BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022558
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O81788|WOX13_ARATH WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana GN=WOX13 PE=2
SV=1
Length = 268
Score = 276 bits (705), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/299 (54%), Positives = 196/299 (65%), Gaps = 36/299 (12%)
Query: 1 MEWDNIREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYAT 60
MEWDN Q + + N +G + + + G MYVKVMTDEQ ETLRKQIA+Y T
Sbjct: 2 MEWDN------QLQPNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLRKQIAIYGT 55
Query: 61 ICEQLVEMHKSLSAHQDLAAAGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESI 120
ICE+LVEMHK+L+A QDLA GR+G +Y DP+M+S G HK++ARQRWTPTPVQLQILE I
Sbjct: 56 ICERLVEMHKTLTAQQDLAG-GRMGGLYADPMMSSLG-HKMTARQRWTPTPVQLQILERI 113
Query: 121 FDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSANTLHNGGG 180
FDQGTGTPSKQKIK+IT ELSQHGQI+E NVYNWFQNRRARSKRKQ S+
Sbjct: 114 FDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQHGGGSSG------- 166
Query: 181 GGAGAGAGGADSEVETEVDSLLLHDEHKTTKPENLSSAHSTSQPQH----LRNLPPTPRP 236
+SEVETEV++L +E + +PE+L + + PRP
Sbjct: 167 ------NNNGESEVETEVEAL---NEKRVVRPESLLGLPDGNSNNNGLGTTTATTTAPRP 217
Query: 237 RDDDDPMCFHTPADISSSQLHFLGVFSNNPRDDHLTGKMGGMPGSYNLYDHAEDYSMAG 295
D +CF +P SS LH L V S NPRD+HL GKM G+ SYNLYDH EDY M+G
Sbjct: 218 ED----LCFQSPE--ISSDLHLLDVLS-NPRDEHLVGKM-GLAESYNLYDHVEDYGMSG 268
>sp|Q5QMM3|WOX8_ORYSJ WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8
PE=2 SV=1
Length = 267
Score = 230 bits (586), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 112/166 (67%), Positives = 129/166 (77%), Gaps = 14/166 (8%)
Query: 1 MEWDNIREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYAT 60
MEWD + ++ + +D G+ YVKVMTDEQ+E LRKQI++YAT
Sbjct: 1 MEWDKAKASSGEAV-------------DDRGGGEGGLGYVKVMTDEQMEVLRKQISIYAT 47
Query: 61 ICEQLVEMHKSLSAHQDLAAAGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESI 120
ICEQLVEMH++L+A QD A RLGN+YCDPLM GG HKI+ARQRWTPTP+QLQILE+I
Sbjct: 48 ICEQLVEMHRALTAQQDSIAGMRLGNLYCDPLMVPGG-HKITARQRWTPTPMQLQILENI 106
Query: 121 FDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 166
FDQG GTPSKQKIK+IT ELSQHGQISETNVYNWFQNRRARSKRKQ
Sbjct: 107 FDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 152
>sp|Q9LM84|WOX14_ARATH WUSCHEL-related homeobox 14 OS=Arabidopsis thaliana GN=WOX14 PE=2
SV=1
Length = 211
Score = 181 bits (458), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 85/145 (58%), Positives = 112/145 (77%), Gaps = 1/145 (0%)
Query: 30 NNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGR-LGNIY 88
+ + NG +VMT+EQ+E LRKQIAVYA IC+QLV +H SLS++ L++ R + Y
Sbjct: 18 DREIQNGAYSGRVMTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSSGVRPMVGGY 77
Query: 89 CDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISE 148
DP+ S H+IS R RWTPT QLQILESI+D+G+GTP++++I+EI ELS+HGQI+E
Sbjct: 78 FDPMGASSSSHRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITE 137
Query: 149 TNVYNWFQNRRARSKRKQLVSSSAN 173
TNVYNWFQNRRARSKRKQ +++AN
Sbjct: 138 TNVYNWFQNRRARSKRKQPQTTTAN 162
>sp|Q9LM83|WOX10_ARATH Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana
GN=WOX10 PE=3 SV=1
Length = 197
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 98/134 (73%), Gaps = 1/134 (0%)
Query: 34 VNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMH-KSLSAHQDLAAAGRLGNIYCDPL 92
+NG +VMTDEQ+ETLRKQIA+YA +C+QLV +H S + + Y DP+
Sbjct: 6 LNGRYGSRVMTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLSSGMNPMRGEYFDPM 65
Query: 93 MTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVY 152
+ S H +S R RWTPT QLQILE+I+ +G+GTP+ ++IKEIT+ELS+HGQI E NVY
Sbjct: 66 VASSSAHGMSTRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVY 125
Query: 153 NWFQNRRARSKRKQ 166
+WFQNRRARSKRKQ
Sbjct: 126 HWFQNRRARSKRKQ 139
>sp|Q0JKK6|WOX7_ORYSJ WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. japonica GN=WOX7
PE=2 SV=2
Length = 533
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 9/86 (10%)
Query: 104 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163
+ RW P P Q++ILE+IF+ G P + +I I ++L ++GQ+ + NV+ WFQNR++RSK
Sbjct: 67 KPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSK 126
Query: 164 RKQLVSSSANTLHNGGGGGAGAGAGG 189
N L +GG G AG G GG
Sbjct: 127 ---------NKLRSGGTGRAGLGLGG 143
>sp|Q6X7J5|WOX8_ARATH WUSCHEL-related homeobox 8 OS=Arabidopsis thaliana GN=WOX8 PE=2
SV=1
Length = 325
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 104 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163
+ RW P P Q++ILESIF+ GT P +++I+ I + L ++GQI + NV+ WFQNR++R+K
Sbjct: 53 KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAK 112
Query: 164 RKQLV 168
K V
Sbjct: 113 HKLRV 117
>sp|A3BKM2|WOX13_ORYSJ WUSCHEL-related homeobox 13 OS=Oryza sativa subsp. japonica
GN=WOX13 PE=2 SV=1
Length = 306
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 9/104 (8%)
Query: 86 NIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ 145
++ P + G + R P P Q++ILE+IF+ G P + +I I ++L ++GQ
Sbjct: 116 SLKSSPFSSVGEERVPDPKPRRNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQ 175
Query: 146 ISETNVYNWFQNRRARSKRKQLVSSSANTLHNGGGGGAGAGAGG 189
+ + NV+ WFQNR++RSK N L +GG G AG G GG
Sbjct: 176 VGDANVFYWFQNRKSRSK---------NKLRSGGTGRAGLGLGG 210
>sp|A3B6V0|WOX12_ORYSJ WUSCHEL-related homeobox 12 OS=Oryza sativa subsp. japonica
GN=WOX12 PE=2 SV=2
Length = 515
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 92 LMTSG---GGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISE 148
L++SG G + RW P P Q++ILE IF+ G P + +I+ I ++L ++GQ+ +
Sbjct: 55 LLSSGCEEGTRNPEPKPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGD 114
Query: 149 TNVYNWFQNRRARSKRK 165
NV+ WFQNR++R+K K
Sbjct: 115 ANVFYWFQNRKSRTKNK 131
>sp|Q6X7J4|WOX9_ARATH WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana GN=WOX9 PE=2
SV=1
Length = 378
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 45/62 (72%)
Query: 104 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163
+ RW P P Q++ILE+IF+ G P +++I+ I +L ++GQ+ + NV+ WFQNR++RSK
Sbjct: 53 KPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 112
Query: 164 RK 165
K
Sbjct: 113 HK 114
>sp|Q6X7K0|WOX1_ARATH WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana GN=WOX1 PE=2
SV=2
Length = 350
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 101 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160
+ RW PTP QL++LE ++ QGT TPS I++IT +L ++G+I NV+ WFQN +A
Sbjct: 71 VMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKA 130
Query: 161 RSKRKQ 166
R ++K+
Sbjct: 131 RERQKR 136
>sp|Q9SIB4|WOX3_ARATH WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana GN=WOX3 PE=2
SV=1
Length = 244
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 162
A RW PTP QL ILE ++ G TP+ +I++IT L+ +G+I NV+ WFQN +AR
Sbjct: 5 ASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARD 64
Query: 163 KRK 165
++K
Sbjct: 65 RQK 67
>sp|Q5W7C3|WOX2_ORYSJ Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. japonica
GN=WOX2 PE=3 SV=1
Length = 286
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165
RW PTP QL +LE ++ G TP+ +I++IT LS +G+I NV+ WFQN +AR ++K
Sbjct: 27 RWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQK 86
>sp|A2XZR3|WOX2_ORYSI Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica
GN=WOX2 PE=3 SV=1
Length = 286
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165
RW PTP QL +LE ++ G TP+ +I++IT LS +G+I NV+ WFQN +AR ++K
Sbjct: 27 RWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQK 86
>sp|Q8W0F1|WOX9_ORYSJ WUSCHEL-related homeobox 9 OS=Oryza sativa subsp. japonica GN=WOX9
PE=2 SV=1
Length = 200
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS--- 162
RW PT Q+++L +F G TPS ++I+ I+ LS G++ NV+ WFQN +AR
Sbjct: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARERHH 73
Query: 163 -KRKQLVSSSANTLHNGGGGGAGAGAGGAD 191
K+++ +SS ++ N G A A G AD
Sbjct: 74 HKKRRRGASSPDSGSNDDDGRAAAHEGDAD 103
>sp|Q8H1D2|WOX5_ARATH WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana GN=WOX5 PE=2
SV=1
Length = 182
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165
RW PT QL+IL +F G TP+ +I++I+ ELS +G+I NV+ WFQN +AR ++K
Sbjct: 24 RWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQK 83
Query: 166 Q 166
+
Sbjct: 84 R 84
>sp|Q6X7K1|WOX2_ARATH WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana GN=WOX2 PE=2
SV=1
Length = 260
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165
RW PT Q+ +LE+++ +G TPS +I++IT L +G I NV+ WFQN +AR ++K
Sbjct: 14 RWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQK 73
Query: 166 Q 166
Q
Sbjct: 74 Q 74
>sp|Q6X7J9|WOX4_ARATH WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana GN=WOX4 PE=2
SV=1
Length = 251
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165
RW PT Q+ ILE ++ G TP+ Q+I+ IT++L ++G+I NV+ WFQN +AR ++K
Sbjct: 90 RWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQK 149
Query: 166 Q 166
Q
Sbjct: 150 Q 150
>sp|Q8LL11|WUS_PETHY Protein WUSCHEL OS=Petunia hybrida GN=WUS PE=2 SV=1
Length = 307
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 106 RWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164
RWTPT Q++IL+ ++ + G +P+ ++I+ I+ +L Q+G+I NV+ WFQN +AR ++
Sbjct: 47 RWTPTTDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQ 106
Query: 165 KQLVSSSANT 174
K+ + ++A T
Sbjct: 107 KKRLIAAATT 116
>sp|Q8LR86|WOX5_ORYSJ WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica GN=WOX5
PE=2 SV=1
Length = 313
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160
RWTPT Q+ +LE ++ QG TP+ ++I++IT L +HG I NV+ WFQN +A
Sbjct: 44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
>sp|A2WWU7|WOX5_ORYSI WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica GN=WOX5
PE=3 SV=1
Length = 313
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160
RWTPT Q+ +LE ++ QG TP+ ++I++IT L +HG I NV+ WFQN +A
Sbjct: 44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
>sp|Q9FFK0|WOX7_ARATH WUSCHEL-related homeobox 7 OS=Arabidopsis thaliana GN=WOX7 PE=2
SV=1
Length = 122
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165
RW PT Q+++L +F G TPS +I++I++ELS +G+I NV+ WFQN +AR ++K
Sbjct: 29 RWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKARERQK 88
>sp|Q6YBV1|WUS_ANTMA Protein WUSCHEL OS=Antirrhinum majus GN=WUS PE=2 SV=1
Length = 281
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 97 GGHKISARQ---RWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHGQISETNVY 152
GG RQ RWTPT Q++IL+ ++ + G +P+ ++I+ I+ +L Q+G+I NV+
Sbjct: 28 GGSSFLCRQSSTRWTPTTDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVF 87
Query: 153 NWFQNRRARSKRKQLVSS 170
WFQN +AR ++K+ ++
Sbjct: 88 YWFQNHKARERQKKRFTA 105
>sp|Q9ZVF5|WOX6_ARATH WUSCHEL-related homeobox 6 OS=Arabidopsis thaliana GN=WOX6 PE=2
SV=2
Length = 271
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 85 GNIYCDPLMTSGGGHKISARQ---------RWTPTPVQLQILESIFDQGTGTPSKQKIKE 135
GN + + S G H I R+ RW PTP Q+ LE ++ GT TP+ ++I++
Sbjct: 31 GNDHHQLITASSGEHDIDERKNNIPAAATLRWNPTPEQITTLEELYRSGTRTPTTEQIQQ 90
Query: 136 ITVELSQHGQISETNVYNWFQNRRA 160
I +L ++G+I NV+ WFQN +A
Sbjct: 91 IASKLRKYGRIEGKNVFYWFQNHKA 115
>sp|Q6S3I3|WOX3B_MAIZE WUSCHEL-related homeobox 3B OS=Zea mays GN=WOX3B PE=2 SV=1
Length = 265
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 159
RW PTP QL ILE ++ G TP+ +I++IT L+ +G+I NV+ WFQN +
Sbjct: 8 RWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHK 61
>sp|Q84VT7|WUS_SOLLC Protein WUSCHEL OS=Solanum lycopersicum GN=WUS PE=2 SV=1
Length = 272
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Query: 106 RWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK- 163
RWTPT Q++IL+ ++ + G +P+ ++I+ I+ +L Q+G+I NV+ WFQN +AR +
Sbjct: 26 RWTPTSDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQ 85
Query: 164 RKQLVSSSANTLHN 177
+K+L+++++ T +N
Sbjct: 86 KKRLIAAASATDNN 99
>sp|Q7XTV3|WOX4_ORYSJ WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. japonica GN=WOX4
PE=2 SV=2
Length = 236
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 42/61 (68%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165
RW P+ Q+++LE ++ G TP+ +I+ IT EL ++G+I NV+ WFQN +AR ++K
Sbjct: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQK 151
Query: 166 Q 166
Q
Sbjct: 152 Q 152
>sp|Q25AM2|WOX4_ORYSI WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. indica GN=WOX4
PE=3 SV=1
Length = 236
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 42/61 (68%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165
RW P+ Q+++LE ++ G TP+ +I+ IT EL ++G+I NV+ WFQN +AR ++K
Sbjct: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQK 151
Query: 166 Q 166
Q
Sbjct: 152 Q 152
>sp|Q70UV1|WOX3A_MAIZE WUSCHEL-related homeobox 3A OS=Zea mays GN=WOX3A PE=2 SV=1
Length = 262
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 159
RW PTP QL ILE ++ G TP+ +I++IT L+ +G+I NV+ WFQN +
Sbjct: 8 RWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHK 61
>sp|Q6Z3L4|WOX10_ORYSJ WUSCHEL-related homeobox 10 OS=Oryza sativa subsp. japonica
GN=WOX10 PE=2 SV=1
Length = 284
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 95 SGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNW 154
SGGG AR RW P P Q+ ILESIF+ G P+K + I L + G + + NV+ W
Sbjct: 34 SGGGEP--ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYW 91
Query: 155 FQNRR 159
FQNRR
Sbjct: 92 FQNRR 96
>sp|A2YST1|WOX10_ORYSI WUSCHEL-related homeobox 10 OS=Oryza sativa subsp. indica GN=WOX10
PE=2 SV=1
Length = 284
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 95 SGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNW 154
SGGG AR RW P P Q+ ILESIF+ G P+K + I L + G + + NV+ W
Sbjct: 34 SGGGEP--ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYW 91
Query: 155 FQNRR 159
FQNRR
Sbjct: 92 FQNRR 96
>sp|Q33DK1|WOX3_ORYSJ WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. japonica GN=WOX3
PE=1 SV=1
Length = 203
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 159
RW PTP QL ILE ++ G TP+ +I++IT L+ +G+I NV+ WFQN +
Sbjct: 8 RWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHK 61
>sp|A2ZH47|WOX3_ORYSI WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. indica GN=WOX3
PE=3 SV=1
Length = 203
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 159
RW PTP QL ILE ++ G TP+ +I++IT L+ +G+I NV+ WFQN +
Sbjct: 8 RWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHK 61
>sp|Q9SB92|WUS_ARATH Protein WUSCHEL OS=Arabidopsis thaliana GN=WUS PE=1 SV=2
Length = 292
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 106 RWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164
RWTPT Q++IL+ ++ + +P+ +I++IT L Q G+I NV+ WFQN +AR ++
Sbjct: 38 RWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQ 97
Query: 165 KQ 166
K+
Sbjct: 98 KK 99
>sp|Q0D3I7|WOX11_ORYSJ WUSCHEL-related homeobox 11 OS=Oryza sativa subsp. japonica
GN=WOX11 PE=2 SV=1
Length = 262
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 159
R RWTP P Q+ ILESIF+ G P K + I L + G + + NV+ WFQNRR
Sbjct: 19 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRR 75
>sp|Q8GY25|WOX12_ARATH WUSCHEL-related homeobox 12 OS=Arabidopsis thaliana GN=WOX12 PE=2
SV=1
Length = 268
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 159
R RW+P P Q+ ILESIF+ GT P K + I L + G + + NV+ WFQNRR
Sbjct: 18 VRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRR 74
>sp|Q7XM13|WOX1A_ORYSJ WUSCHEL-related homeobox 1A OS=Oryza sativa subsp. japonica
GN=WOX1A PE=2 SV=2
Length = 289
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 106 RWTPTPVQLQIL-ESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164
RWTPT Q++IL E + G +P+ ++I+ I L Q+G+I NV+ WFQN +AR ++
Sbjct: 35 RWTPTTEQIKILRELYYSCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARERQ 94
Query: 165 KQ 166
K+
Sbjct: 95 KK 96
>sp|Q33DK0|WOX1B_ORYSJ WUSCHEL-related homeobox 1B OS=Oryza sativa subsp. japonica
GN=WOX1B PE=1 SV=2
Length = 289
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 106 RWTPTPVQLQIL-ESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164
RWTPT Q++IL E + G +P+ ++I+ I L Q+G+I NV+ WFQN +AR ++
Sbjct: 35 RWTPTTEQIKILRELYYSCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARERQ 94
Query: 165 KQ 166
K+
Sbjct: 95 KK 96
>sp|Q10M29|WOX6_ORYSJ WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. japonica GN=WOX6
PE=2 SV=1
Length = 328
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 159
R RWTP P Q+ ILESIF+ G P K + I L + G + + NV+ WFQNRR
Sbjct: 39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRR 95
>sp|A2XG77|WOX6_ORYSI WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. indica GN=WOX6
PE=2 SV=1
Length = 328
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 159
R RWTP P Q+ ILESIF+ G P K + I L + G + + NV+ WFQNRR
Sbjct: 39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRR 95
>sp|Q6X7J3|WOX11_ARATH WUSCHEL-related homeobox 11 OS=Arabidopsis thaliana GN=WOX11 PE=2
SV=2
Length = 268
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%)
Query: 91 PLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETN 150
P SG R RW+P P Q+ ILESIF G P K++ I L + G + + N
Sbjct: 18 PSSASGSTSAEPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDAN 77
Query: 151 VYNWFQNRR 159
V+ WFQNRR
Sbjct: 78 VFYWFQNRR 86
>sp|P70390|SHOX2_MOUSE Short stature homeobox protein 2 OS=Mus musculus GN=Shox2 PE=2 SV=1
Length = 331
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 93 MTSGGGHKISARQ-RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNV 151
M G KI R+ R T QL LE +FD+ T P + ELSQ +SE V
Sbjct: 130 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDE-THYPDAF----MREELSQRLGLSEARV 184
Query: 152 YNWFQNRRARSKRKQLVSSSANTLHNGGGGGAGA 185
WFQNRRA+ ++++ N LH G GA +
Sbjct: 185 QVWFQNRRAKCRKQE------NQLHKGVLIGAAS 212
>sp|O60902|SHOX2_HUMAN Short stature homeobox protein 2 OS=Homo sapiens GN=SHOX2 PE=2 SV=4
Length = 331
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 93 MTSGGGHKISARQ-RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNV 151
M G KI R+ R T QL LE +FD+ T P + ELSQ +SE V
Sbjct: 130 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDE-THYPDAF----MREELSQRLGLSEARV 184
Query: 152 YNWFQNRRARSKRKQLVSSSANTLHNGGGGGAGA 185
WFQNRRA+ ++++ N LH G GA +
Sbjct: 185 QVWFQNRRAKCRKQE------NQLHKGVLIGAAS 212
>sp|Q54PU1|HBX10_DICDI Homeobox protein 10 OS=Dictyostelium discoideum GN=hbx10 PE=3 SV=1
Length = 638
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 96 GGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWF 155
G + + ++R +P QL ILE IF+ PS+Q I V L+ +S V WF
Sbjct: 295 GSLNAANKKKRQRTSPEQLAILEQIFETD-KMPSQQ----IRVRLANQLGMSSRRVQIWF 349
Query: 156 QNRRARSKR 164
QN+RA+ KR
Sbjct: 350 QNKRAKVKR 358
>sp|O35750|SHOX2_RAT Short stature homeobox protein 2 (Fragment) OS=Rattus norvegicus
GN=Shox2 PE=2 SV=2
Length = 237
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 93 MTSGGGHKISARQ-RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNV 151
M G KI R+ R T QL LE +FD+ T P + ELSQ +SE V
Sbjct: 36 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDE-THYPDA----FMREELSQRLGLSEARV 90
Query: 152 YNWFQNRRARSKRKQLVSSSANTLHNGGGGGAGA 185
WFQNRRA+ ++++ N LH G GA +
Sbjct: 91 QVWFQNRRAKCRKQE------NQLHKGVLIGAAS 118
>sp|Q06348|PRRX2_MOUSE Paired mesoderm homeobox protein 2 OS=Mus musculus GN=Prrx2 PE=2
SV=2
Length = 247
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
Query: 113 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA---RSKRKQLVS 169
QLQ LE +F++ T P ++E EL++ +SE V WFQNRRA R++R L +
Sbjct: 109 QLQALERVFER-THYP-DAFVRE---ELARRVNLSEARVQVWFQNRRAKFRRNERAMLAT 163
Query: 170 SSANTLHNGG 179
SA+ L + G
Sbjct: 164 RSASLLKSYG 173
>sp|P34161|YOX1_YEAST Homeobox protein YOX1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YOX1 PE=1 SV=2
Length = 385
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 101 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160
++ R+R + +L IL++ F++ PSK+K +EL++ ++E V WFQN+R
Sbjct: 175 LARRKRRRTSSQELSILQAEFEKCPA-PSKEK----RIELAESCHMTEKAVQIWFQNKRQ 229
Query: 161 RSKRKQLVSSSANTL 175
KR+++ +S + T+
Sbjct: 230 AVKRQRIATSKSTTI 244
>sp|Q99811|PRRX2_HUMAN Paired mesoderm homeobox protein 2 OS=Homo sapiens GN=PRRX2 PE=2
SV=2
Length = 253
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 113 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA---RSKRKQLVS 169
QLQ LE +F++ T P ++E EL++ +SE V WFQNRRA R++R L S
Sbjct: 115 QLQALERVFER-THYP-DAFVRE---ELARRVNLSEARVQVWFQNRRAKFRRNERAMLAS 169
Query: 170 SSANTLHN 177
SA+ L +
Sbjct: 170 RSASLLKS 177
>sp|Q9W769|VEX1_XENLA Homeobox protein vex1 OS=Xenopus laevis GN=vex1 PE=2 SV=1
Length = 285
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 46 EQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGRLGNIYCDPLMTSGGGHKISARQ 105
++L+T R+ + V CE+ + ++ D + CD +AR
Sbjct: 87 QELDTSRRALMV-VPACERSTDQGNKVTGTTD---TNKKAKPVCD--------EDAAARA 134
Query: 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165
R +P QL+ LE F + S +K + LS+ ++SET + WFQNRR + KR+
Sbjct: 135 RTKFSPEQLEELERSFKENRYIGSSEKRR-----LSKVLKLSETQIKTWFQNRRMKFKRQ 189
>sp|P50223|HMGX7_CHICK Homeobox protein GHOX-7 OS=Gallus gallus GN=GHOX-7 PE=2 SV=1
Length = 288
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 99 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQ--KIKEITVELSQHGQISETNVYNWFQ 156
HK + + R T QL LE F Q KQ I E E S ++ET V WFQ
Sbjct: 158 HKTNRKPRTPFTTAQLLALERKFRQ------KQYLSIAE-RAEFSSSLSLTETQVKIWFQ 210
Query: 157 NRRARSKRKQ 166
NRRA++KR Q
Sbjct: 211 NRRAKAKRLQ 220
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 98 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 157
G K R R T T QL LE F++ + P +E+ +++ + E V WFQN
Sbjct: 133 GKKKHRRNRTTFTTYQLHELERAFEK-SHYPDVYSREELATKVN----LPEVRVQVWFQN 187
Query: 158 RRARSKRKQLVSSSANTLHN 177
RRA+ +R++ + +S LH+
Sbjct: 188 RRAKWRRQEKMDTSTMKLHD 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,464,894
Number of Sequences: 539616
Number of extensions: 5273284
Number of successful extensions: 50878
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 465
Number of HSP's that attempted gapping in prelim test: 49006
Number of HSP's gapped (non-prelim): 1983
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)