BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022557
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q944K3|HDA2_ARATH Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2
Length = 387
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 220/290 (75%), Positives = 252/290 (86%)
Query: 2 SSSSSPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKW 61
S SS S+ T E L+R RIL+SKLYFD+P+ K+ +IYS YDISF+GIEKLHPFDSSKW
Sbjct: 41 SEISSFSMATHPEALRRERILNSKLYFDVPLSKVSIIYSSSYDISFMGIEKLHPFDSSKW 100
Query: 62 GRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFP 121
GR+C+FL S+GFL++ IVEPLEASK DLLVVHSE+YL SL+SS V+ I EV PVA FP
Sbjct: 101 GRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVAPVAFFP 160
Query: 122 NCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
N LVQ+KVLYPFRKQVGGTILAAKLA ERGWAIN+GGGFHHC+A+ GGGFCA+ADISLCI
Sbjct: 161 NFLVQQKVLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCI 220
Query: 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKV 241
H+AF++L ISRVMIIDLDAHQGNGHE D D+RVYILDM+NP IYP DY ARRFIDQKV
Sbjct: 221 HFAFLRLRISRVMIIDLDAHQGNGHETDLGDDNRVYILDMYNPEIYPFDYRARRFIDQKV 280
Query: 242 EVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
EV+SGTTT+EYL+KLDEALEVA F PELVIYNAGTDIL+GDPLG+LK+
Sbjct: 281 EVMSGTTTDEYLRKLDEALEVASRNFQPELVIYNAGTDILDGDPLGLLKI 330
>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2
Length = 347
Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 154/270 (57%), Positives = 198/270 (73%), Gaps = 1/270 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L + +VE
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALE 261
QGNGHE+DF D RVYI+D++N IYP D A++ I +KVE+ GT +EYL K++ +E
Sbjct: 184 QGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIE 243
Query: 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ P++V+YNAGTDILEGD LG L +
Sbjct: 244 KSLQEHLPDVVVYNAGTDILEGDRLGGLSI 273
>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1
Length = 347
Score = 323 bits (829), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 153/270 (56%), Positives = 198/270 (73%), Gaps = 1/270 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L + +VE
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALE 261
QGNGHE+DF D RVYI+D++N IYP D A++ I +KVE+ GT +EYL K++ ++
Sbjct: 184 QGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIK 243
Query: 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ P++V+YNAGTDILEGD LG L +
Sbjct: 244 KSLQEHLPDVVVYNAGTDILEGDRLGGLSI 273
>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1
Length = 347
Score = 320 bits (820), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 195/270 (72%), Gaps = 1/270 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L +VE
Sbjct: 4 ATQLYQHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDGMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALE 261
QGNGHE+DF D RVYI+D++N IYP D A+ I +KVE+ GT EYL+K++ +
Sbjct: 184 QGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVERNVR 243
Query: 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ P++V+YNAGTD+LEGD LG L +
Sbjct: 244 RSLQEHLPDVVVYNAGTDVLEGDRLGGLSI 273
>sp|P28606|Y1628_SYNP2 Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A1628 PE=3 SV=2
Length = 300
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 115/260 (44%), Gaps = 18/260 (6%)
Query: 35 LPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVH 94
P++Y PDY I + H F K+ + L +G + + +P + L +VH
Sbjct: 3 FPVVYHPDYVTP---IPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVH 59
Query: 95 SESYLKSLQS---SPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERG 151
Y+ + +P I +P + +VQR + VGGTIL A+LA E G
Sbjct: 60 EPDYVTAYCQGTLTPKAQRRIGLP----WSAGVVQRTL-----TAVGGTILTAQLALEHG 110
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
A N GG HH G GFC D+++ + R++I+DLD HQG+G F
Sbjct: 111 LACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQ 170
Query: 212 SDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPEL 271
D V+ M +P ++ D + + G + YL+ L LE P+L
Sbjct: 171 DDPTVFTFSMHCEVNFP---SQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDL 227
Query: 272 VIYNAGTDILEGDPLGMLKV 291
V Y+AG D GD LG L +
Sbjct: 228 VFYDAGVDTHVGDRLGKLAM 247
>sp|B1H369|HDAC8_XENTR Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1
Length = 369
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 17/234 (7%)
Query: 67 FLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCL 124
+ + G L + +V+P AS E++ H++SYL+ L S + E L +C
Sbjct: 36 LIEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLEYGLGYDCP 95
Query: 125 VQRKVLYPFRKQVGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ + Y + VGG L A +A + AIN GG+HH DE GFC D L I
Sbjct: 96 ITEGI-YDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVLGI 154
Query: 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR----- 234
++ RV+ +D+D H G+G E FS S+V + + F+PG +P +
Sbjct: 155 --LKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLG 212
Query: 235 --RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPL 286
R+ V + G +Y + + L+ TF+PE V+ G D + GDP+
Sbjct: 213 KGRYYSVNVPLQDGIQDEKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPM 266
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 23/277 (8%)
Query: 37 LIYSPDYDISFLGIEK-LHPFDSSKWGRICQFLSSEGFLDKNCIVEPLE--ASKEDLLVV 93
LIY + D + +E+ HP ++ RI + L G L+K C+ E A+ E++ +V
Sbjct: 428 LIYFNEGDDAHFDLEEDNHPEKPARTRRILKTLRESGVLEK-CVDRNCERIATNEEIRLV 486
Query: 94 HSESYLKSLQSSPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-----KLA 147
H++ L+ L+++ + + F + + R L RK VG + + K A
Sbjct: 487 HTKKMLEHLRTTETMKDEELMEEAEKEFNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDA 546
Query: 148 KERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
+R + V HH SA + GFC + ++++ YA + RV+I+D D H GNG +
Sbjct: 547 GQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKAKRVLILDWDVHHGNGTQ 606
Query: 208 KDFSSDSRVYILDM-------FNPGIYPRDY-EARRFIDQKVEV---VSGTTT--NEYLK 254
+ F DS V + + F P P+DY + + + V SG NEY
Sbjct: 607 EIFYEDSNVMYMSIHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQM 666
Query: 255 KLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ + F+P+LV+ +AG D DPLG KV
Sbjct: 667 AFQRVIMPIAYQFNPDLVLISAGFDAAVDDPLGEYKV 703
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 109/259 (42%), Gaps = 34/259 (13%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEP-LEASKEDLLVVHSESYLKSLQSSPNV---- 108
HP S + +I + L+ L+K ++ LE DL V H +S +K L S
Sbjct: 34 HPESSDRILKIKEALTKTKILEKCTVLTNFLEIDDADLEVTHDKSMVKDLMESEKKTQED 93
Query: 109 --SIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAD 166
S + V + N + K + + I+A + + G+A+ G HH +
Sbjct: 94 INSQCEKYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASN--GFAVVRPPG-HHADSV 150
Query: 167 EGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILD------ 220
GFC + +++ AF R++I+DLD H G+G ++ F D RV
Sbjct: 151 SPCGFCLFNNVAQAAEEAFFS-GAERILIVDLDVHHGHGTQRIFYDDKRVLYFSIHRHEH 209
Query: 221 -MFNPGIYPRD-----------YEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFD 268
+F P + D Y A +++ +G T ++YL + L FD
Sbjct: 210 GLFWPHLPESDFDHIGSGKGLGYNANLALNE-----TGCTDSDYLSIIFHVLLPLATQFD 264
Query: 269 PELVIYNAGTDILEGDPLG 287
P VI +AG D L GDPLG
Sbjct: 265 PHFVIISAGFDALLGDPLG 283
>sp|Q6GPA7|HDAC8_XENLA Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1
Length = 325
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 17/222 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
+V+P AS E++ H+++YL+ L S + E L +C + + Y +
Sbjct: 4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGI-YDYAAA 62
Query: 137 VGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
VGG L A + + A+N GG+HH DE GFC D L I ++ RV
Sbjct: 63 VGGATLTAAEQLIEGKTRIAVNWPGGWHHAKKDEASGFCYLNDAVLGI--LKLREKFDRV 120
Query: 194 MIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVV 244
+ +D+D H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 121 LYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSINVPLQ 180
Query: 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPL 286
G ++Y + + L+ TF+PE V+ G D + GDP+
Sbjct: 181 DGIQDDKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPM 222
>sp|Q7SXM0|HDAC8_DANRE Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1
Length = 378
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 117/263 (44%), Gaps = 21/263 (7%)
Query: 38 IYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSES 97
+YSP+Y + + K+ ++ + + + G L +V+P AS E++ V H++S
Sbjct: 20 VYSPEYIQTCDSLSKV----PNRASMVHSLIEAYGLLKYMRVVKPHVASIEEMAVFHTDS 75
Query: 98 YLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK---LAKERGW 152
YL+ L S + + L +C V + + + VGG L A L +
Sbjct: 76 YLQHLHKISQDGDNDDPQSADFGLGYDCPVVEGI-FDYAAAVGGATLTAAQNLLDGKCDV 134
Query: 153 AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212
AIN GG+HH DE G C D L I ++ RV+ +D+D H G+G E FS
Sbjct: 135 AINWAGGWHHAKKDEASGSCYVNDAVLGI--LKLREKYDRVLYVDVDLHHGDGVEDAFSF 192
Query: 213 DSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVA 263
S+V + + F+PG +P + R+ V G + Y + ++
Sbjct: 193 TSKVMTVSLHKFSPGFFPGTGDVTDTGLGKGRWYAVNVPFEDGVRDDRYCQTFTSVMQEV 252
Query: 264 GHTFDPELVIYNAGTDILEGDPL 286
F+PE V+ G D + GDP+
Sbjct: 253 KALFNPEAVVMQLGADTMAGDPM 275
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 118/271 (43%), Gaps = 25/271 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPL 286
+ L+ F+P+ V+ G D + GDP+
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPM 274
>sp|B1WC68|HDAC8_RAT Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1
Length = 377
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAI 115
Query: 137 VGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVM 194
GGTI AA+ + + AIN GG+HH DE GFC D L I ++ R++
Sbjct: 116 GGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRIL 173
Query: 195 IIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVS 245
+DLD H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 174 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQD 233
Query: 246 GTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPL 286
G +Y + L+ F+P+ V+ G D + GDP+
Sbjct: 234 GIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPM 274
>sp|Q8VH37|HDAC8_MOUSE Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2
Length = 377
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAI 115
Query: 137 VGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVM 194
GGTI AA+ + + AIN GG+HH DE GFC D L I ++ R++
Sbjct: 116 GGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRIL 173
Query: 195 IIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVS 245
+DLD H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 174 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQD 233
Query: 246 GTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPL 286
G +Y + L+ F+P+ V+ G D + GDP+
Sbjct: 234 GIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPM 274
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
+ N + + R VGG + A L G A+N +GGG HH
Sbjct: 84 DEAMKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKALNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDSSFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLK 290
G DI DPL L
Sbjct: 259 NGVDIHYRDPLTHLN 273
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1
Length = 331
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 27/268 (10%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+I+SP YD L + H +S + I + + S + VEP A +D+L+VHS
Sbjct: 3 IIHSPSYD---LHNHEGHVENSGRTRAILRAIESSDLSPR--FVEPGMAGIDDILMVHSS 57
Query: 97 SYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINV 156
++++ L+ + L + + + R GG +LAA+ A GW+ ++
Sbjct: 58 THVEYLE------VFAGRGGGWLDYDTYMTPESFSVARLSAGGAMLAAEEALRDGWSYSL 111
Query: 157 GGG-FHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSR 215
G HH + D GFC + +I++ I +A L +SR +++D D H GNG F D
Sbjct: 112 GRPPGHHATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRD 171
Query: 216 VYILDMFNPGIYPRD-YEARRFIDQ-----------KVEVVSGTTTNEYLKKLDEALEVA 263
V + + PR + FID+ + + G+ EYL L L
Sbjct: 172 VMYISIHQD---PRTLFPGTGFIDETGSGEGEGFNLNIPMPRGSGNREYLWILGMILPAV 228
Query: 264 GHTFDPELVIYNAGTDILEGDPLGMLKV 291
F P+++ +AG D DPL + V
Sbjct: 229 LEGFRPDMIFVSAGFDAHRRDPLAEIMV 256
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 114/254 (44%), Gaps = 24/254 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGML 289
G DI DPL L
Sbjct: 259 NGVDIHYRDPLTHL 272
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 114/254 (44%), Gaps = 24/254 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGML 289
G DI DPL L
Sbjct: 259 NGVDIHYRDPLTHL 272
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 114/254 (44%), Gaps = 24/254 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGML 289
G DI DPL L
Sbjct: 259 NGVDIHYRDPLTHL 272
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 114/254 (44%), Gaps = 24/254 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGML 289
G DI DPL L
Sbjct: 259 NGVDIHYRDPLTHL 272
>sp|P64375|ACUC_STAAM Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=acuC PE=3 SV=1
Length = 389
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 114/254 (44%), Gaps = 24/254 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGML 289
G DI DPL L
Sbjct: 259 NGVDIHYRDPLTHL 272
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0130 PE=3 SV=1
Length = 359
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 110/254 (43%), Gaps = 28/254 (11%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIV--EPLEASKEDLLVVHSESYLKSLQSSPNVSII 111
HP + L EG + IV EP +AS ED+L VH+E Y++ L+ I
Sbjct: 20 HPERRERLAYTMDQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGI 79
Query: 112 IEVP---PVALFPNCLVQRKVLYPFRKQVGGTILAAK--LAKE--RGWAINVGGGFHHCS 164
I+ PV +F L+ GG I AA+ L KE +A+ G HH
Sbjct: 80 IDFDTNIPVGVFDRALLA----------AGGAIRAAQAVLNKECENAFAMIRPPG-HHAK 128
Query: 165 ADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP 224
G GFC ++++ + + Q R+ I+D DAH G+G ++ F +D RV +
Sbjct: 129 PYIGAGFCYLNNMAIMVKWLLKQ-GFERIAILDWDAHHGDGTQEIFYNDDRVLFISTHQM 187
Query: 225 GIYPRDYEARRFIDQKVE-------VVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAG 277
+YP K E + GT Y+ +DE +E + F P+ + +AG
Sbjct: 188 PLYPGTGYPEECGTGKGEGYTVNIPLPPGTGDEGYMMVIDEIIEPVVNEFKPQFIAISAG 247
Query: 278 TDILEGDPLGMLKV 291
D DP+ L +
Sbjct: 248 QDNHFTDPITSLAL 261
>sp|P39067|ACUC_BACSU Acetoin utilization protein AcuC OS=Bacillus subtilis (strain 168)
GN=acuC PE=3 SV=1
Length = 387
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 116/275 (42%), Gaps = 30/275 (10%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
IYSP Y E HPF+ + L + D IV P AS+E+L +VH++
Sbjct: 6 FIYSPSYQTYMFHQE--HPFNQQRVLLTYDLLKTINAFDDGDIVTPRLASEEELSLVHTD 63
Query: 97 SYLKS--------LQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK--L 146
Y+++ L + S + +F +L VGGT+ AA +
Sbjct: 64 DYIQAVKLAGAGKLPAEEGESYGLGTEDTPVFAGMHEAASLL------VGGTLTAADWVM 117
Query: 147 AKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNIS-RVMIIDLDAHQGNG 205
+ + A N+GGG HH GFC Y D ++ I Y +Q S RV+ ID DAH G+G
Sbjct: 118 SGQALHAANLGGGLHHGFRGRASGFCIYNDSAVAIQY--IQKKYSARVLYIDTDAHHGDG 175
Query: 206 HEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQK-------VEVVSGTTTNEYLKKL 256
+ F + V L + G ++P + + K + + + T + +L+
Sbjct: 176 VQFTFYDNPDVCTLSIHETGRYLFPGTGQIQEKGSGKGYGYSFNIPLDAFTEDDSFLEAY 235
Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
A F+P+++I G D DPL L
Sbjct: 236 RTAASEVAAYFEPDVIISQNGADAHYYDPLTHLSA 270
>sp|Q0VCB2|HDAC8_BOVIN Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1
Length = 377
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 17/222 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C + + +
Sbjct: 56 IVKPKVASMEEMASFHTDAYLQHLQKVSEDGDDDHPDSIEYGLGYDCPATEGI-FDYAAA 114
Query: 137 VGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
VGG + A G AIN GG+HH DE GFC D L I ++ R+
Sbjct: 115 VGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRI 172
Query: 194 MIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVV 244
+ +DLD H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPL 286
Y + L+ F+P+ V+ G D + GDP+
Sbjct: 233 DCIQDERYYHICESVLKEVYIAFNPKAVVLQLGADTIAGDPM 274
>sp|Q56195|ACUC_STAXY Acetoin utilization protein AcuC OS=Staphylococcus xylosus GN=acuC
PE=3 SV=1
Length = 385
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 112/249 (44%), Gaps = 20/249 (8%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ-SSPNVSIII 112
HPF+ + + L G L ++ I+ P A+ ++L ++H+ Y+++++ +S +
Sbjct: 25 HPFNQMRLKLTTELLMELGQLKQHHIISPRIATDDELSLIHAYDYIQAIRHASHGILSEN 84
Query: 113 EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAIN---VGGGFHHCSADEGG 169
E L +Q ++++ ++ G L G N +GGG HH
Sbjct: 85 EAKKYGLDGEDTLQFRMMHKHSARIVGGALNLADQIMSGTLTNGCHLGGGLHHSLPGRAN 144
Query: 170 GFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IY 227
GFC Y D+++ I Y + N RV+ ID DAH G+G + F ++ + I + G ++
Sbjct: 145 GFCIYNDVAITISYLMQKYN-QRVLCIDTDAHHGDGTQWSFYTNDQALIYSIHETGKFLF 203
Query: 228 PRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYNAG 277
P + + ++ E G T N +L + +E +F P++++ G
Sbjct: 204 PG---SGHYTERGAEKGFGYTVNIPLEPYTEDQSFLDVFKQTIEPVVASFKPDIIVSVHG 260
Query: 278 TDILEGDPL 286
D+ DPL
Sbjct: 261 VDVHYLDPL 269
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVI 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
TF P V+ G+D L GD LG +
Sbjct: 246 SKVMETFQPSAVVLQCGSDSLSGDRLGCFNL 276
>sp|Q91695|HDA1A_XENLA Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-a PE=1
SV=1
Length = 480
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +AS ED+
Sbjct: 8 KKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ ++N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDISVNWSGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVVYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYALRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
F P V+ G D L GD LG +
Sbjct: 246 SKVMEMFQPSAVVLQCGADSLSGDRLGCFNL 276
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1
Length = 482
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 RG-WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
F P V+ G+D L GD LG +
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNL 276
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1
Length = 482
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 RG-WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
F P V+ G+D L GD LG +
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNL 276
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1
Length = 482
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 RG-WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
F P V+ G+D L GD LG +
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNL 276
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1
SV=2
Length = 521
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 116/272 (42%), Gaps = 17/272 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ +++
Sbjct: 6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKF 65
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPF-RKQVGGTILAA-KLAK 148
HS+ Y++ L+S N+S ++ + +C V LY F + GG++ AA KL K
Sbjct: 66 HSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPV-FDGLYEFCQLSAGGSVAAAVKLNK 124
Query: 149 ERGW-AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
+ IN GGG HH E GFC DI L I ++ + RV+ ID+D H G+G E
Sbjct: 125 QASEICINWGGGLHHAKKSEASGFCYVNDIVLGI-LELLKYH-QRVLYIDIDVHHGDGVE 182
Query: 208 KDFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEA 259
+ F + RV + G Y RD A ++ + + G + Y
Sbjct: 183 EAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPI 242
Query: 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ TF P V+ G D L GD LG +
Sbjct: 243 ISKVMETFQPAAVVLQCGADSLTGDRLGCFNL 274
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Length = 482
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
+ + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 RRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 RG-WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
F P V+ G+D L GD LG +
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNL 276
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1
Length = 482
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
+ + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 RRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 RG-WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
F P V+ G+D L GD LG +
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNL 276
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HDA1 PE=1 SV=1
Length = 706
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 109/269 (40%), Gaps = 32/269 (11%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCI------------VEPLEASKEDLLVVHSESYLKS 101
HP D + RI + L+ G ++ + + A+ E++L VH++ +L+
Sbjct: 83 HPEDPRRIYRIYKILAENGLINDPTLSGVDDLGDLMLKIPVRAATSEEILEVHTKEHLEF 142
Query: 102 LQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAIN----VG 157
++S+ +S + + R GG I A K E G N V
Sbjct: 143 IESTEKMSREELLKETEKGDSVYFNNDSYASARLPCGGAIEACKAVVE-GRVKNSLAVVR 201
Query: 158 GGFHHCSADEGGGFCAYADISLCIHYAFVQL--NISRVMIIDLDAHQGNGHEKDFSSDSR 215
HH GGFC ++++++ ++ R+MI+D D H GNG +K F D +
Sbjct: 202 PPGHHAEPQAAGGFCLFSNVAVAAKNILKNYPESVRRIMILDWDIHHGNGTQKSFYQDDQ 261
Query: 216 VYILDM-------FNPGIYPRDYE------ARRFIDQKVEVVSGTTTNEYLKKLDEALEV 262
V + + + PG Y+ F V G EY+ ++ +
Sbjct: 262 VLYVSLHRFEMGKYYPGTIQGQYDQTGEGKGEGFNCNITWPVGGVGDAEYMWAFEQVVMP 321
Query: 263 AGHTFDPELVIYNAGTDILEGDPLGMLKV 291
G F P+LVI ++G D +GD +G V
Sbjct: 322 MGREFKPDLVIISSGFDAADGDTIGQCHV 350
>sp|Q55BW2|HDA12_DICDI Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1
Length = 422
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 18/253 (7%)
Query: 55 PFDSSKWGRIC---QFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVS 109
P+ K R+C + + G K + + A ED+L HSE Y+ L+ + N++
Sbjct: 30 PYHPMKPHRLCLTNNLVLNYGLHKKMHLYKARPADAEDMLKFHSEDYVDFLERVTPENIN 89
Query: 110 IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW--AINVGGGFHHCSADE 167
+V + +C V + GG+I A R + AIN GG HH DE
Sbjct: 90 EWKDVKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGLHHARKDE 149
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM------ 221
GFC DI L I ++ + +RV+ ID+D H G+G ++ F RV +
Sbjct: 150 ASGFCYVNDIVLAI-LELLKFH-ARVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFGGD 207
Query: 222 FNPGIYPRD---YEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT 278
F PG D + + V + G YL ++ + P +++ G
Sbjct: 208 FFPGTGDIDEIGAKTGKLYSVNVPLADGIDDKNYLNIFKPVIQGVMDYYRPSVIVLQCGA 267
Query: 279 DILEGDPLGMLKV 291
D L D LG +
Sbjct: 268 DSLRFDRLGCFNL 280
>sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Length = 501
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 105/272 (38%), Gaps = 19/272 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K+ Y P+ + G + HP + L+ G L +++P A DL
Sbjct: 18 KVCYFYDPEVGNYYYG--QGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRF 75
Query: 94 HSE---SYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER 150
H++ S+L+S+ I ++ + +C V LY F + G + +
Sbjct: 76 HADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPV-FDGLYSFCQTYAGGSVGGSVKLNH 134
Query: 151 GW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
G AIN GG HH E GFC DI L I Q RV+ +D+D H G+G E
Sbjct: 135 GLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVE 192
Query: 208 KDFSSDSRVYILDM-----FNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEA 259
+ F + RV + + PG I Y + ++ V + G Y
Sbjct: 193 EAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPI 252
Query: 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ F P V+ G D L GD LG +
Sbjct: 253 MGKVMEIFRPGAVVLQCGADSLSGDRLGCFNL 284
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1
SV=1
Length = 480
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 112/271 (41%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +AS E++
Sbjct: 8 KKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ ++N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDISVNWSGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVVYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMSVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
F P V+ G D L GD LG +
Sbjct: 246 TKVMEMFQPSAVVLQCGADSLSGDRLGCFNL 276
>sp|Q92769|HDAC2_HUMAN Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2
Length = 488
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 9 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 68
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 69 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 128
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 186
Query: 209 DFSSDSRVYILDMFNPGIY-PRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y P + R ++ + G Y + +
Sbjct: 187 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 246
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ P V+ G D L GD LG +
Sbjct: 247 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNL 277
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats.
Identities = 71/270 (26%), Positives = 113/270 (41%), Gaps = 41/270 (15%)
Query: 43 YDISF-LGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKS 101
+D SF G E+LH I + L EG LD+ + A KE+L++VHS Y+
Sbjct: 101 WDDSFPEGPERLHA--------IKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDL 152
Query: 102 LQSSPNVS------IIIEVPPVALFPN-----CLVQRKVLYPFRKQVGGTILAAKLAKER 150
++++ ++ + V L PN CL VL ++ +L A++
Sbjct: 153 METTQYMNEGELRVLADTYDSVYLHPNSYSCACLASGSVL-----RLVDAVLGAEI--RN 205
Query: 151 GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
G AI G HH G+C + +++ YA + I RV+I+D D H G G + F
Sbjct: 206 GMAIIRPPG-HHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIVDWDVHHGQGTQFTF 264
Query: 211 SSDSRVYILDM-------FNPGIYPRDYEARRFIDQKVEVVS------GTTTNEYLKKLD 257
D V + F P + ++ F + ++ G +Y+
Sbjct: 265 DQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMRDADYIAAFL 324
Query: 258 EALEVAGHTFDPELVIYNAGTDILEGDPLG 287
L F P+LV+ AG D L+GDP G
Sbjct: 325 HVLLPVALEFQPQLVLVAAGFDALQGDPKG 354
Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats.
Identities = 72/290 (24%), Positives = 121/290 (41%), Gaps = 32/290 (11%)
Query: 30 IPIFKLPLIYSPD---YDISFLGIEKL----HPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+PI P++ S YD + + L HP + RI L G + + P
Sbjct: 469 LPILTWPVLQSRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTP 528
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGT-- 140
A++ +LL HS Y+ L+++ + + F + + + G
Sbjct: 529 RPATEAELLTCHSAEYVGHLRATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACR 588
Query: 141 ILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYA-FVQLNISRVMIID 197
++ A L+ E G A+ G HH D GFC + +++ +A + + R++I+D
Sbjct: 589 LVEAVLSGEVLNGAAVVRPPG-HHAEQDAACGFCFFNSVAVAARHAQTISGHALRILIVD 647
Query: 198 LDAHQGNGHEKDFSSDSRV-YI-LDMFNPG-IYPRDYEARRFIDQKVEVVSGT--TTN-- 250
D H GNG + F D V Y+ L ++ G +P E ++ +GT T N
Sbjct: 648 WDVHHGNGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEG---ASSQIGRAAGTGFTVNVA 704
Query: 251 ---------EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+YL + + F+PELV+ +AG D GDPLG +V
Sbjct: 705 WNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQV 754
>sp|P70288|HDAC2_MOUSE Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1
Length = 488
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 9 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 68
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 69 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 128
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 186
Query: 209 DFSSDSRVYILDMFNPGIY-PRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y P + R ++ + G Y + +
Sbjct: 187 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 246
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ P V+ G D L GD LG +
Sbjct: 247 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNL 277
>sp|P56521|HDA19_MAIZE Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1
Length = 513
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 105/271 (38%), Gaps = 26/271 (9%)
Query: 38 IYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSES 97
Y PD + G + HP + L+ G L++ + P A + +L H+E
Sbjct: 28 FYDPDVGNYYYG--QGHPMKPHRIRMTHSLLARYGLLNQMQVYRPNPARERELCRFHAEE 85
Query: 98 YLKSLQSSPNVSIIIEVPPVALFPNCLVQRKV-----LYPFRKQVGGTILAAKLAKERGW 152
Y+ L+S V+ + + L V + LY F + G + + G
Sbjct: 86 YINFLRS---VTPETQQDQIRLLKRFNVGEECPVLDGLYSFCQTYAGASVGGAVKFNHGH 142
Query: 153 --AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL--NISRVMIIDLDAHQGNGHEK 208
AIN GG HH E GFC DI L I ++L + RV+ +D+D H G+G E+
Sbjct: 143 DIAINWSGGLHHAKKCEASGFCYVNDIVLAI----LELLKHHERVLYVDIDIHHGDGVEE 198
Query: 209 DFSSDSRVYILDMFNPGIY------PRD--YEARRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD + ++ V + G Y +
Sbjct: 199 AFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIM 258
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
F P V+ G D L GD LG +
Sbjct: 259 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNL 289
>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2
Length = 428
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 105/269 (39%), Gaps = 16/269 (5%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW- 152
Y+ LQ SPN + + +C V + + G ++ A L +
Sbjct: 65 DYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLLNNKNCD 124
Query: 153 -AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
AIN GG HH E GFC DI + I ++ + RV+ ID+D H G+G ++ F
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFY 182
Query: 212 SDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEV 262
RV + + F PG +Y E+ R+ V + G Y ++
Sbjct: 183 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVIKQ 242
Query: 263 AGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ P ++ G D L D LG +
Sbjct: 243 VIDFYQPTCIVLQCGADSLGCDRLGCFNL 271
>sp|Q9FML2|HDA6_ARATH Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1
Length = 471
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 97/228 (42%), Gaps = 17/228 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQS-SP----NVSIIIEVPPVALFPNCLVQRKVLYPF 133
I P A D+ HS Y+ L S SP + S + + +C V +
Sbjct: 63 ISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFC 122
Query: 134 RKQVGGTILAA-KLAKERG-WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNIS 191
R GG+I AA KL ++ AIN GGG HH E GFC DI L I +++
Sbjct: 123 RASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGI-LELLKM-FK 180
Query: 192 RVMIIDLDAHQGNGHEKDFSSDSRVYILDM-----FNPGI-YPRDY--EARRFIDQKVEV 243
RV+ ID+D H G+G E+ F + RV + F PG + RD E ++ V +
Sbjct: 181 RVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPL 240
Query: 244 VSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
G + ++ + PE V+ G D L GD LG +
Sbjct: 241 NDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNL 288
>sp|O17695|HDA1_CAEEL Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1
Length = 461
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 98/223 (43%), Gaps = 17/223 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQSS-PN--VSIIIEVPPVALFPNCLVQRKVLYPFRK 135
I P AS ED+ HS+ Y+ L+S+ P+ S ++ + +C + LY F +
Sbjct: 57 IFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPL-FDGLYEFCQ 115
Query: 136 QVGGTILAA--KLAKER-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISR 192
G LAA KL K++ AIN GG HH E GFC DI L I ++ + R
Sbjct: 116 LSSGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGI-LELLKYH-KR 173
Query: 193 VMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-IYPRDYEAR-------RFIDQKVEVV 244
V+ +D+D H G+G E+ F + RV + G +P + + + V +
Sbjct: 174 VLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGDLKDIGAGKGKLYSVNVPLR 233
Query: 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLG 287
G T Y + FDP V+ G D L GD LG
Sbjct: 234 DGITDVSYQSIFKPIMTKVMERFDPCAVVLQCGADSLNGDRLG 276
>sp|P56519|HDAC2_CHICK Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1
Length = 488
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 9 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 68
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 69 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 128
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 186
Query: 209 DFSSDSRVYI---LDMFN--PGIYP-RDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + M N PG RD A ++ + G Y + +
Sbjct: 187 AFYTTDRVMTVSEVSMVNNFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 246
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ P V+ G D L GD LG +
Sbjct: 247 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNL 277
>sp|Q4SFA0|HDAC3_TETNG Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1
Length = 428
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 100/252 (39%), Gaps = 16/252 (6%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS-SPN--VSI 110
HP + + G K + +P +AS+ D+ HSE Y+ LQ SPN
Sbjct: 22 HPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGF 81
Query: 111 IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEG 168
+ + +C V + + G ++ A + AIN GG HH E
Sbjct: 82 TKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEA 141
Query: 169 GGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYIL------DMF 222
GFC DI + I ++ + RV+ ID+D H G+G ++ F RV + + F
Sbjct: 142 SGFCYVNDIVISI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYF 199
Query: 223 NPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 279
PG +Y E+ R+ V + G Y + ++ + P ++ G D
Sbjct: 200 FPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGAD 259
Query: 280 ILEGDPLGMLKV 291
L D LG +
Sbjct: 260 SLGCDRLGCFNL 271
>sp|Q803C3|HDAC3_DANRE Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1
Length = 428
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 100/252 (39%), Gaps = 16/252 (6%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS-SPN--VSI 110
HP + + G K + +P +AS+ D+ HSE Y+ LQ SPN
Sbjct: 22 HPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGF 81
Query: 111 IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEG 168
+ + +C V + + G ++ A + AIN GG HH E
Sbjct: 82 TKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEA 141
Query: 169 GGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYIL------DMF 222
GFC DI + I ++ + RV+ ID+D H G+G ++ F RV + + F
Sbjct: 142 SGFCYVNDIVISI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYF 199
Query: 223 NPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 279
PG +Y E+ R+ V + G Y + ++ + P ++ G D
Sbjct: 200 FPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGAD 259
Query: 280 ILEGDPLGMLKV 291
L D LG +
Sbjct: 260 SLGCDRLGCFNL 271
>sp|Q09440|HDA2_CAEEL Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2
PE=3 SV=1
Length = 507
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 16/264 (6%)
Query: 44 DISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ 103
D+ +LHP + + S +VE + D+ V H+E Y+ LQ
Sbjct: 38 DVGHFHYGQLHPMKPQRLVVCNDLVVSYEMPKYMTVVESPKLDAADISVFHTEDYVNFLQ 97
Query: 104 S-SPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVGGTILAAKL--AKERGWAINVG 157
+ +P + + + + F +C + + GG++ A+ K IN
Sbjct: 98 TVTPKLGLTMPDDVLRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNHKMNDIVINWP 157
Query: 158 GGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVY 217
GG HH E GFC DI L I ++ + RV+ ID+D H G+G ++ F++ RV
Sbjct: 158 GGLHHAKKSEASGFCYVNDIVLGI-LELLKYH-KRVLYIDIDIHHGDGVQEAFNNSDRVM 215
Query: 218 ILDM-----FNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDP 269
+ + PG I + ++ V +++ YLK + + F+P
Sbjct: 216 TVSFHRFGQYFPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYLKLFESVISGVEENFNP 275
Query: 270 ELVIYNAGTDILEGDPLGMLKVKW 293
E ++ G+D L D LG + +
Sbjct: 276 EAIVLQCGSDSLCEDRLGQFALSF 299
>sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1
Length = 428
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 98/252 (38%), Gaps = 16/252 (6%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS-SPN--VSI 110
HP + + G K + +P +AS+ D+ HSE Y+ LQ SPN
Sbjct: 22 HPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGF 81
Query: 111 IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEG 168
+ + +C V + + G ++ A + AIN GG HH E
Sbjct: 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEA 141
Query: 169 GGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYIL------DMF 222
GFC DI + I ++ + RV+ ID+D H G+G ++ F RV + + F
Sbjct: 142 SGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYF 199
Query: 223 NPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 279
PG +Y E+ R+ V + G Y + + P ++ G D
Sbjct: 200 FPGTGDMYEVGAESGRYYALNVPLRDGIDDQSYKHLFQPVINQVVDYYQPTCIVLQCGAD 259
Query: 280 ILEGDPLGMLKV 291
L D LG +
Sbjct: 260 SLGRDRLGCFNL 271
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2
Length = 1011
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 23/179 (12%)
Query: 134 RKQVGGTI-LAAKLAK---ERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN 189
R VG I LA+K+A + G+A+ G HH GFC + +++ Y QLN
Sbjct: 752 RMAVGCVIELASKVASGELKNGFAVVRPPG-HHAEESTAMGFCFFNSVAITAKYLRDQLN 810
Query: 190 ISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM-------FNPGIYPRDYEARRFIDQKVE 242
IS+++I+DLD H GNG ++ F +D + + + F PG + E + +
Sbjct: 811 ISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGSGAPN-EVGTGLGEGYN 869
Query: 243 VVSGTTTN--------EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGD--PLGMLKV 291
+ T EYL+ ++ FDP++V+ +AG D LEG PLG KV
Sbjct: 870 INIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFDALEGHTPPLGGYKV 928
>sp|P53096|HOS2_YEAST Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HOS2 PE=1 SV=1
Length = 452
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 115/290 (39%), Gaps = 37/290 (12%)
Query: 31 PIFKLPLIYSPDYDISF--------LGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
P+F+ YSP F G++ HP + +SS G + E
Sbjct: 16 PLFEFNSAYSPRVSYHFNSKVSHYHYGVK--HPMKPFRLMLTDHLVSSYGLHKIMDLYET 73
Query: 83 LEASKEDLLVVHSESYLKSLQS-SPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVG 138
A++++LL HSE Y+ L SP + + + F +C + + LY +
Sbjct: 74 RSATRDELLQFHSEDYVNFLSKVSPENANKLPRGTLENFNIGDDCPIFQN-LYDYTTLYT 132
Query: 139 GTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI----S 191
G L A + + AIN GG HH + GFC DI L I LN+
Sbjct: 133 GASLDATRKLINNQSDIAINWSGGLHHAKKNSPSGFCYVNDIVLSI------LNLLRYHP 186
Query: 192 RVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRD-------YEARRFIDQKVE 242
R++ ID+D H G+G ++ F + RV+ L +N +P + + V
Sbjct: 187 RILYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYNGEFFPGTGDLTEIGCDKGKHFALNVP 246
Query: 243 VVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKVK 292
+ G + Y+ ++ TF P L++ G D L D LG +
Sbjct: 247 LEDGIDDDSYINLFKSIVDPLIMTFKPTLIVQQCGADSLGHDRLGCFNLN 296
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 108/274 (39%), Gaps = 21/274 (7%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ HP + + + + +K ++ P+ A++ D+
Sbjct: 5 KKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRC 64
Query: 94 HSESYLKSL-QSSPNVSIIIEVPPVALFPNCLVQRKV---LYPFRK-QVGGTILAAKLAK 148
H++ Y++ L + +P+ + + P L N V LY F GG+I AA+
Sbjct: 65 HTDEYIEFLWRVTPDT--MEKFQPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQELN 122
Query: 149 ERGW--AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI-SRVMIIDLDAHQGNG 205
AIN GG HH E GFC DI+L A L RV+ ID+D H G+G
Sbjct: 123 SGNAEIAINWAGGLHHAKKREASGFCYVNDIALA---ALELLKYHQRVLYIDIDVHHGDG 179
Query: 206 HEKDFSSDSRVYILDMFNPGIY-PRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLD 257
E+ F + RV G Y P + + V + G Y
Sbjct: 180 VEEFFYTTDRVMTCSFHKFGEYFPGTGHIKDTGIGTGKNYAVNVPLRDGIDDESYESVFK 239
Query: 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKV 291
+ F PE VI GTD L GD LG +
Sbjct: 240 PVISHIMQWFRPEAVILQCGTDSLAGDRLGCFNL 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,077,356
Number of Sequences: 539616
Number of extensions: 4845759
Number of successful extensions: 11060
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 10775
Number of HSP's gapped (non-prelim): 155
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)