Query 022559
Match_columns 295
No_of_seqs 199 out of 1281
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hy3_A 5-formyltetrahydrofolat 100.0 1.6E-39 5.5E-44 289.0 17.7 178 92-289 6-199 (203)
2 1ydm_A Hypothetical protein YQ 100.0 1.3E-39 4.4E-44 286.2 12.3 164 95-287 1-178 (187)
3 2jcb_A 5-formyltetrahydrofolat 100.0 1.6E-39 5.5E-44 289.0 12.9 167 93-288 10-190 (200)
4 1sou_A 5,10-methenyltetrahydro 100.0 2E-39 6.9E-44 286.9 12.0 162 95-287 2-174 (194)
5 1wkc_A HB8 TT1367 protein; str 100.0 1.1E-37 3.9E-42 273.7 14.1 154 95-287 2-165 (184)
6 1sbq_A H91_ORF164, 5,10-methen 100.0 3.8E-37 1.3E-41 271.8 12.4 153 94-288 26-188 (189)
7 3cdk_A Succinyl-COA:3-ketoacid 29.9 73 0.0025 27.9 5.4 33 217-250 150-183 (241)
8 3rrl_A Succinyl-COA:3-ketoacid 26.2 69 0.0024 28.2 4.6 34 216-250 149-183 (235)
9 1dfm_A Endonuclease bglii; res 23.6 96 0.0033 27.4 4.9 31 219-253 124-154 (223)
10 1k6d_A Acetate COA-transferase 23.3 64 0.0022 27.8 3.7 33 217-250 147-180 (220)
No 1
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=100.00 E-value=1.6e-39 Score=288.99 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=139.4
Q ss_pred chhHHHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeC----CCCcHHHHHHHHHCC
Q 022559 92 PKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNP----DSPQKQVRLLTLSGG 167 (295)
Q Consensus 92 ~~~~Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~----e~~t~~li~~al~~G 167 (295)
..+.|++||++++++|++++.+. .. ..|..|+++|.+++.|++|++|++|+ |++|.+|++.+++.|
T Consensus 6 ~~~~K~~LR~~~~~~R~~l~~~~-----~~-----~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~g 75 (203)
T 3hy3_A 6 VSSAKRSLRGELKQRLRAMSAEE-----RL-----RQSRVLSQKVIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRG 75 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHH-----HH-----HHHHHHHHHHHTCHHHHHCSEEECCCCCTTSCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHH-----HH-----HHHHHHHHHHHhCHhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCC
Confidence 35689999999999999887642 11 47999999999999999999999996 568999999999999
Q ss_pred CEEEEceecCCCC-c-EEeeCC-CCCCCcccccccccCCccccccccCCC------CCccccEEEEccceeeCCCCCeee
Q 022559 168 KKLLTPQPRLRTG-F-FSVLDS-SMLSPSTINEACTSVGVAKYGKQIGLD------EIIKVDLIVIGSVAVNPKTGARLG 238 (295)
Q Consensus 168 K~V~lP~~~~~~~-~-~~~~~~-~~l~~g~l~~~~~~~G~~~~geP~~~~------~~~~iDLIIVPgvAFD~~~G~RLG 238 (295)
|+|+||++..... + |..+.. +++. ....|.+++.||.... ...++|||||||||||+ +|+|||
T Consensus 76 k~v~lP~~~~~~~~m~~~~~~~~~~~~-------~L~~g~~GI~EP~~~~~~~~~~~~~~~DlvlVP~vaFD~-~G~RLG 147 (203)
T 3hy3_A 76 KICFIPRYRFQSNHMDMVRIESPEEIS-------LLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDK-HGNRLG 147 (203)
T ss_dssp CEEEEEEEETTTTEEEEEEECCHHHHT-------TSCBCTTSCBCCCTTCCCCBGGGTTCCSEEEECCSEECT-TCCEEC
T ss_pred CEEEEEEEecCCCeEEEEEeCChhhhh-------hccCCCCCCCCCCCccccccccCccCCCEEEeCCeEECC-CCceec
Confidence 9999999853322 3 434543 1111 0124666777775421 23469999999999999 999999
Q ss_pred cCCchhhhhhhhhhhcCCCCCCCCEEEEEcCccccCCCCC---cccccEEEEEE
Q 022559 239 KGEGFAELEYGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL---FYLVLFILFVY 289 (295)
Q Consensus 239 yGgGYYDRfLa~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~---D~~vd~Ii~~~ 289 (295)
||||||||||+.+.... ...+.+||+||++|+++.||. |++||.||++-
T Consensus 148 ~GgGyYDR~L~~~~~~~--~~~~~~igla~~~Q~~~~lP~e~hDi~ld~iiTe~ 199 (203)
T 3hy3_A 148 RGKGYYDAYLKRCLQHQ--EVKPYTLALAFKEQICLQVPVNENDMKVDEVLYED 199 (203)
T ss_dssp SSSCHHHHHHHHHTTTC--SSCCEEEEECCGGGBCSCCCCC--CCCCSEEECC-
T ss_pred CCCchHHHHHHHhhhhc--CCCCeEEEEecHHhccCCCCCCcccccCCEEEeCC
Confidence 99999999999875321 234668999999999999997 79999999864
No 2
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-39 Score=286.23 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeC----CCCcHHHHHHHHHCCCEE
Q 022559 95 WKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNP----DSPQKQVRLLTLSGGKKL 170 (295)
Q Consensus 95 ~Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~----e~~t~~li~~al~~GK~V 170 (295)
.|++||++++++|++++.+. . +..|..|+++|.+++.|++|++|++|+ |++|.++++.+|++||+|
T Consensus 1 ~K~~lR~~~~~~r~~l~~~~-----~-----~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Evdt~~li~~~~~~gk~v 70 (187)
T 1ydm_A 1 MKSQLRKKTLEALSALSNED-----I-----LQKTERMYKYLFSLPEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQV 70 (187)
T ss_dssp ---CHHHHHHHHHHHSCHHH-----H-----HHHHHHHHHHHHTSHHHHTCSEEECCCCCTTSCCCHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHCCCHHH-----H-----HHHHHHHHHHHHhCHHhhhCCEEEEECCCCCCCCHHHHHHHHHHCCCEE
Confidence 48899999999999887642 1 258999999999999999999999997 678999999999999999
Q ss_pred EEceecCCCC-c-EEeeCCC-CCCCcccccccccCCccccccccCC----CCCccccEEEEccceeeCCCCCeeecCCch
Q 022559 171 LTPQPRLRTG-F-FSVLDSS-MLSPSTINEACTSVGVAKYGKQIGL----DEIIKVDLIVIGSVAVNPKTGARLGKGEGF 243 (295)
Q Consensus 171 ~lP~~~~~~~-~-~~~~~~~-~l~~g~l~~~~~~~G~~~~geP~~~----~~~~~iDLIIVPgvAFD~~~G~RLGyGgGY 243 (295)
+||++....+ + |..+++. .+ ..|.+++.||... ....++|||||||||||+ +|+||||||||
T Consensus 71 ~lP~~~~~~~~m~f~~~~~~~~L----------~~~~~gi~EP~~~~~~~~~~~~iDlvivP~vafD~-~G~RLG~GgGy 139 (187)
T 1ydm_A 71 CIPKCHPDTKKMQFRTYQTDDQL----------ETVYAGLLEPVIEKTKEVNPSQIDLMIVPGVCFDV-NGFRVGFGGGY 139 (187)
T ss_dssp EEECC---CCCCCEEECCCCTTH----------HHHHTTSCCCC--CCCCCCGGGCCEEECCCSEEET-TSCEECCSCCS
T ss_pred EEeEEecCCCcEEEEEeCCCCcc----------CcCCCCCCCCCCcccccCCccCCCEEEeCCeEECC-CCCcccCCccH
Confidence 9998742222 3 5456543 23 2466777788532 234689999999999999 99999999999
Q ss_pred hhhhhhhhhhcCCCCCCCCEEEEEcCccccCCCCC---cccccEEEE
Q 022559 244 AELEYGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL---FYLVLFILF 287 (295)
Q Consensus 244 YDRfLa~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~---D~~vd~Ii~ 287 (295)
|||||+.++ .++||+||++|+++.||. |++||.||+
T Consensus 140 YDR~L~~~~--------~~~igla~~~Q~~~~lP~e~hD~~ld~iiT 178 (187)
T 1ydm_A 140 YDRYLSEYE--------GKTVSLLLECQLFAHVPRLPHDIPVHKLIT 178 (187)
T ss_dssp TTTGGGTCC--------SEEEEECCGGGEESCCCCCTTCCCCSEEEC
T ss_pred HHHHHHhCC--------CCEEEEEeHHHhcCCCCCccccCcCCEEEE
Confidence 999998542 257999999999999996 899999997
No 3
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Probab=100.00 E-value=1.6e-39 Score=289.00 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeC----CCCcHHHHHHHHHCCC
Q 022559 93 KSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNP----DSPQKQVRLLTLSGGK 168 (295)
Q Consensus 93 ~~~Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~----e~~t~~li~~al~~GK 168 (295)
.+.|++||++++++|++++.+. .. ..|..|+++|.+++.|++|++|++|+ |++|.++++.+++.||
T Consensus 10 ~~~K~~LR~~~~~~R~~ls~~~-----~~-----~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~gk 79 (200)
T 2jcb_A 10 REEKLRLRKQIIEHMNSLSKER-----YT-----TLSEQIVFSLYEQKEWAEAKTIGITLSMENEVNTYPIIEKAWKEGK 79 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHH-----HH-----HHHHHHHHHHHTSHHHHHCSEEECCCCCTTSCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHH-----HH-----HHHHHHHHHHHhChhhhcCCEEEEECCCCCCCCHHHHHHHHHHCCC
Confidence 6789999999999999987642 11 47899999999999999999999995 6789999999999999
Q ss_pred EEEEceecCCCC-c-EEeeCCC-CCCCcccccccccCCccccccccCC----CCCccccEEEEccceeeCCCCCeeecCC
Q 022559 169 KLLTPQPRLRTG-F-FSVLDSS-MLSPSTINEACTSVGVAKYGKQIGL----DEIIKVDLIVIGSVAVNPKTGARLGKGE 241 (295)
Q Consensus 169 ~V~lP~~~~~~~-~-~~~~~~~-~l~~g~l~~~~~~~G~~~~geP~~~----~~~~~iDLIIVPgvAFD~~~G~RLGyGg 241 (295)
+|+||++....+ + |..+++. .+ ..|.+++.||... ....++|||||||||||+ +|+||||||
T Consensus 80 ~v~lP~~~~~~~~m~f~~~~~~~~L----------~~g~~GI~EP~~~~~~~~~~~~iDlvlVP~vAfD~-~G~RLG~Gg 148 (200)
T 2jcb_A 80 RVVVPKCNKETRTMSFRQISNFDQL----------ETVYMNLREPIPALTEEVNADEIDLQIVPGVAYTE-RGERIGYGG 148 (200)
T ss_dssp EEEEEEEETTTTEEEEEEESSGGGE----------EEEETTEEEECGGGCEECCGGGCSEEECCCSEECT-TSCEECSSS
T ss_pred EEEEeEEEcCCCcEEEEEeCCCccc----------ccCCCCCCCCCCcccccCCccCCCEEEECCeEECC-CCCeeccCC
Confidence 999999753333 3 5456542 23 2466777788531 234689999999999999 999999999
Q ss_pred chhhhhhhhhhhcCCCCCCCCEEEEEcCccccCCCCC---cccccEEEEE
Q 022559 242 GFAELEYGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL---FYLVLFILFV 288 (295)
Q Consensus 242 GYYDRfLa~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~---D~~vd~Ii~~ 288 (295)
|||||||+.++ .++||+||++|+++.||. |++||.||++
T Consensus 149 GyYDR~La~~~--------~~~igla~~~Q~v~~lP~e~hDi~ld~iiTe 190 (200)
T 2jcb_A 149 GYYDRYLVHYK--------GKTLSLAYSFQMVEHIPVEPFDKNVEKIITE 190 (200)
T ss_dssp CHHHHHTTTCC--------SEEEEECCGGGBCSCCCCCTTCCCCSEEEET
T ss_pred chHHHHHhhcC--------CCEEEEEehhhccCCCCCCccCCcCCEEEEC
Confidence 99999998542 257999999999999996 7999999983
No 4
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=100.00 E-value=2e-39 Score=286.93 Aligned_cols=162 Identities=20% Similarity=0.140 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeC----CCCcHHHHHHHHHCCCEE
Q 022559 95 WKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNP----DSPQKQVRLLTLSGGKKL 170 (295)
Q Consensus 95 ~Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~----e~~t~~li~~al~~GK~V 170 (295)
.|++||++++++|++++.+. . +..|..|+++|.+++.|++|++|++|+ |++|.+|++.++++ |+|
T Consensus 2 ~K~~lR~~~~~~r~~l~~~~-----~-----~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Evdt~~li~~~~~~-k~v 70 (194)
T 1sou_A 2 LKSELRKKVLHKRINLSEEE-----R-----RRLSEKVISNLKSLPEFKKSKKVALYCPIKGEVDLTPLFPEVLKE-KEL 70 (194)
T ss_dssp CHHHHHHHHHHHHTTSCHHH-----H-----HHHHHHHHHHHHHCHHHHHCCEEEECCCCSSCCCCGGGHHHHHHH-SEE
T ss_pred CHHHHHHHHHHHHHcCCHHH-----H-----HHHHHHHHHHHHhChhhhcCCEEEEECCCCCCCCHHHHHHHHHHc-CCE
Confidence 49999999999998876542 1 358999999999999999999999998 77899999999999 999
Q ss_pred EEceecCCCCc-EEeeCC-CCCCCcccccccccCCccccccccC--CCCCccccEEEEccceeeCCCCCeeecCCchhhh
Q 022559 171 LTPQPRLRTGF-FSVLDS-SMLSPSTINEACTSVGVAKYGKQIG--LDEIIKVDLIVIGSVAVNPKTGARLGKGEGFAEL 246 (295)
Q Consensus 171 ~lP~~~~~~~~-~~~~~~-~~l~~g~l~~~~~~~G~~~~geP~~--~~~~~~iDLIIVPgvAFD~~~G~RLGyGgGYYDR 246 (295)
+||++. ...+ |..+++ +.+. .|.+++.||.. .....++|||||||||||+ +|+|||||||||||
T Consensus 71 ~lP~~~-~~~m~f~~~~~~~~L~----------~g~~GI~EP~~~~~~~~~~iDlvlvP~vafD~-~G~RLG~GgGyYDR 138 (194)
T 1sou_A 71 ILPKVE-GNEISLYRVHSPACLG----------VGAFGIMEPVEGERVNPEDVDFIAVPGVAFDL-EGYRLGFGKGYYDR 138 (194)
T ss_dssp EEEEES-SSSEEEEEESSSCCCE----------ECSSSCEECCSSEEECGGGCSEEEECCSCBCS-SSCBCCSCCSSHHH
T ss_pred EEEEec-CCeeEEEEECCCCccC----------CCCCCCCCCCccccCCCCCCCEEEECCeEECC-CCceeccCCcHHHH
Confidence 999873 2233 556654 3342 46677788864 1235689999999999999 99999999999999
Q ss_pred hhhhhhhcCCCCCCCCEEEEEcCccccCCCCC---cccccEEEE
Q 022559 247 EYGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL---FYLVLFILF 287 (295)
Q Consensus 247 fLa~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~---D~~vd~Ii~ 287 (295)
||+.++ +++||+||++|+++.||. |++||.||+
T Consensus 139 ~L~~~~--------~~~igla~~~Q~v~~lP~e~hDi~ld~iiT 174 (194)
T 1sou_A 139 LLKRVK--------GLKVGVAYSFQVFERLPRDAWDIPVDVLVT 174 (194)
T ss_dssp HHHHCC--------SEEEEECCGGGBCSCCCCCSCCCCCSEEEC
T ss_pred HHHhcC--------CCEEEEEchHhccCCCCCCcccccCCEEEE
Confidence 998652 357999999999999996 799999998
No 5
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6
Probab=100.00 E-value=1.1e-37 Score=273.70 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhhcccEEEEeC----CCCcHHHHHHHHHCCCEE
Q 022559 95 WKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNP----DSPQKQVRLLTLSGGKKL 170 (295)
Q Consensus 95 ~Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~~Ak~I~vy~----e~~t~~li~~al~~GK~V 170 (295)
.|++||++++++|++++.+ ..|..|+++|.+++.|++|++|++|+ |++|.++++ |++ |+|
T Consensus 2 ~K~~lR~~~~~~r~~l~~~-------------~~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Evdt~~li~--~~~-k~v 65 (184)
T 1wkc_A 2 TKAELRRRARAAWRRLDLK-------------ALSRAVGAALLPWLRERGFRHILLYHPLPHELNLLPLME--AYP-ARY 65 (184)
T ss_dssp CHHHHHHHHHHHHHTSCHH-------------HHHHHHHHHHHHHHHHHTCCEEECCCCCTTCCCCTTHHH--HSC-CEE
T ss_pred CHHHHHHHHHHHHHcCCHH-------------HHHHHHHHHHHhChhhhcCCEEEEECCCCCCcCHHHHHH--hhc-CCE
Confidence 4999999999999887553 15889999999999999999999997 567899999 888 999
Q ss_pred EEceecCCCCc-EEeeCCCCCCCcccccccccCCccccccccCCC--CCccccEEEEccceeeCCCCCeeecCCchhhhh
Q 022559 171 LTPQPRLRTGF-FSVLDSSMLSPSTINEACTSVGVAKYGKQIGLD--EIIKVDLIVIGSVAVNPKTGARLGKGEGFAELE 247 (295)
Q Consensus 171 ~lP~~~~~~~~-~~~~~~~~l~~g~l~~~~~~~G~~~~geP~~~~--~~~~iDLIIVPgvAFD~~~G~RLGyGgGYYDRf 247 (295)
+||++... .+ |..++ .+. .|.+++.|| ... ...++|||||||||||+ +|+||||||||||||
T Consensus 66 ~lP~~~~~-~m~f~~~~--~L~----------~~~~gi~EP-~~~~~~~~~iDlvlvP~vafD~-~G~RLG~GgGyYDR~ 130 (184)
T 1wkc_A 66 YLPKVAGK-GLTVHPFG--PLA----------PGPFGLLEP-TTPPEDPRVLDLVVVPGLAFDR-EGYRLGHGQGFYDRF 130 (184)
T ss_dssp EEEEEETT-EEEEEESC--CBC-----------------CB-CSCCBCGGGCSEEEECCSEEET-TSCEECCSSCHHHHH
T ss_pred EEeEEeCC-ceEEEEec--ccC----------CCCCCCCCC-CCccCCCCCCCEEEECcEEECC-CCCEeeCCccHHHHH
Confidence 99986323 32 44554 332 466777888 322 34689999999999999 999999999999999
Q ss_pred hhhhhhcCCCCCCCCEEEEEcCccccCCCCC---cccccEEEE
Q 022559 248 YGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL---FYLVLFILF 287 (295)
Q Consensus 248 La~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~---D~~vd~Ii~ 287 (295)
|+.+. +++||+||++|+++.||. |++||.||+
T Consensus 131 L~~~~--------~~~igl~~~~Q~~~~lp~e~hD~~ld~iiT 165 (184)
T 1wkc_A 131 LKEVR--------AATVGVVPQALLFPALPRDPWDVPVDHLAT 165 (184)
T ss_dssp HHHCC--------SEEEEECCGGGEESCCCCCTTCCCCSEEEE
T ss_pred HHhcC--------CCEEEEEchhhccCCCCCccccCccCEEEE
Confidence 98652 357999999999999986 799999998
No 6
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Probab=100.00 E-value=3.8e-37 Score=271.80 Aligned_cols=153 Identities=14% Similarity=0.063 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHhcccccCCCccccCCCCHHHHHHHHHHHhcChhhh-cccEEEEeC----CCCcHHHHHHHHHCCC
Q 022559 94 SWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFR-VAGCVKVNP----DSPQKQVRLLTLSGGK 168 (295)
Q Consensus 94 ~~Kk~LRk~i~~~r~~~~~~~~~~~~~~r~p~f~~S~~I~~~L~~l~~~~-~Ak~I~vy~----e~~t~~li~~al~~GK 168 (295)
+.|++||++++++|++++.+. .. ..|..|+++|.+++.|+ +|++|++|+ |++|.+|++.++++||
T Consensus 26 m~K~~LR~~~~~~R~~l~~~~-----~~-----~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~gk 95 (189)
T 1sbq_A 26 MDKNALRKQILQKRMALSTIE-----KS-----HLDQKINQKLVAFLTPKPCIKTIALYEPIKNEVTFVDFFFEFLKINQ 95 (189)
T ss_dssp CCHHHHHHHHHHHHHHCCHHH-----HH-----HHHHHHHHHHHHHHTTCTTCCEEECCCCCTTSCCCCHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHCCCHHH-----HH-----HHHHHHHHHHHHhHHhHhhCCEEEEECCCCCCCCHHHHHHHHHHcCC
Confidence 459999999999999886542 11 47899999999999999 999999998 6789999999999999
Q ss_pred -EEEEceecCCCCc-EEeeCCCCCCCcccccccccCCccccccccCCCCCccccEEEEccceeeCCCCCeeecCCchhhh
Q 022559 169 -KLLTPQPRLRTGF-FSVLDSSMLSPSTINEACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGFAEL 246 (295)
Q Consensus 169 -~V~lP~~~~~~~~-~~~~~~~~l~~g~l~~~~~~~G~~~~geP~~~~~~~~iDLIIVPgvAFD~~~G~RLGyGgGYYDR 246 (295)
+|+||++.....+ |..+++. +. ...++|||||||||||+ +|+|||||||||||
T Consensus 96 ~~v~lP~~~~~~~m~f~~~~~~---------------------~~---~~~~iDlvlVP~vAfD~-~G~RLG~GgGyYDR 150 (189)
T 1sbq_A 96 IRAVYPKVISDTEIIFIDQETN---------------------TF---EPNQIDCFLIPLVGFNK-DNYRLGFGKGYYDR 150 (189)
T ss_dssp CEEEEEEECSSSCEEEECTTCC---------------------EE---CGGGCCEEEEECSEECT-TCCEECCSSCHHHH
T ss_pred CeEEEeEEccCCceEEEEeCCC---------------------CC---CcccCCEEEECceEECC-CCCEeecCCchHHH
Confidence 9999987422222 3222211 11 23568999999999999 99999999999999
Q ss_pred hhhhhhhcCCCCCCCCEEEEEcCccccCCCCC---cccccEEEEE
Q 022559 247 EYGMLRYMGAIDDSTPVVTSGKCGFCRIFLPL---FYLVLFILFV 288 (295)
Q Consensus 247 fLa~l~~~~~~~~~~~~Vgla~d~Qvvd~LP~---D~~vd~Ii~~ 288 (295)
||+.+. ..+++||+||++|+++ ||. |++||.||++
T Consensus 151 ~La~~~------~~~~~igla~~~Q~v~-lP~e~hDiplD~IiTe 188 (189)
T 1sbq_A 151 YLMQLT------RQQPKIGIAYSFQKGD-FLADPWDVQLDLIIND 188 (189)
T ss_dssp HGGGCC------SCCCEEEEECGGGBCC-CCCCTTSCCCSEEEEC
T ss_pred HHHhcC------CCCCEEEEechHheeC-CCCCcccCcCCEEEcC
Confidence 998653 2357899999999999 996 7999999974
No 7
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=29.92 E-value=73 Score=27.94 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=27.9
Q ss_pred ccccEEEEccceeeCCCCC-eeecCCchhhhhhhh
Q 022559 217 IKVDLIVIGSVAVNPKTGA-RLGKGEGFAELEYGM 250 (295)
Q Consensus 217 ~~iDLIIVPgvAFD~~~G~-RLGyGgGYYDRfLa~ 250 (295)
..+|+.||=+-.-|+ .|+ .+|...++|+..+++
T Consensus 150 l~~DVAlI~a~~aD~-~Gn~~~~~~~~~~~~~~a~ 183 (241)
T 3cdk_A 150 ITGDVAIVKAWKADT-MGNLIFRKTARNFNPIAAM 183 (241)
T ss_dssp CCEEEEEEEEEEEET-TCCEECCGGGCTTHHHHHH
T ss_pred CCCcEEEEEeccCCC-CCeEEEecCchhhHHHHHH
Confidence 368999999999999 997 888888899976653
No 8
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=26.20 E-value=69 Score=28.16 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=27.6
Q ss_pred CccccEEEEccceeeCCCCC-eeecCCchhhhhhhh
Q 022559 216 IIKVDLIVIGSVAVNPKTGA-RLGKGEGFAELEYGM 250 (295)
Q Consensus 216 ~~~iDLIIVPgvAFD~~~G~-RLGyGgGYYDRfLa~ 250 (295)
...+|+.||-+-..|+ .|+ .++...++|+..+++
T Consensus 149 a~~~DvAli~a~~aD~-~GN~~~~~~~~~~~~~~a~ 183 (235)
T 3rrl_A 149 AITGDYGLIKAYKSDT-LGNLVFRKTARNFNPLCAM 183 (235)
T ss_dssp CCCEEEEEEECSEEET-TCCEECCGGGCTTHHHHHH
T ss_pred CCCCeEEEEEeeecCC-CceEEEecCcccccHHHHH
Confidence 3468999999999999 997 666667788987664
No 9
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme, protein-DNA complex, hydrolase/DNA complex; HET: DNA; 1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A* 1es8_A
Probab=23.55 E-value=96 Score=27.42 Aligned_cols=31 Identities=10% Similarity=-0.016 Sum_probs=25.6
Q ss_pred ccEEEEccceeeCCCCCeeecCCchhhhhhhhhhh
Q 022559 219 VDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRY 253 (295)
Q Consensus 219 iDLIIVPgvAFD~~~G~RLGyGgGYYDRfLa~l~~ 253 (295)
+-++|||.-.+-. .++-|=+||.+++..|..
T Consensus 124 ~GViIvptk~Lqk----~~ssGv~yyEq~l~~L~~ 154 (223)
T 1dfm_A 124 MKVAIIITKGHMF----PASNSSLYYEQAQNQLNS 154 (223)
T ss_dssp CCEEEEEEECTTS----CCSTTBCCHHHHHHHHHH
T ss_pred CcEEEEEcHHHHH----HHhcCchhHHHHHHHhhh
Confidence 3679999887765 489999999999887765
No 10
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=23.25 E-value=64 Score=27.81 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=28.4
Q ss_pred ccccEEEEccceeeCCCCC-eeecCCchhhhhhhh
Q 022559 217 IKVDLIVIGSVAVNPKTGA-RLGKGEGFAELEYGM 250 (295)
Q Consensus 217 ~~iDLIIVPgvAFD~~~G~-RLGyGgGYYDRfLa~ 250 (295)
..+|+.||=+-.-|+ .|+ .+|...++||..+++
T Consensus 147 l~~DVAli~a~~aD~-~Gn~~~~~~~~~~~~~~a~ 180 (220)
T 1k6d_A 147 LRADLALIRAHRCDT-LGNLTYQLSARNFNPLIAL 180 (220)
T ss_dssp CCEEEEEEEEEEEET-TCCEECCHHHHTTHHHHHH
T ss_pred CCCcEEEEEeecCCC-CceEEEecCCccccHHHHH
Confidence 468999999999999 997 888788899998764
Done!