Query 022559
Match_columns 295
No_of_seqs 199 out of 1281
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:27:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01812 5-FTHF_cyc-lig: 5-for 100.0 2.7E-38 5.9E-43 277.4 14.5 169 96-288 1-186 (186)
2 TIGR02727 MTHFS_bact 5,10-meth 100.0 4.3E-37 9.3E-42 269.8 15.3 166 96-288 1-181 (181)
3 PLN02812 5-formyltetrahydrofol 100.0 1E-36 2.2E-41 274.2 16.9 176 92-288 3-207 (211)
4 PRK10333 5-formyltetrahydrofol 100.0 8.6E-36 1.9E-40 262.5 14.9 146 127-288 16-176 (182)
5 KOG4410 5-formyltetrahydrofola 100.0 8.4E-36 1.8E-40 274.4 13.5 205 84-289 21-233 (396)
6 COG0212 5-formyltetrahydrofola 100.0 7.4E-35 1.6E-39 258.6 16.0 173 93-288 2-184 (191)
7 KOG3093 5-formyltetrahydrofola 100.0 3.6E-34 7.7E-39 249.7 10.6 176 92-288 4-199 (200)
8 PRK13146 hisH imidazole glycer 37.2 11 0.00023 33.8 -0.1 54 216-275 39-92 (209)
9 COG1332 CRISPR system related 30.2 20 0.00044 35.3 0.5 16 235-250 303-318 (369)
10 PRK01175 phosphoribosylformylg 27.7 28 0.00061 32.6 1.0 58 216-278 46-110 (261)
11 PF10627 CsgE: Curli assembly 25.0 48 0.001 27.0 1.8 28 224-254 2-29 (107)
12 cd01740 GATase1_FGAR_AT Type 1 22.7 60 0.0013 29.6 2.1 54 217-275 42-97 (238)
13 PF01686 Adeno_Penton_B: Adeno 22.6 44 0.00096 33.5 1.3 23 216-239 197-219 (456)
14 PRK13152 hisH imidazole glycer 21.6 33 0.00072 30.3 0.2 52 217-274 36-87 (201)
No 1
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=100.00 E-value=2.7e-38 Score=277.38 Aligned_cols=169 Identities=19% Similarity=0.176 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeC----CCCcHHHHHHHHHCCCEEE
Q 022559 96 KWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNP----DSPQKQVRLLTLSGGKKLL 171 (295)
Q Consensus 96 Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~----e~~t~~li~~al~~GK~V~ 171 (295)
|++||++++++|++++... .. ..|..|+++|.+++.|++|++|++|. |++|.++++.+++.||+|+
T Consensus 1 K~~lR~~~~~~r~~l~~~~-----~~-----~~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Ev~t~~li~~~~~~gk~v~ 70 (186)
T PF01812_consen 1 KKELRKEIRARRRALSPEE-----RA-----EASQAICERLLALPEYRKAQTIALYLPMGGEVDTRPLIERALKDGKRVY 70 (186)
T ss_dssp HHHHHHHHHHHHHTS-HHH-----HH-----HHHHHHHHHHHCCHHHHCTSEEEE----TTS---HHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHcCCHHH-----HH-----HHHHHHHHHHHhChhhhhhceEEEccCCCCCCCHHHHHHHHHHcCCeEe
Confidence 8999999999999987642 11 47899999999999999999999996 5789999999999999999
Q ss_pred EceecCCCC---c--EEeeCC-CCCCCcccccccccCCccccccccCCCC----CccccEEEEccceeeCCCCCeeecCC
Q 022559 172 TPQPRLRTG---F--FSVLDS-SMLSPSTINEACTSVGVAKYGKQIGLDE----IIKVDLIVIGSVAVNPKTGARLGKGE 241 (295)
Q Consensus 172 lP~~~~~~~---~--~~~~~~-~~l~~g~l~~~~~~~G~~~~geP~~~~~----~~~iDLIIVPgvAFD~~~G~RLGyGg 241 (295)
+|++....+ + |..+.. +.+ ..|.+++.||..... ..++|||||||||||+ +|+||||||
T Consensus 71 lP~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~gI~EP~~~~~~~~~~~~idlvlVP~lafd~-~G~RLG~Gg 139 (186)
T PF01812_consen 71 LPRVHPDDGRMRMMEFRRYDSDDPL----------EKGRFGIPEPDGESPPPDPPEEIDLVLVPGLAFDR-NGNRLGYGG 139 (186)
T ss_dssp EEEEETTCTEECEEEEEEESSCGCC----------EECETTCEEEESTCSEEGGGGG-SEEEEE-SEEET-TSBEE-SSS
T ss_pred cceecccccccceeEEeecCCcccc----------cccccCccCCccccccccccccCCEEEeCcEEECC-CCCeEecCC
Confidence 999865442 2 223332 222 246677778865431 2389999999999999 999999999
Q ss_pred chhhhhhhhhhhcCCCCCCCCEEEEEcCccccCCCCC---cccccEEEEE
Q 022559 242 GFAELEYGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL---FYLVLFILFV 288 (295)
Q Consensus 242 GYYDRfLa~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~---D~~vd~Ii~~ 288 (295)
|||||||+.+.. ....+.+||+||++|+++.||. |++||.||++
T Consensus 140 GyYDR~L~~~~~---~~~~~~~igl~~~~q~~~~iP~e~hD~~ld~iiTe 186 (186)
T PF01812_consen 140 GYYDRFLARLPP---GRKKPLKIGLAFDFQIVDDIPVEPHDIPLDAIITE 186 (186)
T ss_dssp THHHHHHHHHTS----SS--EEEEEE-GGGEES-----TTS-B-SEEEET
T ss_pred CHHHhHHHhhhc---ccCCCeEEEEeehhheeCCCCCCcccccCCEEEcC
Confidence 999999998864 1235678999999999999996 7999999974
No 2
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=100.00 E-value=4.3e-37 Score=269.81 Aligned_cols=166 Identities=23% Similarity=0.208 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeC----CCCcHHHHHHHHHCCCEEE
Q 022559 96 KWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNP----DSPQKQVRLLTLSGGKKLL 171 (295)
Q Consensus 96 Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~----e~~t~~li~~al~~GK~V~ 171 (295)
|++||++++++|++++.+. .. ..|..++++|.+++.|+++++|++|+ |++|.++++.+++.||+|+
T Consensus 1 K~~lR~~~~~~r~~l~~~~-----~~-----~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~~E~~t~~li~~~~~~~k~v~ 70 (181)
T TIGR02727 1 KKELRKKLLERRKALSSEE-----RK-----AASEAIAKRLLALIEWKNAKTIALYLPLRGEVDTRPLIEQLLKEGKRVA 70 (181)
T ss_pred CHHHHHHHHHHHHcCCHHH-----HH-----HHHHHHHHHHHhChhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCCCEEE
Confidence 6899999999998876642 11 47999999999999999999999996 5689999999999999999
Q ss_pred EceecCCC--C-cEEeeCCC-CCCCcccccccccCCccccccccCC----CCCccccEEEEccceeeCCCCCeeecCCch
Q 022559 172 TPQPRLRT--G-FFSVLDSS-MLSPSTINEACTSVGVAKYGKQIGL----DEIIKVDLIVIGSVAVNPKTGARLGKGEGF 243 (295)
Q Consensus 172 lP~~~~~~--~-~~~~~~~~-~l~~g~l~~~~~~~G~~~~geP~~~----~~~~~iDLIIVPgvAFD~~~G~RLGyGgGY 243 (295)
||++.... . +|..++++ .+. .|.+++.||... ....++|||||||||||+ +|+||||||||
T Consensus 71 lP~~~~~~~~~~~~~~~~~~~~l~----------~~~~gi~eP~~~~~~~~~~~~idlvivP~lafD~-~G~RLG~GgGy 139 (181)
T TIGR02727 71 LPKVDPDGKEMLFFRIWSPSDLLT----------KGKFGILEPPGDSTEPVDPDEIDLIIVPGVAFDR-RGYRLGYGGGY 139 (181)
T ss_pred EEEEecCCCceeEEEecCCCCccc----------cCCCCCCCCCCcccCcCCcccCCEEEeCceEEcC-CCccccCCcch
Confidence 99985433 2 24345543 332 355666677532 235678999999999999 99999999999
Q ss_pred hhhhhhhhhhcCCCCCCCCEEEEEcCccccCCCCC---cccccEEEEE
Q 022559 244 AELEYGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL---FYLVLFILFV 288 (295)
Q Consensus 244 YDRfLa~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~---D~~vd~Ii~~ 288 (295)
|||||+.++. .+++||+||++|+++.+|+ |++||.||++
T Consensus 140 YDR~L~~~~~------~~~~igv~~~~q~~~~lp~e~~Di~ld~iiTe 181 (181)
T TIGR02727 140 YDRFLANLKG------KTVVVGLAFDFQLVDELPREPHDVPVDAIITE 181 (181)
T ss_pred HHHHHHhccc------CCCEEEEEecceeeCccCCCccCccCCEEeCC
Confidence 9999997542 3448999999999999997 7999999863
No 3
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=100.00 E-value=1e-36 Score=274.15 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=137.8
Q ss_pred chhHHHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeC------CCCcHHHHHHHHH
Q 022559 92 PKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNP------DSPQKQVRLLTLS 165 (295)
Q Consensus 92 ~~~~Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~------e~~t~~li~~al~ 165 (295)
..+.|++||++++++|+.++.+. . ...|..|+++|.+++.|++|++|++|+ |++|.++++.+++
T Consensus 3 ~~~~K~~lR~~~~~~R~~l~~~~-----~-----~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~ 72 (211)
T PLN02812 3 IREQKKALRKEVRRALKALSPEQ-----R-----AQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLREVDTSKILSEILQ 72 (211)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHH-----H-----HHHHHHHHHHHHcChhhHhcCEEEEEEECCCCCCcCHHHHHHHHHH
Confidence 35689999999999998876531 1 147999999999999999999999993 6778999999999
Q ss_pred CC-CEEEEceecCCCC-c-EEeeCC--CCCCCcccccccccCCccccccccCCC-----------CCccccEEEEcccee
Q 022559 166 GG-KKLLTPQPRLRTG-F-FSVLDS--SMLSPSTINEACTSVGVAKYGKQIGLD-----------EIIKVDLIVIGSVAV 229 (295)
Q Consensus 166 ~G-K~V~lP~~~~~~~-~-~~~~~~--~~l~~g~l~~~~~~~G~~~~geP~~~~-----------~~~~iDLIIVPgvAF 229 (295)
.| |+|++|++..... + |..+.+ +.+. .|.+++.||.... ...++||||||||||
T Consensus 73 ~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~----------~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~laf 142 (211)
T PLN02812 73 NPDKRLYVPRVEDKNSNMRMLHITDMADDLV----------ANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAF 142 (211)
T ss_pred cCCcEEEEeEEecCCCeEEEEEeCCcccccc----------CCCCCccCCCccccccccccccccCCCCCCEEEeCceEE
Confidence 99 9999999753322 3 445543 2332 4666777775321 246789999999999
Q ss_pred eCCCCCeeecCCchhhhhhhhhhhc--CCCCCCCCEEEEEcCccccC--CCCC---cccccEEEEE
Q 022559 230 NPKTGARLGKGEGFAELEYGMLRYM--GAIDDSTPVVTSGKCGFCRI--FLPL---FYLVLFILFV 288 (295)
Q Consensus 230 D~~~G~RLGyGgGYYDRfLa~l~~~--~~~~~~~~~Vgla~d~Qvvd--~LP~---D~~vd~Ii~~ 288 (295)
|. +|+|||||||||||||+.++.. ......+.+|||||++|+++ .||. |++||.||++
T Consensus 143 D~-~G~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~~~~iP~e~hD~~ld~iiTe 207 (211)
T PLN02812 143 DR-SGRRLGRGGGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILDEGSVPVDETDVLVDALVTP 207 (211)
T ss_pred CC-CCCcCcCCCchHHHHHHHhhhhhccccCCCceEEEEeeheeeECCCCCCCccccccCCEEEcC
Confidence 99 9999999999999999987421 00001345899999999999 9996 7999999985
No 4
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=100.00 E-value=8.6e-36 Score=262.52 Aligned_cols=146 Identities=18% Similarity=0.116 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhcChhhhcccEEEEeC----CCCcHHHHHHHHHCCCEEEEceecCC-CC-c-EEeeCC-CCCCCcccccc
Q 022559 127 VGASVAAKNLTGLEEFRVAGCVKVNP----DSPQKQVRLLTLSGGKKLLTPQPRLR-TG-F-FSVLDS-SMLSPSTINEA 198 (295)
Q Consensus 127 ~~S~~I~~~L~~l~~~~~Ak~I~vy~----e~~t~~li~~al~~GK~V~lP~~~~~-~~-~-~~~~~~-~~l~~g~l~~~ 198 (295)
..|++|+++|.+++.|++|++|++|+ |++|.++++.+++.||+|++|++... .+ + |..+.+ +.+.
T Consensus 16 ~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~gk~v~lP~v~~~~~~~m~f~~~~~~~~l~------- 88 (182)
T PRK10333 16 EMGQQAATRMMTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQSELV------- 88 (182)
T ss_pred HHHHHHHHHHHhChhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCCCEEEEeEEecCCCCEEEEEECCCCCccc-------
Confidence 47999999999999999999999996 56899999999999999999997532 12 2 434443 3332
Q ss_pred cccCCccccccccCC----CCCccccEEEEccceeeCCCCCeeecCCchhhhhhhhhhhcCCCCCCCCEEEEEcCccccC
Q 022559 199 CTSVGVAKYGKQIGL----DEIIKVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSGKCGFCRI 274 (295)
Q Consensus 199 ~~~~G~~~~geP~~~----~~~~~iDLIIVPgvAFD~~~G~RLGyGgGYYDRfLa~l~~~~~~~~~~~~Vgla~d~Qvvd 274 (295)
.|.+++.||... .....+|||||||||||+ +|+|||||||||||||+.++.. .+.+||+||++|+++
T Consensus 89 ---~~~~gI~EP~~~~~~~~~~~~iDlviVP~laFD~-~G~RLG~GgGyYDR~L~~~~~~-----~~~~igla~~~Q~~~ 159 (182)
T PRK10333 89 ---MNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDE-YGQRLGMGGGFYDRTLQNWQHY-----KTQPVGYAHDCQLVE 159 (182)
T ss_pred ---cCCCCCCCCCccccccCCcccCCEEEeCceEECC-CCCcccCCcchHHHHHHHhccc-----CCcEEEEeeeeEEeC
Confidence 466677777532 235678999999999999 9999999999999999976421 245799999999999
Q ss_pred CCCC---cccccEEEEE
Q 022559 275 FLPL---FYLVLFILFV 288 (295)
Q Consensus 275 ~LP~---D~~vd~Ii~~ 288 (295)
+||. |++||.||++
T Consensus 160 ~ip~e~hD~~ld~iiTe 176 (182)
T PRK10333 160 KLPVEEWDIPLPAVVTP 176 (182)
T ss_pred CcCCCcccCcCCEEEeC
Confidence 9997 7999999984
No 5
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=100.00 E-value=8.4e-36 Score=274.42 Aligned_cols=205 Identities=50% Similarity=0.686 Sum_probs=184.9
Q ss_pred hccCCCC-CchhHHHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeCCCCcHHHHHH
Q 022559 84 TESGAED-DPKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQKQVRLL 162 (295)
Q Consensus 84 ~~~~~~~-~~~~~Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~e~~t~~li~~ 162 (295)
++++|++ ++..+|+.||.++|..+++.+.+..|+++|+|||||.++.++|+.+.++++|+.|+.|.++++-+++.+.+.
T Consensus 21 ~~~~s~~qd~~~~k~~iR~q~W~~me~~n~a~~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVnpD~pl~~~r~L 100 (396)
T KOG4410|consen 21 QEVSSTTQDIEPTKRSIRVQTWKKMEEGNVAIGPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVNPDRPLHEFREL 100 (396)
T ss_pred ccccCCCCCcchhHHHHHHHHHHHHhhcccccCCcchhhcCccccchHHHHHHhhhhHHHhhcceeecCCCchHHHHHHH
Confidence 3444554 679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCEEEEceecCCCCcEEeeCCCCCCCccccccc-ccCCccccccccCCCCCccccEEEEccceeeCCCCCeeecCC
Q 022559 163 TLSGGKKLLTPQPRLRTGFFSVLDSSMLSPSTINEAC-TSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGE 241 (295)
Q Consensus 163 al~~GK~V~lP~~~~~~~~~~~~~~~~l~~g~l~~~~-~~~G~~~~geP~~~~~~~~iDLIIVPgvAFD~~~G~RLGyGg 241 (295)
+|...|+|++|.+++++++|..++.......++...| ++.|..+|+.++++++..++|||||++||+.+ .|+|||+|.
T Consensus 101 ~L~~~Ksll~PspRlrtglf~kv~~~~~ate~i~~~c~tsqgv~ky~~~IGLDs~lkvDlvViGSVavs~-~G~RiGkGe 179 (396)
T KOG4410|consen 101 ALLADKSLLLPSPRLRTGLFLKVDVLADATEEIKKECLTSQGVQKYRSEIGLDSGLKVDLVVIGSVAVSR-EGYRIGKGE 179 (396)
T ss_pred HhhcccceecCCchhhcceeeeeccCCCCcHHHHHHHHhhhhHHHhCcccccccCceEEEEEEeeEEecc-cceeeccCC
Confidence 9999999999999988898866665444433444444 77899899999998888899999999999999 999999999
Q ss_pred chhhhhhhhhhhcCCCCCCCCEEEEEcCccccCCCCC------cccccEEEEEE
Q 022559 242 GFAELEYGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL------FYLVLFILFVY 289 (295)
Q Consensus 242 GYYDRfLa~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~------D~~vd~Ii~~~ 289 (295)
||.|..+++|..||++++++++|+++||||+||+||. |++||+|..+-
T Consensus 180 GfAdLeygmli~mGAi~~~TpvVTiVHDcQvVD~iP~el~~~hD~pVDiI~TPT 233 (396)
T KOG4410|consen 180 GFADLEYGMLIEMGAITPKTPVVTIVHDCQVVDSIPPELFQKHDTPVDIIATPT 233 (396)
T ss_pred chhhhhhHHHHHhcccCCCCceEEEEecceeeccCCHHHHhhcCCCccEEeccc
Confidence 9999999999999999999999999999999999995 79999998743
No 6
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=100.00 E-value=7.4e-35 Score=258.63 Aligned_cols=173 Identities=21% Similarity=0.129 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeC----CCCcHHHHHHHHHCCC
Q 022559 93 KSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNP----DSPQKQVRLLTLSGGK 168 (295)
Q Consensus 93 ~~~Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~----e~~t~~li~~al~~GK 168 (295)
.+.|++||+++++.|.+++... .+ ..+..+++++..++.+..+++|++|+ |+++.++++.+|++||
T Consensus 2 ~~~K~~lR~~~~~~r~~l~~~~----~~------~~~~~i~~~~~~~~~~~~~~~ia~y~~~~~E~~~~~l~~~~l~~gk 71 (191)
T COG0212 2 MATKSALRKLLLERRIALSPEE----RH------EADQRIAKLLASLIEVKKAKTIALYVPFNGEIDTRPLIRQALRRGK 71 (191)
T ss_pred chHHHHHHHHHHHHHHcCCHHH----HH------HHHHHHHHHHHhccccccccEEEEEeccCCCCCcHHHHHHHHHcCC
Confidence 4689999999999998876541 12 36777999999999999999999996 5678999999999999
Q ss_pred EEEEceecCCCCcEEeeCCCCCCCcccccccccCCccccccccCCC---CCccccEEEEccceeeCCCCCeeecCCchhh
Q 022559 169 KLLTPQPRLRTGFFSVLDSSMLSPSTINEACTSVGVAKYGKQIGLD---EIIKVDLIVIGSVAVNPKTGARLGKGEGFAE 245 (295)
Q Consensus 169 ~V~lP~~~~~~~~~~~~~~~~l~~g~l~~~~~~~G~~~~geP~~~~---~~~~iDLIIVPgvAFD~~~G~RLGyGgGYYD 245 (295)
+|++|++......|..+.++. . .. ...+.+++.+|.... ....+|||||||||||+ +|+||||||||||
T Consensus 72 ~l~lP~~~~~~~~f~~~~~~~-~-~~-----~~~~~~gi~eP~~~~~~~~~~~iDlvlvP~Vafd~-~G~RLG~GgGyYD 143 (191)
T COG0212 72 RLLLPKLRDYKLLFLRYIPDP-L-QP-----LIKNRFGILEPGEYGRKIPPPEIDLVLVPLVAFDK-QGYRLGYGGGYYD 143 (191)
T ss_pred EEEEeEEEcCcceeEEecCCC-C-cc-----cccccccccCCCccCCccCCCcCCEEEeCceeECC-CCccccCCCchHH
Confidence 999999863222343555442 1 00 113345555664321 12678999999999999 9999999999999
Q ss_pred hhhhhhhhcCCCCCCCCEEEEEcCccccCCCCC---cccccEEEEE
Q 022559 246 LEYGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL---FYLVLFILFV 288 (295)
Q Consensus 246 RfLa~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~---D~~vd~Ii~~ 288 (295)
|||+.+. ..++.+||+||+||+++.+|. |++||.||++
T Consensus 144 R~la~~~-----~~~~~~ig~~~~~Q~v~~lP~e~hDv~ld~ivt~ 184 (191)
T COG0212 144 RYLANLR-----GRKTPTVGIAYDCQLVDHLPREPHDVPLDAIVTE 184 (191)
T ss_pred HHHHhhc-----cCCCCEEEEEEeeeeeccCCCCcccCcccEEEeC
Confidence 9999775 135788999999999999986 7999999983
No 7
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.6e-34 Score=249.67 Aligned_cols=176 Identities=14% Similarity=0.156 Sum_probs=136.3
Q ss_pred chhHHHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeCC-----CCcHHHHHHHHHC
Q 022559 92 PKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPD-----SPQKQVRLLTLSG 166 (295)
Q Consensus 92 ~~~~Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~e-----~~t~~li~~al~~ 166 (295)
..+.|..||+++++.|++++.+. .. .+|..|+++++++++|++++.|++|++ ++|..||..+++.
T Consensus 4 i~~~K~~LR~~lk~~L~ald~e~-----i~-----rQs~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~ 73 (200)
T KOG3093|consen 4 ISATKRLLRRQLKRSLGALDAEI-----IA-----RQSEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQD 73 (200)
T ss_pred HHHHHHHHHHHHHHHHhccCHHH-----HH-----HHHHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhc
Confidence 35679999999999999998752 22 489999999999999999999999974 5689999999999
Q ss_pred CCEEEEceecCCCC-c-EEee-CCCCCCCcccccccccCCcccccccc--CCC-------CCccccEEEEccceeeCCCC
Q 022559 167 GKKLLTPQPRLRTG-F-FSVL-DSSMLSPSTINEACTSVGVAKYGKQI--GLD-------EIIKVDLIVIGSVAVNPKTG 234 (295)
Q Consensus 167 GK~V~lP~~~~~~~-~-~~~~-~~~~l~~g~l~~~~~~~G~~~~geP~--~~~-------~~~~iDLIIVPgvAFD~~~G 234 (295)
||.||+|++....+ + +..+ +.+.+.. -....|++|. +.. ....+|||||||||||+ .|
T Consensus 74 gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~---------l~~t~w~i~qp~~~~~re~~~~t~~~lDLiivPGvAFd~-~g 143 (200)
T KOG3093|consen 74 GKEVFIPRCTHTSSKMDMVRIDHMEELES---------LPMTSWGIRQPKPGGPREDALETGHPLDLIIVPGVAFDR-KG 143 (200)
T ss_pred CCeEEeeeeecCCCceeEEEeCChHHHhh---------CcccccCCCCCCCCCchhhhccCCCcceEEEecccccch-hh
Confidence 99999999853332 2 3233 2232221 0112334433 211 12359999999999999 99
Q ss_pred CeeecCCchhhhhhhhhhhcCCCCCCCCEEEEEcCccccCCCCC---cccccEEEEE
Q 022559 235 ARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL---FYLVLFILFV 288 (295)
Q Consensus 235 ~RLGyGgGYYDRfLa~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~---D~~vd~Ii~~ 288 (295)
.|||+|+||||+||.++..... ..++.+||||+.+|++.+||+ |+.+|.||++
T Consensus 144 ~RlGhGkGYYD~flkry~~~~~-~~kp~~vgL~l~EQI~~~IPv~~~Dv~lD~vvt~ 199 (200)
T KOG3093|consen 144 ARLGHGKGYYDDFLKRYQIHAP-EQKPLLVGLCLKEQILSEIPVEEHDVKLDAVVTE 199 (200)
T ss_pred hhccCCcchHHHHHHHHHHhcc-ccCchhhhhhhhHhhcccCCCCccceeeeEeecC
Confidence 9999999999999998876422 346778999999999999997 7999999974
No 8
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=37.16 E-value=11 Score=33.85 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=30.4
Q ss_pred CccccEEEEccceeeCCCCCeeecCCchhhhhhhhhhhcCCCCCCCCEEEEEcCccccCC
Q 022559 216 IIKVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSGKCGFCRIF 275 (295)
Q Consensus 216 ~~~iDLIIVPgvAFD~~~G~RLGyGgGYYDRfLa~l~~~~~~~~~~~~Vgla~d~Qvvd~ 275 (295)
..+.|.||+||..... ...+.=.--|+.++.+.... ....+++|+|+-.|++..
T Consensus 39 l~~~d~lIlpG~~~~~-~~~~~l~~~~~~~~~~~~~~-----~~~~PvlGiC~G~q~l~~ 92 (209)
T PRK13146 39 VAAADRVVLPGVGAFA-DCMRGLRAVGLGEAVIEAVL-----AAGRPFLGICVGMQLLFE 92 (209)
T ss_pred hcCCCEEEECCCCcHH-HHHHHHHHCCcHHHHHHHHH-----hCCCcEEEECHHHHHHhh
Confidence 3568999999975422 12111111144555444221 124578999999997643
No 9
>COG1332 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=30.24 E-value=20 Score=35.35 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=12.9
Q ss_pred CeeecCCchhhhhhhh
Q 022559 235 ARLGKGEGFAELEYGM 250 (295)
Q Consensus 235 ~RLGyGgGYYDRfLa~ 250 (295)
.+||+||||+-.++..
T Consensus 303 l~lG~GgG~~skTi~~ 318 (369)
T COG1332 303 LHLGFGGGWRSKTIGI 318 (369)
T ss_pred EEEecccceeeeeeee
Confidence 5899999999876643
No 10
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=27.74 E-value=28 Score=32.59 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=34.3
Q ss_pred CccccEEEEccceeeCCCCCeeecCCchhhhhhh----hhhhcCCCCCCCCEEEEEcCccccC---CCCC
Q 022559 216 IIKVDLIVIGSVAVNPKTGARLGKGEGFAELEYG----MLRYMGAIDDSTPVVTSGKCGFCRI---FLPL 278 (295)
Q Consensus 216 ~~~iDLIIVPgvAFD~~~G~RLGyGgGYYDRfLa----~l~~~~~~~~~~~~Vgla~d~Qvvd---~LP~ 278 (295)
..+.|.||+||- |.- |-.++.|..+-.++.. .++.. .....+++|+|.-+|++- -||-
T Consensus 46 l~~~DgLvipGG-fs~--gD~l~~g~~~~~~l~~~l~~~Ik~f--~~~gkpVLGICnG~QlLa~~GlLpg 110 (261)
T PRK01175 46 VSDYDCLVIPGG-FSA--GDYIRAGAIFAARLKAVLRKDIEEF--IDEGYPIIGICNGFQVLVELGLLPG 110 (261)
T ss_pred hhhCCEEEECCC-CCc--ccccccchhhHHHHHHHHHHHHHHH--HHCCCeEEEECHHHHHHHHCCCCCC
Confidence 356899999995 642 4556666544333211 11111 123457899999999864 3563
No 11
>PF10627 CsgE: Curli assembly protein CsgE; InterPro: IPR018900 Curli are a class highly aggregated surface fibres that are part of a complex extracellular matrix. They promote biofilm formation in addition to other activities. CsgE is a non-structural protein involved in curli biogenesis []. CsgE forms an outer membrane complex with the curli assembly proteins CsgG and CsgF [].
Probab=25.02 E-value=48 Score=27.03 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.6
Q ss_pred EccceeeCCCCCeeecCCchhhhhhhhhhhc
Q 022559 224 IGSVAVNPKTGARLGKGEGFAELEYGMLRYM 254 (295)
Q Consensus 224 VPgvAFD~~~G~RLGyGgGYYDRfLa~l~~~ 254 (295)
|+||..|+ .--|+|+- ||+.|...++..
T Consensus 2 i~GliiDr-T~Tr~G~D--FY~~Fs~~~~~~ 29 (107)
T PF10627_consen 2 IDGLIIDR-TITRFGHD--FYRYFSQKWRDI 29 (107)
T ss_pred CCcEEecC-ccccchHH--HHHHHHHHHhhc
Confidence 58999999 88998875 999999887653
No 12
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=22.66 E-value=60 Score=29.59 Aligned_cols=54 Identities=13% Similarity=-0.056 Sum_probs=32.5
Q ss_pred ccccEEEEccceeeCCCCCeeecCCchhhh--hhhhhhhcCCCCCCCCEEEEEcCccccCC
Q 022559 217 IKVDLIVIGSVAVNPKTGARLGKGEGFAEL--EYGMLRYMGAIDDSTPVVTSGKCGFCRIF 275 (295)
Q Consensus 217 ~~iDLIIVPgvAFD~~~G~RLGyGgGYYDR--fLa~l~~~~~~~~~~~~Vgla~d~Qvvd~ 275 (295)
.+.|.||+||- |. .|-.++-|..+-.+ ....++.. .....+++|+|+-+|++-.
T Consensus 42 ~~~d~liipGG-~~--~~d~l~~~~~~~~~~~~~~~l~~~--~~~g~pvlGIC~G~QlL~~ 97 (238)
T cd01740 42 DDYDGVVLPGG-FS--YGDYLRAGAIAAASPLLMEEVKEF--AERGGLVLGICNGFQILVE 97 (238)
T ss_pred hhCCEEEECCC-CC--cccccccccccccChhHHHHHHHH--HhCCCeEEEECcHHHHHHH
Confidence 46799999996 32 34455555554443 22222221 1235688999999998754
No 13
>PF01686 Adeno_Penton_B: Adenovirus penton base protein; InterPro: IPR002605 This family consists of various adenovirus penton base proteins, from both the mastadenoviridae having mammalian hosts and the aviadenoviridae having avian hosts. The penton base is a major structural protein forming part of the penton which consists of a base and a fibre, the pentons hold a morphologically prominent position at the vertex capsomer in the adenovirus particle []. In mammalian adenovirus there is only one tail on each base where as in avian adenovirus there are two [].; GO: 0005198 structural molecule activity; PDB: 3IZO_D 3IYN_M 1VSZ_N 2C9F_D 2C9G_B 2C6S_I 2BLD_B 1X9P_A 1X9T_A.
Probab=22.60 E-value=44 Score=33.45 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=17.2
Q ss_pred CccccEEEEccceeeCCCCCeeec
Q 022559 216 IIKVDLIVIGSVAVNPKTGARLGK 239 (295)
Q Consensus 216 ~~~iDLIIVPgvAFD~~~G~RLGy 239 (295)
.-.+|+|+.||+|+|- .--||+-
T Consensus 197 afHPDIvLlPGCaVDF-T~SRL~n 219 (456)
T PF01686_consen 197 AFHPDIVLLPGCAVDF-TYSRLSN 219 (456)
T ss_dssp BESSEEEEETT-EEE--TTSTHHH
T ss_pred ccCCCEEecCCccccc-chhhhhh
Confidence 3467999999999999 7778763
No 14
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.61 E-value=33 Score=30.30 Aligned_cols=52 Identities=15% Similarity=0.040 Sum_probs=31.4
Q ss_pred ccccEEEEccceeeCCCCCeeecCCchhhhhhhhhhhcCCCCCCCCEEEEEcCccccC
Q 022559 217 IKVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSGKCGFCRI 274 (295)
Q Consensus 217 ~~iDLIIVPgvAFD~~~G~RLGyGgGYYDRfLa~l~~~~~~~~~~~~Vgla~d~Qvvd 274 (295)
..+|.||+||..=-. +..++-.--|+.+....... ....+++|+|+-.|++-
T Consensus 36 ~~~d~lilPG~g~~~-~~~~~l~~~~~~~~l~~~~~-----~~~~pvlGiC~G~Q~l~ 87 (201)
T PRK13152 36 QKADKLLLPGVGSFK-EAMKNLKELGFIEALKEQVL-----VQKKPILGICLGMQLFL 87 (201)
T ss_pred cCCCEEEECCCCchH-HHHHHHHHcCcHHHHHHHHH-----hCCCcEEEECHhHHHHh
Confidence 357889999987533 33333333356555433211 12457899999999764
Done!