BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022560
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GOY|A Chain A, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|B Chain B, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|C Chain C, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|D Chain D, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|E Chain E, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|F Chain F, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|G Chain G, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|H Chain H, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
Length = 275
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 119/155 (76%), Gaps = 3/155 (1%)
Query: 1 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTR 60
+ PD ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+DQSPGTR
Sbjct: 112 LSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTR 171
Query: 61 SEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGC 120
S++ V+++D F E L K+NP++++ ++W ++R +++P NSLH +GYISIGC
Sbjct: 172 SQVAVLEIDGAFSTPEK---PLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGC 228
Query: 121 EPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 155
EPCTRPVLP QHEREGRWWWE+A KECGLH GN+
Sbjct: 229 EPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL 263
>pdb|2OQ2|A Chain A, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|B Chain B, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|C Chain C, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|D Chain D, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
Length = 261
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 3 PDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTR 60
PD E +A SK +E + + KV P RA K L A TG+RK Q R
Sbjct: 109 PDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSA-R 167
Query: 61 SEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGC 120
S++ ++++D + ++K NP+ N + ++ +VP N L GY SIG
Sbjct: 168 SQLSIIEIDEL--------NGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGD 219
Query: 121 EPCTRPVLPGQHEREGRWWWEDAKAK-ECGLHKGN 154
T+PV G+ ER GRW KAK ECG+H+ +
Sbjct: 220 YHSTQPVKEGEDERAGRW---KGKAKTECGIHEAS 251
>pdb|2O8V|A Chain A, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 252
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 23 DGHQECCRVRKVRPLRRALKGLRA--WITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVG 80
+G ++ + KV P+ RALK L A W G R++QS G+R+ +PV+ ++ GV
Sbjct: 126 EGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVL-------AIQRGVF 177
Query: 81 SLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWW 139
++ P+ + I+ +L+ + + L +GY+S+G TR PG E E R++
Sbjct: 178 KVL---PIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFF 233
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
L+ YAPWC C+ +E Y L K G V + D + + ++ FPTI F
Sbjct: 29 LIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLV-IAKMDATANDITNDQYKVEGFPTIYF 87
Query: 267 FPKHSSK-PIKYPSERRDVDSLMAFVD 292
P K PIK+ RD++ L F+D
Sbjct: 88 APSGDKKNPIKFEGGNRDLEHLSKFID 114
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265
WLV YAPWC CQ + + + A L + VKVG AD Q + +Q FPTI
Sbjct: 38 WLVEFYAPWCGHCQRLTPEWKKAATALK-DVVKVGAVNADKHQSLGGQYGVQ--GFPTIK 94
Query: 266 FFPKHSSKPIKYPSERRDVDSLMAFVDALR 295
F + +KP Y R + A + ALR
Sbjct: 95 IFGANKNKPEDYQGGRTGEAIVDAALSALR 124
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 178 DIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGV 237
+IF +Q+ G + ++ ++ LV+ YAPWC C+ + +Y ELAD A
Sbjct: 351 EIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATS 410
Query: 238 KVGKFRADGDQKEYAKQKLQLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFV 291
V A D E + + + +PTI+ +P S+ + Y R +DSL F+
Sbjct: 411 DV--LIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRS-LDSLFDFI 462
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
L +APWC C+ M YV+ A+ L + + + +Q + + FP++
Sbjct: 35 LAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIP--GFPSLKI 92
Query: 267 F 267
F
Sbjct: 93 F 93
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV YAPWC C+A+ Y + A KL G ++ + D ++ Q+ + +PTI F
Sbjct: 28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKF 87
Query: 267 FPKHSSKPIKYPSERRDVDSLM 288
F + K + R+ D ++
Sbjct: 88 FRNGDTASPKEYTAGREADDIV 109
>pdb|1SUR|A Chain A, Phospho-Adenylyl-Sulfate Reductase
Length = 215
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
Query: 23 DGHQECCRVRKVRPLRRALKGLRA--WITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVG 80
+G ++ + KV P+ RALK L A W G R++QS G+R+ +PV+ ++ GV
Sbjct: 125 EGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVL-------AIQRGVF 176
Query: 81 SLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIG 119
++ P+ + I+ +L+ + + L +GY+S+G
Sbjct: 177 KVL---PIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVG 212
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 199 LDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQ 257
+++ + L+ YAPWC C+ +E Y EL +KL+ + + + K A + +
Sbjct: 41 VNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND---VPSPYE 97
Query: 258 LGSFPTILFFPKHSS-KPIKYPSERRDVDSLMAFVDALR 295
+ FPTI F P + P KY R L F+ L+
Sbjct: 98 VRGFPTIYFSPANKKLNPKKYEGGRE----LSDFISYLQ 132
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 199 LDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQ 257
+++ + L+ YAPWC C+ +E Y EL +KL+ + + + K A + +
Sbjct: 366 VNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND---VPSPYE 422
Query: 258 LGSFPTILFFPKHSS-KPIKYPSERRDVD 285
+ FPTI F P + P KY R D
Sbjct: 423 VRGFPTIYFSPANKKLNPKKYEGGRELSD 451
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADK----LAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+ YAPWC C+ + ++ EL+ K LA GVK+ + ++ +K ++ +P
Sbjct: 27 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLA--GVKIAEVDCTAERNICSKYSVR--GYP 82
Query: 263 TILFFPKHSSKPIKYPSERRDVDSLMAFV 291
T+L F K + S RD+DSL FV
Sbjct: 83 TLLLF--RGGKKVSEHSGGRDLDSLHRFV 109
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADK----LAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+ YAPWC C+ + ++ EL+ K LA GVK+ + ++ +K ++ +P
Sbjct: 25 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLA--GVKIAEVDCTAERNICSKYSVR--GYP 80
Query: 263 TILFFPKHSSKPIKYPSERRDVDSLMAFV 291
T+L F K + S RD+DSL FV
Sbjct: 81 TLLLF--RGGKKVSEHSGGRDLDSLHRFV 107
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 174 EAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA 233
E + D+ N ++V+L + L + E W+V Y+PW Q + + +A L
Sbjct: 535 EFIEDLRNP-SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT 593
Query: 234 GNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE---RRDVDSL 287
G + VG G + Q+ + +P I F+P+ SSK +Y S RD SL
Sbjct: 594 G-LINVGSVDC-GQYHSFCTQE-NVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSL 647
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+EPWLV +APW +A+ + + L G +KVG D E + ++P
Sbjct: 455 KEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ-LKVGTL--DCTIHEGLCNMYNIQAYP 511
Query: 263 TILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 295
T + F + S I + ++ F++ LR
Sbjct: 512 TTVVFNQSS---IHEYEGHHSAEQILEFIEDLR 541
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADK----LAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+ YAPWC C+ + ++ EL+ K LA GVK+ + ++ +K ++ +P
Sbjct: 20 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLA--GVKIAEVDCTAERNICSKYSVR--GYP 75
Query: 263 TILFFPKHSSKPIKYPSERRDVDSLMAFV 291
T+L F K + S RD+DSL FV
Sbjct: 76 TLLLF--RGGKKVSEHSGGRDLDSLHRFV 102
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 184 NLVTLNRTGMEN--LARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 241
L+T G++ LAR + P LV +APWC C+ M + A LAG V++ K
Sbjct: 43 GLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAK 101
Query: 242 FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
+ ++Q P + F H + + + R L+ FV
Sbjct: 102 IDTQAHPAVAGRHRIQ--GIPAFILF--HKGRELARAAGARPASELVGFV 147
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV YAPWC C+ + ++ + A +L G V+V D ++ + K + FPT++
Sbjct: 39 LVEFYAPWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCDLNKNKALCAKYDVNGFPTLMV 97
Query: 267 F--PKHS-SKPI 275
F PK SKPI
Sbjct: 98 FRPPKIDLSKPI 109
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 180 FNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVK- 238
S+ VT+ N LD ++ L+ YAPWC C+A+ Y EL A + K
Sbjct: 3 LGSEGPVTVVVAKNYNEIVLDDTKD-VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 239 -VGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS-SKPIKYPSERRDVDSLMAFV 291
V + D + ++ FPTI +P + +P+ Y S R V+ L+ F+
Sbjct: 62 RVVIAKVDATANDVPD---EIQGFPTIKLYPAGAKGQPVTY-SGSRTVEDLIKFI 112
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 188 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG---NGVKVGKFRA 244
+ EN+ + + + LV YA WC+F Q + + E +D + N +V R
Sbjct: 7 ITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARV 66
Query: 245 DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 295
D DQ Q+ ++ +PT+ F +Y +R S+ A D +R
Sbjct: 67 DCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQR----SVKALADYIR 113
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 186 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 245
VTL+ T +N + + + LV YAPWC C+ + Y + A +L+ + + D
Sbjct: 8 VTLSLT-KDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 66
Query: 246 GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKY--PSERRDVDSLM 288
++ ++ + +PT+ F K +P Y P E+ + M
Sbjct: 67 ATEQTDLAKRFDVSGYPTLKIFRK--GRPFDYNGPREKYGIVDYM 109
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-DGDQKEYAKQKLQLGSF 261
++ W+V YAPWC C+ +E + A ++ K A D + + + F
Sbjct: 25 EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF 84
Query: 262 PTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
PTI F K S P+ Y R D + +D
Sbjct: 85 PTIKIFQKGES-PVDYDGGRTRSDIVSRALD 114
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P +V +APWC C+ + ELA + +G K+ ++ + D+ + + S PT+
Sbjct: 20 PVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNIRSIPTV 76
Query: 265 LFF 267
LFF
Sbjct: 77 LFF 79
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P +V +APWC C+ + ELA + +G K+ ++ + D+ + + S PT+
Sbjct: 19 PVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNIRSIPTV 75
Query: 265 LFF 267
LFF
Sbjct: 76 LFF 78
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 25/63 (39%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
L+ YAPWC C+ Y ++A L N + + D K + +PTI
Sbjct: 38 LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKI 97
Query: 267 FPK 269
K
Sbjct: 98 LKK 100
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 186 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 245
VTL T EN + + + LV YAPWC C+ + Y + A +L+ + + D
Sbjct: 131 VTLVLT-KENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 189
Query: 246 GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKY--PSERRDVDSLM 288
+ ++ + +PT+ F K +P Y P E+ + M
Sbjct: 190 ATAETDLAKRFDVSGYPTLKIFRK--GRPYDYNGPREKYGIVDYM 232
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 173 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 232
SE ++ ++ LN +N ++ L+ YAPWC C+ Y ++A+ L
Sbjct: 5 SEDDLEVKEENGVLVLNDANFDNFV---ADKDTVLLEFYAPWCGHCKQFAPEYEKIANIL 61
Query: 233 AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 269
+ + D + + +PTI K
Sbjct: 62 KDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKK 98
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
++ +A WC C+ + + +++D AG+ KVG ++ D D++ Q++ + + PT +F
Sbjct: 37 VIDFWATWCGPCKMIGPVFEKISDTPAGD--KVGFYKVDVDEQSQIAQEVGIRAMPTFVF 94
Query: 267 F 267
F
Sbjct: 95 F 95
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265
V YAPWC C+ + + +L + + + + K + ++ E K + SFPT+
Sbjct: 271 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVK----VHSFPTLK 326
Query: 266 FFPKHSSKPIKYPSERRDVDSLMAFVDA 293
FFP + + + + R +D F+++
Sbjct: 327 FFPASADRTVIDYNGERTLDGFKKFLES 354
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265
V YAPWC C+ + + +L + + + + K + ++ E K + SFPT+
Sbjct: 29 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVK----VHSFPTLK 84
Query: 266 FFPKHSSKPIKYPSERRDVDSLMAFVD 292
FFP + + + + R +D F++
Sbjct: 85 FFPASADRTVIDYNGERTLDGFKKFLE 111
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 198 RLDHRQ--EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK 255
+L+ RQ +P +++ WCQ C+ M+ ++ E+A ++ G+ ++ A+ +K A +
Sbjct: 10 QLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGD-IRFAYMDAEDAEKTMA--E 66
Query: 256 LQLGSFPTILFF 267
L + + P++ F
Sbjct: 67 LNIRTLPSLALF 78
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
E W V Y+P C C + ++ E A ++ G +++G GD + + K + S+P+
Sbjct: 115 ELWFVNFYSPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNC-GDDRMLCRMK-GVNSYPS 171
Query: 264 ILFFPKHSSKPIKYPSERRDVDSLMAFV 291
+ F + +KY +R +SL+AF
Sbjct: 172 LFIF-RSGMAAVKYNGDRSK-ESLVAFA 197
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 186 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 245
VTL T EN + + LV +A WC C E Y ++A+K G V G+ D
Sbjct: 5 VTLVLTE-ENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAV-FGRLNVD 62
Query: 246 GDQKEYAKQKLQLGSFPTILFF 267
+QK K + + PT L F
Sbjct: 63 ENQK--IADKYSVLNIPTTLIF 82
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P +V +APWC + + ELA + +G K+ ++ + D+ + + S PT+
Sbjct: 20 PVMVDFWAPWCGPSKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNIRSIPTV 76
Query: 265 LFF 267
LFF
Sbjct: 77 LFF 79
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 253
E L +L P ++ +APWC C++ + E A + AG KV + + + +
Sbjct: 46 ETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAG---KVRFVKVNTEAEPALS 102
Query: 254 QKLQLGSFPTILFF 267
+ ++ S PTI +
Sbjct: 103 TRFRIRSIPTIXLY 116
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265
W++ YAPWC CQ ++ + A+ G ++V + D ++ + + + PTI
Sbjct: 25 WMIEFYAPWCPACQNLQPEWESFAE--WGEDLEVNIAKVDVTEQPGLSGRFIINALPTIY 82
Query: 266 FFPKHSSKPIKYPSERRDVDSLMA 289
+ + P ++D + ++
Sbjct: 83 HCKDGEFRRYQGPRTKKDFINFIS 106
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LVVL +A WC C+ + VEL+ + A N V + + D D+ E + + S PT
Sbjct: 22 LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVL---KVDVDECEDIAMEYNISSMPTF 78
Query: 265 LFF 267
+F
Sbjct: 79 VFL 81
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LVVL +A WC C+ + VEL+ + A N V + D D+ E + + S PT
Sbjct: 27 LVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDECEDIAMEYNISSMPTF 83
Query: 265 LFF 267
+F
Sbjct: 84 VFL 86
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 180 FNSQ-----NLVTLNRTG-MENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA 233
F SQ L+ L + G +E+L H+ + +V +A WC C+ + + EL++K
Sbjct: 5 FTSQLVIMSELIELKQDGDLESLLE-QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD 63
Query: 234 GNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265
VKV D D+ E +K + + PT +
Sbjct: 64 AIFVKV-----DVDKLEETARKYNISAMPTFI 90
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265
W+V YAPWC CQ + LA + G V+ GK D QK + ++P++
Sbjct: 24 WVVDFYAPWCGPCQNFAPEFELLARMIKGK-VRAGK--VDCQAYPQTCQKAGIKAYPSVK 80
Query: 266 FFPKHSSKPIKYPSE--RRDVDSLMAFV 291
+ +K + + RD ++ A +
Sbjct: 81 LYQYERAKKSIWEEQINSRDAKTIAALI 108
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 185 LVTLNRTG-MENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 243
L+ L + G +E+L H+ + +V +A WC C+ + + EL++K VKV
Sbjct: 6 LIELKQDGDLESLLE-QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKV---- 60
Query: 244 ADGDQKEYAKQKLQLGSFPTIL 265
D D+ E +K + + PT +
Sbjct: 61 -DVDKLEETARKYNISAMPTFI 81
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 187 TLNRTGMENLARL----DHRQE-------PWLVVLYAPWCQFCQAMEGSYVELADKLAGN 235
T++ T E L ++ +H +E P +V YA WC C+ + EL+ + AG
Sbjct: 24 TIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG- 82
Query: 236 GVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 268
K+ ++ + D++ + + S PTI F P
Sbjct: 83 --KIYIYKVNVDKEPELARDFGIQSIPTIWFVP 113
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 193 MENLARLDHRQEPWLVV-LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEY 251
E L RL + + LVV +APW C M ELA +L V K A+G +
Sbjct: 23 FEELLRL--KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPE-- 76
Query: 252 AKQKLQLGSFPTILFFPKHSSK 273
+K ++ S PT LFF K+S K
Sbjct: 77 VSEKYEISSVPTFLFF-KNSQK 97
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 207 LVVLY--APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
++VLY A WCQ C M+ + ++ K G + + + D D+ E +K + S PTI
Sbjct: 44 VIVLYFFAKWCQAC-TMQSTEMDKLQKYYGKRIYL--LKVDLDKNESLARKFSVKSLPTI 100
Query: 265 LFF 267
+
Sbjct: 101 ILL 103
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 181 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 240
+S+ T+ T + +P LV +A WC C+ + E+A + A + + V
Sbjct: 8 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD-LTVA 66
Query: 241 KFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIK 276
K D D + Q+ S PT++ F +P+K
Sbjct: 67 KL--DVDTNPETARNFQVVSIPTLILF--KDGQPVK 98
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 193 MENLARLDHRQEPWLVV-LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEY 251
E L RL + + LVV +APW C M ELA +L V K A+G +
Sbjct: 29 FEELLRL--KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPE-- 82
Query: 252 AKQKLQLGSFPTILFFPKHSSK 273
+K ++ S PT LFF K+S K
Sbjct: 83 VSEKYEISSVPTFLFF-KNSQK 103
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 181 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 240
+S+ T+ T + +P LV +A WC C+ + E+A + A + + V
Sbjct: 3 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD-LTVA 61
Query: 241 KFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIK 276
K D D + Q+ S PT++ F +P+K
Sbjct: 62 KL--DVDTNPETARNFQVVSIPTLILF--KDGQPVK 93
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEG---SYVELADKLAGNGVKVG 240
N + N A ++ + +P ++ LYA WC C+ E S ++ LA +
Sbjct: 9 NFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQA 68
Query: 241 KFRADGDQKEYAKQKLQLGSFPTILFF 267
A+ Q + L + PTILFF
Sbjct: 69 NVTANDAQDVALLKHLNVLGLPTILFF 95
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEG---SYVELADKLAGNGVKVG 240
N + N A ++ + +P ++ LYA WC C+ E S ++ LA +
Sbjct: 12 NFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQA 71
Query: 241 KFRADGDQKEYAKQKLQLGSFPTILFF 267
A+ Q + L + PTILFF
Sbjct: 72 NVTANDAQDVALLKHLNVLGLPTILFF 98
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
+P +V YA WC C+ + ELA + G V ++ D ++++ + S P+
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIV---IYKVDTEKEQELAGAFGIRSIPS 95
Query: 264 ILFFP 268
ILF P
Sbjct: 96 ILFIP 100
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA 244
+VT ++ E + L + +V +A WC C+ + + +K A ++
Sbjct: 1 MVTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMI----APMIEKFAEQYSDAAFYKL 56
Query: 245 DGDQKEYAKQKLQLGSFPTILFF 267
D D+ QK ++ S PT++F+
Sbjct: 57 DVDEVSDVAQKAEVSSMPTLIFY 79
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA 244
+VT ++ E + L + +V +A WC C+ + + +K A ++
Sbjct: 8 MVTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMI----APMIEKFAEQYSDAAFYKL 63
Query: 245 DGDQKEYAKQKLQLGSFPTILFF 267
D D+ QK ++ S PT++F+
Sbjct: 64 DVDEVSDVAQKAEVSSMPTLIFY 86
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
+P +V YA WC C+ + EL+ + AG K+ ++ + D++ + + PT
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQGIPT 108
Query: 264 ILFFP 268
I F P
Sbjct: 109 IWFVP 113
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 200 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 259
D R + LV L+A WC C+ + EL KL+G +V D E K L+
Sbjct: 57 DFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEA 116
Query: 260 SFPTILFFPKHSSK 273
+ + +F +K
Sbjct: 117 NLTRLGYFNDQKAK 130
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 198 RLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ 257
+++ ++P +V Y+P C +C+A E + E A + + V G R + + +K
Sbjct: 19 QVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAV-FG--RINIATNPWTAEKYG 75
Query: 258 LGSFPTILFF 267
+ PT FF
Sbjct: 76 VQGTPTFKFF 85
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 241
S+ ++T+ E + + ++P LV +A WC CQ M + LA + +KV K
Sbjct: 6 SKGVITITDAEFE--SEVLKAEQPVLVYFWASWCGPCQLM-SPLINLAANTYSDRLKVVK 62
Query: 242 FRADGDQKEYAKQKLQ 257
D + K K++
Sbjct: 63 LEIDPNPTTVKKYKVE 78
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + ELA G K + D D+ K ++ S PT++
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEG---KADILKLDVDENPSTAAKYEVMSIPTLIV 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + ELA G K + D D+ K ++ S PT++
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEG---KADILKLDVDENPSTAAKYEVMSIPTLIV 79
Query: 267 F 267
F
Sbjct: 80 F 80
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +APWC C+ + ELA AG +KV K D A+ ++ S PT++
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGR-LKVVKVNVDEHPGLAARYGVR--SVPTLVL 110
Query: 267 F 267
F
Sbjct: 111 F 111
>pdb|3FWK|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase
pdb|3G59|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Atp
pdb|3G5A|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|B Chain B, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|C Chain C, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|D Chain D, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|E Chain E, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|F Chain F, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G6K|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|B Chain B, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|C Chain C, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|D Chain D, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|E Chain E, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|F Chain F, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
Length = 308
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 18 FSFYEDGHQEC-CRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVD---PVFE 73
S YE +C + +A + G R G + P+ + D P F
Sbjct: 134 LSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTDPFGEHLK-PIQKTDANWPDFY 192
Query: 74 GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHE 133
L+ L+ WN +AN IW+FL + PI L+ G+ S+G LP H
Sbjct: 193 RLQ----PLLHWN-LAN-----IWSFLLYSNEPICELYRYGFTSLG---NVEETLPNPHL 239
Query: 134 REGR 137
R+ +
Sbjct: 240 RKDK 243
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 189 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 241
++T E L R ++ W+V +A W CQ+ Y +L+ K G+ GK
Sbjct: 14 DKTIDEELER--DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGK 64
>pdb|4HCN|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Ubiquitin
pdb|4HCP|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Nedd8
Length = 255
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 72 FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPIN 108
++ L GG PVA + N+I+ + DVPI+
Sbjct: 66 YKELTGGADPFALMTPVAGLSANNIFKLMTEKDVPID 102
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LVV+ YA WC C+ + EL+ ++ V + D D+ E Q Q+ PT
Sbjct: 22 LVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFLKVDVDECEDIAQDNQIACMPTF 77
Query: 265 LFF 267
LF
Sbjct: 78 LFM 80
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPT 263
P LV +APWC C+ + + D++AG K+ + + D+ + + S PT
Sbjct: 21 PVLVDFWAPWCGPCRII----APVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPT 76
Query: 264 ILFF 267
I+ F
Sbjct: 77 IMVF 80
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +APWC C+ + Y A +L G V + D K + +PT+
Sbjct: 25 LVEFFAPWCGHCKRLAPEYEAAATRLKG---IVPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Query: 267 F 267
F
Sbjct: 82 F 82
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC +C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCVWCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 FPKHSSKPIKYPSERRDVDSLMAFVDA 293
F K + + L F+DA
Sbjct: 81 FKNGEVAATKVGALSK--GQLKEFLDA 105
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + S PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRSIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+A + G K+ + D D+ + ++ S PT++
Sbjct: 23 LVDFWAEWCAPCRXIAPILEEIAKEYEG---KLLVAKLDVDENPKTAXRYRVXSIPTVIL 79
Query: 267 F 267
F
Sbjct: 80 F 80
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+A + G K+ + D D+ + ++ S PT++
Sbjct: 22 LVDFWAEWCAPCRXIAPILEEIAKEYEG---KLLVAKLDVDENPKTAXRYRVXSIPTVIL 78
Query: 267 F 267
F
Sbjct: 79 F 79
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
+P LV +APWC C+ + ELA + G KV + + D+ + + S PT
Sbjct: 20 KPVLVDFWAPWCGPCRMIAPIIEELAKEYEG---KVKVVKVNVDENPNTAAQYGIRSIPT 76
Query: 264 ILFF 267
+L F
Sbjct: 77 LLLF 80
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 195 NLARLDHRQEPWLVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA 252
+L +L + + L+V+ +A WC C+ + LA ++ +V + D DQ E A
Sbjct: 9 DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP----EVEFAKVDVDQNEEA 64
Query: 253 KQKLQLGSFPTILFF 267
K + + PT +F
Sbjct: 65 AAKYSVTAMPTFVFI 79
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 241
S +V N T L R+ LV +A WC CQ + ++ +A V
Sbjct: 2 SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLG----QILPSIAEANKDVTF 57
Query: 242 FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIK 276
+ D D+ A + S P LFF K IK
Sbjct: 58 IKVDVDKNGNAADAYGVSSIPA-LFFVKKEGNEIK 91
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGHCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 195 NLARLDHRQEPWLVVLYAPWCQFCQAMEG---SYVELADKLAGNGVKVGKFRADGDQKEY 251
N A ++ + +P ++ LYA WC + E S ++ LA + A+ Q
Sbjct: 23 NQALVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVA 82
Query: 252 AKQKLQLGSFPTILFF 267
+ L + PTILFF
Sbjct: 83 LLKHLNVLGLPTILFF 98
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKLIASILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 FPKHSSKPIKYPSERRDVDSLMAFVDA 293
F K + + L F+DA
Sbjct: 81 FKNGEVAATKVGALSK--GQLKEFLDA 105
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCEMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 FPKHSSKPIKYPSERRDVDSLMAFVDA 293
F K + + L F+DA
Sbjct: 81 FKNGEVAATKVGALSK--GQLKCFLDA 105
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILEEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G + V K DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNI--DQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 34 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 90
Query: 267 F 267
F
Sbjct: 91 F 91
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
LV +A WC C+ + E+AD G + V K DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADDYQGK-LTVAKLNI--DQNPGTAPKYGIRGIPTLLL 80
Query: 267 F 267
F
Sbjct: 81 F 81
>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
pdb|3L7O|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
Length = 225
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 67 QVDPVFEGLEGGVGSLVKWNPVANVKGNDIW 97
+VDP F G++GG G+L+ V + + IW
Sbjct: 86 EVDPNFNGIKGGGGALLMEKIVGTLTKDYIW 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,593,420
Number of Sequences: 62578
Number of extensions: 342714
Number of successful extensions: 757
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 96
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)