BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022559
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
           Is Achieved
 pdb|2QXF|A Chain A, Product Bound Structure Of Exonuclease I At 1.5 Angstrom
           Resolution
 pdb|3C94|A Chain A, ExoiSSB-Ct Complex
 pdb|3C95|A Chain A, Exonuclease I (Apo)
 pdb|3HL8|A Chain A, Crystal Structure Of Exonuclease I In Complex With
           Inhibitor Bcbp
 pdb|3HP9|A Chain A, Crystal Structure Of SsbEXONUCLEASE I IN COMPLEX WITH
           INHIBITOR CFAM
          Length = 482

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 91  DPKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKV 150
           DP +W W      WDL++V       RP     P         +N  GL  FR+    K 
Sbjct: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWP---------ENDDGLPSFRLEHLTKA 172

Query: 151 N 151
           N
Sbjct: 173 N 173


>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
           Mn2+
 pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
           Galnac-ser On Lectin Domain
          Length = 570

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 93  KSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGL--EEFRVAGCVK 149
           KS+KW + K  WDL +     + P      I N VG  + A    G      R+ GCV+
Sbjct: 400 KSFKWFMTKIAWDLPKFYPPVEPPAAAWGEIRN-VGTGLCADTKHGALGSPLRLEGCVR 457


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,753,948
Number of Sequences: 62578
Number of extensions: 293884
Number of successful extensions: 562
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 2
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)