Query 022558
Match_columns 295
No_of_seqs 357 out of 1612
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 07:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1p_A POU domain, class 5, tr 100.0 1.1E-39 3.9E-44 279.0 6.0 151 2-165 4-154 (155)
2 1au7_A Protein PIT-1, GHF-1; c 100.0 5E-39 1.7E-43 272.6 5.6 143 8-165 3-145 (146)
3 2xsd_C POU domain, class 3, tr 100.0 4.7E-39 1.6E-43 277.8 5.0 150 6-168 11-160 (164)
4 3d1n_I POU domain, class 6, tr 100.0 1.5E-37 5E-42 264.6 5.6 148 7-164 3-150 (151)
5 1e3o_C Octamer-binding transcr 100.0 3.2E-36 1.1E-40 258.8 6.3 151 7-165 6-159 (160)
6 2dms_A Homeobox protein OTX2; 99.8 2E-19 6.7E-24 137.0 8.8 66 100-170 5-70 (80)
7 2dmq_A LIM/homeobox protein LH 99.8 2.8E-19 9.7E-24 135.9 9.6 66 100-170 5-70 (80)
8 2cue_A Paired box protein PAX6 99.8 6.2E-19 2.1E-23 134.3 8.5 66 101-171 6-71 (80)
9 1puf_A HOX-1.7, homeobox prote 99.8 1E-18 3.5E-23 132.2 9.2 67 98-169 9-75 (77)
10 1nk2_P Homeobox protein VND; h 99.8 1.1E-18 3.6E-23 132.1 8.6 68 98-170 5-72 (77)
11 2dmu_A Homeobox protein goosec 99.8 1.1E-18 3.6E-23 129.6 7.7 62 101-167 6-67 (70)
12 1b8i_A Ultrabithorax, protein 99.8 6.9E-19 2.4E-23 134.5 6.4 72 91-167 9-80 (81)
13 2dmt_A Homeobox protein BARH-l 99.8 1.1E-18 3.8E-23 132.9 7.2 65 98-167 13-77 (80)
14 2da3_A Alpha-fetoprotein enhan 99.8 1E-18 3.4E-23 132.7 6.8 65 98-167 13-77 (80)
15 2da1_A Alpha-fetoprotein enhan 99.8 7.7E-19 2.6E-23 130.3 5.9 63 100-167 5-67 (70)
16 2da2_A Alpha-fetoprotein enhan 99.8 7.3E-19 2.5E-23 130.4 5.6 63 100-167 5-67 (70)
17 2cra_A Homeobox protein HOX-B1 99.8 6.1E-19 2.1E-23 131.0 5.1 63 100-167 5-67 (70)
18 2h1k_A IPF-1, pancreatic and d 99.8 1.4E-18 4.9E-23 126.5 6.9 60 102-166 3-62 (63)
19 1fjl_A Paired protein; DNA-bin 99.7 2E-18 6.7E-23 131.8 7.8 65 99-168 15-79 (81)
20 1zq3_P PRD-4, homeotic bicoid 99.7 2.5E-18 8.4E-23 127.2 7.9 64 102-170 2-65 (68)
21 1ahd_P Antennapedia protein mu 99.7 1.4E-18 4.9E-23 128.5 6.6 63 102-169 2-64 (68)
22 2hdd_A Protein (engrailed home 99.7 1.4E-18 4.7E-23 125.7 6.1 58 102-164 3-60 (61)
23 1ig7_A Homeotic protein MSX-1; 99.7 2.1E-18 7.2E-23 123.3 6.9 57 103-164 1-57 (58)
24 2e1o_A Homeobox protein PRH; D 99.7 2.8E-18 9.5E-23 127.4 7.8 62 101-167 6-67 (70)
25 2vi6_A Homeobox protein nanog; 99.7 6.5E-19 2.2E-23 127.8 4.2 61 101-166 2-62 (62)
26 3a01_A Homeodomain-containing 99.7 3.4E-18 1.2E-22 134.1 8.6 67 99-170 14-80 (93)
27 2da4_A Hypothetical protein DK 99.7 1.7E-18 5.8E-23 131.8 6.5 66 98-168 4-73 (80)
28 1ftt_A TTF-1 HD, thyroid trans 99.7 2.7E-18 9.1E-23 127.0 6.9 63 102-169 2-64 (68)
29 2cuf_A FLJ21616 protein; homeo 99.7 4.8E-18 1.6E-22 133.5 8.7 65 100-169 5-84 (95)
30 2l7z_A Homeobox protein HOX-A1 99.7 3.2E-18 1.1E-22 128.3 6.8 65 100-169 5-69 (73)
31 1jgg_A Segmentation protein EV 99.7 3.5E-18 1.2E-22 123.2 6.7 58 103-165 2-59 (60)
32 2kt0_A Nanog, homeobox protein 99.7 2.2E-18 7.7E-23 132.1 6.0 65 98-167 18-82 (84)
33 1yz8_P Pituitary homeobox 2; D 99.7 2.1E-18 7.2E-23 127.4 5.6 64 101-169 2-65 (68)
34 2djn_A Homeobox protein DLX-5; 99.7 1.3E-18 4.4E-23 129.3 4.1 63 100-167 5-67 (70)
35 1bw5_A ISL-1HD, insulin gene e 99.7 1.9E-18 6.5E-23 126.9 4.5 61 102-167 3-63 (66)
36 2da6_A Hepatocyte nuclear fact 99.7 1.3E-17 4.5E-22 132.9 9.3 72 99-171 3-91 (102)
37 2k40_A Homeobox expressed in E 99.7 4.7E-18 1.6E-22 125.1 5.8 61 103-168 2-62 (67)
38 3rkq_A Homeobox protein NKX-2. 99.7 6.7E-18 2.3E-22 120.2 6.3 57 102-163 2-58 (58)
39 2m0c_A Homeobox protein arista 99.7 5.4E-18 1.8E-22 127.0 6.1 64 100-168 7-70 (75)
40 2r5y_A Homeotic protein sex co 99.7 4.3E-18 1.5E-22 131.9 5.4 63 99-166 25-87 (88)
41 2hi3_A Homeodomain-only protei 99.7 1.5E-17 5E-22 124.6 8.1 62 103-169 3-65 (73)
42 3a02_A Homeobox protein arista 99.7 5.6E-18 1.9E-22 122.1 5.4 58 105-167 2-59 (60)
43 1wh5_A ZF-HD homeobox family p 99.7 6.1E-18 2.1E-22 129.3 5.3 62 98-164 13-78 (80)
44 1uhs_A HOP, homeodomain only p 99.7 1.9E-17 6.5E-22 123.6 7.7 63 103-169 2-64 (72)
45 1akh_A Protein (mating-type pr 99.7 7E-18 2.4E-22 121.8 5.1 59 100-163 3-61 (61)
46 1b72_A Protein (homeobox prote 99.7 1.2E-17 4.3E-22 131.6 6.9 64 100-168 32-95 (97)
47 2ecb_A Zinc fingers and homeob 99.7 1.9E-17 6.4E-22 129.2 7.6 58 108-170 17-74 (89)
48 2ecc_A Homeobox and leucine zi 99.7 2.1E-17 7.2E-22 125.3 7.4 60 105-169 6-65 (76)
49 3a03_A T-cell leukemia homeobo 99.7 1.6E-17 5.4E-22 118.3 6.4 54 107-165 2-55 (56)
50 1b72_B Protein (PBX1); homeodo 99.7 1.7E-17 5.9E-22 127.9 6.2 62 103-169 2-66 (87)
51 2da5_A Zinc fingers and homeob 99.7 3.4E-17 1.2E-21 123.4 7.1 61 104-169 9-69 (75)
52 1puf_B PRE-B-cell leukemia tra 99.7 3.6E-17 1.2E-21 122.2 7.0 62 103-169 2-66 (73)
53 2ly9_A Zinc fingers and homeob 99.7 2.7E-17 9.3E-22 123.2 6.2 63 101-168 5-67 (74)
54 1wh7_A ZF-HD homeobox family p 99.7 1.4E-17 4.8E-22 127.4 4.6 61 98-164 13-78 (80)
55 2dmn_A Homeobox protein TGIF2L 99.7 1.1E-16 3.6E-21 123.1 9.0 67 101-171 6-74 (83)
56 2dn0_A Zinc fingers and homeob 99.7 1.9E-17 6.4E-22 124.9 4.7 62 102-168 8-69 (76)
57 3nar_A ZHX1, zinc fingers and 99.7 2.5E-17 8.7E-22 129.7 5.3 65 99-168 22-86 (96)
58 1x2n_A Homeobox protein pknox1 99.7 1.1E-16 3.8E-21 119.6 7.8 65 100-168 5-71 (73)
59 2dmp_A Zinc fingers and homeob 99.7 8.3E-17 2.8E-21 125.2 7.2 58 108-170 19-76 (89)
60 1ic8_A Hepatocyte nuclear fact 99.7 6.2E-18 2.1E-22 149.3 0.4 136 11-164 29-193 (194)
61 1du6_A PBX1, homeobox protein 99.7 3.9E-17 1.3E-21 119.0 3.7 58 102-164 3-63 (64)
62 1lfb_A Liver transcription fac 99.6 4.2E-17 1.5E-21 129.5 2.9 71 98-169 5-92 (99)
63 1wi3_A DNA-binding protein SAT 99.6 3.1E-16 1.1E-20 115.9 6.6 61 98-162 3-63 (71)
64 1k61_A Mating-type protein alp 99.6 3.6E-16 1.2E-20 112.5 6.1 57 105-165 1-59 (60)
65 2cqx_A LAG1 longevity assuranc 99.6 1.2E-16 4.1E-21 119.7 3.6 58 103-165 9-67 (72)
66 3nau_A Zinc fingers and homeob 99.6 4.7E-16 1.6E-20 114.6 5.8 52 110-166 12-63 (66)
67 2l9r_A Homeobox protein NKX-3. 99.6 2.3E-16 8E-21 117.4 3.6 57 107-168 9-65 (69)
68 1mnm_C Protein (MAT alpha-2 tr 99.6 8.6E-16 3E-20 118.6 6.7 58 101-163 26-86 (87)
69 2e19_A Transcription factor 8; 99.6 5.7E-16 2E-20 113.5 3.8 54 106-164 7-60 (64)
70 1le8_B Mating-type protein alp 99.6 1.3E-15 4.5E-20 116.7 5.9 62 103-168 3-66 (83)
71 1x2m_A LAG1 longevity assuranc 99.6 6E-16 2.1E-20 113.6 2.7 51 111-165 9-59 (64)
72 2d5v_A Hepatocyte nuclear fact 99.5 2.2E-15 7.7E-20 129.0 4.1 63 100-167 95-157 (164)
73 3k2a_A Homeobox protein MEIS2; 99.5 1.3E-14 4.5E-19 107.1 4.8 56 108-168 4-62 (67)
74 2h8r_A Hepatocyte nuclear fact 99.5 7.1E-14 2.4E-18 125.2 8.3 64 98-162 138-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 1.7E-13 5.8E-18 101.7 5.2 46 111-161 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.3 5.1E-12 1.7E-16 98.3 7.7 60 107-170 10-71 (89)
77 1mh3_A Maltose binding-A1 home 99.2 8.7E-12 3E-16 118.2 3.0 56 103-163 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 3.4E-09 1.2E-13 69.3 1.4 23 149-171 1-23 (37)
79 2ys9_A Homeobox and leucine zi 93.4 0.066 2.3E-06 39.3 3.5 38 114-156 18-55 (70)
80 2glo_A Brinker CG9653-PA; prot 71.4 8.5 0.00029 26.0 5.3 46 106-157 3-48 (59)
81 1hlv_A CENP-B, major centromer 69.6 9.2 0.00031 29.6 5.9 51 105-163 4-54 (131)
82 3hug_A RNA polymerase sigma fa 64.2 9.9 0.00034 27.8 4.8 49 109-167 38-86 (92)
83 2elh_A CG11849-PA, LD40883P; s 63.5 11 0.00037 27.6 4.9 44 103-156 17-60 (87)
84 1jko_C HIN recombinase, DNA-in 56.5 7.6 0.00026 24.4 2.6 42 109-160 6-47 (52)
85 2o8x_A Probable RNA polymerase 55.9 12 0.00043 25.2 3.8 47 108-164 15-61 (70)
86 2x7l_M HIV REV; nuclear export 54.3 10 0.00034 30.1 3.3 36 115-169 16-51 (115)
87 1tc3_C Protein (TC3 transposas 54.1 21 0.00072 21.7 4.5 40 108-157 5-44 (51)
88 4ich_A Transcriptional regulat 53.4 2.8 9.6E-05 37.3 0.0 40 115-160 127-166 (311)
89 1p4w_A RCSB; solution structur 47.9 30 0.001 26.1 5.1 46 106-162 32-77 (99)
90 2rgt_A Fusion of LIM/homeobox 47.9 0.3 1E-05 40.8 -6.9 30 100-130 134-163 (169)
91 3mzy_A RNA polymerase sigma-H 47.4 22 0.00076 27.5 4.5 49 108-167 109-157 (164)
92 1s7o_A Hypothetical UPF0122 pr 46.7 28 0.00095 26.9 4.9 47 109-165 23-69 (113)
93 3lph_A Protein REV; helix-loop 44.4 15 0.00052 26.8 2.7 36 115-169 19-54 (72)
94 1fi6_A EH domain protein REPS1 43.4 25 0.00084 25.4 3.9 46 107-156 1-50 (92)
95 3c57_A Two component transcrip 42.5 15 0.00051 27.2 2.6 48 107-165 26-73 (95)
96 1ku3_A Sigma factor SIGA; heli 41.8 36 0.0012 23.5 4.4 50 108-163 10-59 (73)
97 1xsv_A Hypothetical UPF0122 pr 40.2 34 0.0012 26.3 4.4 48 109-166 26-73 (113)
98 1fse_A GERE; helix-turn-helix 39.2 33 0.0011 23.3 3.9 47 106-163 9-55 (74)
99 1c07_A Protein (epidermal grow 38.5 28 0.00094 25.4 3.5 46 107-156 2-51 (95)
100 2lv7_A Calcium-binding protein 37.9 68 0.0023 23.7 5.8 50 105-156 26-79 (100)
101 2jn6_A Protein CGL2762, transp 37.1 31 0.0011 25.2 3.6 42 106-156 3-45 (97)
102 2q24_A Putative TETR family tr 36.0 16 0.00054 29.2 2.0 42 112-160 19-60 (194)
103 2rnj_A Response regulator prot 35.5 33 0.0011 24.8 3.6 46 107-163 28-73 (91)
104 1or7_A Sigma-24, RNA polymeras 35.4 42 0.0014 26.9 4.5 47 109-165 141-187 (194)
105 1rp3_A RNA polymerase sigma fa 32.3 49 0.0017 27.3 4.6 47 109-165 188-234 (239)
106 1je8_A Nitrate/nitrite respons 31.8 39 0.0013 24.2 3.3 46 107-163 20-65 (82)
107 1tty_A Sigma-A, RNA polymerase 31.8 33 0.0011 24.8 2.9 50 108-163 18-67 (87)
108 2iai_A Putative transcriptiona 31.7 36 0.0012 28.0 3.6 43 112-160 34-76 (230)
109 2p7v_B Sigma-70, RNA polymeras 30.8 35 0.0012 23.2 2.8 50 108-163 5-54 (68)
110 2i10_A Putative TETR transcrip 29.0 33 0.0011 27.7 2.9 47 111-163 14-60 (202)
111 2q1z_A RPOE, ECF SIGE; ECF sig 27.4 28 0.00095 27.8 2.1 26 135-164 156-181 (184)
112 3i5g_B Myosin regulatory light 27.1 1E+02 0.0036 24.1 5.5 41 105-149 6-50 (153)
113 3dcf_A Transcriptional regulat 26.2 48 0.0017 26.4 3.3 43 112-160 35-77 (218)
114 1x3u_A Transcriptional regulat 26.0 40 0.0014 23.2 2.5 45 109-164 17-61 (79)
115 2qko_A Possible transcriptiona 25.5 26 0.00088 28.4 1.5 46 113-164 33-78 (215)
116 3ulq_B Transcriptional regulat 25.3 1.1E+02 0.0037 22.4 4.9 47 104-161 25-71 (90)
117 1iuf_A Centromere ABP1 protein 25.0 99 0.0034 24.5 5.0 52 103-157 6-59 (144)
118 3kz9_A SMCR; transcriptional r 23.7 34 0.0012 27.0 1.9 41 114-160 23-63 (206)
119 1u78_A TC3 transposase, transp 23.5 93 0.0032 23.5 4.4 41 107-157 5-45 (141)
120 2qwt_A Transcriptional regulat 22.9 49 0.0017 26.4 2.8 40 113-159 18-57 (196)
121 3f6w_A XRE-family like protein 22.8 36 0.0012 23.6 1.7 39 8-52 10-48 (83)
122 2jpc_A SSRB; DNA binding prote 22.8 39 0.0013 22.1 1.8 42 112-164 2-43 (61)
123 2hxi_A Putative transcriptiona 22.4 51 0.0017 28.1 2.9 50 105-160 25-75 (241)
124 2pmy_A RAS and EF-hand domain- 22.4 52 0.0018 23.3 2.5 47 106-156 18-68 (91)
125 2rn7_A IS629 ORFA; helix, all 22.1 1.1E+02 0.0038 22.5 4.5 46 107-156 5-52 (108)
126 4ghj_A Probable transcriptiona 21.9 41 0.0014 25.5 1.9 41 8-54 32-72 (101)
127 2ef8_A C.ECOT38IS, putative tr 21.5 43 0.0015 23.1 1.9 38 9-52 7-44 (84)
128 3ccy_A Putative TETR-family tr 21.1 63 0.0022 25.7 3.1 42 112-159 18-59 (203)
129 3eus_A DNA-binding protein; st 21.0 51 0.0017 23.4 2.2 38 9-52 11-48 (86)
130 2zcx_A SCO7815, TETR-family tr 20.8 25 0.00087 29.4 0.6 41 114-160 29-69 (231)
131 1j7q_A CAVP, calcium vector pr 20.3 1.7E+02 0.0058 19.8 4.9 45 107-155 6-59 (86)
132 3g1o_A Transcriptional regulat 20.0 70 0.0024 26.7 3.2 41 114-160 49-89 (255)
No 1
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=100.00 E-value=1.1e-39 Score=279.00 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=131.7
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcCCccCCCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhcc
Q 022558 2 EWDNIREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~g~~~s~~~i~~l~~qi~~~~~ic~~~~~~~k~ls~~~~~~sg 81 (295)
+=+.+.+|||+||++||||||++||||+|||+|+|.|||++||+++||+|+++.++|++||++.|.+.+|+.+.+...+.
T Consensus 4 d~~~~~~~l~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~ 83 (155)
T 3l1p_A 4 DMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENL 83 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccCc
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999877643322
Q ss_pred cCCCCcccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHH
Q 022558 82 GRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 161 (295)
Q Consensus 82 ~~~g~~~~~p~~~s~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK 161 (295)
... +.+.. ..+++||+|+.|+..|+..||..|.. ++||+..+|.+||..| +|++++|+|||||||+|
T Consensus 84 ~~~----~~~~~----~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k 150 (155)
T 3l1p_A 84 QEI----SKSET----LVQARKRKRTSIENRVRWSLETMFLK-SPKPSLQQITHIANQL----GLEKDVVRVWFSNRRQK 150 (155)
T ss_dssp HHS----SCC-------CCCSCCCCCCCCHHHHHHHHTTTTT-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHH
T ss_pred ccc----ccccc----cccCCCCCCcccCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHc----CCChhheeecccccccc
Confidence 211 11111 11356788999999999999999999 7999999999999999 99999999999999999
Q ss_pred HHHH
Q 022558 162 SKRK 165 (295)
Q Consensus 162 ~Kr~ 165 (295)
+||.
T Consensus 151 ~Kr~ 154 (155)
T 3l1p_A 151 GKRS 154 (155)
T ss_dssp HHC-
T ss_pred ccCC
Confidence 9974
No 2
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=100.00 E-value=5e-39 Score=272.60 Aligned_cols=143 Identities=20% Similarity=0.255 Sum_probs=123.3
Q ss_pred HHHHHHHHhhhhhhhhcCCccCCCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhcccCCCCc
Q 022558 8 EAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGRLGNI 87 (295)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~g~~~s~~~i~~l~~qi~~~~~ic~~~~~~~k~ls~~~~~~sg~~~g~~ 87 (295)
+|||+||++||||||++||||+|||+++|.+||++||+++||+|+++.+++++||++.+.+.+|+.+.+.....
T Consensus 3 ~~l~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~------ 76 (146)
T 1au7_A 3 RALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGAL------ 76 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC----------
T ss_pred cHHHHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccCc------
Confidence 78999999999999999999999999999999999999999999999999999999999999999887654311
Q ss_pred ccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 88 YCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 88 ~~~p~~~s~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
+.. ..+..+++||+|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||+
T Consensus 77 -~~~---~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 77 -YNE---KVGANERKRKRRTTISIAAKDALERHFGE-HSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----------------CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred -cCc---ccCCCCCCCCCCcCccHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 111 11133466889999999999999999999 7999999999999999 999999999999999999985
No 3
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=100.00 E-value=4.7e-39 Score=277.76 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhhhhhhhhcCCccCCCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhcccCCC
Q 022558 6 IREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGRLG 85 (295)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~g~~~s~~~i~~l~~qi~~~~~ic~~~~~~~k~ls~~~~~~sg~~~g 85 (295)
..+|||+||++||||||++||||+|||+++|.|||++||+++||+|+++.+++++||++.+.+.+|+.+.+........
T Consensus 11 ~~~~l~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~~- 89 (164)
T 2xsd_C 11 SSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTN- 89 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC--------
T ss_pred chhHHHHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCcc-
Confidence 3589999999999999999999999999999999999999999999999999999999999999999887654311100
Q ss_pred CcccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 86 NIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 86 ~~~~~p~~~s~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
.++ . ...+++||+||.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||.
T Consensus 90 ---~~~---~-~~~~~~rr~Rt~ft~~Ql~~LE~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 157 (164)
T 2xsd_C 90 ---LDK---I-AAQGRKRKKRTSIEVGVKGALESHFLK-CPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRM 157 (164)
T ss_dssp -----------------------CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBS
T ss_pred ---ccc---c-cccccCCCCceeccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhc
Confidence 111 0 123466889999999999999999999 7999999999999999 999999999999999999997
Q ss_pred hhh
Q 022558 166 QLV 168 (295)
Q Consensus 166 ~~~ 168 (295)
.+.
T Consensus 158 ~~~ 160 (164)
T 2xsd_C 158 TPA 160 (164)
T ss_dssp CC-
T ss_pred cCC
Confidence 653
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=264.58 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=128.4
Q ss_pred HHHHHHHHHhhhhhhhhcCCccCCCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhcccCCCC
Q 022558 7 REAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGRLGN 86 (295)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~g~~~s~~~i~~l~~qi~~~~~ic~~~~~~~k~ls~~~~~~sg~~~g~ 86 (295)
.||+++||++||||||++||||+|||.|+|.+||+++|+++||+|+++..++++||++.+.+.+|+.+.......... .
T Consensus 3 ~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~-~ 81 (151)
T 3d1n_I 3 MEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQ-N 81 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCST-T
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcc-c
Confidence 489999999999999999999999999999999999999999999999999999999999999999776543311111 0
Q ss_pred cccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 87 IYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 87 ~~~~p~~~s~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
..+ ...+...++||+|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++++|+|||||||+|+||
T Consensus 82 --~~~--~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 82 --LME--FVGGEPSKKRKRRTSFTPQAIEALNAYFEK-NPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp --HHH--HHCSSCCCCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred --ccc--cCCCCCCCCCCCCcccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 000 011133466789999999999999999999 8999999999999999 99999999999999999986
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=100.00 E-value=3.2e-36 Score=258.75 Aligned_cols=151 Identities=18% Similarity=0.231 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhhhhhhhcCCccCCCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhccc-CCC
Q 022558 7 REAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAG-RLG 85 (295)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~g~~~s~~~i~~l~~qi~~~~~ic~~~~~~~k~ls~~~~~~sg~-~~g 85 (295)
-+||++||++|+++|+++||+|++||.++|.|||++|++++|++|+++++++++||++.+.+++|+.+........ ..+
T Consensus 6 ~~~~~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~ 85 (160)
T 1e3o_C 6 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLS 85 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999997776432111 111
Q ss_pred C--cccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 86 N--IYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 86 ~--~~~~p~~~s~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
. ....|. . .+..++||+|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++++|+|||||||+|+|
T Consensus 86 s~~~~~~~~--~-~~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~k 157 (160)
T 1e3o_C 86 SPSALNSPG--I-EGLSRRRKKRTSIETNIRVALEKSFME-NQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEK 157 (160)
T ss_dssp ---------------------CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCCC--C-CCCCCCCcCccccCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhh
Confidence 1 111111 1 133467889999999999999999999 7999999999999999 9999999999999999999
Q ss_pred HH
Q 022558 164 RK 165 (295)
Q Consensus 164 r~ 165 (295)
|.
T Consensus 158 r~ 159 (160)
T 1e3o_C 158 RI 159 (160)
T ss_dssp SC
T ss_pred cc
Confidence 85
No 6
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=2e-19 Score=137.03 Aligned_cols=66 Identities=32% Similarity=0.534 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhhc
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 170 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~~ 170 (295)
++.+|.|+.|+.+|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+..+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAK-TRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 456889999999999999999999 7999999999999999 99999999999999999999876543
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=135.95 Aligned_cols=66 Identities=24% Similarity=0.394 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhhc
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 170 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~~ 170 (295)
...+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAI-NHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 356889999999999999999999 7999999999999999 99999999999999999999876543
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=6.2e-19 Score=134.35 Aligned_cols=66 Identities=26% Similarity=0.456 Sum_probs=61.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhhcc
Q 022558 101 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 171 (295)
Q Consensus 101 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~~~ 171 (295)
..+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||..+....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER-THYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhhhhc
Confidence 56789999999999999999999 7999999999999999 999999999999999999999877644
No 9
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.77 E-value=1e-18 Score=132.24 Aligned_cols=67 Identities=25% Similarity=0.271 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
+.+..+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLF-NMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 44567889999999999999999999 7999999999999999 9999999999999999999987653
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.76 E-value=1.1e-18 Score=132.12 Aligned_cols=68 Identities=26% Similarity=0.268 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhhc
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 170 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~~ 170 (295)
..++.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+......
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQ-QRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhcccc
Confidence 44567889999999999999999999 7999999999999999 99999999999999999999877643
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=129.63 Aligned_cols=62 Identities=31% Similarity=0.471 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 101 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 101 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
..+|.|+.|+..|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE-TKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 46789999999999999999999 7999999999999999 99999999999999999999755
No 12
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.76 E-value=6.9e-19 Score=134.54 Aligned_cols=72 Identities=29% Similarity=0.409 Sum_probs=55.9
Q ss_pred CCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 91 PLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 91 p~~~s~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
|.+...+.....+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+||..+
T Consensus 9 p~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 9 PWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHT-NHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp TTCC-----------CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CccccCCCCCCCCCCCcccCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 333333344567889999999999999999999 7999999999999999 99999999999999999998653
No 13
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=132.95 Aligned_cols=65 Identities=29% Similarity=0.348 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
..++.+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEK-QKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 34567889999999999999999999 7999999999999999 99999999999999999998654
No 14
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=132.68 Aligned_cols=65 Identities=31% Similarity=0.449 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
...+.+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLL-DSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 34567889999999999999999999 7999999999999999 99999999999999999998654
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=7.7e-19 Score=130.28 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
...+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||..+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDI-NNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHH-CSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhcc
Confidence 356889999999999999999999 7999999999999999 99999999999999999999754
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=7.3e-19 Score=130.42 Aligned_cols=63 Identities=22% Similarity=0.432 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
.+.+|.|+.|+..|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDA-NAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhccc
Confidence 456889999999999999999999 7999999999999999 99999999999999999998654
No 17
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=6.1e-19 Score=131.02 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
...+|+|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAA-NKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 356889999999999999999999 7999999999999999 99999999999999999998654
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.75 E-value=1.4e-18 Score=126.50 Aligned_cols=60 Identities=33% Similarity=0.426 Sum_probs=56.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHh
Q 022558 102 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 166 (295)
Q Consensus 102 ~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~ 166 (295)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF-NKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 5789999999999999999999 7999999999999999 9999999999999999999863
No 19
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=2e-18 Score=131.76 Aligned_cols=65 Identities=31% Similarity=0.478 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 99 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 99 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
.++.+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| ||++.+|+|||||||+|+||+...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFER-TQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhccc
Confidence 3467889999999999999999999 7999999999999999 999999999999999999998653
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=2.5e-18 Score=127.15 Aligned_cols=64 Identities=28% Similarity=0.374 Sum_probs=60.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhhc
Q 022558 102 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 170 (295)
Q Consensus 102 ~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~~ 170 (295)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ-GRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 4789999999999999999999 7999999999999999 99999999999999999999877643
No 21
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=1.4e-18 Score=128.48 Aligned_cols=63 Identities=30% Similarity=0.370 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 102 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 102 ~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
++|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF-NRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH-CSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhcccc
Confidence 4789999999999999999999 7999999999999999 9999999999999999999987643
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=1.4e-18 Score=125.68 Aligned_cols=58 Identities=26% Similarity=0.475 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 102 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 102 ~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE-NRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 4789999999999999999999 7999999999999999 99999999999999999997
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=2.1e-18 Score=123.30 Aligned_cols=57 Identities=40% Similarity=0.496 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
||+|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ-KQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999 7999999999999999 99999999999999999997
No 24
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.8e-18 Score=127.45 Aligned_cols=62 Identities=31% Similarity=0.323 Sum_probs=58.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 101 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 101 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
..+++|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET-QKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 45778999999999999999999 7999999999999999 99999999999999999999765
No 25
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=6.5e-19 Score=127.83 Aligned_cols=61 Identities=31% Similarity=0.416 Sum_probs=53.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHh
Q 022558 101 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 166 (295)
Q Consensus 101 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~ 166 (295)
+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQK-QKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 35789999999999999999999 7999999999999999 9999999999999999999863
No 26
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=3.4e-18 Score=134.05 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhhc
Q 022558 99 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 170 (295)
Q Consensus 99 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~~ 170 (295)
..+.+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+|+......
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHK-QKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHHH
Confidence 3456889999999999999999999 7999999999999999 99999999999999999999877653
No 27
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=131.83 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQGT----GTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n----~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
..++.+|.||.|+.+|+.+||.+|.. + +||+..+|.+||..| +|++.+|+|||||||+|+|+....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDN-GMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTT-TTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCC
Confidence 34567889999999999999999999 8 999999999999999 999999999999999999996544
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=2.7e-18 Score=126.95 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=59.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 102 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 102 ~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
++|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ-QKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH-SSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 4789999999999999999999 7999999999999999 9999999999999999999987654
No 29
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=4.8e-18 Score=133.52 Aligned_cols=65 Identities=31% Similarity=0.518 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCC---------------CccchhhhhhhhhhHHHHH
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ---------------ISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~---------------Ls~~~V~vWFQNRRaK~Kr 164 (295)
.+.+|.|+.|++.|+.+||.+|.. ++||+..+|++||..| + |++.+|+|||||||+|+|+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~-~~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNE-NQYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999 8999999999999999 8 9999999999999999999
Q ss_pred Hhhhh
Q 022558 165 KQLVS 169 (295)
Q Consensus 165 ~~~~~ 169 (295)
+....
T Consensus 80 ~~~~~ 84 (95)
T 2cuf_A 80 RANIA 84 (95)
T ss_dssp HHHCC
T ss_pred Hhhcc
Confidence 98864
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.73 E-value=3.2e-18 Score=128.32 Aligned_cols=65 Identities=31% Similarity=0.365 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
...+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYAT-NKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHH-TSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-CCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhccc
Confidence 356889999999999999999999 7999999999999999 9999999999999999999976543
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=3.5e-18 Score=123.18 Aligned_cols=58 Identities=34% Similarity=0.472 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
||.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|++||||||+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK-ENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 678999999999999999999 7999999999999999 999999999999999999985
No 32
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=132.10 Aligned_cols=65 Identities=31% Similarity=0.372 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
...+.+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||.++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQR-QKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHH-SSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999 7999999999999999 99999999999999999998764
No 33
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.73 E-value=2.1e-18 Score=127.41 Aligned_cols=64 Identities=34% Similarity=0.470 Sum_probs=59.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 101 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 101 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR-NRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT-CSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 35789999999999999999999 7999999999999999 9999999999999999999987643
No 34
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=129.28 Aligned_cols=63 Identities=25% Similarity=0.375 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
...+|.|+.|+..|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQK-TQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcC-CCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccCC
Confidence 356889999999999999999999 7999999999999999 99999999999999999988643
No 35
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=1.9e-18 Score=126.86 Aligned_cols=61 Identities=21% Similarity=0.392 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 102 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 102 ~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
.+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+...
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA-NPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhh
Confidence 5789999999999999999999 7999999999999999 99999999999999999988653
No 36
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=132.92 Aligned_cols=72 Identities=33% Similarity=0.567 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhh-------------cC----CCccchhhhhhhhhhHH
Q 022558 99 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-------------HG----QISETNVYNWFQNRRAR 161 (295)
Q Consensus 99 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~-------------~~----~Ls~~~V~vWFQNRRaK 161 (295)
.++.||.|+.|++.|+.+||..|+. ++||+..+|++||..|.. |+ .|++.+|+|||||||+|
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~-~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 3467889999999999999999999 899999999999999942 34 79999999999999999
Q ss_pred HHHHhhhhcc
Q 022558 162 SKRKQLVSSS 171 (295)
Q Consensus 162 ~Kr~~~~~~~ 171 (295)
+|++++....
T Consensus 82 ~kr~~~~~~~ 91 (102)
T 2da6_A 82 EAFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHHS
T ss_pred HHHhhHhhhc
Confidence 9999887644
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-18 Score=125.09 Aligned_cols=61 Identities=30% Similarity=0.488 Sum_probs=58.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
||+|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV-NCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 678999999999999999999 7999999999999999 999999999999999999987654
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=6.7e-18 Score=120.22 Aligned_cols=57 Identities=32% Similarity=0.399 Sum_probs=54.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 102 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 102 ~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
++|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ-QRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 4678999999999999999999 7999999999999999 9999999999999999975
No 39
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=5.4e-18 Score=126.98 Aligned_cols=64 Identities=31% Similarity=0.486 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
.+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+||..+.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQK-THYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhh
Confidence 456788999999999999999999 7999999999999999 999999999999999999997664
No 40
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.72 E-value=4.3e-18 Score=131.88 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHh
Q 022558 99 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 166 (295)
Q Consensus 99 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~ 166 (295)
....+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 3456889999999999999999999 7999999999999999 9999999999999999999864
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.5e-17 Score=124.61 Aligned_cols=62 Identities=27% Similarity=0.404 Sum_probs=57.8
Q ss_pred CCCCCCCCHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 103 ARQRWTPTPVQLQILESIFD-QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F~-~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
++.|+.|+..|+.+||..|. . ++||+..+|.+||..| ||++.+|+|||||||+|+||.....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT-TSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccCC
Confidence 56799999999999999999 6 6999999999999999 9999999999999999999987643
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.71 E-value=5.6e-18 Score=122.06 Aligned_cols=58 Identities=31% Similarity=0.518 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 105 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 105 ~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|++||||||+|+||..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR-THYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999 7999999999999999 99999999999999999999764
No 43
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=6.1e-18 Score=129.29 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~----~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
+.++.||.||.|+.+|+.+||.+|+. + +||+..+|++||..| +|++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 34567889999999999999999998 5 899999999999999 99999999999999999874
No 44
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.9e-17 Score=123.57 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=57.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
.+.|+.|+..|+.+||..|...++||+..+|.+||..| +|++.+|+|||||||+|+||.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccCC
Confidence 46789999999999999999326999999999999999 9999999999999999999987543
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=7e-18 Score=121.75 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
++.+|.|+.|+..|+.+||.+|.. ++||+..++.+||..| ||++.+|+|||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRR-KQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-CCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 356789999999999999999999 7999999999999999 9999999999999999975
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.2e-17 Score=131.60 Aligned_cols=64 Identities=33% Similarity=0.393 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
...+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHF-NKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 456789999999999999999999 7999999999999999 999999999999999999998764
No 47
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.9e-17 Score=129.19 Aligned_cols=58 Identities=14% Similarity=0.359 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhhc
Q 022558 108 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 170 (295)
Q Consensus 108 ~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~~ 170 (295)
.||.+||.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|||++.....
T Consensus 17 ~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLN-SSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHhh
Confidence 7899999999999999 7999999999999999 99999999999999999998765543
No 48
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.1e-17 Score=125.27 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=55.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 105 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 105 ~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
.|+.||.+|+.+||..|.. ++||+..+|++||..| ||++++|+|||||||+|+|+.+..-
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~-~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQ-CQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 5667999999999999999 8999999999999999 9999999999999999999976653
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=118.26 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 107 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
|.|+..|+.+||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR-QKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh-cCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 67999999999999999 7999999999999999 999999999999999999986
No 50
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.69 E-value=1.7e-17 Score=127.94 Aligned_cols=62 Identities=27% Similarity=0.369 Sum_probs=57.8
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 103 ARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F---~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
||+|+.|+..|+.+||.+| .. ++||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 77 7999999999999999 9999999999999999999987654
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=123.36 Aligned_cols=61 Identities=23% Similarity=0.445 Sum_probs=56.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 104 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 104 R~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
++|+.||..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|++.+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ-NPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 45677999999999999999 7999999999999999 9999999999999999999977643
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.69 E-value=3.6e-17 Score=122.25 Aligned_cols=62 Identities=27% Similarity=0.369 Sum_probs=58.0
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 103 ARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F---~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
||+|+.|+..|+.+||.+| .. ++||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~-~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcc-CCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcccccccc
Confidence 6789999999999999999 77 7999999999999999 9999999999999999999976543
No 53
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=123.16 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 101 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 101 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
..++.|+.|+.+|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+||.+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLK-NQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCcC
Confidence 34678999999999999999999 7999999999999999 999999999999999999987654
No 54
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=1.4e-17 Score=127.39 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQ-----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~-----~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
...+.||.||.|+.+|+.+|| .|.. + +||+..+|.+||..| +|++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 345678899999999999999 7887 5 899999999999999 99999999999999999875
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=123.05 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=60.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhhcc
Q 022558 101 ISARQRWTPTPVQLQILESIFDQG--TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 171 (295)
Q Consensus 101 ~~rR~Rt~ft~~Ql~~LE~~F~~~--n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~~~ 171 (295)
+.+++|+.|+.+|+.+||.+|... ++||+..++.+||..| +|++.+|+|||||||+|+|+.......
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~~~ 74 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQRR 74 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHhcc
Confidence 467789999999999999999872 4999999999999999 999999999999999999987665433
No 56
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-17 Score=124.92 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=57.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 102 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 102 ~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
..+.|+.|+.+|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||..+.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR-NQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH-SSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhccc
Confidence 4556899999999999999999 7999999999999999 999999999999999999997654
No 57
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=129.66 Aligned_cols=65 Identities=28% Similarity=0.400 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 99 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 99 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
....+|+|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||.+..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVR-TQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhccc
Confidence 3456788999999999999999999 7999999999999999 999999999999999999997543
No 58
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=1.1e-16 Score=119.58 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 100 KISARQRWTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~--~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
.+.++.|+.|+..|+.+||.+|.. .++||+..++.+||..| +|++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccccc
Confidence 356788999999999999999975 26999999999999999 999999999999999999997653
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=8.3e-17 Score=125.24 Aligned_cols=58 Identities=24% Similarity=0.438 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhhc
Q 022558 108 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 170 (295)
Q Consensus 108 ~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~~ 170 (295)
.||.+|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+|+......
T Consensus 19 ~~t~~Ql~~Le~~F~~-~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLK-SSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred cCCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 4899999999999999 7999999999999999 99999999999999999998776543
No 60
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.66 E-value=6.2e-18 Score=149.31 Aligned_cols=136 Identities=20% Similarity=0.230 Sum_probs=89.3
Q ss_pred HHHHHhhhhhhhhcCCccCCCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccch--------hccc
Q 022558 11 QQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDL--------AAAG 82 (295)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~g~~~g~~~s~~~i~~l~~qi~~~~~ic~~~~~~~k~ls~~~~~--------~sg~ 82 (295)
..++...+-.+++.|+||.++.-.+| +|+..|+++.+........+. ..+..|....+.. ..+.
T Consensus 29 ~~l~~~Ik~~l~~~gitQ~~lA~~~G------iSqs~ISr~l~~~~~~~~~kr--aaly~W~~~~~~~i~~~~~~~~~~~ 100 (194)
T 1ic8_A 29 WRVAKMVKSYLQQHNIPQREVVDTTG------LNQSHLSQHLNKGTPMKTQKR--AALYTWYVRKQREVAQQFTHAGQGG 100 (194)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHHHHHSBCCCCHHHH--HHHHHHHHHHTTTTHHHHCCC----
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhC------CChHHHHHHHhcCcccccccc--ccchhhHHHhhhhhhccccCCCCCC
Confidence 45666778889999999999886664 788999988654322222221 1233333222110 0011
Q ss_pred CCCCcccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCC-----------------
Q 022558 83 RLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ----------------- 145 (295)
Q Consensus 83 ~~g~~~~~p~~~s~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~----------------- 145 (295)
......++ ....++.||.|+.|++.|+.+||..|.. ++||+..+|++||..| +
T Consensus 101 ~~~~~~~~-----~~~~~k~rr~R~~ft~~ql~~Le~~F~~-~~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~gl 170 (194)
T 1ic8_A 101 LIEEPTGD-----ELPTKKGRRNRFKWGPASQQILFQAYER-QKNPSKEERETLVEEC----NRAECIQRGVSPSQAQGL 170 (194)
T ss_dssp ---------------------CCCCCCCHHHHHHHHHHHHH-HCCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTT
T ss_pred CCCCCccc-----ccccccCCCCCcccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----Cchhhccccccccccccc
Confidence 11111111 1244677899999999999999999999 7999999999999999 7
Q ss_pred ----CccchhhhhhhhhhHHHHH
Q 022558 146 ----ISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 146 ----Ls~~~V~vWFQNRRaK~Kr 164 (295)
|++.+|+|||||||+|+|.
T Consensus 171 g~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 171 GSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp GGGCCCHHHHHHHHHHHHHHCC-
T ss_pred cccccCccccchhchhhhhhhhc
Confidence 9999999999999999765
No 61
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=3.9e-17 Score=119.00 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 102 SARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 102 ~rR~Rt~ft~~Ql~~LE~~F---~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
.++.|+.|+..|+.+||.+| .. ++||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~-~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999 77 7999999999999999 99999999999999999876
No 62
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.64 E-value=4.2e-17 Score=129.54 Aligned_cols=71 Identities=28% Similarity=0.474 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhc--------------CC---CccchhhhhhhhhhH
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQH--------------GQ---ISETNVYNWFQNRRA 160 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~--------------~~---Ls~~~V~vWFQNRRa 160 (295)
..++.||.|+.|+..|+.+||..|.. ++||+..+|++||..|+.. .| |++.+|+|||||||+
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~-~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYER-QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 34567889999999999999999999 8999999999999993110 18 999999999999999
Q ss_pred HHHHHhhhh
Q 022558 161 RSKRKQLVS 169 (295)
Q Consensus 161 K~Kr~~~~~ 169 (295)
++|++++..
T Consensus 84 k~k~k~~~~ 92 (99)
T 1lfb_A 84 EEAFRHKLA 92 (99)
T ss_dssp TTSCCC---
T ss_pred HHHHhchhh
Confidence 998876554
No 63
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=3.1e-16 Score=115.87 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHH
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 162 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~ 162 (295)
+.+..+|.||.|+.+||.+|+.+|..-++||+.+.|..||.+| ||++++|+|||||||.-.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHhhccceeee
Confidence 4456789999999999999999999934999999999999999 999999999999999753
No 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.63 E-value=3.6e-16 Score=112.48 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 105 QRWTPTPVQLQILESIFDQG--TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 105 ~Rt~ft~~Ql~~LE~~F~~~--n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
+|+.|+..|+.+||.+|... ++||+..++.+||..+ ||++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 36889999999999999982 4999999999999999 999999999999999999873
No 65
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=1.2e-16 Score=119.75 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=52.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 103 ARQRWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F-~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
.+.|..++.+|+.+||..| .. ++||+..+|.+||..| +|++++|+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~-~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV-TKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCC
Confidence 3455667888999999999 88 7999999999999999 999999999999999999974
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.61 E-value=4.7e-16 Score=114.55 Aligned_cols=52 Identities=21% Similarity=0.398 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHh
Q 022558 110 TPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 166 (295)
Q Consensus 110 t~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~ 166 (295)
+.+|+.+||..|.. ++||+..+|.+||..| ||++++|++||||||+|+|+.+
T Consensus 12 ~~~Ql~~LE~~F~~-~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQ-SQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHG-GGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 68999999999999 7999999999999999 9999999999999999999864
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-16 Score=117.42 Aligned_cols=57 Identities=35% Similarity=0.451 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 107 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
...+..|+..||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||.+..
T Consensus 9 ~~~t~~ql~~LE~~F~~-~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSH-QKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhh
Confidence 46799999999999999 7999999999999999 999999999999999999987653
No 68
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.60 E-value=8.6e-16 Score=118.63 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 101 ISARQRWTPTPVQLQILESIFDQ---GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 101 ~~rR~Rt~ft~~Ql~~LE~~F~~---~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
.++++|+.|+..|+.+||.+|.. + +||+..++.+||..| ||++.+|+|||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcc
Confidence 35667999999999999999998 5 999999999999999 9999999999999999987
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.7e-16 Score=113.55 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 106 Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
+..++..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL-NAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 345679999999999999 8999999999999999 99999999999999998765
No 70
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.58 E-value=1.3e-15 Score=116.74 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 103 ARQRWTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F~~--~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
++.|+.|+..|+.+||.+|.. .++||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHH----CCCHHHcccccHHHHccccccccC
Confidence 345666999999999999997 23999999999999999 999999999999999999986543
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=6e-16 Score=113.59 Aligned_cols=51 Identities=24% Similarity=0.493 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 111 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 111 ~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
+.|+.+||..|...++||+..+|.+||.+| +|++++|+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCCC
Confidence 457999999994327999999999999999 999999999999999998863
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.54 E-value=2.2e-15 Score=129.01 Aligned_cols=63 Identities=33% Similarity=0.414 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
.+.||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+...
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKE-NKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCC
Confidence 456889999999999999999999 7999999999999999 99999999999999999887543
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=1.3e-14 Score=107.05 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhh
Q 022558 108 TPTPVQLQILESIFD---QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 168 (295)
Q Consensus 108 ~ft~~Ql~~LE~~F~---~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~ 168 (295)
.|+.+|+.+|+.+|. . ++||+..++.+||..+ +|++.+|++||||||+|+|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~-~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLT-HPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHH
Confidence 689999999999999 8 7999999999999999 999999999999999999986544
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.47 E-value=7.1e-14 Score=125.17 Aligned_cols=64 Identities=34% Similarity=0.595 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhh-------------c----CCCccchhhhhhhhhhH
Q 022558 98 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-------------H----GQISETNVYNWFQNRRA 160 (295)
Q Consensus 98 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~-------------~----~~Ls~~~V~vWFQNRRa 160 (295)
..++.||.|+.|++.|+.+||.+|.. ++||+..+|++||..|.. | ..|++.+|+|||||||+
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~-~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 55678899999999999999999999 899999999999999831 0 12899999999999998
Q ss_pred HH
Q 022558 161 RS 162 (295)
Q Consensus 161 K~ 162 (295)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 63
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.7e-13 Score=101.74 Aligned_cols=46 Identities=15% Similarity=0.474 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHH
Q 022558 111 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 161 (295)
Q Consensus 111 ~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK 161 (295)
.+|+.+||.+|.. |++|+.++|..||..+ ||++++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~-n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM-NMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 6899999999999 8999999999999999 99999999999999983
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.30 E-value=5.1e-12 Score=98.29 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhhc
Q 022558 107 WTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 170 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~--~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~~ 170 (295)
..|+.+++.+|+.+|.. .++||+..++.+||..+ ||++.||++||+|||.|.|+......
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 46899999999999976 25999999999999999 99999999999999999998766543
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.16 E-value=8.7e-12 Score=118.18 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
++.|+.++..|+..||+.|.. ++||+..+|.+||.+| +|+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~-~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRR-KQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 456788999999999999999 7999999999999999 9999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.70 E-value=3.4e-09 Score=69.31 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.2
Q ss_pred chhhhhhhhhhHHHHHHhhhhcc
Q 022558 149 TNVYNWFQNRRARSKRKQLVSSS 171 (295)
Q Consensus 149 ~~V~vWFQNRRaK~Kr~~~~~~~ 171 (295)
+||+|||||||+||||++.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999999887544
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.38 E-value=0.066 Score=39.35 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhh
Q 022558 114 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 156 (295)
Q Consensus 114 l~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQ 156 (295)
...|+.+|.. .+.+.......|+.+. +|+..+|+-||-
T Consensus 18 ~e~L~~Yy~~-hk~L~EeDl~~L~~ks----kms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAA-HQQLRETDIPQLSQAS----RLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHH-TCCCCTTHHHHHHHHT----TCCHHHHHHHHH
T ss_pred chHHHHHHHH-hcccchhhHHHHHHHh----CCCHHHHHHHHH
Confidence 4589999999 7999999999999999 999999999995
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=71.40 E-value=8.5 Score=25.97 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhh
Q 022558 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 157 (295)
Q Consensus 106 Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQN 157 (295)
|..|+.+....+..++.. .........++|..+ ||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~--g~s~~~~~~~vA~~~----gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN--DNDCKGNQRATARKY----NIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH--CTTTTTCHHHHHHHT----TSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc--CCCcchHHHHHHHHH----CcCHHHHHHHHHH
Confidence 456888888777555555 233222356889999 9999999999754
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=69.60 E-value=9.2 Score=29.57 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 105 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 105 ~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
+|..+|.++...+-..+.. +..... .+||..+ |++...|..|..+++....
T Consensus 4 ~r~~~t~e~K~~iv~~~~~-~g~~~~---~~~A~~~----gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE-NPDLRK---GEIARRF----NIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH-CTTSCH---HHHHHHH----TCCHHHHHHHHHTHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHH-CCCCcH---HHHHHHh----CCCHHHHHHHHhchhhhcc
Confidence 5778999999877777755 344433 3689999 9999999999987765433
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=64.21 E-value=9.9 Score=27.83 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 109 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 109 ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
++..++.+|.-.|..+ + ...+||..| |++...|+.+...-|.|.|+.-.
T Consensus 38 L~~~~r~vl~l~~~~g--~----s~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG--W----STAQIATDL----GIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTSC--C----CHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHHHH
Confidence 4677788887766552 2 245889999 99999999999877777766543
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=63.48 E-value=11 Score=27.58 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhh
Q 022558 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 156 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQ 156 (295)
++.+..++.++...+-..+.. .. ...+||..+ |++...|+.|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~--g~----s~~~iA~~~----gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD--GE----SKASVARDI----GVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH--TC----CHHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC--CC----CHHHHHHHH----CcCHHHHHHHHH
Confidence 445667888886555555654 22 245889999 999999999974
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=56.55 E-value=7.6 Score=24.39 Aligned_cols=42 Identities=10% Similarity=0.329 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhH
Q 022558 109 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160 (295)
Q Consensus 109 ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRa 160 (295)
++.++...+...+.. . . ...+||..| |++...|..|+.....
T Consensus 6 ~~~~~~~~i~~l~~~--g-~---s~~~ia~~l----gvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEK--G-H---PRQQLAIIF----GIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHT--T-C---CHHHHHHTT----SCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHc--C-C---CHHHHHHHH----CCCHHHHHHHHHHccc
Confidence 455555555555554 2 2 245789999 9999999999975443
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=55.94 E-value=12 Score=25.22 Aligned_cols=47 Identities=11% Similarity=-0.085 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 108 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 108 ~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
.+++.+..+|.-.|..+ + ...+||..| |++...|+.+...-|.+.|+
T Consensus 15 ~L~~~~r~il~l~~~~g--~----s~~eIA~~l----gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG--L----SYADAAAVC----GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC--C----CHHHHHHHH----TSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 36788888998877552 2 235889999 99999999988766655544
No 86
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=54.27 E-value=10 Score=30.14 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 115 QILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 115 ~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
.++.-.|+. |+||..+ |--.. =.|||-+||.++++-
T Consensus 16 RiIkiLyQS-NPyP~pe-------------GTRqa-----RRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 16 RLIKFLYQS-NPPPNPE-------------GTRQA-----RRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHS-SCCCCCC-------------CCTTT-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc-CCCCCCC-------------Cchhh-----hHhHHHHHHHHHHHH
Confidence 455556777 8999874 22111 269999999988873
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=54.10 E-value=21 Score=21.74 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhh
Q 022558 108 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 157 (295)
Q Consensus 108 ~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQN 157 (295)
.++.++...+...+.. .+ + ..+||..| +++...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~--g~-s---~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL--NV-S---LHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT--TC-C---HHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc--CC-C---HHHHHHHH----CcCHHHHHHHHhh
Confidence 4567766555555654 22 2 45889999 9999999999853
No 88
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=53.44 E-value=2.8 Score=37.32 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhH
Q 022558 115 QILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160 (295)
Q Consensus 115 ~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRa 160 (295)
......|.. ..|- .....+||+.. |++...|+.+|.++-.
T Consensus 127 ~aa~~l~~~-~G~~-~~T~~~IA~~A----Gvs~gtlY~yF~sKe~ 166 (311)
T 4ich_A 127 ETAWRLIAR-RGYH-NVRIHDIASEL----GTSNATIHYHFPSKKD 166 (311)
T ss_dssp HHHHHHHHH-HCGG-GCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHH-cCCc-cCCHHHHHHHh----CCCchhHHHhCCCHHH
Confidence 344445666 3443 34566889999 9999999999999854
No 89
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=47.92 E-value=30 Score=26.13 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHH
Q 022558 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 162 (295)
Q Consensus 106 Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~ 162 (295)
...+++.++.+|.-+++- +. ..+||..| ++++..|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G---~s----~~EIA~~L----~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG---FL----VTEIAKKL----NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT---CC----HHHHHHHH----TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC---CC----HHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 456899999999876533 22 35899999 999999999887555443
No 90
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=47.90 E-value=0.3 Score=40.76 Aligned_cols=30 Identities=0% Similarity=-0.172 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCH
Q 022558 100 KISARQRWTPTPVQLQILESIFDQGTGTPSK 130 (295)
Q Consensus 100 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~~Ps~ 130 (295)
.+.+|+||.|+..|+.+|+..|+. ++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~-~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQA-NPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCC-CCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhC-CCCccc
Confidence 456889999999999999999999 799875
No 91
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=47.36 E-value=22 Score=27.52 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhh
Q 022558 108 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 167 (295)
Q Consensus 108 ~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~ 167 (295)
.+++.+..+|. .|.. .+ ...+||..| |++...|+.+...-|.+-|+.-.
T Consensus 109 ~L~~~~r~v~~-~~~~--g~----s~~EIA~~l----gis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR--GY----SYREIATIL----SKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHTT--TC----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777 4444 23 245889999 99999999999877776666543
No 92
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=46.71 E-value=28 Score=26.93 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 109 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 109 ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
+++.+..+|.-.|..+ +. ..+||..| |++...|+.|...-|.+.|+.
T Consensus 23 L~~~~r~vl~l~y~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 23 LTDKQMNYIELYYADD--YS----LAEIADEF----GVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp SCHHHHHHHHHHHHTC--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 5788888888876662 22 34889999 999999999998777776654
No 93
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=44.36 E-value=15 Score=26.77 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=23.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHhhhh
Q 022558 115 QILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 169 (295)
Q Consensus 115 ~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~~~~ 169 (295)
.++.-+|+. |+||+.+- ..=| =.|||-+||.++.+-
T Consensus 19 RiIkiLyQS-NP~P~p~G-Trqa-----------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 19 RLIKFLYQS-NPPPNPEG-TRQA-----------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHT-CCCCCCCS-CHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc-CCCCCCCC-chHH-----------------HHHHHHHHHHHHHHH
Confidence 455566777 89998741 1111 158999999887763
No 94
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=43.41 E-value=25 Score=25.42 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCCccchhhhhhh
Q 022558 107 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 156 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~----~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQ 156 (295)
|.++.+++..+...|.. .+.+.+..+...+...+ +++...|..+|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~~ 50 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIWE 50 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 56789999999999976 23577778777777777 888777766553
No 95
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.48 E-value=15 Score=27.24 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 107 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
..+++.++.+|.-++.- +. ..+||..| +++...|+.+..+-+.|.+..
T Consensus 26 ~~Lt~~e~~vl~l~~~g---~s----~~eIA~~l----~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG---LT----NKQIADRM----FLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHHHHTT---CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHHHHcC---CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHcCC
Confidence 35789999999886433 22 35889999 999999999887666665543
No 96
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=41.78 E-value=36 Score=23.51 Aligned_cols=50 Identities=8% Similarity=0.081 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 108 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 108 ~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
.+++.+..+|.-.|..... ......+||..| |++...|+.|...-+.|-+
T Consensus 10 ~L~~~er~il~l~~~l~~~--~~~s~~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG--REHTLEEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS--SCCCHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 4688899999888851000 011234889999 9999999998876666655
No 97
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=40.16 E-value=34 Score=26.31 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHHh
Q 022558 109 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 166 (295)
Q Consensus 109 ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~~ 166 (295)
+++.+..+|.-.|..+ + ...+||..| |++...|+.+...-|.+-|+.-
T Consensus 26 L~~~~r~vl~l~~~~g--~----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED--Y----SLSEIADTF----NVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSC--C----CHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 4677888888776552 2 234889999 9999999999987777766543
No 98
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.24 E-value=33 Score=23.26 Aligned_cols=47 Identities=30% Similarity=0.282 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 106 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 106 Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
-..+++.++.+|.-++ . .+ ...+||..| +++...|+.+...-+.|.+
T Consensus 9 ~~~L~~~e~~il~~~~-~--g~----s~~eIA~~l----~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLV-Q--DK----TTKEIASEL----FISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHT-T--TC----CHHHHHHHH----TSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH-c--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHHC
Confidence 3457899999998853 3 23 235889999 9999999988876555543
No 99
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=38.46 E-value=28 Score=25.37 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCCccchhhhhhh
Q 022558 107 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 156 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~----~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQ 156 (295)
|.++.++...|+..|.. .+.+.+..+...+...+ +++...|..+|.
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~~ 51 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLAHIWS 51 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 45788899999999966 24577888777777777 888877776663
No 100
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=37.92 E-value=68 Score=23.68 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCCccchhhhhhh
Q 022558 105 QRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 156 (295)
Q Consensus 105 ~Rt~ft~~Ql~~LE~~F~~----~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQ 156 (295)
....++.+++..|..+|.. ++.+.+..+...+...+. ..++...|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg--~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLG--YMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHT--CCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC--CCCCHHHHHHHHH
Confidence 4567899999999999987 457899998888888771 1356677777774
No 101
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=37.12 E-value=31 Score=25.18 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHhhcCCCccchhhhhhh
Q 022558 106 RWTPTPVQLQILESIFDQGT-GTPSKQKIKEITVELSQHGQISETNVYNWFQ 156 (295)
Q Consensus 106 Rt~ft~~Ql~~LE~~F~~~n-~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQ 156 (295)
|..|+.++....-..+.. . .. ...+||..+ |++...|+.|..
T Consensus 3 r~~ys~e~k~~~v~~~~~-~~g~----s~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYEN-SDGA----SLQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTT-GGGS----CHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-cCCC----hHHHHHHHH----CcCHHHHHHHHH
Confidence 346788777655555533 1 12 356889999 999999999974
No 102
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=35.98 E-value=16 Score=29.22 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhH
Q 022558 112 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160 (295)
Q Consensus 112 ~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRa 160 (295)
.-+..-...|.. ..| . .....||+.. |++...|+.+|.|+-.
T Consensus 19 ~Il~aA~~lf~~-~G~-~-~s~~~IA~~a----gvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 19 KILAAAVRVFSE-EGL-D-AHLERIAREA----GVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHH-HCT-T-CCHHHHHHHT----TCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHh-cCc-C-CCHHHHHHHh----CCChHHHHHHcCCHHH
Confidence 445556666887 577 5 6888999999 9999999999999743
No 103
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=35.51 E-value=33 Score=24.82 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 107 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
..+++.++.+|.-++.- +.. .+||..| +++...|+.+..+-+.|.+
T Consensus 28 ~~Lt~~e~~vl~l~~~g---~s~----~eIA~~l----~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKG---YSN----QEIASAS----HITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHHHHTT---CCT----THHHHHH----TCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHcC---CCH----HHHHHHH----CcCHHHHHHHHHHHHHHHC
Confidence 35788899999875432 332 3889999 9999999998876555543
No 104
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=35.35 E-value=42 Score=26.92 Aligned_cols=47 Identities=13% Similarity=-0.016 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 109 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 109 ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
+++.+..+|.-.|..+ + ...+||..| |++...|+.+...-|.|.|+.
T Consensus 141 L~~~~r~vl~l~~~~g--~----s~~EIA~~l----gis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG--L----SYEEIAAIM----DCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC--C----CHHHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555544431 2 234889999 999999999998777776664
No 105
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.29 E-value=49 Score=27.30 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHHH
Q 022558 109 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 165 (295)
Q Consensus 109 ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr~ 165 (295)
+++.+..+|.-.|..+ + ...+||..| |++...|+.+...-|.|.|+.
T Consensus 188 L~~~~r~vl~l~~~~g--~----s~~EIA~~l----gis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE--L----PAKEVAKIL----ETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC--C----CHHHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC--C----CHHHHHHHh----CCCHHHHHHHHHHHHHHHHHH
Confidence 5677778887777552 2 234889999 999999999998777777664
No 106
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.84 E-value=39 Score=24.15 Aligned_cols=46 Identities=30% Similarity=0.273 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 107 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
..+++.++.+|.-++ . .+ ...+||..| +++...|+.+..+-+.|.+
T Consensus 20 ~~Lt~~e~~vl~l~~-~--g~----s~~eIA~~l----~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLIA-Q--GL----PNKMIARRL----DITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHHT-T--TC----CHHHHHHHH----TSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHH-c--CC----CHHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 458899999998853 3 22 245889999 9999999988876555543
No 107
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.78 E-value=33 Score=24.75 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 108 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 108 ~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
.+++.+..+|.-.|..... ......+||..| |++...|+.+...-+.|-|
T Consensus 18 ~L~~~er~vl~l~~~l~~~--~~~s~~EIA~~l----gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG--KPKTLEEVGQYF----NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS--SCCCHHHHHHHH----TCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 3678888888888751000 011245889999 9999999998865555544
No 108
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=31.66 E-value=36 Score=28.03 Aligned_cols=43 Identities=14% Similarity=0.345 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhH
Q 022558 112 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160 (295)
Q Consensus 112 ~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRa 160 (295)
.-+......|.. ..|-. ....+||+.. |++...|+..|.++-.
T Consensus 34 ~Il~aA~~lf~~-~G~~~-~t~~~IA~~A----gvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 34 TLLSVAVQVFIE-RGYDG-TSMEHLSKAA----GISKSSIYHHVTGKEE 76 (230)
T ss_dssp CHHHHHHHHHHH-HCTTT-CCHHHHHHHH----TSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHHH-cCccc-cCHHHHHHHH----CCChhHHHHhCCCHHH
Confidence 456666777877 45543 3566899999 9999999999999843
No 109
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=30.79 E-value=35 Score=23.21 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 108 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 108 ~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
.+++.+..+|.-.|.. ..+ ......+||..| |++...|+.+...-+.|.|
T Consensus 5 ~L~~~er~il~l~~~l-~~~-~g~s~~eIA~~l----gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGI-DMN-TDYTLEEVGKQF----DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTT-TSS-SCCCHHHHHHHH----TCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHcc-CCC-CCCCHHHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 3678888999888821 000 011235889999 9999999988765444443
No 110
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.97 E-value=33 Score=27.69 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHH
Q 022558 111 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 163 (295)
Q Consensus 111 ~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~K 163 (295)
..-+..-...|.. ..|- ......||+.. |+++..|+..|.|+-.=..
T Consensus 14 ~~Il~aA~~lF~~-~Gy~-~ts~~~IA~~a----Gvsk~tlY~~F~sKe~L~~ 60 (202)
T 2i10_A 14 QVALQTAMELFWR-QGYE-GTSITDLTKAL----GINPPSLYAAFGSKRDLFE 60 (202)
T ss_dssp HHHHHHHHHHHHH-HTTT-TCCHHHHHHHH----TCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcc-cCCHHHHHHHh----CCChHHHHHHhCCHHHHHH
Confidence 3445555666877 4554 34567899999 9999999999998755443
No 111
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.39 E-value=28 Score=27.84 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 135 EITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 135 ~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
+||..| |+++..|+.+...-|.+.|+
T Consensus 156 eIA~~l----gis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 156 ELAAET----GLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CSTTTC----CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 344555 99999999999877777665
No 112
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=27.09 E-value=1e+02 Score=24.06 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCCccc
Q 022558 105 QRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISET 149 (295)
Q Consensus 105 ~Rt~ft~~Ql~~LE~~F~~----~n~~Ps~~~r~~LA~~L~~~~~Ls~~ 149 (295)
+|..+|.+|+..|..+|.. ++.+.+..+...+...| |....
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~l----g~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL----GRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHT----TSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc----CCCcc
Confidence 4567999999999999976 34688888888877777 65554
No 113
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=26.23 E-value=48 Score=26.36 Aligned_cols=43 Identities=12% Similarity=0.425 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhH
Q 022558 112 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160 (295)
Q Consensus 112 ~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRa 160 (295)
.-+......|.. ..|- .....+||+.. |++...|+.+|.++-.
T Consensus 35 ~Il~aa~~l~~~-~G~~-~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 35 QIIKVATELFRE-KGYY-ATSLDDIADRI----GFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHHH-TCTT-TCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHH-cCcc-cCcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 334455556777 4554 34566899999 9999999999999854
No 114
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=25.96 E-value=40 Score=23.23 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 109 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 109 ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
+++.+..+|.-++ . .+. ..+||..| +++...|+.+...-+.|.+.
T Consensus 17 L~~~e~~vl~l~~-~--g~s----~~eIA~~l----~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVV-A--GLP----NKSIAYDL----DISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHT-T--TCC----HHHHHHHT----TSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH-c--CCC----HHHHHHHH----CcCHHHHHHHHHHHHHHHcC
Confidence 5677788887743 2 222 34889999 99999999888765555443
No 115
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=25.51 E-value=26 Score=28.44 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 113 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 113 Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
-+......|.. ..|- .....+||+.. |++...|+.+|.++-.=..-
T Consensus 33 Il~aa~~lf~~-~G~~-~~tv~~IA~~a----gvs~~t~Y~~F~sK~~Ll~~ 78 (215)
T 2qko_A 33 LVNAAIEVLAR-EGAR-GLTFRAVDVEA----NVPKGTASNYFPSRDDLFDQ 78 (215)
T ss_dssp HHHHHHHHHHH-TCTT-TCCHHHHHHHS----SSTTTCHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHH-hChh-hccHHHHHHHc----CCCcchHHHhCCCHHHHHHH
Confidence 34455556777 4553 44567889999 99999999999997655443
No 116
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=25.33 E-value=1.1e+02 Score=22.37 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=33.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHH
Q 022558 104 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 161 (295)
Q Consensus 104 R~Rt~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK 161 (295)
.....++..++.+|.-++ . .+ ...+||..| ++++..|+....+=+.|
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-~--G~----s~~eIA~~L----~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-K--GF----TNQEIADAL----HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ----CCCHHHHHHHHHHH-T--TC----CHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHH-c--CC----CHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 345678999999998877 3 22 245889999 99999998877654433
No 117
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=25.00 E-value=99 Score=24.47 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=34.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHH-HHhhcCCCccchhhhhhhh
Q 022558 103 ARQRWTPTPVQLQILESIF-DQGTGTPSKQKIKEITV-ELSQHGQISETNVYNWFQN 157 (295)
Q Consensus 103 rR~Rt~ft~~Ql~~LE~~F-~~~n~~Ps~~~r~~LA~-~L~~~~~Ls~~~V~vWFQN 157 (295)
+++|..+|.+|...|-.++ +. ++..+..+...-|. .... +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~-~~~~~q~~la~wa~~~f~~--~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL-QNRSGQQDLIEWFREKFGK--DISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS-SSCCCHHHHHHHHHHHHSS--CCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHCC--CCcHHHHHHHHhh
Confidence 5688999999999999999 55 55555443322221 3300 6788889999865
No 118
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=23.67 E-value=34 Score=26.98 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhH
Q 022558 114 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160 (295)
Q Consensus 114 l~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRa 160 (295)
+......|.. ..|- ......||+.. |++...|+..|.++-.
T Consensus 23 l~aa~~l~~~-~G~~-~~s~~~Ia~~a----gvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 23 MEIALEVFAR-RGIG-RGGHADIAEIA----QVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHHH-SCCS-SCCHHHHHHHH----TSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHh-cCcc-cccHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 3444455777 4554 34566899999 9999999999999843
No 119
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.47 E-value=93 Score=23.50 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhh
Q 022558 107 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 157 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQN 157 (295)
..++.++...+...+.. .. ...+||..| |++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~--G~----s~~~ia~~l----gis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL--NV----SLHEMSRKI----SRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT--TC----CHHHHHHHH----TCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc--CC----CHHHHHHHH----CcCHHHHHHHHHc
Confidence 45678887777777765 22 245789999 9999999999964
No 120
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=22.92 E-value=49 Score=26.44 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhh
Q 022558 113 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 159 (295)
Q Consensus 113 Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRR 159 (295)
-+..-...|.. ..| . .....||+.. |++...|+.+|.|+-
T Consensus 18 Il~aA~~lf~~-~G~-~-~t~~~IA~~a----gvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 18 VLEVAYDTFAA-EGL-G-VPMDEIARRA----GVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHHH-TCT-T-SCHHHHHHHT----TSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHh-cCC-C-CCHHHHHHHh----CCCHHHHHHHCCCHH
Confidence 34445556888 577 5 5788999999 999999999999974
No 121
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=22.83 E-value=36 Score=23.62 Aligned_cols=39 Identities=8% Similarity=-0.047 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhhhhhhcCCccCCCcccccccccccCCHHHHHHHH
Q 022558 8 EAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLR 52 (295)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~g~~~s~~~i~~l~ 52 (295)
+....+....++.|...|+||.++.-.+| ++..+|.+++
T Consensus 10 ~~~~~~~~~l~~~R~~~gltq~elA~~~g------is~~~is~~e 48 (83)
T 3f6w_A 10 ARYQALLDLLLEARSAAGITQKELAARLG------RPQSFVSKTE 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHH
Confidence 45677888889999999999998876654 4666666555
No 122
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.80 E-value=39 Score=22.14 Aligned_cols=42 Identities=24% Similarity=0.187 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhHHHHH
Q 022558 112 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 164 (295)
Q Consensus 112 ~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRaK~Kr 164 (295)
.++.+|.-++ . .+.. .+||..| ++++..|+.+..+-+.|.+.
T Consensus 2 re~~vl~l~~-~--g~s~----~eIA~~l----~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 2 RERQVLKLID-E--GYTN----HGISEKL----HISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHHHHH-T--SCCS----HHHHHHT----CSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH-c--CCCH----HHHHHHh----CCCHHHHHHHHHHHHHHHCC
Confidence 3556666633 3 2333 3889999 99999999988766655443
No 123
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=22.42 E-value=51 Score=28.10 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCCCCCHH-HHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhH
Q 022558 105 QRWTPTPV-QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160 (295)
Q Consensus 105 ~Rt~ft~~-Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRa 160 (295)
.|...+.+ -+..-...|.. ..|- ......||+.+ |++...|+.+|.||-.
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~-~G~~-~~s~~~IA~~a----Gvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLA-GDAE-TFSVRKLAASL----GTDSSSLYRHFRNKTE 75 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSS-SSCC-CCCHHHHHHHT----TSCHHHHHHHTSSHHH
T ss_pred cchhhHHHHHHHHHHHHHHh-cCcc-cCCHHHHHHHh----CcCHHHHHHHcCCHHH
Confidence 34444543 34455556766 4544 34556889999 9999999999999754
No 124
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=22.40 E-value=52 Score=23.27 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCCccchhhhhhh
Q 022558 106 RWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 156 (295)
Q Consensus 106 Rt~ft~~Ql~~LE~~F~~----~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQ 156 (295)
-..++.+++..|..+|.. .+.+.+..+...+...+ +++...|..+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~----g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTEL----RVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHT----TCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHc----CcCHHHHHHHHH
Confidence 345788899999999976 24577888887777777 888887777774
No 125
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=22.10 E-value=1.1e+02 Score=22.46 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHhhcC-CCCC-HHHHHHHHHHHhhcCCCccchhhhhhh
Q 022558 107 WTPTPVQLQILESIFDQGT-GTPS-KQKIKEITVELSQHGQISETNVYNWFQ 156 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~~n-~~Ps-~~~r~~LA~~L~~~~~Ls~~~V~vWFQ 156 (295)
..|+.++....-..+.... .+++ .....++|..+ |++...|..|..
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~----gIs~~tl~~W~~ 52 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKI----GCTPETLRVWVR 52 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHH----CcCHHHHHHHHH
Confidence 4578887754444443211 1222 13567899999 999999999964
No 126
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=21.85 E-value=41 Score=25.49 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhhhhhcCCccCCCcccccccccccCCHHHHHHHHHH
Q 022558 8 EAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQ 54 (295)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~g~~~s~~~i~~l~~q 54 (295)
+-.+++.+.-++.|..+|+||.+..-.+| +|..+|.++|.=
T Consensus 32 ~l~~~lG~~ir~~R~~~glTQ~eLA~~~g------vs~~~is~~E~G 72 (101)
T 4ghj_A 32 ALAEEIGDRLKQARLNRDLTQSEVAEIAG------IARKTVLNAEKG 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT------SCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHcC------CCHHHHHHHHCC
Confidence 34567888889999999999999876654 577888888754
No 127
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=21.49 E-value=43 Score=23.06 Aligned_cols=38 Identities=5% Similarity=0.091 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhhhhcCCccCCCcccccccccccCCHHHHHHHH
Q 022558 9 AAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLR 52 (295)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~g~~~s~~~i~~l~ 52 (295)
+...+....++.|..+|+||.+..-.+| +|..+|.+++
T Consensus 7 ~~~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e 44 (84)
T 2ef8_A 7 RYRCLVQLLTKLRKEASLSQSELAIFLG------LSQSDISKIE 44 (84)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHH
Confidence 3466788888899999999988766654 4566666655
No 128
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.14 E-value=63 Score=25.70 Aligned_cols=42 Identities=17% Similarity=0.442 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhh
Q 022558 112 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 159 (295)
Q Consensus 112 ~Ql~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRR 159 (295)
.-+......|.. ..|-. ....+||+.. |++...|+..|.|+-
T Consensus 18 ~Il~aA~~lf~~-~G~~~-~s~~~Ia~~a----gvs~~t~Y~yF~sKe 59 (203)
T 3ccy_A 18 TIIERAAAMFAR-QGYSE-TSIGDIARAC----ECSKSRLYHYFDSKE 59 (203)
T ss_dssp HHHHHHHHHHHH-TCTTT-SCHHHHHHHT----TCCGGGGTTTCSCHH
T ss_pred HHHHHHHHHHHH-cCccc-CCHHHHHHHh----CCCcCeeeeeeCCHH
Confidence 344555667888 56643 4567899999 999999999999974
No 129
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=21.00 E-value=51 Score=23.43 Aligned_cols=38 Identities=8% Similarity=-0.076 Sum_probs=28.8
Q ss_pred HHHHHHHhhhhhhhhcCCccCCCcccccccccccCCHHHHHHHH
Q 022558 9 AAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLR 52 (295)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~g~~~s~~~i~~l~ 52 (295)
..+.+....+..|...|+||.+..-.+| +|..+|.+++
T Consensus 11 ~~~~~g~~l~~~R~~~gltq~elA~~~g------is~~~is~~E 48 (86)
T 3eus_A 11 EHVYLCQRLRQARLDAGLTQADLAERLD------KPQSFVAKVE 48 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHTT------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHHHH
Confidence 3456788888999999999998876654 4677766665
No 130
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=20.77 E-value=25 Score=29.43 Aligned_cols=41 Identities=12% Similarity=0.352 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhH
Q 022558 114 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160 (295)
Q Consensus 114 l~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRa 160 (295)
+......|.. ..|- ......||+.. |++...|+..|.|+-.
T Consensus 29 l~aA~~lf~~-~G~~-~~s~~~IA~~a----gvs~~tlY~~F~sKe~ 69 (231)
T 2zcx_A 29 LDAARELGTE-RGIR-EITLTDIAATV----GMHKSALLRYFETREQ 69 (231)
T ss_dssp HHHHHHHHHH-HCST-TCCHHHHHHHH----TSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHh-CCcc-cCCHHHHHHHh----CCCHHHHHHhCCCHHH
Confidence 3444555777 4554 34566899999 9999999999999843
No 131
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=20.29 E-value=1.7e+02 Score=19.77 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCC--ccch---hhhhh
Q 022558 107 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQI--SETN---VYNWF 155 (295)
Q Consensus 107 t~ft~~Ql~~LE~~F~~----~n~~Ps~~~r~~LA~~L~~~~~L--s~~~---V~vWF 155 (295)
..++++++..|...|.. .+.+.+..+...+...+ |. +... |..+|
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~----g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKL----GQTYTKRETEAIMKEA 59 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHT----SCCCSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH----cCCCCHHHHHHHHHHH
Confidence 45678889999999865 24578888887777777 63 4445 55555
No 132
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=20.02 E-value=70 Score=26.70 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCCccchhhhhhhhhhH
Q 022558 114 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 160 (295)
Q Consensus 114 l~~LE~~F~~~n~~Ps~~~r~~LA~~L~~~~~Ls~~~V~vWFQNRRa 160 (295)
+......|.. ..| .......||+.. |++...|+..|.++-.
T Consensus 49 l~AA~~lf~~-~G~-~~~t~~~IA~~a----Gvs~~tlY~~F~sK~~ 89 (255)
T 3g1o_A 49 LATAENLLED-RPL-ADISVDDLAKGA----GISRPTFYFYFPSKEA 89 (255)
T ss_dssp HHHHHHHHTT-SCG-GGCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHH-cCC-ccCcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 4444555766 444 334566899999 9999999999999843
Done!