BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022556
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 138/232 (59%), Gaps = 12/232 (5%)
Query: 37 EIPVISLAGIDDVGGKRAEIC-KKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFAL 95
++P I L I+ K E C +++ +A DWG+ +++HG+ A L+ + + EFF+L
Sbjct: 45 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 104
Query: 96 PPEEKLKF--DMSGGKKGGF--IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPE 151
EEK K+ D + GK G+ ++++ G++ +W + + ++P++ RD S WP P
Sbjct: 105 SVEEKEKYANDQATGKIQGYGSKLANNASGQL--EWEDYFFHLAYPEEKRDLSIWPKTPS 162
Query: 152 GWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQP 208
++E T EY+ L +A K+ + LS +GLE + L K +++ ++ +NYYPKCPQP
Sbjct: 163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 222
Query: 209 DLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 260
+L LG++ HTD +T +L + V GLQ + GK W+T + + + V+++GD
Sbjct: 223 ELALGVEAHTDVSALTFILHNMVPGLQLFYE-GK-WVTAKCVPDSIVMHIGD 272
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 138/232 (59%), Gaps = 12/232 (5%)
Query: 37 EIPVISLAGIDDVGGKRAEIC-KKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFAL 95
++P I L I+ K E C +++ +A DWG+ +++HG+ A L+ + + EFF+L
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 96 PPEEKLKF--DMSGGKKGGF--IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPE 151
EEK K+ D + GK G+ ++++ G++ +W + + ++P++ RD S WP P
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQL--EWEDYFFHLAYPEEKRDLSIWPKTPS 163
Query: 152 GWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQP 208
++E T EY+ L +A K+ + LS +GLE + L K +++ ++ +NYYPKCPQP
Sbjct: 164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 223
Query: 209 DLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 260
+L LG++ HTD +T +L + V GLQ + GK W+T + + + V+++GD
Sbjct: 224 ELALGVEAHTDVSALTFILHNMVPGLQLFYE-GK-WVTAKCVPDSIVMHIGD 273
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 136/232 (58%), Gaps = 12/232 (5%)
Query: 37 EIPVISLAGIDDVGGKRAEIC-KKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFAL 95
++P I L I+ K E C +++ +A DWG+ +++HG+ A L + + EFF+L
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSL 105
Query: 96 PPEEKLKF--DMSGGKKGGF--IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPE 151
EEK K+ D + GK G+ ++++ G++ +W + + ++P++ RD S WP P
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQL--EWEDYFFHLAYPEEKRDLSIWPKTPS 163
Query: 152 GWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQP 208
++E T EY+ L +A K+ + LS +GLE + L K +++ ++ +NYYPKCPQP
Sbjct: 164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQP 223
Query: 209 DLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 260
+L LG++ HTD +T +L + V GLQ + GK W+T + + + V ++GD
Sbjct: 224 ELALGVEAHTDVSALTFILHNXVPGLQLFYE-GK-WVTAKCVPDSIVXHIGD 273
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 17/232 (7%)
Query: 38 IPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPP 97
P+ISL ++ G +RA + I +ACE+WG F++V+HG+ ++ + + +
Sbjct: 4 FPIISLDKVN--GVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 98 EEKLKFDMSGGKKGGFIVSSHLQGEVV-KDWREIVTYFSFPKQSRDYSRWPDKPEGWMEV 156
E++ K ++ G +Q EV DW T+F + S PD E + EV
Sbjct: 62 EQRFKELVASKALEG------VQAEVTDXDWES--TFFLKHLPISNISEVPDLDEEYREV 113
Query: 157 TKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVNYYPKCPQPDLTLG 213
++++ +L +A +LL++L E +GLEK L A + V+ YP CP+PDL G
Sbjct: 114 XRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKG 173
Query: 214 LKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGDHGHV 264
L+ HTD G I LL Q D+V GLQ KD WI V P + VVNLGD V
Sbjct: 174 LRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPXRHSIVVNLGDQLEV 223
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 11/215 (5%)
Query: 55 EICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFI 114
+++ + E +G + D+ +D I A FFALP E K ++ G G+I
Sbjct: 21 RFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI 80
Query: 115 ---------VSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLM 165
+ E R++ F D + WP + + + L
Sbjct: 81 PFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXAD-NVWPAEIPAFKHDVSWLYNSLD 139
Query: 166 GVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITL 225
G K+LE ++ + LE++ D + + + +YP P+ + H D TITL
Sbjct: 140 GXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITL 199
Query: 226 LLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 260
LL + GGL+ +G+ W+ + P G V+N+GD
Sbjct: 200 LLGAEEGGLEVLDRDGQ-WLPINPPPGCLVINIGD 233
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 106/259 (40%), Gaps = 47/259 (18%)
Query: 37 EIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEF-FAL 95
+I V L G D R + ++I A D G F V+HG++ + +S T+ EF ++
Sbjct: 11 KIDVSPLFGDDQAAKMR--VAQQIDAASRDTGFFYAVNHGINVQRLSQKTK---EFHMSI 65
Query: 96 PPEEKLKFDMSGGKK-------GGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSR--- 145
PEEK + K G+ +S + V E Y + P + D+ R
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAV-----ESFCYLN-PNFTPDHPRIQA 119
Query: 146 ---------WPD--KPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACV--D 192
WPD K G+ + ++Y + G++ LL+ + A+G E+ + D
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 193 MDQKIVVNYYPKC-PQPDLT---------LGLKRHTDPGTITLLLQDQVGGLQATKDNGK 242
+V+ YP P P+ L + H D IT+L Q V LQ G
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG- 238
Query: 243 TWITVQPIEGAFVVNLGDH 261
+ ++ + +++N G +
Sbjct: 239 -YQDIEADDTGYLINCGSY 256
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 106/259 (40%), Gaps = 47/259 (18%)
Query: 37 EIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEF-FAL 95
+I V L G D R + ++I A D G F V+HG++ + +S T+ EF ++
Sbjct: 11 KIDVSPLFGDDQAAKMR--VAQQIDAASRDTGFFYAVNHGINVQRLSQKTK---EFHMSI 65
Query: 96 PPEEKLKFDMSGGKK-------GGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSR--- 145
PEEK + K G+ +S + V E Y + P + D+ R
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAV-----ESFCYLN-PNFTPDHPRIQA 119
Query: 146 ---------WPD--KPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACV--D 192
WPD K G+ + ++Y + G++ LL+ + A+G E+ + D
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 193 MDQKIVVNYYPKC-PQPDLT---------LGLKRHTDPGTITLLLQDQVGGLQATKDNGK 242
+V+ YP P P+ L + H D IT+L Q V LQ G
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG- 238
Query: 243 TWITVQPIEGAFVVNLGDH 261
+ ++ + +++N G +
Sbjct: 239 -YQDIEADDTGYLINCGSY 256
>pdb|1VRM|A Chain A, Crystal Structure Of The Apbe Protein (Tm1553) From
Thermotoga Maritima Msb8 At 1.58 A Resolution
Length = 325
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 123 VVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKE-YSDKLMGVACKLLEVLSEAM 179
+++D + I FSF + + D P W+EV +E YS L+ AC E+ A
Sbjct: 48 ILEDXKRITYKFSFTDERSVVKKINDHPNEWVEVDEETYS--LIKAACAFAELTDGAF 103
>pdb|2FBT|A Chain A, Wrn Exonuclease
pdb|2FBV|A Chain A, Wrn Exonuclease, Mn Complex
pdb|2FBX|A Chain A, Wrn Exonuclease, Mg Complex
pdb|2FBY|A Chain A, Wrn Exonuclease, Eu Complex
pdb|2FC0|A Chain A, Wrn Exonuclease, Mn Dgmp Complex
Length = 205
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 54 AEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGF 113
++ K ++ E W + +V H + +L+ D + + + P E K + GF
Sbjct: 131 TDVANKKLKCTETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGF 190
Query: 114 IVSSHLQ 120
I+ +L+
Sbjct: 191 IIYRNLE 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,915,574
Number of Sequences: 62578
Number of extensions: 373655
Number of successful extensions: 930
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 13
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)