..|
T Consensus 151 ~g~i~---~~~---~~~-------~~~~~~~p~~f~~~~l~~~~~~~~~~g--~~~~~---~~~~~~~~~v~~v~~~~~~ 212 (231)
T 1vgw_A 151 SGQIS---ATV---DRS-------GLWQAQTPQLFQAGLLHRALAAENLGG--ITDEA---SAVEKLGVRPLLIQGDARN 212 (231)
T ss_dssp SSBEE---EEE---CCT-------TEEEEEEEEEEEHHHHHHHHHC----C--CCSHH---HHHHTTTCCCEEEECCTTC
T ss_pred CCceE---ecC---ChH-------HheeeeCCcEecHHHHHHHHHHHhhcC--CCcHH---HHHHHcCCCEEEEECCccc
Confidence 56543 221 121 122223479999987765332 11111 22221 122 247788888877899
Q ss_pred CCCCCHHHHHHHHHHHH
Q 022555 274 HGVDAPEDVEKIESFMR 290 (295)
Q Consensus 274 idIdtpeDl~~ae~ll~ 290 (295)
+|||||+||+.|+++++
T Consensus 213 ~dIdtpeDl~~a~~~l~ 229 (231)
T 1vgw_A 213 LKLTQPQDAYIVRLLLD 229 (231)
T ss_dssp CCCCSHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHh
Confidence 99999999999998764
No 25
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=99.93 E-value=1.2e-24 Score=206.30 Aligned_cols=227 Identities=13% Similarity=0.212 Sum_probs=161.0
Q ss_pred CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCC
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR 121 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~ 121 (295)
+|++.+||||||.|+||+ ||+|++++|+|||+|+++++.+++ +++|+|++++ +++.+++.++++.++..+ ...
T Consensus 3 ~~~~~aiIlA~G~g~Rl~~~~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~~~i~~~~~~~~~~~v~~~-~~~ 80 (456)
T 2v0h_A 3 KKALSAVILAAGKGTRMYSDLPKVLHTIAGKPMVKHVIDTAHQLG-SENIHLIYGHGGDLMRTHLANEQVNWVLQT-EQL 80 (456)
T ss_dssp -CCEEEEEECCCCCGGGCSSSCGGGSEETTEEHHHHHHHHHHHTT-CSCEEEEECTTHHHHHHHTTTCCCEEEECS-CCC
T ss_pred CCcceEEEECCCCCcccCCCCCccccEECCccHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhhcCCcEEEeCC-CCC
Confidence 367889999999999996 799999999999999999999885 9999999985 455555555567765543 334
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEE
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAI 200 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~ 200 (295)
|...+++.+++.+. +.+.+++++||+||+++++++++++.+.+ .+.. +...+.. +|..+ .+..+ +|++.
T Consensus 81 g~~~~~~~~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~-~~~~--~~~~~~~-----~~~~~g~v~~~-~g~v~ 150 (456)
T 2v0h_A 81 GTAHAVQQAAPFFK-DNENIVVLYGDAPLITKETLEKLIEAKPE-NGIA--LLTVNLD-----NPTGYGRIIRE-NGNVV 150 (456)
T ss_dssp CHHHHHHHHGGGCC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT-TSEE--EEEEECS-----SCTTSCEEEEE-TTEEE
T ss_pred CcHHHHHHHHHhcC-CCCeEEEEcCCcceeCHHHHHHHHHHHhc-CCEE--EEEeecC-----CCCccceEEEc-CCcEE
Confidence 55678888888874 25799999999999999999999998765 3333 3223332 23222 33345 78888
Q ss_pred EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCC----CCcccchhhhhhhhhCCceEEEEEecC--Cc
Q 022555 201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPT----PLQLEEDLEQLKVLENGYKMKVIKVDH--EA 273 (295)
Q Consensus 201 ~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~~--~~ 273 (295)
.|.+++.. + ..++..+..++|+|+|+++.|.. +...... ++..++.+. .+...|.++..++.++ .+
T Consensus 151 ~~~ek~~~--~---~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~--~~~~~g~~v~~~~~~~~~~~ 223 (456)
T 2v0h_A 151 AIVEQKDA--N---AEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIA--LANQDNCQVVAVQATDVMEV 223 (456)
T ss_dssp EEECTTTC--C---HHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCGGGHHH--HHHHTTCCEEEEECSCTGGG
T ss_pred EEEECCCC--C---hhHhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEEHHHHHH--HHHHcCCEEEEEEeCCcceE
Confidence 88775321 0 01122468899999999987654 3332221 233344332 2345688899998853 47
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 022555 274 HGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 274 idIdtpeDl~~ae~ll~~r 292 (295)
++||||+||+.|+.++..+
T Consensus 224 ~~I~tpeDl~~a~~~l~~~ 242 (456)
T 2v0h_A 224 EGANNRLQLAALERYFQNK 242 (456)
T ss_dssp CCCSSHHHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHH
Confidence 8999999999999988765
No 26
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=99.93 E-value=9.9e-26 Score=195.91 Aligned_cols=217 Identities=11% Similarity=0.173 Sum_probs=144.0
Q ss_pred CCCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCC-eE-EeCCC
Q 022555 46 FRSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGA-DV-IMTSE 118 (295)
Q Consensus 46 ~~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~-~v-~~~~~ 118 (295)
.||++.+||||||+|+||+ +|+|++++|+|||+|+++++.+++.+++|+|++++ +.+.+ +..++. .+ +..+
T Consensus 4 ~~~~~~~iIlA~G~g~R~~~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~v~~~~~- 81 (236)
T 1i52_A 4 THLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPLANHPQITVVDG- 81 (236)
T ss_dssp -CCCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGGGGCTTEEEEEC-
T ss_pred CCCceeEEEECCcCccccCCCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHhcCCCCEEEECC-
Confidence 4678999999999999998 89999999999999999999987668999999973 34444 333332 22 2222
Q ss_pred CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCC-C
Q 022555 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH-G 197 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~-g 197 (295)
..+...++..|+..+. +.+.+++++||+||++++.++++++.+.+..+..+.+ .+.. +.++. .+++ |
T Consensus 82 -~~g~~~~i~~al~~~~-~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~--~~~~-------~~~~~-~~~~~~ 149 (236)
T 1i52_A 82 -GDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILA--APVR-------DTMKR-AEPGKN 149 (236)
T ss_dssp -CSSHHHHHHHHHHTST-TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEE--EECC-------SCEEE-ECTTSS
T ss_pred -CCCHHHHHHHHHHhcC-CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeEEEE--Eecc-------ccEEE-EcCCCC
Confidence 1356678899998874 3589999999999999999999999876543122222 2221 12333 3444 4
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCC
Q 022555 198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHG 275 (295)
Q Consensus 198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~id 275 (295)
.+.. +. ++... +..-+.++|+...+.... .........++.. .++ ..|.++..++.+..|+|
T Consensus 150 ~i~~----~~--~~~~i-------~~~~~p~~f~~~~l~~~~~~~~~~g~~~td~~---~~~~~~~~~v~~v~~~~~~~d 213 (236)
T 1i52_A 150 AIAH----TV--DRNGL-------WHALTPQFFPRELLHDCLTRALNEGATITDEA---SALEYCGFHPQLVEGRADNIK 213 (236)
T ss_dssp SEEE----EE--CCTTC-------EEEEEEEEEEHHHHHHHHHHHHHTTCCCCSHH---HHHHHTTCCCEEEECCTTCCC
T ss_pred ceee----cc--ChHhh-------eeeeCCceecHHHHHHHHHHHHhcCCCcccHH---HHHHHcCCCEEEEecCccccc
Confidence 5431 11 22111 111245889887665422 1111111223221 222 25778888888788999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 022555 276 VDAPEDVEKIESFMRER 292 (295)
Q Consensus 276 IdtpeDl~~ae~ll~~r 292 (295)
||||+||+.|++++++|
T Consensus 214 IdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 214 VTRPEDLALAEFYLTRT 230 (236)
T ss_dssp CCSHHHHHHHHHHHCC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998766
No 27
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=99.93 E-value=8e-25 Score=196.91 Aligned_cols=218 Identities=18% Similarity=0.186 Sum_probs=152.1
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC---chHHHHHHHH---cCCeEEe-CC
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQ---FGADVIM-TS 117 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~---~~~i~~~~~~---~~~~v~~-~~ 117 (295)
.+||||||.|+||+ ||+|++++|+|||+|+++++..++ +++|+|+++ .+.+.+++.+ +++++.+ .+
T Consensus 5 ~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~ 83 (296)
T 1mc3_A 5 KGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAG-IREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQ 83 (296)
T ss_dssp EEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEEC
T ss_pred EEEEECCCCCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhCC-CCcEEEEechhHHHHHHHHHhcccccCceEEEecc
Confidence 49999999999996 899999999999999999999874 999998874 2456666643 5666522 22
Q ss_pred CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceE-EEECC
Q 022555 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVK-CVVDN 195 (295)
Q Consensus 118 ~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~-v~~d~ 195 (295)
+...|...++..|+..+. .+.++++.||+||.+ ..+.++++.+.+. .++.+ ...++. +|..++ +..|+
T Consensus 84 ~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v--~~~~v~-----dp~~yg~v~~d~ 153 (296)
T 1mc3_A 84 PSPDGLAQAFIIGETFLN--GEPSCLVLGDNIFFG-QGFSPKLRHVAARTEGATV--FGYQVM-----DPERFGVVEFDD 153 (296)
T ss_dssp SSCCCSTHHHHHTHHHHT--TSCEEEEETTEEEEC-SSCHHHHHHHTTCCSSEEE--EEEECS-----CCSSSBBCEEET
T ss_pred CCCCCHHHHHHHHHHHhC--CCCEEEEECCccccc-cCHHHHHHHHHHcCCCCEE--EEEECC-----CcccCCEEEECC
Confidence 233345567888888874 345666669999987 5789999888542 33333 233432 344443 34578
Q ss_pred CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEec-C
Q 022555 196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVD-H 271 (295)
Q Consensus 196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~-~ 271 (295)
+|++..|.++|.. + ...+.++|+|+|+++++..+..+.++ +++.++.+. .++..| ++.++..+ +
T Consensus 154 ~g~v~~~~ekp~~-~--------~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~--~~l~~g-~~~v~~~~~g 221 (296)
T 1mc3_A 154 NFRAISLEEKPKQ-P--------KSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQ--MYLEAG-NLTVELLGRG 221 (296)
T ss_dssp TEEEEECCBSCSS-C--------SCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHH--HHHHTT-CEEEEECCTT
T ss_pred CCcEEEEEECCCC-C--------CCCEEEEEEEEEcHHHHHHHHhcCccccCCccHHHHHH--HHHhcC-CeEEEEeCCC
Confidence 8999988887521 1 13588999999999998876554432 344444321 234455 45666554 5
Q ss_pred -CcCCCCCHHHHHHHHHHHHH
Q 022555 272 -EAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 272 -~~idIdtpeDl~~ae~ll~~ 291 (295)
.|+|||||+||..|+.+++.
T Consensus 222 ~~w~Digt~edl~~a~~~~~~ 242 (296)
T 1mc3_A 222 FAWLDTGTHDSLIEASTFVQT 242 (296)
T ss_dssp CEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEeCCCHHHHHHHHHHHHH
Confidence 49999999999999988764
No 28
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=99.92 E-value=1.6e-24 Score=187.76 Aligned_cols=213 Identities=16% Similarity=0.222 Sum_probs=136.6
Q ss_pred eEEEEEcCCCCCCCCC----ccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcCCeE----EeCCC
Q 022555 50 VVGIIPARFASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADV----IMTSE 118 (295)
Q Consensus 50 i~aiIlAaG~gsRl~~----K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~~~v----~~~~~ 118 (295)
+.+||||||+|+||++ |+|++++|+|||+|+++++.+++.+++|+|+++++. +.++++++++.+ ...+
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 81 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITK- 81 (236)
T ss_dssp EEEEEEEC-----------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEE-
T ss_pred eEEEEeCCccccccCCCCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEEC-
Confidence 5799999999999964 999999999999999999998766999999998654 666666666211 1111
Q ss_pred CCCCcHHHHHHHHHHcc---c--cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEE
Q 022555 119 SCRNGTERCNEALQKLE---K--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV 193 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~---~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~ 193 (295)
...+...++..|+..+. . +.+.+++++||+||+++++++++++.+.+. ++.+.+ .++. + .++.
T Consensus 82 ~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~-~~~~~~--~~~~-----~--~~~~-- 149 (236)
T 2vsh_A 82 GGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNH-DAVDTV--VEAV-----D--TIVE-- 149 (236)
T ss_dssp CCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHS-SEEEEE--EECC-----S--CEEE--
T ss_pred CCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhc-CcEEEE--Eecc-----c--cEEE--
Confidence 11345567888888774 1 347899999999999999999999998765 322222 3331 1 2332
Q ss_pred CCCC-eEEEeecCCCCCCCCCCCCCCCCceEE-EeEEEecHHHHhh-cccCCCCCCc-ccchhhhhhhhhCCceEEEEEe
Q 022555 194 DNHG-YAIYFSRGLIPYNKSGKVNPQFPYLLH-LGIQSYDSNFLKI-YPGLHPTPLQ-LEEDLEQLKVLENGYKMKVIKV 269 (295)
Q Consensus 194 d~~g-~v~~~~~~~i~~~r~~~~~~~~p~~~~-~Giyif~~~~l~~-~~~~~~~~~~-~~d~~~~~~~~~~G~~v~~v~~ 269 (295)
+++| ++..+.++ +.... ...|+|+++.+.. +......... .++... .+...|.++..++.
T Consensus 150 ~~~g~~~~~~~~~--------------~~~~~~~~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~--~l~~~~~~v~~~~~ 213 (236)
T 2vsh_A 150 STNGQFITDIPNR--------------AHLYQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACK--IFVIKGKDVALAKG 213 (236)
T ss_dssp CSSSSBCCBCCCG--------------GGEEEEEEEEEEEHHHHHHHHHTCCHHHHHHCCSHHH--HHHHTTCCEEEEEC
T ss_pred eCCCCeeeeecCh--------------HHheeecCCcEecHHHHHHHHHHHHhcCCCcCCCHHH--HHHHcCCCEEEEEC
Confidence 3566 65433221 11222 2368999987764 3222111111 222211 12236788999988
Q ss_pred cCCcCCCCCHHHHHHHHHHHHH
Q 022555 270 DHEAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 270 ~~~~idIdtpeDl~~ae~ll~~ 291 (295)
+..|+|||||+||..|+.++++
T Consensus 214 ~~~~~dIdtpeDl~~a~~~~~~ 235 (236)
T 2vsh_A 214 EYSNLKITTVTDLKIAKSMIEK 235 (236)
T ss_dssp CTTCCCCCSHHHHHHHHHHTC-
T ss_pred CccccCcCCHHHHHHHHHHhhc
Confidence 7899999999999999988753
No 29
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=99.92 E-value=3.7e-24 Score=193.62 Aligned_cols=234 Identities=10% Similarity=0.148 Sum_probs=136.0
Q ss_pred CceEEEEEcCCCCCCCC-------Ccccccc-CCcchHHHHHHHHhhCCCCCeEEEECCch---HHHHHHHH-cCC-eE-
Q 022555 48 SRVVGIIPARFASSRFE-------GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ-FGA-DV- 113 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~-------~K~l~~i-~gkpLl~~~l~~l~~~~~i~~IvVv~~~~---~i~~~~~~-~~~-~v- 113 (295)
|++.+||||||.|+||. ||+|+++ +|+|||+|+++++.++ +++|+|+++.+ .+.+.+.. +++ .+
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~ 80 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNEIKNKSVG 80 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTTCSSCEEE
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHhhCCCccE
Confidence 45779999999999992 8999999 5999999999999876 89999999853 55566655 555 43
Q ss_pred EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHH---HHhCCCcEEEEeeeeCCCCCCCCCCceE
Q 022555 114 IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA---LQAAPDAVFSTAVTSLKPEDAFDPNRVK 190 (295)
Q Consensus 114 ~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~---~~~~~d~~v~v~~~~~~~~~~~~p~~~~ 190 (295)
+..++...|...++..++..+. ..+.+++++||+|+++.+.++++++. +.+. +..+++.+.+.. ++..++
T Consensus 81 ~i~~~~~~gt~~al~~a~~~l~-~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~-----~~~~~g 153 (308)
T 2qh5_A 81 FLLESLSKNTANAIALSALMSD-KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQK-GFLVTFGVSIDK-----PNTEFG 153 (308)
T ss_dssp EEEESSCCCHHHHHHHHHHTSC-TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHT-TCEEEEEEECSS-----CCTTSE
T ss_pred EEeCCCCCChHHHHHHHHHHhC-CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhc-CCEEEEEEecCC-----CCCCce
Confidence 2222233354566788887773 23569999999998888889999987 4443 344444444432 122344
Q ss_pred EE-ECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHh-hcccCCCC--------------C----Cccc-
Q 022555 191 CV-VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK-IYPGLHPT--------------P----LQLE- 249 (295)
Q Consensus 191 v~-~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~-~~~~~~~~--------------~----~~~~- 249 (295)
++ .+++|++..|.+++.+ .+......+..+.+++|+|+|++++|. .+.+..++ + +++.
T Consensus 154 ~i~~d~~~~V~~~~Ekp~~-~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~ 232 (308)
T 2qh5_A 154 YIESPNGLDVKRFIEKPSL-DKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIAR 232 (308)
T ss_dssp EEECSSSSBCSEEEESCCH-HHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEE
T ss_pred EEEECCCCEEEEEEECCCh-HHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhh
Confidence 33 4657899999887532 100000001136899999999998752 23222111 0 2221
Q ss_pred ---chhhh-------hhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHH
Q 022555 250 ---EDLEQ-------LKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 291 (295)
Q Consensus 250 ---d~~~~-------~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~ 291 (295)
+.+.. ..+++.|.+|.+++.+.+|.|||||+||..++..-..
T Consensus 233 ~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~~~ 284 (308)
T 2qh5_A 233 LSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANEPK 284 (308)
T ss_dssp ECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC----------------
T ss_pred hhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcCcC
Confidence 11110 0245678899999998999999999999998876543
No 30
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=99.92 E-value=1.3e-23 Score=181.98 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHH--cCCeEEeCCCCCCCcH
Q 022555 50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ--FGADVIMTSESCRNGT 124 (295)
Q Consensus 50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~--~~~~v~~~~~~~~g~~ 124 (295)
+.+||||||+|+||+ +|+|++++|+|||+|+++++++++.+++|+|+++++....+.+. ++..+... ....+..
T Consensus 14 ~~aiILAaG~s~Rm~~~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~-~gg~~~~ 92 (234)
T 1vpa_A 14 NVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIV-EGGDTRS 92 (234)
T ss_dssp EEEEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEEEE-ECCSSHH
T ss_pred CeEEEEcCcchhhcCCCCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhccCCceEEe-CCCCcHH
Confidence 569999999999997 89999999999999999999988668999999986543221211 12222111 0101134
Q ss_pred HHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEee
Q 022555 125 ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFS 203 (295)
Q Consensus 125 ~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~ 203 (295)
.++..|+..+.. +.+.+++++||+||+++++++++++.+.++ ++.+++ .++. +.++. .+++| + .+.
T Consensus 93 ~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~-~~~i~~--~~~~-------~~~~~-~~~~g-v-~~~ 159 (234)
T 1vpa_A 93 QSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARET-GAATLA--LKNS-------DALVR-VENDR-I-EYI 159 (234)
T ss_dssp HHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHH-SEEEEE--EECC-------SEEEE-EETTE-E-EEE
T ss_pred HHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhc-CCEEEE--EecC-------CcEEE-ECCCC-c-ccC
Confidence 568888888743 357899999999999999999999988654 333322 2321 12333 35566 4 332
Q ss_pred cCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCCCHHHH
Q 022555 204 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAPEDV 282 (295)
Q Consensus 204 ~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idIdtpeDl 282 (295)
+ |+. .+..-..++|+...+..+.... ...++.. .++ ..|.++..++.+..|+|||||+||
T Consensus 160 ~------r~~-------~~~~~~p~~f~~~~l~~~~~~~---~~~~~~~---~~~~~~g~~v~~v~~~~~~~dIdtpeDl 220 (234)
T 1vpa_A 160 P------RKG-------VYRILTPQAFSYEILKKAHENG---GEWADDT---EPVQKLGVKIALVEGDPLCFKVTFKEDL 220 (234)
T ss_dssp C------CTT-------EEEEEEEEEEEHHHHHHHHTTC---CCCSSSH---HHHHTTTCCCEEEECCGGGCCCCSTTHH
T ss_pred C------hhH-------eeeecCCccccHHHHHHHHHhc---CCCCcHH---HHHHHcCCcEEEEECCchhcCCCCHHHH
Confidence 2 211 1111133789988776543321 1112211 122 257788888876789999999999
Q ss_pred HHHHHHHHHhc
Q 022555 283 EKIESFMRERN 293 (295)
Q Consensus 283 ~~ae~ll~~r~ 293 (295)
+.|++++++++
T Consensus 221 ~~a~~~l~~~~ 231 (234)
T 1vpa_A 221 ELARIIAREWE 231 (234)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhccc
Confidence 99999998875
No 31
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=99.92 E-value=1.4e-23 Score=177.03 Aligned_cols=189 Identities=18% Similarity=0.244 Sum_probs=136.5
Q ss_pred CceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcH
Q 022555 48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT 124 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~ 124 (295)
|++.+||||||+|+||+ +|++++++|+|||+|+++++.+++ +++|+|++++ +.+.+++..+++.++.++....|..
T Consensus 4 ~~~~~iIlA~G~~~R~g~~K~l~~~~g~pli~~~l~~l~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (199)
T 2waw_A 4 SRVTGVVLAAGYSRRLGTPKQLLPLGDTTLLGATLAMARRCP-FDQLIVTLGGAADEVLEKVELDGLDIVLVDDAGLGCS 82 (199)
T ss_dssp CCEEEEEEESSCCTTTTSCGGGCEETTEEHHHHHHHHHHTSS-CSEEEEEECTTHHHHHHHSCCTTSEEEECCCCCTTCC
T ss_pred CceEEEEECCCCCCCCCCCEEeCEeCccCHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHH
Confidence 56889999999999995 899999999999999999999885 8999999974 4555555556788776544444556
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeec
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR 204 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~ 204 (295)
.++..|+..+..+.+.+++++||+||+++++++++++. ..+. .+.+.. . +|..
T Consensus 83 ~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~-~~~~--~~~~~~-----------------~--~g~~----- 135 (199)
T 2waw_A 83 SSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG-GRGA--TIAVCE-----------------Y--ANGI----- 135 (199)
T ss_dssp CHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH-HTTC--SEEEEE-----------------E--TTEE-----
T ss_pred HHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh-cCCC--CEEEEe-----------------c--CCcc-----
Confidence 78999998874235899999999999999999999987 4322 222211 0 1110
Q ss_pred CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhh-CCceEEEEEec-CCcCCCCCHHHH
Q 022555 205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVD-HEAHGVDAPEDV 282 (295)
Q Consensus 205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~-~G~~v~~v~~~-~~~idIdtpeDl 282 (295)
..| ++|+++.+....... .+.. ...++. .|.++..++.+ ..++|||||+||
T Consensus 136 -------------~~P-------~~~~~~~l~~~~~~~-~~~~------~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl 188 (199)
T 2waw_A 136 -------------GHP-------FWVSRGVFGDLAELH-GDKG------VWRLIESGRHGVRRIRVDADVPLDVDTWDDY 188 (199)
T ss_dssp -------------EEE-------EEEEGGGHHHHHTCS-STTC------HHHHHHSSSSCEEEEECSSCCCCCCSSHHHH
T ss_pred -------------cCC-------EEEcHHHHHHHHhcC-CCHH------HHHHHHhCcccEEEEEcCcccccCCCCHHHH
Confidence 013 578887776544321 1111 112233 46678888875 589999999999
Q ss_pred HHHHHHHHH
Q 022555 283 EKIESFMRE 291 (295)
Q Consensus 283 ~~ae~ll~~ 291 (295)
..++++++.
T Consensus 189 ~~~~~~~~~ 197 (199)
T 2waw_A 189 ERLLASVVR 197 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998863
No 32
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=99.92 E-value=1.8e-24 Score=188.39 Aligned_cols=208 Identities=15% Similarity=0.204 Sum_probs=134.4
Q ss_pred CceEEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555 48 SRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE 125 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~ 125 (295)
|++.+||||||+|+||+ +|+|++++|+|||+|++++ . ..+++|+|++++ .+.+ ++..++.++.. ..+...
T Consensus 24 M~~~aiILAgG~s~Rm~~~~K~l~~i~gkpli~~~l~~--~-~~~~~ivvv~~~-~~~~-~~~~~v~~~~~---~~~~~~ 95 (236)
T 2px7_A 24 MEVSVLIPAAGNGLRLGRGPKAFLQVGGRTLLEWTLAA--F-RDAAEVLVALPP-GAEP-PKGLGAVFLEG---GATRQA 95 (236)
T ss_dssp CCCEEEEECCC-------CCGGGCBCSSSBHHHHHHHH--T-TTCSEEEEEECT-TCCC-CTTCSCEEEEC---CSSHHH
T ss_pred CceEEEEEcCCCCccCCCCCCeEEEECCEEHHHHHHHh--c-CCCCeEEEEeCH-HHHH-hhcCCcEEEeC---CCchHH
Confidence 67889999999999997 8999999999999999999 3 368999999986 3333 33334554422 224567
Q ss_pred HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecC
Q 022555 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG 205 (295)
Q Consensus 126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~ 205 (295)
++..|+..+. .+.+++++||+||+++++++.+++.+.+. ++.+++ .+.. +..++ .+ +|++..+.+
T Consensus 96 ~i~~al~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~~~-~~~i~~--~~~~-------~~~~~-~~-~G~v~~~~~- 160 (236)
T 2px7_A 96 SVARLLEAAS--LPLVLVHDVARPFVSRGLVARVLEAAQRS-GAAVPV--LPVP-------DTLMA-PE-GEAYGRVVP- 160 (236)
T ss_dssp HHHHHHHHCC--SSEEEECCTTCCCCCHHHHHHHHHHHHHH-SEEEEE--EECC-------SEEEE-EC-SSSCEEEEC-
T ss_pred HHHHHHHHcC--CCeEEEecCccccCCHHHHHHHHHHHHhc-CCeEEE--EecC-------CcEEE-ec-CCeEEecCC-
Confidence 8899998874 57899999999999999999999988654 443332 2321 12333 34 676543322
Q ss_pred CCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCCCHHHHH
Q 022555 206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAPEDVE 283 (295)
Q Consensus 206 ~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idIdtpeDl~ 283 (295)
|+..+..+.| ++|+++.|..... .....+..++.. .++ ..|.++..++.+..|+|||||+||+
T Consensus 161 -----~~~~~~~~~~-------~~f~~~~l~~~~~~~~~~g~~~~d~~---~ll~~~~~~v~~v~~~~~~~dIdtpeDl~ 225 (236)
T 2px7_A 161 -----REAFRLVQTP-------QGFFTALLREAHAYARRKGLEASDDA---QLVQALGYPVALVEGEATAFKITHPQDLV 225 (236)
T ss_dssp -----GGGCEEECSC-------EEEEHHHHHHHHHHHHHHTCCCSSHH---HHHHHTTCCCEEEECCTTCCCCCSHHHHH
T ss_pred -----hHhhccccCC-------eEEcHHHHHHHHHHHHhcCCCchhHH---HHHHHcCCcEEEEECCccccCCCCHHHHH
Confidence 2111112234 7888887654221 110112222221 222 2577888888878999999999999
Q ss_pred HHHHHHHHhc
Q 022555 284 KIESFMRERN 293 (295)
Q Consensus 284 ~ae~ll~~r~ 293 (295)
.|++++++|+
T Consensus 226 ~a~~~l~~~~ 235 (236)
T 2px7_A 226 LAEALARVWS 235 (236)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHhcc
Confidence 9999998764
No 33
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=99.92 E-value=7.4e-24 Score=186.25 Aligned_cols=217 Identities=14% Similarity=0.156 Sum_probs=145.9
Q ss_pred CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc-----CCeE-
Q 022555 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-----GADV- 113 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~-----~~~v- 113 (295)
|++.+||||||.|+||+ ||+|++++|+|||+|+++++.+++ +++|+|+++ .+.+.+++.++ ++.+
T Consensus 1 m~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (259)
T 1tzf_A 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHG-IKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CCcEEEEECCCCcccCCCccCCCCccccEECCEEHHHHHHHHHHHCC-CCEEEEEcccCHHHHHHHHhhccccccccccc
Confidence 45679999999999996 799999999999999999999885 999999996 35666666432 3332
Q ss_pred -------EeCC------------CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEe
Q 022555 114 -------IMTS------------ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA 174 (295)
Q Consensus 114 -------~~~~------------~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~ 174 (295)
+.++ ....|...++..|+..+. ..+.+++++||+ +. +.+++++++.+.++. +.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~-~~~t~~ 155 (259)
T 1tzf_A 80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-DDEAFLFTYGDG-VA-DLDIKATIDFHKAHG-KKATLT 155 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-TSSCEEEEETTE-EE-CCCHHHHHHHHHHHC-CSEEEE
T ss_pred ccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-CCCcEEEEECCE-ec-ccCHHHHHHHHHHhC-CeEEEE
Confidence 2111 112233456777777763 246799999999 43 467999999886532 233332
Q ss_pred eeeCCCCCCCCCCceE-EEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhh
Q 022555 175 VTSLKPEDAFDPNRVK-CVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLE 253 (295)
Q Consensus 175 ~~~~~~~~~~~p~~~~-v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~ 253 (295)
..+ +|..++ +..+ +|++..|.+++.+ ..+.+++|+|+|++++|..+... ...++ ++.+.
T Consensus 156 ~~~-------~~~~~g~v~~~-~g~v~~~~ekp~~----------~~~~~~~Giy~~~~~~l~~l~~~-~~~~~-~~~i~ 215 (259)
T 1tzf_A 156 ATF-------PPGRFGALDIQ-AGQVRSFQEKPKG----------DGAMINGGFFVLNPSVIDLIDND-ATTWE-QEPLM 215 (259)
T ss_dssp EEC-------CCCCSEEEEEE-TTEEEEEEESCSC----------CSCCEECCCEEECGGGGGGCCST-TCCTT-THHHH
T ss_pred Eec-------CCCCccEEEEc-CCEEEEEEecCCC----------CCceEEEEEEEeCHHHHHhhccc-ccccH-HHHHH
Confidence 221 223344 3456 8899999887521 13578999999999988644221 11122 23332
Q ss_pred hhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555 254 QLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 254 ~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r 292 (295)
.++..| ++.+++.+++|.|||||+||..++.++.+.
T Consensus 216 --~~~~~~-~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~ 251 (259)
T 1tzf_A 216 --TLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKG 251 (259)
T ss_dssp --HHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHTT
T ss_pred --HHHHcC-CEEEEEeCcEEEeCCCHHHHHHHHHHHhcC
Confidence 234455 688888888999999999999999988753
No 34
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=99.91 E-value=1.3e-24 Score=191.45 Aligned_cols=211 Identities=17% Similarity=0.167 Sum_probs=145.7
Q ss_pred CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCCCC
Q 022555 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSES 119 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~ 119 (295)
|++.+||||||.|+||+ ||+|++++|+|||+|+++++.+++ +++|+|+++ .+.+..+.+.+++.++.+++.
T Consensus 24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~~~i~~~~~~~~~~iv~~~~~ 102 (254)
T 1jyk_A 24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKG-INDIIIIVGYLKEQFDYLKEKYGVRLVFNDKY 102 (254)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTT-CCCEEEEECTTGGGGTHHHHHHCCEEEECTTT
T ss_pred cCceEEEECCCCcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHCC-CCeEEEEeCCcHHHHHHHHHhCCcEEEECCCc
Confidence 46789999999999997 899999999999999999999884 999999997 456666666678888776543
Q ss_pred CC-CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCC-CceEEEECCCC
Q 022555 120 CR-NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHG 197 (295)
Q Consensus 120 ~~-g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p-~~~~v~~d~~g 197 (295)
.. |...++..|+..+. + +++++||+|+.. +.++.++ +. +..+++. .. +| ..++++.|++|
T Consensus 103 ~~~g~~~al~~a~~~~~---~-~lv~~~D~~~~~-~~~~~~~----~~-~~~~t~~---~~-----~~~~~~~v~~d~~g 164 (254)
T 1jyk_A 103 ADYNNFYSLYLVKEELA---N-SYVIDADNYLFK-NMFRNDL----TR-STYFSVY---RE-----DCTNEWFLVYGDDY 164 (254)
T ss_dssp TTSCTHHHHHTTGGGCT---T-EEEEETTEEESS-CCCCSCC----CS-EEEEECE---ES-----SCSSCCEEEECTTC
T ss_pred cCCCcHHHHHHHHHHCC---C-EEEEeCCcccCH-HHHHHHH----hC-CceEEEE---cc-----cCCCCeEEEECCCC
Confidence 33 44466777776652 3 789999999987 5544433 22 2333332 11 22 23556678889
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc----cCCC----CCCcccchhhhhhhhhCCceEEEEEe
Q 022555 198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP----GLHP----TPLQLEEDLEQLKVLENGYKMKVIKV 269 (295)
Q Consensus 198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~----~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~ 269 (295)
++..|.+++ ...++++|+|+|+++.+..+. ...+ .+...++. ...+..|.++.+++.
T Consensus 165 ~v~~~~e~~------------~~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~~~d~---~~~l~~~~~v~~~~~ 229 (254)
T 1jyk_A 165 KVQDIIVDS------------KAGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNM---VKDNIKELDVYVEEL 229 (254)
T ss_dssp BEEEEECCC------------SSEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHH---HHTTGGGCCEEEEEC
T ss_pred eEEEEEECC------------CCCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccCHHHH---HHHHHhhCCeEEEEe
Confidence 999887752 135789999999987543211 1101 11111221 122345778999888
Q ss_pred c-CCcCCCCCHHHHHHHHHHHHHh
Q 022555 270 D-HEAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 270 ~-~~~idIdtpeDl~~ae~ll~~r 292 (295)
+ ..|++||||+||..|+.++++.
T Consensus 230 ~~~~~~~Idt~edl~~a~~~l~~~ 253 (254)
T 1jyk_A 230 EGNSIYEIDSVQDYRKLEEILKNE 253 (254)
T ss_dssp CTTSEEECCSHHHHHHHHHHHC--
T ss_pred cCCeEEEcCCHHHHHHHHHHhhhc
Confidence 7 7999999999999999998764
No 35
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=99.91 E-value=1.1e-23 Score=198.17 Aligned_cols=240 Identities=14% Similarity=0.137 Sum_probs=156.5
Q ss_pred eeCCCCCCCC-ceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH
Q 022555 39 YLGRSKNFRS-RVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ 108 (295)
Q Consensus 39 ~~~~~~~~~~-~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~ 108 (295)
|+..+...|| ++.+||||||.|+||+ ||+|++++|+ |||+|+++++.+++ +++|+|++++ +.+.+++.+
T Consensus 1 ~~~~~~~~mm~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~~~~ 79 (420)
T 3brk_X 1 MSEKRVQPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSG-IRRIGVATQYKAHSLIRHLQR 79 (420)
T ss_dssp ------CCGGGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTT-CCEEEEEECTTCHHHHHHHHH
T ss_pred CCcccchhhhhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCC-CCeEEEEeCCChHHHHHHHhh
Confidence 3334444555 4889999999999997 8999999999 99999999999884 9999999985 667776654
Q ss_pred -cCC---------eEEeCCC---CC---CCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555 109 -FGA---------DVIMTSE---SC---RNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (295)
Q Consensus 109 -~~~---------~v~~~~~---~~---~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v 171 (295)
++. .++...+ .. .|...+++.|+..+.. +.+.+++++||+ +. +.+++++++.+.++. +.+
T Consensus 80 ~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~-~~-~~~l~~l~~~~~~~~-~~~ 156 (420)
T 3brk_X 80 GWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDH-IY-KMDYEYMLQQHVDSG-ADV 156 (420)
T ss_dssp HSCCCCGGGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSC-EE-CBCTHHHHHHHHHTT-CSE
T ss_pred hhccccccccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccE-EE-chHHHHHHHHHHHcC-CeE
Confidence 442 2222111 11 3555678888877742 247899999999 54 457899999887642 223
Q ss_pred EEeeeeCCCCCCCCCCceE-EEECCCCeEEEeecCCCCCCCCCCCCCC--CCceEEEeEEEecHHHHhh-cccCCCCC--
Q 022555 172 STAVTSLKPEDAFDPNRVK-CVVDNHGYAIYFSRGLIPYNKSGKVNPQ--FPYLLHLGIQSYDSNFLKI-YPGLHPTP-- 245 (295)
Q Consensus 172 ~v~~~~~~~~~~~~p~~~~-v~~d~~g~v~~~~~~~i~~~r~~~~~~~--~p~~~~~Giyif~~~~l~~-~~~~~~~~-- 245 (295)
++.+.++.. .++..++ +..+++|++..|.+++.... .++. ..+..++|+|+|++++|.. +....+..
T Consensus 157 tl~~~~~~~---~~~~~~g~v~~d~~g~v~~~~ekp~~~~----~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 229 (420)
T 3brk_X 157 TIGCLEVPR---MEATGFGVMHVNEKDEIIDFIEKPADPP----GIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTS 229 (420)
T ss_dssp EEEEEEEET---TGGGGSEEEEECTTSBEEEEEESCSSCC----CBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC---
T ss_pred EEEEeecCc---cccCcccEEEECCCCcEEEeEeCCCccc----cccccccceEEeeeeEEEeHHHHHHHHHHhcccCCc
Confidence 333333311 1222343 34577899999988853211 0111 1368899999999998754 33322211
Q ss_pred -Ccc-cchhhhhhhhhCCceEEEEEe-----------cCCcCCCCCHHHHHHHHHHHHHh
Q 022555 246 -LQL-EEDLEQLKVLENGYKMKVIKV-----------DHEAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 246 -~~~-~d~~~~~~~~~~G~~v~~v~~-----------~~~~idIdtpeDl~~ae~ll~~r 292 (295)
..+ +|.+. .++..| ++.++.. +++|+|||||+||..|+..+.++
T Consensus 230 ~~~~~~d~l~--~li~~g-~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~ 286 (420)
T 3brk_X 230 SRDFGKDIIP--YIVEHG-KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDV 286 (420)
T ss_dssp -------CTT--HHHHHS-CEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSS
T ss_pred cccchHHHHH--HHhhhC-cEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCC
Confidence 111 22221 234456 8899888 77999999999999999877553
No 36
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=99.91 E-value=2e-23 Score=194.88 Aligned_cols=212 Identities=16% Similarity=0.197 Sum_probs=150.1
Q ss_pred EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc--CCeEEeCCCCCCC
Q 022555 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCRN 122 (295)
Q Consensus 51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~--~~~v~~~~~~~~g 122 (295)
.+||||||.|+||+ ||+|++++|+|||+|+++++.+++ +++|+|+++++ +.+++.+. ++.++..+....+
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~-i~~~~~~~~~~i~~~~~~~~~~g 79 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCG-IRDITVIVSSK-NKEYFEKKLKEISIVTQKDDIKG 79 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGG-GHHHHHHHCTTCEEEECCTTCCB
T ss_pred eEEEEcCcCccccCcccCCCCcceeeECCEeHHHHHHHHHHHCC-CCEEEEEeCHH-HHHHhhccCCcEEEEeCCCCCCC
Confidence 49999999999995 799999999999999999999885 99999999977 66666544 5666654331223
Q ss_pred cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEEE
Q 022555 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIY 201 (295)
Q Consensus 123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~~ 201 (295)
...++..+++ .+.++++.||+|+.++++++++++ ..+..+. ..+.. ++..+ .+..+++|++..
T Consensus 80 ~~~~l~~~~~-----~~~~lv~~~D~~~~~~~~~~~l~~----~~~~~i~--~~~~~-----~~~~~~~v~~~~~g~v~~ 143 (401)
T 2ggo_A 80 TGAAILSAKF-----NDEALIIYGDLFFSNEKEICNIIT----LKENAII--GVKVS-----NPKDYGVLVLDNQNNLSK 143 (401)
T ss_dssp STTTGGGCCC-----SSEEEEEETTEEESCSHHHHHHTT----CSSEEEE--EEECS-----CCSSSCEEEECTTSSEEE
T ss_pred hHHHHHHhcc-----CCCEEEEeCccccccHHHHHHHHH----hcCCEEE--EEEcC-----CCcceeEEEECCCCeEEE
Confidence 3333333322 478999999999998889988876 2233333 23432 22223 344677789988
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC---CCCcccchhhhhhhhhCCceEEEEEecCCcCCCCC
Q 022555 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDA 278 (295)
Q Consensus 202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~---~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdt 278 (295)
|.+++.. ......++|+|+|+++.|..+....+ .+++.++.+. .+ ..|.++..++.+..|+||||
T Consensus 144 ~~ek~~~---------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~-~~g~~v~~~~~~~~~~dI~t 211 (401)
T 2ggo_A 144 IIEKPEI---------PPSNLINAGIYKLNSDIFTYLDKISISERGELELTDAIN--LM-AKDHRVKVIEYEGYWMDIGK 211 (401)
T ss_dssp EECSCSS---------CSCSEEEEEEEEEETHHHHHHHHSCCCSSSCBCHHHHHH--HH-HHHSCEEEEECCSCEEECCS
T ss_pred EEECCCC---------CCCcEEEEEEEEEcHHHHHHhhhcCcCCCCceEHHHHHH--HH-HCCCcEEEEEecceEEcCCC
Confidence 8776421 12468899999999998876543321 2233333332 12 44678999988889999999
Q ss_pred HHHHHHHHHHHHHh
Q 022555 279 PEDVEKIESFMRER 292 (295)
Q Consensus 279 peDl~~ae~ll~~r 292 (295)
|+||+.|+.++.++
T Consensus 212 ~edl~~a~~~l~~~ 225 (401)
T 2ggo_A 212 PWNIIDVNKWALDN 225 (401)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988765
No 37
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=99.91 E-value=2.7e-23 Score=175.02 Aligned_cols=187 Identities=17% Similarity=0.257 Sum_probs=131.5
Q ss_pred CceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcH
Q 022555 48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT 124 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~ 124 (295)
|++.+||||||.|+||+ +|++++++|+|||+|+++++.+++ +++|+|++++ +.+.+++..+++.++.++....|..
T Consensus 4 ~~~~~iIlA~G~~~R~g~~K~l~~~~g~pll~~~l~~l~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLGTPKQLLPYRDTTVLGATLDVARQAG-FDQLILTLGGAASAVRAAMALDGTDVVVVEDVERGCA 82 (197)
T ss_dssp SEEEEEEEECCCCTTTSSCGGGSEETTEEHHHHHHHHHHHTT-CSEEEEEECTTHHHHHHHSCCTTSEEEECC----CCH
T ss_pred CceEEEEECCCCcccCCCCeEcCeeCCccHHHHHHHHHHhcC-CCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHH
Confidence 56889999999999995 899999999999999999999885 8999999875 4555555456788776554444667
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeec
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR 204 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~ 204 (295)
.++..|+..+..+.+.+++++||+||+++++++++++. ..+. . +.+.. . +|..
T Consensus 83 ~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~-~~~~-~-i~~~~-----------------~--~g~~----- 135 (197)
T 2wee_A 83 ASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV-GPAT-E-IMVCR-----------------Y--ADGV----- 135 (197)
T ss_dssp HHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH-GGGS-S-EEEEE-----------------E--TTEE-----
T ss_pred HHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh-cCCC-C-EEEEe-----------------c--CCCc-----
Confidence 88999998873224789999999999999999999987 4322 2 22211 0 1211
Q ss_pred CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhh-CCceEEEEEec-CCcCCCCCHHHH
Q 022555 205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVD-HEAHGVDAPEDV 282 (295)
Q Consensus 205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~-~G~~v~~v~~~-~~~idIdtpeDl 282 (295)
+.| ++|+++.+..+..+. .+. .. ..++. .|.++..++.+ ..|+|||||+||
T Consensus 136 -------------~~P-------~~~~~~~l~~l~~~~-~~~----~~--~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl 188 (197)
T 2wee_A 136 -------------GHP-------FWFSRTVFGELARLH-GDK----GV--WKLVHSGRHPVRELAVDGCVPLDVDTWDDY 188 (197)
T ss_dssp -------------EEE-------EEEEGGGHHHHHTCC-STT----HH--HHHHHCTTSCEEEEECSSCCCCCCSSHHHH
T ss_pred -------------CCC-------EEECHHHHHHHHhCC-CCh----hH--HHHHHhCcccEEEEEcCcccccCCCCHHHH
Confidence 013 578887776544321 111 11 12333 36678888775 589999999999
Q ss_pred HHHHHHH
Q 022555 283 EKIESFM 289 (295)
Q Consensus 283 ~~ae~ll 289 (295)
+.+++++
T Consensus 189 ~~~~~~~ 195 (197)
T 2wee_A 189 RRLLESV 195 (197)
T ss_dssp HHHHTC-
T ss_pred HHHHHHh
Confidence 9987654
No 38
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=99.90 E-value=1.5e-23 Score=184.63 Aligned_cols=213 Identities=14% Similarity=0.123 Sum_probs=143.2
Q ss_pred EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCch-----HHHHHHHHcCC---eEEeCC
Q 022555 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE-----KIAECCQQFGA---DVIMTS 117 (295)
Q Consensus 52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~-----~i~~~~~~~~~---~v~~~~ 117 (295)
+||||||.||||. ||+|+|++|+|||+|+++++.+..++++|+|+++.. .+.+.+++++. .++..+
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELH 81 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEES
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhhhHHHHHHHHHHcCCCCceEEEeC
Confidence 7999999999994 799999999999999999999822589999888742 23333344442 233333
Q ss_pred CCCCCcHHHHHHHHHHcc----ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEE
Q 022555 118 ESCRNGTERCNEALQKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV 193 (295)
Q Consensus 118 ~~~~g~~~~i~~al~~~~----~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~ 193 (295)
+...|...+++.|+..+. ...+.+++++||+ +++...+..+ ....+..+. +.++. +|.+-.+..
T Consensus 82 ~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~-l~~~~~~~~~----~~~~~~~i~--~~~~~-----~p~yG~v~~ 149 (255)
T 4evw_A 82 TETRGQAETVTLGLEELAKQGVDYQGSITVFNIDT-FRPNFVFPDI----SQHSDGYLE--VFQGG-----GDNWSFAKP 149 (255)
T ss_dssp SCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTE-ECTTCCCCGG----GGSSSEEEE--EEECC-----SSCSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCE-EEecchhHHH----hhcCCcEEE--EEecC-----CCceeEEEE
Confidence 344455578899988872 1346799999999 6654444432 233344333 34442 343334456
Q ss_pred CCCC--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHH-Hh----hc-ccCC----CCCCcccchhhhhhhhhCC
Q 022555 194 DNHG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNF-LK----IY-PGLH----PTPLQLEEDLEQLKVLENG 261 (295)
Q Consensus 194 d~~g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~-l~----~~-~~~~----~~~~~~~d~~~~~~~~~~G 261 (295)
|++| +|..|.||.. ....+++|+|+|++.. |. .+ .+.. ..++..+|.+. .++..|
T Consensus 150 d~~g~~~V~~i~EK~~-----------~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~--~li~~g 216 (255)
T 4evw_A 150 EHAGSTKVIQTAEKNP-----------ISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYN--ELIQKG 216 (255)
T ss_dssp SSTTCCBEEEEESSSC-----------SSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHH--HHHHTT
T ss_pred CCCCCeEEEEEEeccC-----------ccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHH--HHHHCC
Confidence 7778 9999888731 2468999999999862 22 11 1111 23444555442 345688
Q ss_pred ceEEEEEec-CCcCCCCCHHHHHHHHHHH
Q 022555 262 YKMKVIKVD-HEAHGVDAPEDVEKIESFM 289 (295)
Q Consensus 262 ~~v~~v~~~-~~~idIdtpeDl~~ae~ll 289 (295)
.+|.++..+ ++|+||+||+||+.+++.-
T Consensus 217 ~~v~~~~~~~~~w~digt~~~l~~~~~~~ 245 (255)
T 4evw_A 217 LNIHYHLIARHEVIFCGVPDEYTDFLRQP 245 (255)
T ss_dssp CCEEEEECCGGGCEECCSHHHHHHHHHC-
T ss_pred CEEEEEEeccccEEECCCHHHHHHHHhcC
Confidence 899999885 8999999999999998653
No 39
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.90 E-value=3.4e-22 Score=192.14 Aligned_cols=232 Identities=18% Similarity=0.224 Sum_probs=163.9
Q ss_pred CCCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHH----HcCC--eEE
Q 022555 46 FRSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQ----QFGA--DVI 114 (295)
Q Consensus 46 ~~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~----~~~~--~v~ 114 (295)
....+.+||||||+||||. ||+|+|++|+|||+|+++.+.++ ++++|+|++++ +.+++++. .++. .++
T Consensus 9 ~~~~~~vvILAaG~GtRm~~~~pK~l~pv~gkp~i~~~l~~~~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 87 (501)
T 3st8_A 9 FPGDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKL-APQRLIVVLGHDHQRIAPLVGELADTLGRTIDVA 87 (501)
T ss_dssp ---CEEEEEEECSCCGGGCCSSCGGGCEETTEEHHHHHHHHHHHH-CCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEE
T ss_pred CCCCceEEEECCcCcccCCCCCCHHHeEECChhHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 3345788999999999995 79999999999999999999998 59999999973 55665553 3444 444
Q ss_pred eCCCCCCCcHHHHHHHHHHcccc-CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceE-EE
Q 022555 115 MTSESCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CV 192 (295)
Q Consensus 115 ~~~~~~~g~~~~i~~al~~~~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~-v~ 192 (295)
.++ +..|...+++.|+..+..+ .+.++++.+|.|+++.+++..+++.+++.. +.+++...++ .+|..|+ ++
T Consensus 88 ~q~-~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~-~~~ti~~~~~-----~dp~~yG~i~ 160 (501)
T 3st8_A 88 LQD-RPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVS-AAVTVLTTTL-----DDPFGYGRIL 160 (501)
T ss_dssp ECS-SCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTT-CSEEEEEEEC-----SCCTTSCEEE
T ss_pred EcC-CCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhcc-ccceEeeecc-----CCchhccccc
Confidence 443 2234446788888888532 468999999999999999999999988653 3344444444 3555554 45
Q ss_pred ECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCC----CCcccchhhhhhhhhCCceEEEE
Q 022555 193 VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPT----PLQLEEDLEQLKVLENGYKMKVI 267 (295)
Q Consensus 193 ~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~----~~~~~d~~~~~~~~~~G~~v~~v 267 (295)
.+++|++..|.|++.. ...+.....+|+|+|+|+++.|..+.. +... ++..++... .+...|..+..+
T Consensus 161 ~~~~g~v~~ivEk~~~-----~~~~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~--~~~~~g~~v~~~ 233 (501)
T 3st8_A 161 RTQDHEVMAIVEQTDA-----TPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIA--ILRSDGQTVHAS 233 (501)
T ss_dssp ECTTCCEEEEECGGGC-----CHHHHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHH--HHHHTTCCEEEE
T ss_pred cccceeEEeeccccCC-----ChhhccceeeeceeeeecchhHHHhhhhhcccccccccchhhHHH--HHHhcCceEEEE
Confidence 7889999998887421 011223468999999999999886443 3222 333343321 123478888888
Q ss_pred EecC--CcCCCCCHHHHHHHHHHHHHh
Q 022555 268 KVDH--EAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 268 ~~~~--~~idIdtpeDl~~ae~ll~~r 292 (295)
..+. ....+++..++..++..+..|
T Consensus 234 ~~~~~~~~~g~n~~~~l~~~~~~~~~r 260 (501)
T 3st8_A 234 HVDDSALVAGVNNRVQLAELASELNRR 260 (501)
T ss_dssp ECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred eccchhhhcccccHHHHHHHHHHhhhh
Confidence 8764 456788888888888777665
No 40
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=99.89 E-value=7.5e-23 Score=173.32 Aligned_cols=184 Identities=16% Similarity=0.141 Sum_probs=119.0
Q ss_pred CceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcH
Q 022555 48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT 124 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~ 124 (295)
|++.+||||||+|+||+ +|+|++++|+|||+|+++++.+. +++|++++ +.+.+++. .++ ++.++....|+.
T Consensus 1 M~~~~iIlAgG~g~Rmg~~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~~~~~~~~~-~~~-~v~~~~~~~G~~ 74 (197)
T 3d5n_A 1 MNIGVIILAAGEGKRFGGDKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYVNEMLPLLM-DQI-VIYNPFWNEGIS 74 (197)
T ss_dssp CCEEEEEECSCCTTCCCSSGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTHHHHGGGCT-TSC-EEECTTGGGCHH
T ss_pred CceEEEEECCcCcccCCCCeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCHHHHHHHhc-CCE-EEECCCCCCCHH
Confidence 56889999999999997 89999999999999999999754 77777775 34433333 466 665554445777
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeec
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR 204 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~ 204 (295)
.++..|++.+. +.+.+++++||+||++++.++++++.+ +. +..+++.+ . +|..
T Consensus 75 ~si~~al~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~-~~~~~~~~-----------------~--~g~~----- 127 (197)
T 3d5n_A 75 TSLKLGLRFFK-DYDAVLVALGDMPFVTKEDVNKIINTF-KP-NCKAVIPT-----------------H--KGER----- 127 (197)
T ss_dssp HHHHHHHHHTT-TSSEEEEEETTCCCSCHHHHHHHHHTC-CT-TCSEEEEE-----------------E--TTEE-----
T ss_pred HHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHh-cC-CCcEEEEE-----------------e--CCcc-----
Confidence 88999999885 247999999999999999999999877 33 22222211 0 1110
Q ss_pred CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhh-CCceEEEEEec--CCcCCCCCHHH
Q 022555 205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVD--HEAHGVDAPED 281 (295)
Q Consensus 205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~-~G~~v~~v~~~--~~~idIdtpeD 281 (295)
+.| ++|+++.+.....+. ... + . ..++. .|.++..++.+ ..++|||||+|
T Consensus 128 -------------~~P-------~~~~~~~l~~l~~l~-g~~---~-~--~~~l~~~~~~v~~v~~~~~~~~~dIdTpeD 180 (197)
T 3d5n_A 128 -------------GNP-------VLISKSLFNEIEKLR-GDV---G-A--RVILNKIKIEELCFIECSEGVLIDIDKKED 180 (197)
T ss_dssp -------------CSC-------EEEEHHHHHHHHHCC-TTC---C-T--HHHHTTSCGGGEEEEECCGGGTCCTTTC--
T ss_pred -------------cCC-------EEECHHHHHHHHccC-CCc---c-H--HHHHHhCccCeEEEEcCCCCcccCCCCHHH
Confidence 125 688888877544321 111 1 1 12222 45667788775 36799999999
Q ss_pred HHHHHHHHHH
Q 022555 282 VEKIESFMRE 291 (295)
Q Consensus 282 l~~ae~ll~~ 291 (295)
|+.+++++..
T Consensus 181 l~~~~~~~~~ 190 (197)
T 3d5n_A 181 LMRLRDFHPL 190 (197)
T ss_dssp ----------
T ss_pred HHHHHHhhcc
Confidence 9999887654
No 41
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=99.89 E-value=1.8e-22 Score=191.34 Aligned_cols=238 Identities=13% Similarity=0.171 Sum_probs=152.0
Q ss_pred CCceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-c--C----
Q 022555 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--G---- 110 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~--~---- 110 (295)
|+++.+||||||.|+||+ ||+|++++|+ |||+|+++++.++ ++++|+|+++. +.+.+++.+ + +
T Consensus 18 ~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~ 96 (451)
T 1yp2_A 18 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGY 96 (451)
T ss_dssp HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCCHHHHHHHHHHCC------
T ss_pred ccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHhhhhhcccccc
Confidence 335789999999999996 7999999999 9999999999988 59999999974 556555533 3 1
Q ss_pred -----CeEEeCCC------CCCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeC
Q 022555 111 -----ADVIMTSE------SCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL 178 (295)
Q Consensus 111 -----~~v~~~~~------~~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~ 178 (295)
+.++...+ ...|...+++.++..+.. ..+.+++++||+ +.+ .+++++++.+.++. +.+++...++
T Consensus 97 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~-~~~-~~l~~l~~~~~~~~-~~~tl~~~~~ 173 (451)
T 1yp2_A 97 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDH-LYR-MDYEKFIQAHRETD-ADITVAALPM 173 (451)
T ss_dssp --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCE-ECC-CCHHHHHHHHHHTT-CSEEEEEEEE
T ss_pred cccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcE-EEc-CCHHHHHHHHHHcC-CcEEEEEEEc
Confidence 22332111 123445678888887742 247899999999 554 57899999887642 3333333333
Q ss_pred CCCCCCCCCce-EEEECCCCeEEEeecCCCCCCCCCC------CC------CCCCceEEEeEEEecHHHHhhc-ccCCCC
Q 022555 179 KPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGK------VN------PQFPYLLHLGIQSYDSNFLKIY-PGLHPT 244 (295)
Q Consensus 179 ~~~~~~~p~~~-~v~~d~~g~v~~~~~~~i~~~r~~~------~~------~~~p~~~~~Giyif~~~~l~~~-~~~~~~ 244 (295)
..+ ++..+ .+..|++|++..|.|++.+...... .. +...+.+++|+|+|++++|..+ ....+.
T Consensus 174 ~~~---~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 250 (451)
T 1yp2_A 174 DEK---RATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPG 250 (451)
T ss_dssp CHH---HHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTT
T ss_pred Chh---hcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhccc
Confidence 211 12233 3346778999999988632000000 00 0124678999999999988543 333222
Q ss_pred CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555 245 PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 292 (295)
Q Consensus 245 ~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r 292 (295)
..++.+.+ ...++..|.++.+++.+++|.||+||+||..|+..+.++
T Consensus 251 ~~~~~~~~-l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~ 297 (451)
T 1yp2_A 251 ANDFGSEV-IPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 297 (451)
T ss_dssp CCCTTTTH-HHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCS
T ss_pred ccchHhhH-HHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcc
Confidence 22232221 113455678999999888999999999999999877654
No 42
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=99.89 E-value=2e-22 Score=184.45 Aligned_cols=230 Identities=13% Similarity=0.135 Sum_probs=147.8
Q ss_pred CceEEEEEcCCCCCCCC-------CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcC-CeEEeCCC
Q 022555 48 SRVVGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG-ADVIMTSE 118 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~-------~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~-~~v~~~~~ 118 (295)
|++.+||||||.|+||. ||+|++++| +|||+|+++++....++++|+|+++++....+.++.+ ..++..+
T Consensus 1 M~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~~~~i~e~- 79 (337)
T 2cu2_A 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADGIRLLLEP- 79 (337)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSSSEEEEES-
T ss_pred CCeEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhccCceEecC-
Confidence 45789999999999992 899999999 9999999999998745899999998764433333333 3333332
Q ss_pred CCCCcH-HHHHHHHHHcc--ccCCEEEEEeCCcccCCHHHHHHHHHHHHh--CCCcEEEEeeeeCCCCCCCCCCceEEEE
Q 022555 119 SCRNGT-ERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVV 193 (295)
Q Consensus 119 ~~~g~~-~~i~~al~~~~--~~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~~v~v~~~~~~~~~~~~p~~~~v~~ 193 (295)
...++ .++..+.. +. ...+.+++++||+|+.+++.++.+++.+.+ ..+..+++.+.+..++ ..++++ ..
T Consensus 80 -~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~--t~yG~I--~~ 153 (337)
T 2cu2_A 80 -LGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPE--TEYGYI--RL 153 (337)
T ss_dssp -SCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCC--SSSCEE--EE
T ss_pred -CCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCC--CCceEE--EE
Confidence 22333 34555544 32 125789999999999999888888776521 1245555544443211 112222 23
Q ss_pred CCC----CeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHH-hhcccCCCCCCc----------ccchhhhh---
Q 022555 194 DNH----GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL-KIYPGLHPTPLQ----------LEEDLEQL--- 255 (295)
Q Consensus 194 d~~----g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l-~~~~~~~~~~~~----------~~d~~~~~--- 255 (295)
+++ +++..|.|||.. .+........ +++|+|+|+|+++.| ..+.+..++.++ ..+.+..+
T Consensus 154 ~~~~~~~~~V~~f~EKp~~-~~a~~~~~~g-~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (337)
T 2cu2_A 154 GPREGAWYRGEGFVEKPSY-AEALEYIRKG-YVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKI 231 (337)
T ss_dssp EEEETTEEEEEEEECCCCH-HHHHHHHHTT-CEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCC
T ss_pred CCcccccCeEEEEEeCCCh-HHHHHHhhcC-CEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccc
Confidence 544 788899888531 1000000011 689999999999887 434332221110 01112111
Q ss_pred ----hhhhCCceEEEEEecCCcCCCCCHHHHHHHH
Q 022555 256 ----KVLENGYKMKVIKVDHEAHGVDAPEDVEKIE 286 (295)
Q Consensus 256 ----~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae 286 (295)
.+++.|.++.+++.+..|.||++++||..+.
T Consensus 232 sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~ 266 (337)
T 2cu2_A 232 SIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (337)
T ss_dssp CHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred hHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence 2466778899999999999999999998874
No 43
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=99.89 E-value=3.6e-22 Score=182.60 Aligned_cols=226 Identities=17% Similarity=0.228 Sum_probs=144.6
Q ss_pred EEEEEcCCCCCCCC-------CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcC-CeEEeCCC
Q 022555 51 VGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFG-ADVIMTSE 118 (295)
Q Consensus 51 ~aiIlAaG~gsRl~-------~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~-~~v~~~~~ 118 (295)
.+||||||.||||+ ||+|++++| +|||+|+++++....++++|+|+++++. +.+.+.+.+ ..++..+.
T Consensus 3 ~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~~ 82 (336)
T 2x65_A 3 KALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPM 82 (336)
T ss_dssp EEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEESS
T ss_pred EEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccceEEeCCC
Confidence 59999999999994 799999999 9999999999998645899999998653 333332221 24555443
Q ss_pred CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHH----HHhCCCcEEEEeeeeCCCCCCCCCCceEE-EE
Q 022555 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA----LQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VV 193 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~----~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~ 193 (295)
..|...++..|...+. +.+.+++++||+|+.+++.++.+++. +.+. +..+++.+.+..++ ..++. ..
T Consensus 83 -~~gta~ai~~a~~~~~-~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~-~~~vt~~i~p~~~~-----~~yG~I~~ 154 (336)
T 2x65_A 83 -KKNTAPACFIGTKLAD-DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKY-DGLFTFGIVPTRPE-----TGYGYIEI 154 (336)
T ss_dssp -CCCHHHHHHHHHTTSC-TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHH-CSEEEEEECCCSCC-----SSSEEEEE
T ss_pred -CCCcHHHHHHHHHhhC-CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhc-CCeEEEEeecccCC-----CCceEEEE
Confidence 2344455666665543 34689999999999998887666654 3332 24444443443211 12322 23
Q ss_pred CCC-----CeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHh-hcccCCCCCC-----------cc-cchhhhh
Q 022555 194 DNH-----GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK-IYPGLHPTPL-----------QL-EEDLEQL 255 (295)
Q Consensus 194 d~~-----g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~-~~~~~~~~~~-----------~~-~d~~~~~ 255 (295)
+++ +++..|.|||.. .+.........+++|+|+|+|+++.|. .+.+..++.+ ++ .+.+..+
T Consensus 155 ~~~~~~~~~~V~~f~EKp~~-~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~ 233 (336)
T 2x65_A 155 GEELEEGVHKVAQFREKPDL-ETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKV 233 (336)
T ss_dssp EEEEETTEEEEEEEEESCCH-HHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHS
T ss_pred CCccCCCccEEEEEEECCCh-HHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhC
Confidence 443 688899998632 100000001136899999999998873 3322221110 10 1111111
Q ss_pred -------hhhhCCceEEEEEecCCcCCCCCHHHHHHH
Q 022555 256 -------KVLENGYKMKVIKVDHEAHGVDAPEDVEKI 285 (295)
Q Consensus 256 -------~~~~~G~~v~~v~~~~~~idIdtpeDl~~a 285 (295)
.+++.+.++.+++.+..|.||++++||..+
T Consensus 234 ~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 234 PSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp CCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred ccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 245667889999999999999999999887
No 44
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=99.88 E-value=7.1e-23 Score=177.46 Aligned_cols=214 Identities=17% Similarity=0.182 Sum_probs=125.0
Q ss_pred CCCCCCCceEEEEEcCCCCCCC-C-CccccccCCcchHHHHHHHHhhCCCCCeEEEECC-chHHHHH-HHHcC--CeEEe
Q 022555 42 RSKNFRSRVVGIIPARFASSRF-E-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD-DEKIAEC-CQQFG--ADVIM 115 (295)
Q Consensus 42 ~~~~~~~~i~aiIlAaG~gsRl-~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~-~~~i~~~-~~~~~--~~v~~ 115 (295)
..++.|+++.+||||||.|+|| + ||+|++++|+|||+|+++++.++ +++|+|++. .+++.+. .++++ +.++.
T Consensus 11 ~~~~~m~~~~~iIlA~G~g~R~~~~~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~~~~~~~~~~~~~~~~~~~~~v~ 88 (232)
T 2xme_A 11 IFAGRIKLMKAVILAAGLGTRLGGVPKPLVRVGGCEIILRTMKLLSPH--VSEFIIVASRYADDIDAFLKDKGFNYKIVR 88 (232)
T ss_dssp -----CCCEEEEEEECC------CCCGGGCEETTEEHHHHHHHHHGGG--EEEEEEEESTTHHHHHHHHTTSCCCEEEEE
T ss_pred hhhcccccceEEEECCcCcCcCCCCCcEEeEECCEEHHHHHHHHHHHh--CCEEEEEeCChHHHHHHHHHhcCCcEEEEE
Confidence 3344477789999999999999 4 79999999999999999999876 789999883 3455444 34444 34444
Q ss_pred CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECC
Q 022555 116 TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN 195 (295)
Q Consensus 116 ~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~ 195 (295)
++....|...++..|+..+. +.+++++||+|+ +++.++++++. .+ ..+. ......+. .+..++..+
T Consensus 89 ~~~~~~g~~~~i~~a~~~~~---~~~lv~~~D~p~-~~~~~~~l~~~----~~--~~~~-~~~~~~~~--~~~~~v~~~- 154 (232)
T 2xme_A 89 HDRPEKGNGYSLLVAKNHVE---DRFILTMGDHVY-SQQFIEKAVRG----EG--VIAD-REPRFVDI--GEATKIRVE- 154 (232)
T ss_dssp CSCGGGCHHHHHHTTGGGCC---SSEEEEETTEEE-CHHHHHHHTTC----CE--EEEE-SSCSSSCT--TTSCEEEEE-
T ss_pred CCCCCCCcHHHHHHHHHHCC---CCEEEEcCCccc-CHHHHHHHHhC----CC--cEEE-ccccccCC--CcceEEEEc-
Confidence 43333455678888888773 458899999997 88888877652 12 1221 11000011 123344444
Q ss_pred CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC-CCCcccchhhhhhhhhCCceEEEEEec-CCc
Q 022555 196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP-TPLQLEEDLEQLKVLENGYKMKVIKVD-HEA 273 (295)
Q Consensus 196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~-~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~ 273 (295)
+|++..+.+++. + ....+.|+|+|+++.+..+..... .+.... .++..+ ++..+..+ ..|
T Consensus 155 ~g~v~~~~~~~~---~--------~~~~~~g~~~~~~~~~~~l~~~~~~g~~~l~------~ll~~~-~v~~~~~~~~~~ 216 (232)
T 2xme_A 155 DGRVAKIGKDLR---E--------FDCVDTGFFVLDDSIFEHAEKLRDREEIPLS------EIVKLA-RLPVTYVDGELW 216 (232)
T ss_dssp TTEEEEEETTCS---S--------CSEEEEEEEEECTTHHHHHGGGTTSSCCCHH------HHHHHH-TCBEEECCSCCE
T ss_pred CCEEEEeecCCC---C--------cceEEEEEEEECHHHHHHHHHHHhcChhHHH------HHHHcC-CEEEEEECCCCE
Confidence 788888776531 1 245789999999998876544321 111111 223332 35555554 689
Q ss_pred CCCCCHHHHHHHHHHH
Q 022555 274 HGVDAPEDVEKIESFM 289 (295)
Q Consensus 274 idIdtpeDl~~ae~ll 289 (295)
+|||||+||+.|++++
T Consensus 217 ~dI~tpeDl~~a~~~l 232 (232)
T 2xme_A 217 MDVDTKEDVRRANRAL 232 (232)
T ss_dssp EEEECC----------
T ss_pred EeCCCHHHHHHHHhhC
Confidence 9999999999988764
No 45
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=99.88 E-value=1.7e-21 Score=166.44 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=89.4
Q ss_pred EEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCch-HHHHHHHHcCCeEEeCCCCCCCcHHHHH
Q 022555 51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE-KIAECCQQFGADVIMTSESCRNGTERCN 128 (295)
Q Consensus 51 ~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~-~i~~~~~~~~~~v~~~~~~~~g~~~~i~ 128 (295)
.+||||||+|+||+ +|+|++++|+|||+|+++++.+. +|+|+++++ .+..+.+.+++.++.++....|+..++.
T Consensus 2 ~aiILAgG~s~Rmg~~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~~~~~~~~~~~~~~~~v~d~~~~~G~~~si~ 77 (208)
T 3ngw_A 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIH 77 (208)
T ss_dssp EEEEECCCCCTTTTSCGGGCEETTEEHHHHHHHHHTTS----EEEEECSSHHHHHHHHTTSCSCEECCTTCCCSHHHHHH
T ss_pred EEEEECCCchhhCCCCCcccEECCeeHHHHHHHHhcCC----CEEEEECCHHHHHHHHHhcCCeEEecCCCCCChHHHHH
Confidence 59999999999997 89999999999999999999854 899999853 4444444478887765444446678899
Q ss_pred HHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 129 ~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
.|+..+ .+++ +++||+||++++.++++++.+.+
T Consensus 78 ~gl~~~---~~~v-v~~~D~P~i~~~~i~~l~~~~~~ 110 (208)
T 3ngw_A 78 AALRHF---GSCV-VAAIDMPFVKPEVLEHLYKEGEK 110 (208)
T ss_dssp HHHHHH---SSEE-EEETTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHc---CCCE-EEECCccCCCHHHHHHHHHHhhc
Confidence 999887 4788 99999999999999999998874
No 46
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=99.88 E-value=1.2e-22 Score=187.66 Aligned_cols=199 Identities=16% Similarity=0.204 Sum_probs=136.4
Q ss_pred CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc-hHHHHHHHHcCCeEEeCCCCCCC
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD-EKIAECCQQFGADVIMTSESCRN 122 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~-~~i~~~~~~~~~~v~~~~~~~~g 122 (295)
||++.+||||||+|+||+ +|+|++++|+|||+|+++++.+++.+++|+|++++ +.+.++++ ++.++. ...+
T Consensus 1 Mmki~aIILAaG~ssRmg~~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~~~~~i~~~~~--~v~~v~---~g~g 75 (371)
T 1w55_A 1 MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTK--NYEFIE---GGDT 75 (371)
T ss_dssp -CCEEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCHHHHHTTCS--SSEEEE---CCSS
T ss_pred CCccEEEEECCCCCccCCCCCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcCCHHHHHHHhC--CCEEEe---CCCC
Confidence 578899999999999997 79999999999999999999986679999999983 22222221 255442 1234
Q ss_pred cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202 (295)
Q Consensus 123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~ 202 (295)
...++..|+..+. .+.+++++||+||+++++++++++.+.+. ++.+.+ .++. +.++.. .
T Consensus 76 ~~~sv~~aL~~l~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~a~i~~--~~~~-------d~vk~v---~------ 134 (371)
T 1w55_A 76 RAESLKKALELID--SEFVMVSDVARVLVSKNLFDRLIENLDKA-DCITPA--LKVA-------DTTLFD---N------ 134 (371)
T ss_dssp HHHHHHHHHTTCC--SSEEEEEETTCTTCCHHHHHHHHTTGGGC-SEEEEE--ECCC-------SCEEET---T------
T ss_pred hHHHHHHHHHhcC--CCeEEEEeCCcccCCHHHHHHHHHHHHhc-CCEEEE--EEee-------cCeeee---e------
Confidence 5578899998874 58999999999999999999999987654 443322 2321 122211 0
Q ss_pred ecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCCCHHH
Q 022555 203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAPED 281 (295)
Q Consensus 203 ~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idIdtpeD 281 (295)
+. .+|+..+..++| ++|+.+.+........ . .++.. .++ ..|.++..++.+..++|||||+|
T Consensus 135 -~t---~~r~~l~~~~~P-------~~f~~~~l~~~~~~~~--~-~td~~---~ll~~~g~~V~~v~~~~~~~dIdTpeD 197 (371)
T 1w55_A 135 -EA---LQREKIKLIQTP-------QISKTKLLKKALDQNL--E-FTDDS---TAIAAMGGKIWFVEGEENARKLTFKED 197 (371)
T ss_dssp -EE---ECGGGCCEECSC-------EEEEHHHHHHHTSSCC--C-CSSHH---HHHHTTTCCEEEEECCGGGCCCCSGGG
T ss_pred -ee---cCccceeecCCc-------ceecHHHHHHHHHhcc--c-ccCHH---HHHHhCCCcEEEEECCccccCCCCHHH
Confidence 00 022222233456 8899887765433211 1 22221 222 25788998887778999999999
Q ss_pred HHHHHHHH
Q 022555 282 VEKIESFM 289 (295)
Q Consensus 282 l~~ae~ll 289 (295)
|+.|+ ++
T Consensus 198 L~~Ae-ll 204 (371)
T 1w55_A 198 LKKLD-LP 204 (371)
T ss_dssp GGGSC-CC
T ss_pred HHHHH-Hh
Confidence 99988 65
No 47
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=99.88 E-value=2.7e-22 Score=170.37 Aligned_cols=187 Identities=20% Similarity=0.204 Sum_probs=121.2
Q ss_pred eCCCCCCCC-ceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc-CCeEEeC
Q 022555 40 LGRSKNFRS-RVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMT 116 (295)
Q Consensus 40 ~~~~~~~~~-~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~-~~~v~~~ 116 (295)
|.++.+.+| ++.+||||||+|+||+ +|+|++++|+|||+|+++++.+. +++|+|+++++.. +.+ +++++.+
T Consensus 4 ~~~~~~~~~~~~~~iILA~G~g~Rmg~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~----~~~~~~~~v~~ 77 (201)
T 2e8b_A 4 FTWRKGSLSKVNTCYVLAGGKSKRFGEDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK----FSFLNAPVVLD 77 (201)
T ss_dssp CCSSTTTSCSCCEEEEEEESSCCCCSTTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG----GGGGTCCEEEC
T ss_pred cccccCCcccCceEEEECCCCCccCCCCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH----hhcCCceEEec
Confidence 445566554 5789999999999998 99999999999999999999875 8899999986543 223 6777765
Q ss_pred CCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHH-HHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECC
Q 022555 117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG-VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN 195 (295)
Q Consensus 117 ~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~-li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~ 195 (295)
+....|...++..|+..+. .+.+++++||+||++++.++. ++ + .+.++. ..
T Consensus 78 ~~~~~g~~~~i~~al~~~~--~~~~lv~~~D~P~i~~~~i~~~l~----~-~~~~v~--------------------~~- 129 (201)
T 2e8b_A 78 EFEESASIIGLYTALKHAK--EENVFVLSGDLPLMKKETVLYVLE----N-FKEPVS--------------------VA- 129 (201)
T ss_dssp CCSSCCHHHHHHHHHHHCS--SSEEEEEETTCTTCCHHHHHHHHH----T-CCSSEE--------------------EE-
T ss_pred CCCCCCcHHHHHHHHHHcC--CCCEEEEeCCcCcCCHHHHHHHHh----c-CCEEEE--------------------ec-
Confidence 5445577788999998874 578999999999999999998 87 2 232211 00
Q ss_pred CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC-CCCCCcccchhhhhhhhhCCceEEEEEec--CC
Q 022555 196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL-HPTPLQLEEDLEQLKVLENGYKMKVIKVD--HE 272 (295)
Q Consensus 196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~-~~~~~~~~d~~~~~~~~~~G~~v~~v~~~--~~ 272 (295)
+|+ .....|+| |+++.+..+... ...+....+ ++.. .++..+..+ ..
T Consensus 130 ~g~----------------------~~p~~giy-~~~~~~~~l~~~~~~g~~~~~~------~l~~-~~~~~~~~~~~~~ 179 (201)
T 2e8b_A 130 KTE----------------------KLHTLVGV-YSKKLLEKIEERIKKGDYRIWA------LLKD-VGYNEVEIPEELR 179 (201)
T ss_dssp ESS----------------------SEEEEEEE-EEGGGHHHHHHHHHTTCCCHHH------HHHH-HCCEEEECCGGGG
T ss_pred CCc----------------------eeeEEEEE-eChhHHHHHHHHHHcCCchHHH------HHHH-CCeEEeccccccc
Confidence 111 12456788 888876644321 111222222 1211 235555553 46
Q ss_pred cC--CCCCHHHHHHHHHHHH
Q 022555 273 AH--GVDAPEDVEKIESFMR 290 (295)
Q Consensus 273 ~i--dIdtpeDl~~ae~ll~ 290 (295)
++ |||||+||+.+++.++
T Consensus 180 ~~~~dintpedl~~~~~~~~ 199 (201)
T 2e8b_A 180 YTLLNMNTKEDLKRILAIEN 199 (201)
T ss_dssp GGGCCSCCC-----------
T ss_pred hhhcCCCCHHHHHHHHHHhh
Confidence 88 9999999999988764
No 48
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=1.2e-21 Score=165.25 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=81.1
Q ss_pred EEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH-c----CCeEEeCCCCCC
Q 022555 51 VGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-F----GADVIMTSESCR 121 (295)
Q Consensus 51 ~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~-~----~~~v~~~~~~~~ 121 (295)
.+||||||+|+||+ +|+|++++|+|||+|+++++.+++ +++|+|+++ .+.+.+++.. + ++.++.. ...
T Consensus 2 ~aiIlA~G~s~R~~~~~K~l~~~~g~pli~~~l~~l~~~~-~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~ 78 (196)
T 3rsb_A 2 DALIMAGGKGTRMGGVEKPLIKLCGRCLIDYVVSPLLKSK-VNNIFIATSPNTPKTKEYINSAYKDYKNIVVIDT--SGK 78 (196)
T ss_dssp EEEEEC----CGGGGSCGGGCEETTEEHHHHHHHHHHSSS-CCCEEEECCTTCHHHHHHHHHHTTTTTEEEE--------
T ss_pred EEEEECCCCCCcCCCCCccEEEECCEEHHHHHHHHHHHCC-CCEEEEEeCCChHHHHHHHHhhccCCCCEEEEEC--CCC
Confidence 59999999999997 599999999999999999999886 999999996 4566666654 3 2333322 222
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
|...++..|+..+ .+.+++++||+||+++++++++++.+.+
T Consensus 79 g~~~si~~al~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 119 (196)
T 3rsb_A 79 GYIEDLNECIGYF---SEPFLVVSSDLINLKSKIINSIVDYFYC 119 (196)
T ss_dssp --CCCCCTTTTTC---SSCEEEEETTEESCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhC---CCCEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 3334567777766 4789999999999999999999999875
No 49
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=99.86 E-value=2.1e-21 Score=165.01 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=91.8
Q ss_pred CCCCceEEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCC-C
Q 022555 45 NFRSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESC-R 121 (295)
Q Consensus 45 ~~~~~i~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~-~ 121 (295)
..||++.+||||||+|+||+ +|+|++++|+|||+|+++++.. .+++|+|+++.+. ..+ .+.++.++.++... .
T Consensus 2 ~~mm~~~~iILAgG~s~Rmg~~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~-~~~-~~~~~~~v~~~~~~~~ 77 (201)
T 1e5k_A 2 NLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQ-EIY-QASGLKVIEDSLADYP 77 (201)
T ss_dssp --CCSEEEEEECCCCCSSSCSSCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSH-HHH-HTTSCCEECCCTTCCC
T ss_pred CCCCcceEEEEcCCCCCcCCCCCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcH-HHH-hhcCCeEEecCCCCCC
Confidence 44788999999999999996 8999999999999999999984 4899999998654 233 34677776554332 4
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHH
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 162 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~ 162 (295)
|...++..|+..+. .+.+++++||+||+++++++.+++.
T Consensus 78 G~~~si~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 78 GPLAGMLSVMQQEA--GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp SHHHHHHHHHHHCC--SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred CHHHHHHHHHHhCC--CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 66778999999884 5899999999999999999999986
No 50
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=99.85 E-value=3.7e-21 Score=166.91 Aligned_cols=197 Identities=19% Similarity=0.185 Sum_probs=130.1
Q ss_pred CceEEEEEcCCC---CCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCC
Q 022555 48 SRVVGIIPARFA---SSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN 122 (295)
Q Consensus 48 ~~i~aiIlAaG~---gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g 122 (295)
|++.+||||||. |+||+ ||+|++++|+|||+|+++++.+.+ + +|+|+++.+.+.+++ ++.+ ....|
T Consensus 1 m~~~~vIlAaG~tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~-~-~ivvv~~~~~i~~~~---~~~~----~~~~g 71 (232)
T 2dpw_A 1 MRPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAG-L-SPVYVGENPGLVPAP---ALTL----PDRGG 71 (232)
T ss_dssp CCCEEEEECCCBCSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTT-C-EEEEESCCSSCSSCC---SEEE----CCCSS
T ss_pred CceeEEEECCCCCccccccCCCCceeeEECCEEHHHHHHHHHHhcC-C-EEEEEeChHHHhhhc---CeEe----cCCCC
Confidence 467899999999 99986 799999999999999999999885 5 888887754332221 4443 23446
Q ss_pred cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202 (295)
Q Consensus 123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~ 202 (295)
...++..|+..+. +.+++++||+||+++++++++++ +..+.+ +++.+.+....+...|. . .+++..+
T Consensus 72 ~~~~i~~a~~~~~---~~~lv~~~D~P~~~~~~i~~l~~-~~~~~~--~~~~~~~~~~~~~~~~~-~------~~~v~~~ 138 (232)
T 2dpw_A 72 LLENLEQALEHVE---GRVLVATGDIPHLTEEAVRFVLD-KAPEAA--LVYPIVPKEAVEARFPR-T------KRTYARL 138 (232)
T ss_dssp HHHHHHHHHHTCC---SEEEEEETTCTTCCHHHHHHHHH-HCCSCS--EEEEEEEHHHHHHHCTT-C------CCCCEEE
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHh-cCCCCC--EEEEEeeccchhhhCCC-c------ceeEEEE
Confidence 6678999998873 78999999999999999999999 532223 33332321000000111 0 1234433
Q ss_pred ecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC------CC--------------------CCCcccchhhhhh
Q 022555 203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL------HP--------------------TPLQLEEDLEQLK 256 (295)
Q Consensus 203 ~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~------~~--------------------~~~~~~d~~~~~~ 256 (295)
.++ ...++|+|+|+++.+..+... .. .++..++.+. .
T Consensus 139 ~ek---------------~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~--~ 201 (232)
T 2dpw_A 139 REG---------------TFTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEA--R 201 (232)
T ss_dssp TTE---------------EEEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHH--H
T ss_pred ecC---------------ceeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHHHHHhccCCHHHHHH--H
Confidence 332 137899999999987644220 00 1222233221 1
Q ss_pred hh-hCCceEEEEEec--CCcCCCCCHHHHH
Q 022555 257 VL-ENGYKMKVIKVD--HEAHGVDAPEDVE 283 (295)
Q Consensus 257 ~~-~~G~~v~~v~~~--~~~idIdtpeDl~ 283 (295)
+. ..|.++..+..+ +.|+|||||+||+
T Consensus 202 ~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 202 AQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp HHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred HHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 22 257889999884 4799999999985
No 51
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=99.38 E-value=6.4e-12 Score=119.46 Aligned_cols=184 Identities=11% Similarity=0.106 Sum_probs=108.1
Q ss_pred CCceEEEEEcCCCCCCCC---CccccccC-CcchHHHHHHHHhhCC---CCC-eEEEECC---chHHHHHHHHc---CCe
Q 022555 47 RSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT---TLD-HLVVATD---DEKIAECCQQF---GAD 112 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~-gkpLl~~~l~~l~~~~---~i~-~IvVv~~---~~~i~~~~~~~---~~~ 112 (295)
..++.+||||||.||||+ ||.++++. |+|||+|+++++++.. ++. .++|+++ ++.+.++++++ +.+
T Consensus 90 ~~k~avViLAGG~GTRmgs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~~ 169 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIR 169 (488)
T ss_dssp GGGEEEEEECCCBSGGGTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSSSCE
T ss_pred cCCceEEEEcCCCcccCCCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccccCce
Confidence 467889999999999997 89999998 9999999999987652 122 3556554 46677777653 344
Q ss_pred EE-e-CC----------------------CCCCCcHHHHHHH------HHHcc-ccCCEEEEEeCCcccCCHHHHHHHHH
Q 022555 113 VI-M-TS----------------------ESCRNGTERCNEA------LQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVK 161 (295)
Q Consensus 113 v~-~-~~----------------------~~~~g~~~~i~~a------l~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~ 161 (295)
+. + +. ...+.|+..++.+ +..+. ...++++++++|. ++...++. ++.
T Consensus 170 i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~-~L~ 247 (488)
T 2i5k_A 170 IRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLK-ILN 247 (488)
T ss_dssp EEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHH-HHH
T ss_pred EEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHH-HHH
Confidence 42 2 11 0134454443333 34342 2357999999999 88766775 446
Q ss_pred HHHhCCCcEEEEeeeeCCCCCCCCCCc-eEEEECCCCeEEEeecCCCC-CCCCCCCCCCCCceEEEeEEEecHHHHhhc
Q 022555 162 ALQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIP-YNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 238 (295)
Q Consensus 162 ~~~~~~d~~v~v~~~~~~~~~~~~p~~-~~v~~d~~g~v~~~~~~~i~-~~r~~~~~~~~p~~~~~Giyif~~~~l~~~ 238 (295)
.+.++ ++.+++.+++.+ +|.. ++++...+|++.-...+..+ ..++.......-..+|+|+|+|+.++|...
T Consensus 248 ~~~~~-~a~~t~~v~~~~-----~p~~~yG~Iv~~dG~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~ 320 (488)
T 2i5k_A 248 HMIET-GAEYIMELTDKT-----RADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRL 320 (488)
T ss_dssp HHHHS-CCSEEEEEEECC-----GGGSSSCEEEEETTEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHH
T ss_pred HHHhc-CCcEEEEEEEec-----CCCCceeEEEEECCcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHH
Confidence 55443 233444444432 2322 43333336663322222221 011000001113478999999999988753
No 52
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=99.33 E-value=7e-12 Score=118.56 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=126.8
Q ss_pred CceEEEEEcCCCCCCCC---CccccccC-CcchHHHHHHHHhhCC---C--CCeEEEECC--chHHHHHHHH---cCCeE
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT---T--LDHLVVATD--DEKIAECCQQ---FGADV 113 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~-gkpLl~~~l~~l~~~~---~--i~~IvVv~~--~~~i~~~~~~---~~~~v 113 (295)
.++.+||||||.||||+ ||+++++. |+|+|++.++++++.+ + +..++..+. ++.+.+++++ +|+++
T Consensus 78 ~k~~vviLAGGlGTRLg~~~PK~llpv~~gkp~Le~~i~~l~~~~~~~G~~ip~vimts~~t~e~t~~~f~~~~~fG~~I 157 (469)
T 2icy_A 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDI 157 (469)
T ss_dssp TTEEEEEEECCBSGGGTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTSSSCE
T ss_pred ccceEEEEcCCccccCCCCCCccccccCCCCCHHHHHHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHhcccCCceE
Confidence 57889999999999997 89999998 9999999999988652 2 444444444 4677777754 46655
Q ss_pred E-e-C----------------------CCCCCCcHHHHHHHH------HHcc-ccCCEEEEEeCCcccCCHHHHHHHHHH
Q 022555 114 I-M-T----------------------SESCRNGTERCNEAL------QKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKA 162 (295)
Q Consensus 114 ~-~-~----------------------~~~~~g~~~~i~~al------~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~ 162 (295)
. + + .+..+.|+.+++.++ +.+. ...++++++++|. +....+. .++..
T Consensus 158 ~~f~Q~~~P~i~~e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~Dn-L~~~~d~-~ll~~ 235 (469)
T 2icy_A 158 HTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDL-TILKH 235 (469)
T ss_dssp EEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTB-TTCCCCH-HHHHH
T ss_pred EEEEecceeeEccccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCc-CCcccCH-HHHHH
Confidence 3 1 1 112344554444443 2322 2357999999998 4322222 45555
Q ss_pred HHh-CCCcEEEEeeeeCCCCCCCCCC-ceEEEECCCCe--EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc
Q 022555 163 LQA-APDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGY--AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 238 (295)
Q Consensus 163 ~~~-~~d~~v~v~~~~~~~~~~~~p~-~~~v~~d~~g~--v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~ 238 (295)
+.+ +.+..+. +++.+ +|+ .++++...+|+ ++.+.+.+.. ..+.......-..+|+|+|+|+.++|...
T Consensus 236 ~~~~~a~~t~~--v~~k~-----~~~~~~Gvl~~~dg~~~vvE~~e~p~~-~~~e~k~~~~~~~~N~g~y~~~~~~L~~i 307 (469)
T 2icy_A 236 LIQNKNEYCME--VTPKT-----LADVKGGTLISYEGKVQLLEIAQVPDE-HVNEFKSIEKFKIFNTNNLWVNLKAIKKL 307 (469)
T ss_dssp HHHHTCSEEEE--EEECC-----TTCCSSCEEEEETTEEEEECGGGSCGG-GHHHHHSSSSCCEEEEEEEEEEHHHHHHH
T ss_pred HHHcCCCeeEE--EEEec-----cCCCceeEEEEECCEEEEEEEeccChh-hhhhhccccccceeeEEEEEEcHHHHHHH
Confidence 543 3344433 34432 221 24444333565 4444444311 00000001122467999999999998764
Q ss_pred ccCC----CC-----------CCcccchhhhhhhhh-CCceEEEEEec-CCcCCCCCHHHHHHHHH
Q 022555 239 PGLH----PT-----------PLQLEEDLEQLKVLE-NGYKMKVIKVD-HEAHGVDAPEDVEKIES 287 (295)
Q Consensus 239 ~~~~----~~-----------~~~~~d~~~~~~~~~-~G~~v~~v~~~-~~~idIdtpeDl~~ae~ 287 (295)
.+-. +. .+.+..... .++. .+. ..+++.+ .+|..|.++.||..+.+
T Consensus 308 ~~~~~~~lp~~v~~K~id~~~~~klE~~~~--D~~~~~~~-~~~~~V~R~~F~PvKn~~dll~~~s 370 (469)
T 2icy_A 308 VEADALKMEIIPNPKEVDGVKVLQLETAAG--AAIRFFDN-AIGVNVPRSRFLPVKASSDLLLVQS 370 (469)
T ss_dssp HHTTCCCCCCBCCEEEETTEEEECCBCCGG--GGGGGSTT-CEEEECCGGGCCBCCSHHHHHHHHS
T ss_pred HhcccCCchhhccceecCCCceEeehHhhH--HHHHhcCC-eEEEEechhHcCcCCCHHHHHHHHH
Confidence 3211 00 011111111 1111 222 3344443 58999999999987764
No 53
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=99.29 E-value=1.7e-11 Score=104.28 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=78.3
Q ss_pred eEEEEEc--CCCCCCCCC---ccccccCCcchHHHHHHHHhhCCCCCeE-EEECCchHHHHHHHHcCCeEEeCCCCCCCc
Q 022555 50 VVGIIPA--RFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHL-VVATDDEKIAECCQQFGADVIMTSESCRNG 123 (295)
Q Consensus 50 i~aiIlA--aG~gsRl~~---K~l~~i~gkpLl~~~l~~l~~~~~i~~I-vVv~~~~~i~~~~~~~~~~v~~~~~~~~g~ 123 (295)
+.+||++ |...|||++ +......++||++|+++++++.+ ++.+ +|+++++....+ .++.++.++ .|.
T Consensus 4 ~~~vip~k~g~~KtRL~~~l~~~~~~~l~~~ll~~vl~~l~~~~-~~~v~vvv~~~~~~~~~---~~~~~v~~~---~gl 76 (211)
T 2i5e_A 4 MRAVIPYKKAGAKSRLSPVLSLQEREEFVELMLNQVISSLKGAG-IEQVDILSPSVYGLEEM---TEARVLLDE---KDL 76 (211)
T ss_dssp CEEEEECCCTTTTGGGTTTSCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEESSCTTCSSC---CSSEEEECC---SCH
T ss_pred eEEEEEeCCCCCccccCccCCHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEEcCcHHHHhh---cCCEEEECC---CCH
Confidence 4699999 778889863 22233567999999999999874 8899 899876543222 467776654 455
Q ss_pred HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHH
Q 022555 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 161 (295)
Q Consensus 124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~ 161 (295)
.+++..+++.. .+.++++.||+|++++++++++++
T Consensus 77 ~~sl~~a~~~~---~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 77 NEALNRYLKEA---EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp HHHHHHHHHHC---CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred HHHHHHHHHhc---CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 56788888776 468999999999999999999987
No 54
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=99.23 E-value=3.3e-10 Score=108.11 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=106.1
Q ss_pred CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhh--------CC---CCCeEEEECC--chHHHHHHHH
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKL--------AT---TLDHLVVATD--DEKIAECCQQ 108 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~--------~~---~i~~IvVv~~--~~~i~~~~~~ 108 (295)
.++.+||||||.||||+ ||+++++ .|+|+|++.++++.+ .+ .+..+++.+. ++.+.+++++
T Consensus 101 ~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~~ 180 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTK 180 (505)
T ss_dssp TCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHH
T ss_pred CceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHHh
Confidence 56889999999999998 8999999 799999999999765 12 2555555555 4567777654
Q ss_pred ---cCCe---E--EeCC-------------------CCCCCcHHHHHHHHH------Hcc-ccCCEEEEEeCCcccCCHH
Q 022555 109 ---FGAD---V--IMTS-------------------ESCRNGTERCNEALQ------KLE-KKYDIVVNIQGDEPLIEPE 154 (295)
Q Consensus 109 ---~~~~---v--~~~~-------------------~~~~g~~~~i~~al~------~~~-~~~d~vlv~~~D~Pli~~~ 154 (295)
+|+. + +.+. +..+.|+.+++.++. .+. ...++++++++|+++....
T Consensus 181 ~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~ 260 (505)
T 1jv1_A 181 HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVA 260 (505)
T ss_dssp TGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTT
T ss_pred hhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccccc
Confidence 3442 3 2210 112344444555443 221 1248999999999866321
Q ss_pred HHHHHHHHHHhCCCcEEEEeeee-CCCCCCCCCCceEEEECCCCeE--EEeecCCCCCCCCCCC--CCCCCceEEEeEEE
Q 022555 155 IIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYA--IYFSRGLIPYNKSGKV--NPQFPYLLHLGIQS 229 (295)
Q Consensus 155 ~i~~li~~~~~~~d~~v~v~~~~-~~~~~~~~p~~~~v~~d~~g~v--~~~~~~~i~~~r~~~~--~~~~p~~~~~Giyi 229 (295)
...++..+.++ ++.+++.+++ +. .+..++++...+|++ +.+.+.+.. .++... ....-...|+|+|+
T Consensus 261 -d~~~lg~~~~~-~~~~~~~v~~k~~-----~~e~~Gvl~~~dg~~~vvEy~E~p~~-~~~~~~~~g~~~~~~~N~~~~~ 332 (505)
T 1jv1_A 261 -DPRFIGFCIQK-GADCGAKVVEKTN-----PTEPVGVVCRVDGVYQVVEYSEISLA-TAQKRSSDGRLLFNAGNIANHF 332 (505)
T ss_dssp -CHHHHHHHHHT-TCSEEEEEEECCS-----TTCSCCEEEEETTEEEEECGGGSCHH-HHHCBCTTSSBSSCEEEEEEEE
T ss_pred -hHHHHHHHHHc-CCCEEEEEEEccC-----CccCcceEEEECCeEEEEEEeeCCHH-HhhhcccccccccceeeEEEEE
Confidence 22455555543 2333443343 21 223444443335654 444444311 110000 01112578999999
Q ss_pred ecHHHHhhc
Q 022555 230 YDSNFLKIY 238 (295)
Q Consensus 230 f~~~~l~~~ 238 (295)
|+.++|...
T Consensus 333 f~l~~L~~i 341 (505)
T 1jv1_A 333 FTVPFLRDV 341 (505)
T ss_dssp EEHHHHHHH
T ss_pred ecHHHHHHH
Confidence 999988753
No 55
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=98.94 E-value=2.7e-08 Score=91.95 Aligned_cols=181 Identities=17% Similarity=0.185 Sum_probs=104.2
Q ss_pred CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhh------------CCCCCeEEEECC--chHHHHHHH
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKL------------ATTLDHLVVATD--DEKIAECCQ 107 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~------------~~~i~~IvVv~~--~~~i~~~~~ 107 (295)
.++.+|+||||.||||+ ||.+.++ .|+|++++.++.+++ ...+..++..+. ++.+.++++
T Consensus 34 gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~~f~ 113 (405)
T 3oc9_A 34 GKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFK 113 (405)
T ss_dssp TCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHHHHH
T ss_pred CceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHHHHHH
Confidence 46889999999999997 8999999 899999999998853 123554444444 467777776
Q ss_pred H---cCCe---EE--eC-------------------CCCCCCcHHHHHHHHHH------cc-ccCCEEEEEeCCcccCCH
Q 022555 108 Q---FGAD---VI--MT-------------------SESCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLIEP 153 (295)
Q Consensus 108 ~---~~~~---v~--~~-------------------~~~~~g~~~~i~~al~~------~~-~~~d~vlv~~~D~Pli~~ 153 (295)
+ +|+. +. .+ ....+.|...++.+|.. +. ..-+++++...|.++...
T Consensus 114 ~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~ 193 (405)
T 3oc9_A 114 EHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKD 193 (405)
T ss_dssp HTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCS
T ss_pred hCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCccccc
Confidence 4 2431 21 10 01223444445555432 21 234789999999988743
Q ss_pred HHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCC-CceEEEECCCC--eEEEeecCCCCCCCCCCCCCC---CCceEEEeE
Q 022555 154 EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHG--YAIYFSRGLIPYNKSGKVNPQ---FPYLLHLGI 227 (295)
Q Consensus 154 ~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p-~~~~v~~d~~g--~v~~~~~~~i~~~r~~~~~~~---~p~~~~~Gi 227 (295)
. .-.++..+.+. ++.++..+++.+ +| ..++++...+| +++.+.+-+. ..+ .+... .-+..|+++
T Consensus 194 ~-Dp~~lg~~~~~-~~d~~~kvv~k~-----~~dek~Gvl~~~dg~~~vvEysei~~--e~e-~~~~~g~l~fn~~Ni~~ 263 (405)
T 3oc9_A 194 V-DPNMIGYMDLL-QSEICIKIVKKG-----FKEEKVGVLVKEQERIKVVEYTELTD--ELN-KQLSNGEFIYNCGHISI 263 (405)
T ss_dssp S-CHHHHHHHHHT-TCSEEEEEEECC-----STTCSCCEEEEETTEEEEECGGGCCT--TTT-CBCTTSCBSSCEEEEEE
T ss_pred C-CHHHHHHHHHc-CCCEEEEEEECC-----CCCCccceEEEECCeeEEEEEeeCCH--HHh-hcCCCCceeeccceeEe
Confidence 2 22344444432 233344334432 12 23444433345 5555555331 111 11111 123567899
Q ss_pred EEecHHHHhhc
Q 022555 228 QSYDSNFLKIY 238 (295)
Q Consensus 228 yif~~~~l~~~ 238 (295)
++|+.++|...
T Consensus 264 h~fs~~fL~~i 274 (405)
T 3oc9_A 264 NGYSTSFLEKA 274 (405)
T ss_dssp EEEEHHHHHHH
T ss_pred eecCHHHHHHh
Confidence 99999999853
No 56
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=98.81 E-value=9.6e-09 Score=97.70 Aligned_cols=180 Identities=13% Similarity=0.057 Sum_probs=100.9
Q ss_pred ceEEEEEcCCCCCCCC---CccccccC-CcchHHHHHHHHhhCC-----CCCeEEEECC---chHHHHHHH-H---cCC-
Q 022555 49 RVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT-----TLDHLVVATD---DEKIAECCQ-Q---FGA- 111 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~---~K~l~~i~-gkpLl~~~l~~l~~~~-----~i~~IvVv~~---~~~i~~~~~-~---~~~- 111 (295)
++.+||||||.||||+ ||++++++ |+|+|++.++++.+.+ .+ .+++.+. ++.+.++++ + +|+
T Consensus 75 k~avViLAGGlGTRLg~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~i-p~viMtS~~t~e~t~~~f~~~~~~fGl~ 153 (505)
T 2oeg_A 75 STVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHL-RFMLMDSFNTSASTKSFLKARYPWLYQV 153 (505)
T ss_dssp TEEEEEEECCCCGGGTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTC-EEEEEECHHHHHHHHHHHHHHCHHHHTT
T ss_pred cceEEEEcCCcccccCCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCc-CEEEEeCCCCHHHHHHHHhhhhhccCCC
Confidence 6889999999999997 89999999 9999999999998652 13 4555554 466777765 3 344
Q ss_pred --eE--EeC---------------------CCCCCCcHHHHHHHH------HHcc-ccCCEEEEEeCCcccCCHHHHHHH
Q 022555 112 --DV--IMT---------------------SESCRNGTERCNEAL------QKLE-KKYDIVVNIQGDEPLIEPEIIDGV 159 (295)
Q Consensus 112 --~v--~~~---------------------~~~~~g~~~~i~~al------~~~~-~~~d~vlv~~~D~Pli~~~~i~~l 159 (295)
.+ +.+ .+..+.|+.+++.++ +.+. ...++++++++|.. ....+. .+
T Consensus 154 ~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL-~~~~D~-~l 231 (505)
T 2oeg_A 154 FDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNL-GATIDK-RV 231 (505)
T ss_dssp CCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCT-TCCCCH-HH
T ss_pred ccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCcc-ccccCH-HH
Confidence 22 200 011223444444433 3321 23578999999994 322223 55
Q ss_pred HHHHHh-CCCcEEEEeeeeCCCCCCCCCCceEEEEC-------CCCe-------EEEeecCCCCCCCCCCCCCCCC-ceE
Q 022555 160 VKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVD-------NHGY-------AIYFSRGLIPYNKSGKVNPQFP-YLL 223 (295)
Q Consensus 160 i~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~v~~d-------~~g~-------v~~~~~~~i~~~r~~~~~~~~p-~~~ 223 (295)
+..+.+ +.+. ++.+++.+. .. ..++++.. .+|+ +.-.....+|..-...+..... .+.
T Consensus 232 lg~~~~~~ad~--~~~v~~k~~--~d--~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~ 305 (505)
T 2oeg_A 232 LAYMEKEKIDF--LMEVCRRTE--SD--KKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFF 305 (505)
T ss_dssp HHHHHHHTCSE--EEEEEECCT--TC--CSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEE
T ss_pred HHHHHhcCCcE--EEEEEEecC--Cc--cceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcccCccccCee
Confidence 555543 3333 333344421 11 12444433 5677 3322112122110000011122 357
Q ss_pred EEeEEEecHHHHhh
Q 022555 224 HLGIQSYDSNFLKI 237 (295)
Q Consensus 224 ~~Giyif~~~~l~~ 237 (295)
|++...|+-+++..
T Consensus 306 Ninn~~~~l~~l~~ 319 (505)
T 2oeg_A 306 NTNNLWIRLPVLLE 319 (505)
T ss_dssp EEEEEEEEHHHHHH
T ss_pred EEEEEEEEHHHHHH
Confidence 99999999998875
No 57
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=98.81 E-value=2.1e-08 Score=95.25 Aligned_cols=182 Identities=19% Similarity=0.132 Sum_probs=103.5
Q ss_pred CceEEEEEcCCCCCCCC---CccccccC---CcchHHHHHHHHhhCC-------------CCCeEEEECC--chHHHHHH
Q 022555 48 SRVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLAT-------------TLDHLVVATD--DEKIAECC 106 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~---~K~l~~i~---gkpLl~~~l~~l~~~~-------------~i~~IvVv~~--~~~i~~~~ 106 (295)
.++.+||||||.||||+ ||++++++ |+|+|++.++++.+.. .+..++..++ ++.+.+++
T Consensus 102 gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~ 181 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFF 181 (486)
T ss_dssp TCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHH
T ss_pred CCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHH
Confidence 36789999999999997 89999999 9999999999998641 2555555554 45567777
Q ss_pred HH---cCCe---EE--eC-------CCC-------------CCCcHHHHHHHHHH------c-cccCCEEEEEeCCcccC
Q 022555 107 QQ---FGAD---VI--MT-------SES-------------CRNGTERCNEALQK------L-EKKYDIVVNIQGDEPLI 151 (295)
Q Consensus 107 ~~---~~~~---v~--~~-------~~~-------------~~g~~~~i~~al~~------~-~~~~d~vlv~~~D~Pli 151 (295)
++ +|+. +. .+ .+. .+.|...++.++.. + ...-+++.+...|..++
T Consensus 182 ~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~ 261 (486)
T 2yqc_A 182 IENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLV 261 (486)
T ss_dssp HHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTC
T ss_pred hhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCcee
Confidence 54 3431 21 10 110 23344455555432 2 12357899999999887
Q ss_pred CHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCceEEEECC--CCe--EEEeecCCCCCCCCCCCC----CCCCce
Q 022555 152 EPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDN--HGY--AIYFSRGLIPYNKSGKVN----PQFPYL 222 (295)
Q Consensus 152 ~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~--~g~--v~~~~~~~i~~~r~~~~~----~~~p~~ 222 (295)
...+. .++..+.+ +.+ ++..+++.+. .. ..++++... +|+ ++.+.+.+.. .++.... ....+.
T Consensus 262 ~~~Dp-~~lg~~~~~~~~--~~~~vv~k~~--~~--e~~Gvl~~~~~dg~~~vvEy~E~~~~-~~~~~~~~~~~~~~~~~ 333 (486)
T 2yqc_A 262 KVADP-IFIGFAIAKKFD--LATKVVRKRD--AN--ESVGLIVLDQDNQKPCVIEYSEISQE-LANKKDPQDSSKLFLRA 333 (486)
T ss_dssp CTTCH-HHHHHHHHHTCS--EEEEEEECCS--TT--CCCCEEEEETTTTEEEEECGGGSCHH-HHHCEETTEEEEESSCE
T ss_pred eccCH-HHHHHHHHcCCC--EEEEEEEcCC--CC--CceeEEEEEecCCCEEEEEEecCCHH-Hhhcccccccccccccc
Confidence 32221 23444433 333 3333333311 11 123443322 564 5555554310 0100000 001357
Q ss_pred EEEeEEEecHHHHhh
Q 022555 223 LHLGIQSYDSNFLKI 237 (295)
Q Consensus 223 ~~~Giyif~~~~l~~ 237 (295)
.|+|.++|+.++|..
T Consensus 334 ~Ni~~~~~~l~~L~~ 348 (486)
T 2yqc_A 334 ANIVNHYYSVEFLNK 348 (486)
T ss_dssp EEEEEEEEEHHHHHH
T ss_pred eeEEEEEEeHHHHHH
Confidence 899999999999876
No 58
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=97.89 E-value=3.7e-05 Score=66.47 Aligned_cols=118 Identities=17% Similarity=0.115 Sum_probs=74.7
Q ss_pred CCceEEEEEcC----C-CCCCCC----CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHH-----HHHHHHcCCe
Q 022555 47 RSRVVGIIPAR----F-ASSRFE----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI-----AECCQQFGAD 112 (295)
Q Consensus 47 ~~~i~aiIlAa----G-~gsRl~----~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i-----~~~~~~~~~~ 112 (295)
|++...||++. | .-|||. +..-..+ -++|+.++++.+.+.+ .+.++++++++.. ..+. ..++.
T Consensus 2 ~~~~~liv~~K~P~~g~~KTRL~~~l~~~~aa~l-~~~ll~~tl~~~~~~~-~~~vvvvt~~~~~~~~~~~~~~-~~~~~ 78 (242)
T 3cgx_A 2 MSESCILFFVKYPEPGKVKTRLGEVVGNDKAAML-YRHFVQDMLQGLARLH-ADLHICYVPGDADLPEKFKAWL-GPQHM 78 (242)
T ss_dssp CCSEEEEEEECCCCTTTSCHHHHHHHCHHHHHHH-HHHHHHHHHHHHTTSS-SEEEEEECCCCTTHHHHHHHHH-CTTSE
T ss_pred CCCCEEEEEeCCCCCCCcccccCccCCHHHHHHH-HHHHHHHHHHHHHhCC-CCEEEEEcCCchhhhhhhhhhc-cCCcE
Confidence 34455666663 2 446663 1111122 2689999999998874 6777777764222 2222 12343
Q ss_pred EEeCCCCCCCcHHHHHHHHHHc-cccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555 113 VIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 113 v~~~~~~~~g~~~~i~~al~~~-~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~ 170 (295)
+ .++...+...++.+|+..+ ....+.++++.+|+|++++++|+++++.+.+ .+.+
T Consensus 79 ~--~~q~~~gLg~rl~~a~~~~~~~~~~~vliigaD~P~L~~~~l~~a~~~l~~-~d~V 134 (242)
T 3cgx_A 79 F--AAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPDYPCELVQKALNDLQH-YDAA 134 (242)
T ss_dssp E--EECCSSSHHHHHHHHHHHHHHTTCSEEEEECSSCTTCCHHHHHHHHHHTTT-CSEE
T ss_pred E--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCHHHHHHHHHHhcc-CCeE
Confidence 3 3333334456888888775 3345789999999999999999999987764 3443
No 59
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=97.83 E-value=0.00061 Score=64.63 Aligned_cols=188 Identities=11% Similarity=0.054 Sum_probs=103.7
Q ss_pred CCCCCceEEEEEcCCCCCCCC---CccccccC-CcchHHHHHHHHhhC----CCCCeEEEECC---chHHHHHHHHc---
Q 022555 44 KNFRSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLA----TTLDHLVVATD---DEKIAECCQQF--- 109 (295)
Q Consensus 44 ~~~~~~i~aiIlAaG~gsRl~---~K~l~~i~-gkpLl~~~l~~l~~~----~~i~~IvVv~~---~~~i~~~~~~~--- 109 (295)
+....++.+|+||||.|+||| ||.++++. |+++++..+++++.. +..-..+|.|+ ++.+.++++++
T Consensus 122 ~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~f 201 (528)
T 3r3i_A 122 SSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHC 201 (528)
T ss_dssp CTTCTTEEEEEECCCBCTTTTCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTTS
T ss_pred hhhcCceEEEEeCCCCccccCCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCcc
Confidence 345678999999999999997 89999995 899999999998754 21224566665 35555555543
Q ss_pred CCeE--EeCC-------------------------CCCCCcHHHHHHHHHH------c-cccCCEEEEEeCCcccCCHHH
Q 022555 110 GADV--IMTS-------------------------ESCRNGTERCNEALQK------L-EKKYDIVVNIQGDEPLIEPEI 155 (295)
Q Consensus 110 ~~~v--~~~~-------------------------~~~~g~~~~i~~al~~------~-~~~~d~vlv~~~D~Pli~~~~ 155 (295)
+.++ +.+. ...+.|...++.+|.. + ...-+++.+...|+++... +
T Consensus 202 g~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~v-D 280 (528)
T 3r3i_A 202 RVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATV-D 280 (528)
T ss_dssp SCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCC-C
T ss_pred CCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCccccc-C
Confidence 2332 1110 0122333345555432 2 1245799999999987653 1
Q ss_pred HHHHHHHHHhC---CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCCCC-CCCCCCCCCCC-ceEEEeEEEe
Q 022555 156 IDGVVKALQAA---PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY-NKSGKVNPQFP-YLLHLGIQSY 230 (295)
Q Consensus 156 i~~li~~~~~~---~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~-~r~~~~~~~~p-~~~~~Giyif 230 (295)
. .++..+.+. .++.++.-+++-+. .. ..++++...+|+..-.....+|. ..+ .+..... .+.|++...|
T Consensus 281 p-~~Lg~~~~~~~~~~~d~~~kVv~Kt~--~d--ek~Gvl~~~dGk~~vvEyseip~e~~~-~~~g~~~f~~~Ntnnlw~ 354 (528)
T 3r3i_A 281 L-YILNHLMNPPNGKRCEFVMEVTNKTR--AD--VKGGTLTQYEGKLRLVEIAQVPKAHVD-EFKSVSKFKIFNTNNLWI 354 (528)
T ss_dssp H-HHHHHHSSCSSSCCCSEEEEECCCCT--TC--CSSCEEECSSSSCEEECTTSSCGGGTT-TSSCSSSCCCCEEEEEEE
T ss_pred H-HHHHHHHhcccccCCcEEEEEeEccc--cC--CcccEEEEECCeEEEEEecCCChhHhh-ccCCcccCCeEEEEEEEE
Confidence 1 233333321 12333333332211 01 12444555566543222222221 111 1112223 3579999999
Q ss_pred cHHHHhhc
Q 022555 231 DSNFLKIY 238 (295)
Q Consensus 231 ~~~~l~~~ 238 (295)
+-++|.+.
T Consensus 355 ~L~~L~~v 362 (528)
T 3r3i_A 355 SLAAVKRL 362 (528)
T ss_dssp EHHHHHHH
T ss_pred EHHHHHHH
Confidence 99998753
No 60
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=96.76 E-value=0.0011 Score=64.08 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCCCCCC---CccccccC---CcchHHHHHHHHhhCCCC-CeEEEECC---chHHHHHHHHcCC
Q 022555 49 RVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLATTL-DHLVVATD---DEKIAECCQQFGA 111 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~---~K~l~~i~---gkpLl~~~l~~l~~~~~i-~~IvVv~~---~~~i~~~~~~~~~ 111 (295)
++.+|+||||.|+||| ||.+++++ |+++++..++++++..++ -.++|.|+ ++.+.+++++++.
T Consensus 114 kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl 186 (630)
T 3ogz_A 114 KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQL 186 (630)
T ss_dssp GEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTC
T ss_pred hceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCC
Confidence 7889999999999998 89999996 999999999998853222 24666665 4677777777654
No 61
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=96.34 E-value=0.004 Score=58.54 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=46.3
Q ss_pred ceEEEEEcCCCCCCCC---Ccccccc-CCcchHHHHHHHHhhC----CCCCeEEEECC---chHHHHHHHH
Q 022555 49 RVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLA----TTLDHLVVATD---DEKIAECCQQ 108 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~---~K~l~~i-~gkpLl~~~l~~l~~~----~~i~~IvVv~~---~~~i~~~~~~ 108 (295)
++.+|+||||.||||| ||.++++ .|+++++..+++++.. +..-.++|.|+ ++.+.+++++
T Consensus 76 kvavvlLaGGlGTRLG~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k 146 (484)
T 3gue_A 76 QAVVLKLNGGLGTGMGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRK 146 (484)
T ss_dssp TEEEEEEECCCCGGGTCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGG
T ss_pred hcEEEEEcCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHh
Confidence 7899999999999997 8999999 7899999999988742 11125667665 4566666653
No 62
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=96.09 E-value=0.088 Score=44.36 Aligned_cols=94 Identities=15% Similarity=0.232 Sum_probs=60.8
Q ss_pred cchHHHHHHHHhhCCCCC-eEEEECC--chHHHHHHHHc----CCeEEeCCCC------CCCc-HHHHHHHHHHccccCC
Q 022555 74 KPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQF----GADVIMTSES------CRNG-TERCNEALQKLEKKYD 139 (295)
Q Consensus 74 kpLl~~~l~~l~~~~~i~-~IvVv~~--~~~i~~~~~~~----~~~v~~~~~~------~~g~-~~~i~~al~~~~~~~d 139 (295)
...|..+++.+.+...-+ +|+|+-+ .+...++++++ ++.++..+.. ...| ..+...|++.. ..+
T Consensus 13 ~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a--~g~ 90 (255)
T 1qg8_A 13 SDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMA--EGE 90 (255)
T ss_dssp TTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHC--CCS
T ss_pred HHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHHHc--CCC
Confidence 457788888887543222 6777654 34555555544 4555544310 1233 34456777776 478
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555 140 IVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 140 ~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~ 170 (295)
+++++++|. ++.+..+..+++.+.++++..
T Consensus 91 ~i~~lD~Dd-~~~~~~l~~~~~~~~~~~~~~ 120 (255)
T 1qg8_A 91 YITYATDDN-IYMPDRLLKMVRELDTHPEKA 120 (255)
T ss_dssp EEEEEETTE-EECTTHHHHHHHHHHHCTTCC
T ss_pred EEEEeCCCC-ccChHHHHHHHHHHHhCCCce
Confidence 999999999 568899999999998765443
No 63
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=95.76 E-value=0.14 Score=45.48 Aligned_cols=108 Identities=18% Similarity=0.125 Sum_probs=70.9
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC--CCCeEEEECC--chHHHHHHHHcCCeEEeC------
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT--TLDHLVVATD--DEKIAECCQQFGADVIMT------ 116 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~--~i~~IvVv~~--~~~i~~~~~~~~~~v~~~------ 116 (295)
++++.+||++-. ....|..+++.+.+.. ...+|+||-+ .+...+++++++..+...
T Consensus 47 ~~~vSViIp~yN--------------~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~ 112 (329)
T 3ckj_A 47 GRTISVVLPALD--------------EEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPE 112 (329)
T ss_dssp TCCEEEEEEESS--------------CTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTT
T ss_pred CCcEEEEEeeCC--------------CHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeecc
Confidence 467888888753 2345677888876542 2357887764 355566777777664321
Q ss_pred CCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555 117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 117 ~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~ 170 (295)
.+...|-..++..|++.. ..|+++++++|.-.+.++.+..+++.+.++++..
T Consensus 113 ~~~n~G~~~a~n~g~~~a--~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~ 164 (329)
T 3ckj_A 113 VPIRPGKGEALWRSLAAS--RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVH 164 (329)
T ss_dssp SCCCCSHHHHHHHHHHHC--CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCC
T ss_pred CCCCCCHHHHHHHHHHhC--CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCcc
Confidence 222234345567788776 4689999999995368899999999876554443
No 64
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=95.72 E-value=0.19 Score=41.76 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=66.2
Q ss_pred CCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCC-eEEEECC--chH----HHHHHHHc-CCeEEeCC
Q 022555 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DEK----IAECCQQF-GADVIMTS 117 (295)
Q Consensus 46 ~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~-~IvVv~~--~~~----i~~~~~~~-~~~v~~~~ 117 (295)
.++++.+||++-. ....|..+++.+.+...-+ +|+||-+ .+. ++++..++ .+.++. .
T Consensus 3 ~~p~vsViIp~yn--------------~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~-~ 67 (240)
T 3bcv_A 3 LIPKVSVIVPIYN--------------VEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH-K 67 (240)
T ss_dssp CCCSEEEEEEESS--------------CTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE-C
T ss_pred CCCcEEEEEecCC--------------CHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE-C
Confidence 3567888888653 2346788888887543222 6776654 222 23333333 344443 2
Q ss_pred CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCc
Q 022555 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDA 169 (295)
Q Consensus 118 ~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~ 169 (295)
.-.|...+.-.|++.. ..++++++++|. ++.+..++.+++.+.+ +.+.
T Consensus 68 -~n~G~~~a~N~g~~~a--~g~~i~~lD~Dd-~~~~~~l~~l~~~~~~~~~~~ 116 (240)
T 3bcv_A 68 -KNAGLGMACNSGLDVA--TGEYVAFCDSDD-YVDSDMYMTMYNVAQKYTCDA 116 (240)
T ss_dssp -CCCCHHHHHHHHHHHC--CSSEEEECCTTC-CCCTTHHHHHHHHHHHHTCSE
T ss_pred -CCCChHHHHHHHHHHc--CCCEEEEECCCC-cCCHHHHHHHHHHHHhcCCCE
Confidence 2234445566788877 468999999998 6789999999998876 4343
No 65
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=95.70 E-value=0.12 Score=51.96 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=64.4
Q ss_pred chHHHHHHHHhhCCCCC---eEEEECCc--h-------------------HHHHHHHHcCCeEEeCCCCCCCcHHHHHHH
Q 022555 75 PMIQRTWERSKLATTLD---HLVVATDD--E-------------------KIAECCQQFGADVIMTSESCRNGTERCNEA 130 (295)
Q Consensus 75 pLl~~~l~~l~~~~~i~---~IvVv~~~--~-------------------~i~~~~~~~~~~v~~~~~~~~g~~~~i~~a 130 (295)
.+++.+++.+.+...-+ +|+|+.+. + .++++++++++.++.+++...|-...+..|
T Consensus 154 ~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~~~~~~~GKa~alN~g 233 (802)
T 4hg6_A 154 DMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERNEHAKAGNMSAA 233 (802)
T ss_dssp HHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEECSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEEecCCCCcchHHHHHH
Confidence 36688999987654332 68888762 1 233445667888776654322333457788
Q ss_pred HHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555 131 LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 131 l~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~ 170 (295)
++.. ..|.++++++|. ..+++.++++++.+.++++..
T Consensus 234 l~~a--~gd~Il~lDaD~-~~~pd~L~~lv~~~~~dp~v~ 270 (802)
T 4hg6_A 234 LERL--KGELVVVFDADH-VPSRDFLARTVGYFVEDPDLF 270 (802)
T ss_dssp HHHC--CCSEEEECCTTE-EECTTHHHHHHHHHHHSSSCC
T ss_pred HHhc--CCCEEEEECCCC-CcChHHHHHHHHHHhcCCCeE
Confidence 8877 478999999999 568999999999997665543
No 66
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=95.64 E-value=0.096 Score=48.02 Aligned_cols=113 Identities=19% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCC------C
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTS------E 118 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~------~ 118 (295)
.+++.+|||+-.....+ ...|..+.+.+++.+...+|+||-+ .+...+++++++..++... +
T Consensus 93 ~p~vSVVIP~yNe~~~l----------~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~ 162 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTV----------GGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYG 162 (387)
T ss_dssp TCCEEEEEEESSCTTTH----------HHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGC
T ss_pred CCeEEEEEEcCCCHHHH----------HHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHhCchhcccceeEecCC
Confidence 57789999986544333 1233333333344443458888765 3555677777777664321 1
Q ss_pred CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (295)
Q Consensus 119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v 171 (295)
...|-..++..|++.. ..|+++++++|.-..+++.+..+++.+.+++++.+
T Consensus 163 ~n~G~g~A~n~G~~~A--~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~ 213 (387)
T 3f1y_A 163 DAHGKGDAMWRALSVT--RGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRF 213 (387)
T ss_dssp SCCSHHHHHHHHTTTC--CSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCE
T ss_pred ccCCHHHHHHHHHHhc--CCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceE
Confidence 1223334566777766 46899999999943689999999999976544433
No 67
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=94.75 E-value=0.4 Score=44.62 Aligned_cols=108 Identities=7% Similarity=0.042 Sum_probs=70.5
Q ss_pred CCCceEEEEEcCCCCCCCCCccccccCCc-chHHHHHHHHhhCCCC---CeEEEECC--ch-H----HHHHHHHcC--Ce
Q 022555 46 FRSRVVGIIPARFASSRFEGKPLVNILGK-PMIQRTWERSKLATTL---DHLVVATD--DE-K----IAECCQQFG--AD 112 (295)
Q Consensus 46 ~~~~i~aiIlAaG~gsRl~~K~l~~i~gk-pLl~~~l~~l~~~~~i---~~IvVv~~--~~-~----i~~~~~~~~--~~ 112 (295)
.++++.+||++-. .. ..|..+++.+.+...- .+|+||-+ .+ . ++++.++++ +.
T Consensus 27 ~~p~vSVIIp~yN--------------~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~ 92 (472)
T 1xhb_A 27 NLPTTSVVIVFHN--------------EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVH 92 (472)
T ss_dssp CCCCEEEEEEESS--------------CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEE
T ss_pred CCCCeEEEEEeCC--------------CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEE
Confidence 4667888888643 23 5778888888764322 27777764 22 2 334444444 55
Q ss_pred EEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555 113 VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (295)
Q Consensus 113 v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v 171 (295)
++..++ -.|...+...|++.. ..|.++++++|. .+++..|+.+++.+.++++.++
T Consensus 93 vi~~~~-n~G~~~a~N~g~~~A--~gd~i~flD~D~-~~~p~~L~~ll~~~~~~~~~~v 147 (472)
T 1xhb_A 93 VIRMEQ-RSGLIRARLKGAAVS--RGQVITFLDAHC-ECTAGWLEPLLARIKHDRRTVV 147 (472)
T ss_dssp EEECSS-CCCHHHHHHHHHHHC--CSSEEEEEESSE-EECTTCHHHHHHHHHHCTTEEE
T ss_pred EEECCC-CCChHHHHHHHHHhc--cCCeEEEECCCe-EeCccHHHHHHHHHHhCCCEEE
Confidence 554432 234445566778776 478999999998 5789999999999987665443
No 68
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=94.28 E-value=0.26 Score=46.44 Aligned_cols=110 Identities=6% Similarity=0.022 Sum_probs=69.4
Q ss_pred CCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCC---eEEEECC---chHHHHHHHHc-CCeEEeCC
Q 022555 45 NFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD---HLVVATD---DEKIAECCQQF-GADVIMTS 117 (295)
Q Consensus 45 ~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~---~IvVv~~---~~~i~~~~~~~-~~~v~~~~ 117 (295)
..++++.+||++-... ...|..+++.+.+...-. +|+||-+ ++.+.....+. ++.++..+
T Consensus 63 ~~~p~vSVIIp~yN~~-------------~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~~v~vi~~~ 129 (501)
T 2ffu_A 63 VDLPATSVVITFHNEA-------------RSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRND 129 (501)
T ss_dssp SSCCCEEEEEEESSCC-------------HHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECS
T ss_pred cCCCCEEEEEEeCcCc-------------HHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCCCEEEEECC
Confidence 3466788888864322 126788888776432222 7777764 34434444333 35555433
Q ss_pred CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (295)
Q Consensus 118 ~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v 171 (295)
+ -.|...+...|++.. ..|.++++++|. .++++.|..+++.+.+++..++
T Consensus 130 ~-n~G~~~A~N~G~~~A--~gd~i~flD~D~-~~~p~~L~~ll~~~~~~~~~vv 179 (501)
T 2ffu_A 130 R-REGLMRSRVRGADAA--QAKVLTFLDSHC-ECNEHWLEPLLERVAEDRTRVV 179 (501)
T ss_dssp S-CCHHHHHHHHHHHHC--CSSEEEECCSSE-EECTTCHHHHHHHHHHCTTEEE
T ss_pred C-CcCHHHHHHHHHHhc--CCCEEEEECCCc-ccCccHHHHHHHHHHhCCCeEE
Confidence 2 223344566778777 478999999999 5688999999999987655443
No 69
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=93.58 E-value=0.31 Score=47.09 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=70.0
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC--CCCeEEEECC--chHHHHHHHHc----CCeEE
Q 022555 43 SKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT--TLDHLVVATD--DEKIAECCQQF----GADVI 114 (295)
Q Consensus 43 ~~~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~--~i~~IvVv~~--~~~i~~~~~~~----~~~v~ 114 (295)
+...++++.+||++-. ....|..+++.+.... .-.+|+|+-+ .+...++++++ ++.++
T Consensus 88 ~~~~~p~vsviIp~~n--------------~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i 153 (625)
T 2z86_A 88 KQLIIDGLSIVIPTYN--------------RAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYV 153 (625)
T ss_dssp --CCCCCEEEEEEESS--------------CHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEE
T ss_pred ccccCCcEEEEEecCC--------------cHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEE
Confidence 3344567888888642 2357788898887642 1236777654 34445555543 45555
Q ss_pred eCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555 115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (295)
Q Consensus 115 ~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (295)
..+....|...+.-.|+... ..+.++++++|. .+++..+..+++.+.++++.
T Consensus 154 ~~~~~~~g~~~a~N~g~~~a--~g~~v~~lD~D~-~~~~~~l~~~~~~~~~~~~~ 205 (625)
T 2z86_A 154 RQKDYGYQLCAVRNLGLRAA--KYNYVAILDCDM-APNPLWVQSYMELLAVDDNV 205 (625)
T ss_dssp EECCCSCCHHHHHHHHHHHC--CSSEEEEECTTE-EECTTHHHHHHHHHHHCTTE
T ss_pred EeCCCCcchhHHHHHHHHhC--CcCEEEEECCCC-CCCHHHHHHHHHHHhcCCce
Confidence 44322112334556778777 478999999999 45899999999999876543
No 70
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=93.20 E-value=0.51 Score=45.34 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=68.4
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCC---eEEEECC---chH----HHHHHHHc-CCeEEe
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD---HLVVATD---DEK----IAECCQQF-GADVIM 115 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~---~IvVv~~---~~~----i~~~~~~~-~~~v~~ 115 (295)
++++.+||++-... -..|..+++.+.+...-+ +||||-+ ++. ++++++++ .+.++.
T Consensus 111 ~P~vSVIIp~yNe~-------------~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~ 177 (570)
T 2d7i_A 111 LPNTSIIIPFHNEG-------------WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILR 177 (570)
T ss_dssp CCCEEEEEEESSCC-------------HHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEE
T ss_pred CCCeEEEEEECCCC-------------HHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 45677777754322 157788888876533222 6777764 222 23333333 355554
Q ss_pred CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 022555 116 TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (295)
Q Consensus 116 ~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~ 172 (295)
.++ -.|-..+...|++.. ..|.++++++|. .+++..|+.+++.+.++++.+++
T Consensus 178 ~~~-n~G~~~A~N~G~~~A--~gd~i~fLD~D~-~~~p~~L~~ll~~l~~~~~~vv~ 230 (570)
T 2d7i_A 178 TKK-REGLIRTRMLGASVA--TGDVITFLDSHC-EANVNWLPPLLDRIARNRKTIVC 230 (570)
T ss_dssp CSS-CCCHHHHHHHHHHHC--CSSEEEECCSSE-EECTTCSHHHHHHHHHCTTEEEE
T ss_pred CCC-CCCHHHHHHHHHHhc--CCCEEEEEcCCc-cccccHHHHHHHHHHhCCCEEEe
Confidence 432 234445566778776 468999999999 45889999999999877665443
No 71
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=92.90 E-value=0.76 Score=44.29 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=59.4
Q ss_pred CCcchHHHHHHHHhhCCCCC-eEEEECC--chHHHHHHHH----c-CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555 72 LGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQ----F-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~i~-~IvVv~~--~~~i~~~~~~----~-~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv 143 (295)
+....|..+++.+.+....+ +|+|+-+ .+...+++++ . .+.++. . .-.|...+...|++.. ..|++++
T Consensus 385 n~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~~-~-~n~G~~~a~n~g~~~a--~g~~i~~ 460 (625)
T 2z86_A 385 NCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFIS-Q-KNKGIGSASNTAVRLC--RGFYIGQ 460 (625)
T ss_dssp SCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEE-E-CCCCHHHHHHHHHHHC--CSSEEEE
T ss_pred CCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEEe-C-CCCCHHHHHHHHHHhc--CCCEEEE
Confidence 34567888998887543333 6666653 2323333332 2 344443 2 2234445567788776 4689999
Q ss_pred EeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555 144 IQGDEPLIEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~~~d~~ 170 (295)
+++|. .+.+..++.+++.+.++++..
T Consensus 461 ld~D~-~~~~~~l~~~~~~~~~~~~~~ 486 (625)
T 2z86_A 461 LDSDD-FLEPDAVELCLDEFRKDLSLA 486 (625)
T ss_dssp CCTTC-EECTTHHHHHHHHHHHCTTCS
T ss_pred ECCCc-ccChhHHHHHHHHHHhCCCee
Confidence 99998 568999999999887665543
No 72
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=89.08 E-value=3.2 Score=37.95 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=35.1
Q ss_pred CcHHHHHHHH----HHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555 122 NGTERCNEAL----QKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (295)
Q Consensus 122 g~~~~i~~al----~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v 171 (295)
|-..++..|+ ... ..|.+++++||.=-.+++.+.++++.+.++.|.++
T Consensus 75 GkG~Al~~G~~~Al~~a--~gd~vv~mDADlq~~~P~~i~~Ll~~l~~g~D~V~ 126 (397)
T 2bo4_A 75 GKGDGMNTALRYFLEET--QWERIHFYDADITSFGPDWITKAEEAADFGYGLVR 126 (397)
T ss_dssp SHHHHHHHHHHHHHHHC--CCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCHHHHHHHHHHHHcCCCEEE
Confidence 4445678888 554 47899999999622589999999998876545443
No 73
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=88.65 E-value=0.89 Score=44.53 Aligned_cols=94 Identities=10% Similarity=0.100 Sum_probs=59.5
Q ss_pred CCcchHHHHHHHHhhCC----CCCeEEEECCc-------hHHHHHHHHc--CCeEEeCCCCCCCcHHHHHHHHHHccc--
Q 022555 72 LGKPMIQRTWERSKLAT----TLDHLVVATDD-------EKIAECCQQF--GADVIMTSESCRNGTERCNEALQKLEK-- 136 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~----~i~~IvVv~~~-------~~i~~~~~~~--~~~v~~~~~~~~g~~~~i~~al~~~~~-- 136 (295)
++...|..+|+.+.+.. ...+|+||-+. +.+.+.++.. .+.++..+ -.|...+.-.|+.....
T Consensus 190 N~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~--N~G~a~a~N~Gl~~A~g~~ 267 (657)
T 4fix_A 190 NRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP--NLGGSGGYSRVMYEALKNT 267 (657)
T ss_dssp SCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC--CCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC--CCCHHHHHHHHHHHHHhcC
Confidence 55678899999887542 23477777541 1334444332 35555432 22334445555655421
Q ss_pred cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCC
Q 022555 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (295)
Q Consensus 137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d 168 (295)
+.|++++++.|. .++++.|..+++.+..+++
T Consensus 268 ~~dyIlfLD~D~-~~~pd~L~~ll~~l~~~~~ 298 (657)
T 4fix_A 268 DCQQILFMDDDI-RLEPDSILRVLAMHRFAKA 298 (657)
T ss_dssp CCSEEEEECSSE-EECTHHHHHHHHHHHHBSS
T ss_pred CCCEEEEECCCC-ccChhHHHHHHHHHHhCCC
Confidence 468999999999 6789999999999876544
No 74
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=77.21 E-value=0.48 Score=46.85 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCC-CCeEEEECC--chHHHHHHH----Hc--CCeEEeCC
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQ----QF--GADVIMTS 117 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~i~~~~~----~~--~~~v~~~~ 117 (295)
||++++||++-... ..|..+++.+.+... --+|+||-+ .+...++++ ++ ++.++..+
T Consensus 1 Mp~vSVIIp~yN~~--------------~~L~~~L~Sll~Qt~~~~EIIVVDDgStD~t~~il~~~~~~~~~~i~~i~~~ 66 (729)
T 3l7i_A 1 MNKLTIIVTYYNAE--------------EYITGCLESIKQQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDKNIRFIDLD 66 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCCCH--------------HHHHHHHHHHHhCCCCCeEEEEEECCCCCcHHHHHHHHHHhCCCCEEEEECC
Confidence 45677777765333 344555555543221 125666654 233333333 22 34444332
Q ss_pred CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (295)
Q Consensus 118 ~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~ 170 (295)
+ -.|...+.-.|++.. ..++++++++|. .+.+..++.+++.+. +.+.+
T Consensus 67 ~-n~G~~~arN~gi~~A--~gdyI~flD~Dd-~~~p~~l~~l~~~l~-~~d~v 114 (729)
T 3l7i_A 67 E-NSGHAHARNIALEEV--ETPYFMFLDADD-ELASYAITFYLEKFN-NTDGL 114 (729)
T ss_dssp -----------------------------------------------------
T ss_pred C-CCCHHHHHHHHHHhc--cCCEEEEECCCC-CCChhHHHHHHHHhc-CCCEE
Confidence 2 223333455667666 368999999999 458899999999887 44443
No 75
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=61.89 E-value=70 Score=28.34 Aligned_cols=101 Identities=14% Similarity=0.228 Sum_probs=58.1
Q ss_pred CCcchHHHHHHHHhhCCC-C--CeEEEECC--chHHHHHHHHcC--CeEEeCCCC-------CCCcH-------HHHHHH
Q 022555 72 LGKPMIQRTWERSKLATT-L--DHLVVATD--DEKIAECCQQFG--ADVIMTSES-------CRNGT-------ERCNEA 130 (295)
Q Consensus 72 ~gkpLl~~~l~~l~~~~~-i--~~IvVv~~--~~~i~~~~~~~~--~~v~~~~~~-------~~g~~-------~~i~~a 130 (295)
.++|=+..+++.+.+... . ..|+|+-+ .++++++++.++ +..+..++. ...|. .++..|
T Consensus 11 yNRp~l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~~ia~h~~~a 90 (343)
T 1fo8_A 11 CDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWA 90 (343)
T ss_dssp SSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccchhHhHHHHHH
Confidence 455557888888876532 2 24666544 467777877654 332222111 11121 234456
Q ss_pred HHHccc--cCCEEEEEeCCcccCCHHHHHHHHHHH---HhCCCcEEEEe
Q 022555 131 LQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKAL---QAAPDAVFSTA 174 (295)
Q Consensus 131 l~~~~~--~~d~vlv~~~D~Pli~~~~i~~li~~~---~~~~d~~v~v~ 174 (295)
+..+-. ..+.++++..|+ .++++.++.+.+.+ +.+ ..+.++.
T Consensus 91 l~~vf~~~~~~~vIiLEDDl-~~spdF~~y~~~~l~~y~~D-~~I~~IS 137 (343)
T 1fo8_A 91 LGQIFHNFNYPAAVVVEDDL-EVAPDFFEYFQATYPLLKAD-PSLWCVS 137 (343)
T ss_dssp HHHHHTTSCCSEEEEEETTE-EECTTHHHHHHHHHHHHHHC-TTEEEEE
T ss_pred HHHHHHhccCCEEEEEcCCC-eECHHHHHHHHHHHHHhhcC-CcEEEEe
Confidence 554422 468999999999 77888776665555 444 4555553
No 76
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=61.53 E-value=66 Score=26.38 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=50.5
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCc--hHHHHHHHHcCCeEEe-CCCCCCCc---H
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFGADVIM-TSESCRNG---T 124 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~--~~i~~~~~~~~~~v~~-~~~~~~g~---~ 124 (295)
..||+-|.||=| +..+++.+.-. ..+-+.|+++. ..+.+.++++|+++.. .+....+. .
T Consensus 5 iavl~Sg~Gsnl--------------~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d 70 (211)
T 3p9x_A 5 VAIFASGSGTNA--------------EAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKTYPSKEAYE 70 (211)
T ss_dssp EEEECCTTCHHH--------------HHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCGGGSSSHHHHH
T ss_pred EEEEEeCCchHH--------------HHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeChhhcCchhhhH
Confidence 668888887743 55566654321 13334455552 4566788889998754 32222221 1
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
..+...++.. +.| ++++.+=+-+++++.++.
T Consensus 71 ~~~~~~l~~~--~~D-liv~agy~~Il~~~~l~~ 101 (211)
T 3p9x_A 71 IEVVQQLKEK--QID-FVVLAGYMRLVGPTLLGA 101 (211)
T ss_dssp HHHHHHHHHT--TCC-EEEESSCCSCCCHHHHHH
T ss_pred HHHHHHHHhc--CCC-EEEEeCchhhcCHHHHhh
Confidence 2355566665 345 555556555787766654
No 77
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=61.16 E-value=70 Score=26.53 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=42.5
Q ss_pred hHHHHHHHHhhCC-CCCeEEEECCc--hHHHHHHHHcCCeEEe-CCCCCCCc---HHHHHHHHHHccccCCEEEEEeCCc
Q 022555 76 MIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFGADVIM-TSESCRNG---TERCNEALQKLEKKYDIVVNIQGDE 148 (295)
Q Consensus 76 Ll~~~l~~l~~~~-~i~~IvVv~~~--~~i~~~~~~~~~~v~~-~~~~~~g~---~~~i~~al~~~~~~~d~vlv~~~D~ 148 (295)
.+..+++.+.+.. ..+-+.|+++. ....+.++++|++++. .+...... ...+...++.. +.| ++++.+=+
T Consensus 35 ~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~--~~D-liv~agy~ 111 (229)
T 3auf_A 35 NLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAY--GVD-LVCLAGYM 111 (229)
T ss_dssp HHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHT--TCS-EEEESSCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEECcccccchhhccHHHHHHHHhc--CCC-EEEEcChh
Confidence 4566666665432 13334566663 3456778889999864 32222221 12344555554 345 45555555
Q ss_pred ccCCHHHHHH
Q 022555 149 PLIEPEIIDG 158 (295)
Q Consensus 149 Pli~~~~i~~ 158 (295)
-+++++.++.
T Consensus 112 ~IL~~~~l~~ 121 (229)
T 3auf_A 112 RLVRGPMLTA 121 (229)
T ss_dssp SCCCHHHHHH
T ss_pred HhCCHHHHhh
Confidence 5677665543
No 78
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=58.20 E-value=75 Score=25.92 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=40.3
Q ss_pred HHHHHHHHhhCC-CCCeEEEECCc--hHHHHHHHHcCCeEEe-CCCCCCCc---HHHHHHHHHHccccCCEEEEEeCCcc
Q 022555 77 IQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFGADVIM-TSESCRNG---TERCNEALQKLEKKYDIVVNIQGDEP 149 (295)
Q Consensus 77 l~~~l~~l~~~~-~i~~IvVv~~~--~~i~~~~~~~~~~v~~-~~~~~~g~---~~~i~~al~~~~~~~d~vlv~~~D~P 149 (295)
+..+++.+.+.. ..+-+.|+++. ..+.+.++++|++++. .+....+. ...+...++.. +.| ++++.+=+-
T Consensus 17 ~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~--~~D-liv~a~y~~ 93 (212)
T 3av3_A 17 FQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELKGR--QID-WIALAGYMR 93 (212)
T ss_dssp HHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHT--TCC-EEEESSCCS
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhc--CCC-EEEEchhhh
Confidence 455666665432 23334456653 4566778889998864 32222221 12344555554 244 444455444
Q ss_pred cCCHHHHH
Q 022555 150 LIEPEIID 157 (295)
Q Consensus 150 li~~~~i~ 157 (295)
+++++.++
T Consensus 94 il~~~~l~ 101 (212)
T 3av3_A 94 LIGPTLLS 101 (212)
T ss_dssp CCCHHHHH
T ss_pred hCCHHHHh
Confidence 66665554
No 79
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=56.36 E-value=17 Score=31.65 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=70.1
Q ss_pred CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHc---CCeEEeCCCCCC
Q 022555 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQF---GADVIMTSESCR 121 (295)
Q Consensus 48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~---~~~v~~~~~~~~ 121 (295)
.+.++||.+-- | ..+|...+..+.+++.+++|+|+=+.+. -....... .+++.+......
T Consensus 28 ~~FTvvi~ty~---R-----------~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~~~n 93 (293)
T 1omz_A 28 DSFTLIMQTYN---R-----------TDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTAN 93 (293)
T ss_dssp TCEEEEEEESS---C-----------HHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSC
T ss_pred CceEEEEEeec---c-----------cHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccccCCCCccEEEEeCCCC
Confidence 45677776652 2 2578888999999999999999876321 11222233 355533222211
Q ss_pred CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEee
Q 022555 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV 175 (295)
Q Consensus 122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~ 175 (295)
.-..+.. -...+ ..+.||.++-|. .++.+.|+...+..++.++-+++...
T Consensus 94 sLnnRF~-p~~~i--~T~AVLslDDDv-~l~~~el~faF~vWr~~PdRlVGf~~ 143 (293)
T 1omz_A 94 KMRNRLQ-VFPEV--ETNAVLMVDDDT-LISAQDLVFAFSIWQQFPDQIIGFVP 143 (293)
T ss_dssp CGGGGGS-CCTTC--CSSEEEEECTTE-EECHHHHHHHHHHHTTSTTSEEESCE
T ss_pred chhhccC-CCccC--CcCEEEEEcCCC-CCCHHHHHHHHHHHHHCccceecCch
Confidence 2111211 11223 468999999998 78999999999999998999888743
No 80
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=51.09 E-value=1e+02 Score=25.22 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=50.9
Q ss_pred CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCch--HHHHHHHHcCCeEEeCCC-CCCC
Q 022555 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDE--KIAECCQQFGADVIMTSE-SCRN 122 (295)
Q Consensus 47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~~--~i~~~~~~~~~~v~~~~~-~~~g 122 (295)
|++....||+-|.|+= ++..++.+.+-. .++-+.|+++.+ ...+.++++|++++..+. ....
T Consensus 5 m~~~ri~vl~SG~gsn--------------l~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~~~~~~ 70 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSN--------------MEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFAS 70 (209)
T ss_dssp -CCEEEEEEESSCCHH--------------HHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCGGGSSS
T ss_pred CCCccEEEEEECCcHH--------------HHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCccccCC
Confidence 5555677787777773 466666665421 133344556532 234577888998865321 2212
Q ss_pred c---HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 123 G---TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 123 ~---~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
. ...+...++.. +.| ++++.+=+-+++++.++.
T Consensus 71 r~~~d~~~~~~l~~~--~~D-liv~agy~~il~~~~l~~ 106 (209)
T 4ds3_A 71 KEAHEDAILAALDVL--KPD-IICLAGYMRLLSGRFIAP 106 (209)
T ss_dssp HHHHHHHHHHHHHHH--CCS-EEEESSCCSCCCHHHHGG
T ss_pred HHHHHHHHHHHHHhc--CCC-EEEEeccccCcCHHHHhh
Confidence 1 12355556655 345 455555555777765543
No 81
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=49.96 E-value=1e+02 Score=25.10 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=38.5
Q ss_pred hHHHHHHHHhhCCCC--CeEEEECCc--hHHHHHHHHcCCeEEe-CCCCCCCc---HHHHHHHHHHccccCCEEEEEeCC
Q 022555 76 MIQRTWERSKLATTL--DHLVVATDD--EKIAECCQQFGADVIM-TSESCRNG---TERCNEALQKLEKKYDIVVNIQGD 147 (295)
Q Consensus 76 Ll~~~l~~l~~~~~i--~~IvVv~~~--~~i~~~~~~~~~~v~~-~~~~~~g~---~~~i~~al~~~~~~~d~vlv~~~D 147 (295)
.+..+++.+.+.. . +-+.|+++. ....+.++++|++++. .+...... ...+...++.. +.| ++++.+=
T Consensus 14 ~~~~~l~~l~~~~-~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~--~~D-liv~a~y 89 (216)
T 2ywr_A 14 NLQAIIDAIESGK-VNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKK--GVE-LVVLAGF 89 (216)
T ss_dssp HHHHHHHHHHTTS-SCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHT--TCC-EEEESSC
T ss_pred HHHHHHHHHHhCC-CCCeEEEEEeCCCChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhc--CCC-EEEEeCc
Confidence 4466666666532 3 334566663 4456778888998764 32222211 12344555544 234 3344444
Q ss_pred cccCCHHHH
Q 022555 148 EPLIEPEII 156 (295)
Q Consensus 148 ~Pli~~~~i 156 (295)
+-+++++.+
T Consensus 90 ~~il~~~~l 98 (216)
T 2ywr_A 90 MRILSHNFL 98 (216)
T ss_dssp CSCCCHHHH
T ss_pred hhhCCHHHH
Confidence 445555444
No 82
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=46.03 E-value=1.1e+02 Score=24.97 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=47.8
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCch--HHHHHHHHcCCeEEeCC-CCCCCcHHHH
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDE--KIAECCQQFGADVIMTS-ESCRNGTERC 127 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~~--~i~~~~~~~~~~v~~~~-~~~~g~~~~i 127 (295)
..|++-|.|+ .++..++.+.+-. .++-+.|+++.+ ...+.++++|++++..+ ... ....+
T Consensus 11 i~vl~SG~gs--------------nl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~~~--~~~~~ 74 (215)
T 3kcq_A 11 VGVLISGRGS--------------NLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPL--DIEHI 74 (215)
T ss_dssp EEEEESSCCH--------------HHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBTTB--CHHHH
T ss_pred EEEEEECCcH--------------HHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcccC--ChHHH
Confidence 5566666666 3466666664321 133344555532 23456778899886532 221 12345
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
...++.. +.| ++++.+=+-+++++.++.
T Consensus 75 ~~~L~~~--~~D-livlagy~~IL~~~~l~~ 102 (215)
T 3kcq_A 75 STVLREH--DVD-LVCLAGFMSILPEKFVTD 102 (215)
T ss_dssp HHHHHHT--TCS-EEEESSCCSCCCHHHHHH
T ss_pred HHHHHHh--CCC-EEEEeCCceEeCHHHHhh
Confidence 5666665 345 555555555777766654
No 83
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=42.65 E-value=1.2e+02 Score=26.07 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=52.4
Q ss_pred EEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcH---HH
Q 022555 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT---ER 126 (295)
Q Consensus 51 ~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~---~~ 126 (295)
..+|++-|.|+= ++..+++.+.-. .++-..|+++.+....+++++|+++...+.....-. ..
T Consensus 97 ri~vl~Sg~g~~--------------l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~ 162 (292)
T 3lou_A 97 KVLIMVSKLEHC--------------LADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQ 162 (292)
T ss_dssp EEEEEECSCCHH--------------HHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCCSSCHHHHHHH
T ss_pred EEEEEEcCCCcC--------------HHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHH
Confidence 366787777763 355555554321 244455666776677788889999865432211111 23
Q ss_pred HHHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
+...++.. +.| ++++.+=+-.++++.++.
T Consensus 163 ~~~~l~~~--~~D-livla~y~~il~~~~l~~ 191 (292)
T 3lou_A 163 WLDVFETS--GAE-LVILARYMQVLSPEASAR 191 (292)
T ss_dssp HHHHHHHH--TCS-EEEESSCCSCCCHHHHHH
T ss_pred HHHHHHHh--CCC-EEEecCchhhCCHHHHhh
Confidence 45555555 345 566666666777766654
No 84
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=42.61 E-value=83 Score=27.35 Aligned_cols=90 Identities=10% Similarity=0.082 Sum_probs=51.3
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCc---HHHH
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRNG---TERC 127 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~---~~~i 127 (295)
.+|++-|.|+= ++..+++.+.-. .++-+.|+++.+.+..+++++|+++...+.....- ...+
T Consensus 108 i~vl~Sg~g~n--------------l~~ll~~~~~g~l~~~I~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~ 173 (302)
T 3o1l_A 108 VVLMASRESHC--------------LADLLHRWHSDELDCDIACVISNHQDLRSMVEWHDIPYYHVPVDPKDKEPAFAEV 173 (302)
T ss_dssp EEEEECSCCHH--------------HHHHHHHHHTTCSCSEEEEEEESSSTTHHHHHTTTCCEEECCCCSSCCHHHHHHH
T ss_pred EEEEEeCCchh--------------HHHHHHHHHCCCCCcEEEEEEECcHHHHHHHHHcCCCEEEcCCCcCCHHHHHHHH
Confidence 66787777763 355555554321 24445566676667788888999886543211111 1235
Q ss_pred HHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
...++.. +.| ++++.+=+-+++++.++.
T Consensus 174 ~~~l~~~--~~D-liVlagym~IL~~~~l~~ 201 (302)
T 3o1l_A 174 SRLVGHH--QAD-VVVLARYMQILPPQLCRE 201 (302)
T ss_dssp HHHHHHT--TCS-EEEESSCCSCCCTTHHHH
T ss_pred HHHHHHh--CCC-EEEHhHhhhhcCHHHHhh
Confidence 5556655 344 556666666777765553
No 85
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=42.13 E-value=1.4e+02 Score=24.40 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=47.3
Q ss_pred ceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCch-HHHHHHHHcCCeEEeCCCC-CCCc---
Q 022555 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE-KIAECCQQFGADVIMTSES-CRNG--- 123 (295)
Q Consensus 49 ~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~-~i~~~~~~~~~~v~~~~~~-~~g~--- 123 (295)
+...+|++-|.|+= ++..++.+...-.++-+.|+++.+ ...+.++++|++++..+.. ...-
T Consensus 12 ~~ri~vl~SG~gsn--------------l~all~~~~~~~~~eI~~Vis~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~ 77 (215)
T 3da8_A 12 PARLVVLASGTGSL--------------LRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHPSRDAW 77 (215)
T ss_dssp SEEEEEEESSCCHH--------------HHHHHHHSSTTCSEEEEEEEESSCCHHHHHHHHTTCCEEECCGGGSSSHHHH
T ss_pred CcEEEEEEeCChHH--------------HHHHHHHHhccCCCeEEEEEeCCchHHHHHHHHcCCCEEEeCcccccchhhh
Confidence 34567787777763 345555543211133344555543 3456778889987553211 1111
Q ss_pred HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
...+...++.. +.| ++++.+=+-+++++.++.
T Consensus 78 d~~~~~~l~~~--~~D-livlagy~~iL~~~~l~~ 109 (215)
T 3da8_A 78 DVAITAATAAH--EPD-LVVSAGFMRILGPQFLSR 109 (215)
T ss_dssp HHHHHHHHHTT--CCS-EEEEEECCSCCCHHHHHH
T ss_pred hHHHHHHHHhh--CCC-EEEEcCchhhCCHHHHhh
Confidence 12344555554 345 444444444677766654
No 86
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=40.40 E-value=1.3e+02 Score=25.77 Aligned_cols=91 Identities=9% Similarity=0.121 Sum_probs=52.2
Q ss_pred EEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCc---HHH
Q 022555 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRNG---TER 126 (295)
Q Consensus 51 ~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~---~~~ 126 (295)
..+|++-|.|+= ++..+++...-. .++-+.|+++.+....+++++|+++...+.....- ...
T Consensus 92 ri~vl~Sg~g~~--------------l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~ 157 (286)
T 3n0v_A 92 KVVIMVSKADHC--------------LNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHKIPYYHFALDPKDKPGQERK 157 (286)
T ss_dssp EEEEEESSCCHH--------------HHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCBTTBHHHHHHH
T ss_pred EEEEEEeCCCCC--------------HHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHH
Confidence 366777777753 355555554321 24445566677667778888999986543221111 123
Q ss_pred HHHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
+...++.. +.| ++++.+=+-.++++.++.
T Consensus 158 ~~~~l~~~--~~D-livla~y~~il~~~~l~~ 186 (286)
T 3n0v_A 158 VLQVIEET--GAE-LVILARYMQVLSPELCRR 186 (286)
T ss_dssp HHHHHHHH--TCS-EEEESSCCSCCCHHHHHH
T ss_pred HHHHHHhc--CCC-EEEecccccccCHHHHhh
Confidence 45555555 345 566666666777766554
No 87
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=37.22 E-value=24 Score=21.49 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHh
Q 022555 277 DAPEDVEKIESFMRER 292 (295)
Q Consensus 277 dtpeDl~~ae~ll~~r 292 (295)
..|+|+..|+.++++.
T Consensus 20 ~~P~Dlq~AN~LiK~m 35 (45)
T 1j2j_B 20 SHPEDLRAANKLIKEM 35 (45)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHH
Confidence 7899999999999863
No 88
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=34.79 E-value=1.8e+02 Score=23.55 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=48.5
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCc--hHHHHHHHHcCCeEEeCC-CCCCCc---H
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFGADVIMTS-ESCRNG---T 124 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~-~~~~g~---~ 124 (295)
.+|++.|.|+ .++..++++++.. ..+-+.|+++. ....+.++++|++++..+ ....+. .
T Consensus 3 i~vl~Sg~gs--------------nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~ 68 (212)
T 1jkx_A 3 IVVLISGNGS--------------NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYD 68 (212)
T ss_dssp EEEEESSCCH--------------HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHH
T ss_pred EEEEEECCcH--------------HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCcccccchhhcc
Confidence 4566666665 3466666665432 13334556663 345677888999986532 122111 1
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
..+...++.. +.| ++++.+=+-+++++.++.
T Consensus 69 ~~~~~~l~~~--~~D-liv~agy~~il~~~~l~~ 99 (212)
T 1jkx_A 69 RELIHEIDMY--APD-VVVLAGFMRILSPAFVSH 99 (212)
T ss_dssp HHHHHHHGGG--CCS-EEEESSCCSCCCHHHHHH
T ss_pred HHHHHHHHhc--CCC-EEEEeChhhhCCHHHHhh
Confidence 2344455544 345 455555555777766554
No 89
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=34.39 E-value=85 Score=25.80 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=28.8
Q ss_pred HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (295)
Q Consensus 126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (295)
+.-.|++.. ..+++++++.|. .+++..++.+++.+.+
T Consensus 65 a~N~Gi~~A--~g~yl~fln~D~-~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 65 WHKQMLPRC--KGRYVIFCHEDV-ELVDRGYDDLVAAIEA 101 (249)
T ss_dssp HHHHHGGGC--CSSEEEEEETTE-ECSSCCHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEECCCc-ccCccHHHHHHHHHHh
Confidence 345666665 368999999999 4588889999988765
No 90
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=29.08 E-value=2.3e+02 Score=23.00 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=36.2
Q ss_pred HHHHHHcCCeEEeCCCCCCCcHHHHHHHH--HHcc-ccCCEEEEEeCC---cccCCHHHHHHHHHHHHhCCCcEEE
Q 022555 103 AECCQQFGADVIMTSESCRNGTERCNEAL--QKLE-KKYDIVVNIQGD---EPLIEPEIIDGVVKALQAAPDAVFS 172 (295)
Q Consensus 103 ~~~~~~~~~~v~~~~~~~~g~~~~i~~al--~~~~-~~~d~vlv~~~D---~Pli~~~~i~~li~~~~~~~d~~v~ 172 (295)
...+.+.|+++..... ..-.++.++.+ ..+. .++|+++++++| . -++|+.+.++++ .+.|.+.+
T Consensus 18 ~~~l~~~gi~~~l~~~--~SlI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I-~FdPe~V~rLl~---~g~DVV~G 87 (203)
T 2c0n_A 18 IDFLVKNDIEYVILSR--RNHVAVQREIALDMFLEMKDYDTLAFLDEDVVPI-EIDFQKVEAKFN---EGYDVVCG 87 (203)
T ss_dssp HHHHHHTTCCEEEECC--CSCHHHHHHHHHHHHHHCTTCCEEEEECTTEEEE-ECCHHHHHHHHH---HTCSEEEE
T ss_pred HHHHHhCCCeEEEEcc--ccchHHHHHHHHHHHHhcCCCCEEEEEeCCCCcc-ccCHHHHHHHHh---CCCCEEEE
Confidence 3445566777643322 23333222221 2222 257999999999 7 468899988883 34455443
No 91
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=24.86 E-value=49 Score=27.59 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=16.8
Q ss_pred CCceEEEEEecCCcCCCCCHHHHHHHH
Q 022555 260 NGYKMKVIKVDHEAHGVDAPEDVEKIE 286 (295)
Q Consensus 260 ~G~~v~~v~~~~~~idIdtpeDl~~ae 286 (295)
.|..+.. ...+.|||||+||..+.
T Consensus 179 ~~l~v~~---l~~l~DVDTpeDL~~l~ 202 (242)
T 3cgx_A 179 ARLEVLQ---LPDWNDVDTVWDLNVLY 202 (242)
T ss_dssp TTCCEEE---CCCBCCCCSHHHHHHHH
T ss_pred cCCCccc---CCcccCCCCHHHHHHHH
Confidence 4544442 34689999999998654
No 92
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=24.77 E-value=18 Score=26.61 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=12.8
Q ss_pred CCCCCChhhhHHHHhhccc
Q 022555 11 ESSSSTKSWIVHGIVAGAA 29 (295)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (295)
...+|+.+||+||+-|-+-
T Consensus 8 ~~~~G~~~Wi~~RiSgv~L 26 (115)
T 2wdq_D 8 LGRNGVHDFILVRATAIVL 26 (115)
T ss_dssp ---CHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 3456789999999876443
No 93
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=24.45 E-value=18 Score=18.92 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=14.7
Q ss_pred CCCCCCCCCChhhhHHHHhh
Q 022555 7 CSPSESSSSTKSWIVHGIVA 26 (295)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (295)
|+.|.++--.+-=|+|+.+.
T Consensus 1 cpss~~sL~EkHkILHrLLQ 20 (26)
T 3bej_E 1 CPSSHSSLTERHKILHRLLQ 20 (26)
T ss_pred CCCchhhHHHHHHHHHHHHH
Confidence 66676666667788998874
No 94
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=24.16 E-value=1.3e+02 Score=25.81 Aligned_cols=91 Identities=4% Similarity=-0.023 Sum_probs=51.4
Q ss_pred EEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCc-hHHHHHHHHcCCeEEeCCCCCCCcH---H
Q 022555 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDD-EKIAECCQQFGADVIMTSESCRNGT---E 125 (295)
Q Consensus 51 ~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~-~~i~~~~~~~~~~v~~~~~~~~g~~---~ 125 (295)
...||+-|.|+=| +..+++.+.-. .++-+.|+++. +.+.++++++|++++..+.....-. .
T Consensus 91 ri~vl~Sg~g~nl--------------~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~~gIp~~~~~~~~~~r~~~~~ 156 (288)
T 3obi_A 91 KVMLLVSQSDHCL--------------ADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEA 156 (288)
T ss_dssp EEEEEECSCCHHH--------------HHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTTTTCCEEECCCCTTTHHHHHH
T ss_pred EEEEEEcCCCCCH--------------HHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHHcCCCEEEeCCCcccHHHHHH
Confidence 3678888887733 55555554321 13334555666 6666777788998865332211111 2
Q ss_pred HHHHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
.+...++.. +.| ++++.+=+-.++++.++.
T Consensus 157 ~~~~~l~~~--~~D-livlagy~~il~~~~l~~ 186 (288)
T 3obi_A 157 AITALIAQT--HTD-LVVLARYMQILSDEMSAR 186 (288)
T ss_dssp HHHHHHHHH--TCC-EEEESSCCSCCCHHHHHH
T ss_pred HHHHHHHhc--CCC-EEEhhhhhhhCCHHHHhh
Confidence 344555554 345 566666666788766654
No 95
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=23.02 E-value=27 Score=17.74 Aligned_cols=7 Identities=29% Similarity=0.957 Sum_probs=5.7
Q ss_pred hhhHHHH
Q 022555 18 SWIVHGI 24 (295)
Q Consensus 18 ~~~~~~~ 24 (295)
-||+||.
T Consensus 16 LwIlDrL 22 (23)
T 3lbw_A 16 LWILDRL 22 (26)
T ss_dssp HHHHHHC
T ss_pred HHHHhhc
Confidence 5999985
No 96
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=21.75 E-value=30 Score=20.20 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=19.0
Q ss_pred CCChhhhHHHHhhccchhc-ccCeeeeeCCC
Q 022555 14 SSTKSWIVHGIVAGAAIAV-AVGARAYLGRS 43 (295)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 43 (295)
++...||.-+++.|+..-. .+...+++.|+
T Consensus 9 ~~~~~~I~~~vv~Gv~ll~~iv~~~~~~~rR 39 (41)
T 2k9y_A 9 GSGNLAVIGGVAVGVVLLLVLAGVGFFIHRR 39 (41)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred CCceEEEEeehhHHHHHHHHHHHHheeEeee
Confidence 5557899999988877644 34444444443
No 97
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=21.26 E-value=24 Score=18.40 Aligned_cols=7 Identities=29% Similarity=0.957 Sum_probs=5.5
Q ss_pred hhhHHHH
Q 022555 18 SWIVHGI 24 (295)
Q Consensus 18 ~~~~~~~ 24 (295)
-||+||.
T Consensus 19 LwIldrl 25 (26)
T 3bkd_A 19 LWILDRL 25 (26)
T ss_dssp HHHHHHC
T ss_pred HHHHhhc
Confidence 5999885
No 98
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=21.11 E-value=3.3e+02 Score=21.94 Aligned_cols=90 Identities=10% Similarity=0.113 Sum_probs=47.5
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCc--hHHHHHHHHcCCeEEe-CCCCCCCcH---
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFGADVIM-TSESCRNGT--- 124 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~--~~i~~~~~~~~~~v~~-~~~~~~g~~--- 124 (295)
..||+-|.|+ .++..++.+++-. ..+-+.|+++. ....+.++++|++++. .+.......
T Consensus 3 iaVl~SG~Gs--------------~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~ 68 (209)
T 1meo_A 3 VAVLISGTGS--------------NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFD 68 (209)
T ss_dssp EEEEESSSCT--------------THHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHH
T ss_pred EEEEEECCch--------------HHHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECccccCchhhhh
Confidence 4567777775 3455666655421 23334555653 2345677888998854 332222211
Q ss_pred HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHH
Q 022555 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (295)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~ 158 (295)
..+...++.. +.| ++++.+=+-+++++.++.
T Consensus 69 ~~~~~~l~~~--~~D-liv~a~y~~il~~~~l~~ 99 (209)
T 1meo_A 69 SAIDLVLEEF--SID-IVCLAGFMRILSGPFVQK 99 (209)
T ss_dssp HHHHHHHHHT--TCC-EEEEESCCSCCCHHHHHH
T ss_pred HHHHHHHHhc--CCC-EEEEcchhhhCCHHHHhh
Confidence 2345555555 345 455555555667665543
No 99
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=20.09 E-value=1.1e+02 Score=26.35 Aligned_cols=91 Identities=4% Similarity=0.016 Sum_probs=50.4
Q ss_pred EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC-CCCeEEEECCchH-HHHHHHHcCCeEEeCCCCCCCc---HHH
Q 022555 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEK-IAECCQQFGADVIMTSESCRNG---TER 126 (295)
Q Consensus 52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~-~i~~IvVv~~~~~-i~~~~~~~~~~v~~~~~~~~g~---~~~ 126 (295)
.+||+-|.|+=| +..+++.+.-. .++-+.|+++.+. +.++++++|+++...+.....- ...
T Consensus 91 i~vl~Sg~g~nl--------------~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~~gIp~~~~~~~~~~r~~~~~~ 156 (287)
T 3nrb_A 91 VVIMVSKFDHCL--------------GDLLYRHRLGELDMEVVGIISNHPREALSVSLVGDIPFHYLPVTPATKAAQESQ 156 (287)
T ss_dssp EEEEECSCCHHH--------------HHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCCTTSCEEECCCCGGGHHHHHHH
T ss_pred EEEEEeCCCcCH--------------HHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHHcCCCEEEEeccCcchhhHHHH
Confidence 667877777633 44555544321 2444555666655 6666777888876533211111 112
Q ss_pred HHHHHHHccccCCEEEEEeCCcccCCHHHHHHH
Q 022555 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (295)
Q Consensus 127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~l 159 (295)
+...++.. +.| ++++.+=+-.++++.++..
T Consensus 157 ~~~~l~~~--~~D-livlagym~il~~~~l~~~ 186 (287)
T 3nrb_A 157 IKNIVTQS--QAD-LIVLARYMQILSDDLSAFL 186 (287)
T ss_dssp HHHHHHHH--TCS-EEEESSCCSCCCHHHHHHH
T ss_pred HHHHHHHh--CCC-EEEhhhhhhhcCHHHHhhc
Confidence 44555554 345 5666666667887666643
Done!