Query 022560
Match_columns 295
No_of_seqs 435 out of 2690
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02309 5'-adenylylsulfate re 100.0 5.3E-75 1.2E-79 548.2 29.5 289 1-295 168-457 (457)
2 TIGR00424 APS_reduc 5'-adenyly 100.0 1.6E-74 3.6E-79 545.0 29.1 291 1-295 173-463 (463)
3 KOG0189 Phosphoadenosine phosp 100.0 3.5E-47 7.5E-52 313.9 9.3 148 1-159 105-254 (261)
4 TIGR02057 PAPS_reductase phosp 100.0 1.1E-42 2.4E-47 303.6 12.7 133 7-151 92-226 (226)
5 TIGR02055 APS_reductase thiore 100.0 2.2E-42 4.7E-47 294.9 12.3 140 2-150 52-191 (191)
6 TIGR00434 cysH phosophoadenyly 100.0 3.8E-38 8.3E-43 273.4 12.9 132 9-152 79-212 (212)
7 COG0175 CysH 3'-phosphoadenosi 100.0 2.4E-37 5.1E-42 275.6 10.1 136 13-157 108-247 (261)
8 PRK02090 phosphoadenosine phos 100.0 3.1E-36 6.6E-41 266.1 11.6 119 23-154 121-239 (241)
9 PRK12563 sulfate adenylyltrans 100.0 7.4E-29 1.6E-33 223.2 10.3 93 21-114 113-222 (312)
10 TIGR02039 CysD sulfate adenyly 99.9 6.6E-27 1.4E-31 209.9 9.2 121 15-137 90-275 (294)
11 PRK05253 sulfate adenylyltrans 99.9 9.6E-26 2.1E-30 204.0 9.1 114 23-137 105-282 (301)
12 PRK08557 hypothetical protein; 99.9 6.6E-25 1.4E-29 206.2 9.4 108 10-128 247-359 (417)
13 PF01507 PAPS_reduct: Phosphoa 99.9 2.8E-25 6.1E-30 186.1 6.2 92 27-126 81-174 (174)
14 PRK13794 hypothetical protein; 99.9 6.6E-24 1.4E-28 203.7 9.4 108 9-127 313-424 (479)
15 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.3E-22 2.8E-27 158.5 12.8 109 179-291 5-113 (113)
16 PRK13795 hypothetical protein; 99.9 1.7E-22 3.7E-27 200.3 8.6 97 23-127 320-420 (636)
17 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.2E-21 4.9E-26 148.5 12.7 99 184-290 2-100 (101)
18 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2.8E-21 6E-26 148.6 12.5 102 184-291 2-104 (104)
19 cd02996 PDI_a_ERp44 PDIa famil 99.9 5.3E-21 1.1E-25 148.3 12.6 102 184-291 2-108 (108)
20 KOG0910 Thioredoxin-like prote 99.9 3.2E-21 7E-26 154.4 10.3 104 184-294 44-147 (150)
21 cd02993 PDI_a_APS_reductase PD 99.8 1.4E-20 3E-25 146.4 12.6 108 184-291 2-109 (109)
22 PF00085 Thioredoxin: Thioredo 99.8 1.9E-20 4.2E-25 142.8 13.2 103 185-294 1-103 (103)
23 PRK08576 hypothetical protein; 99.8 2.2E-21 4.8E-26 182.9 8.8 96 24-126 309-406 (438)
24 cd03065 PDI_b_Calsequestrin_N 99.8 1.6E-20 3.4E-25 147.9 11.9 105 182-294 8-118 (120)
25 cd02994 PDI_a_TMX PDIa family, 99.8 3.1E-20 6.8E-25 142.0 12.9 100 184-293 2-101 (101)
26 cd02963 TRX_DnaJ TRX domain, D 99.8 3.4E-20 7.3E-25 144.7 11.2 105 186-294 7-111 (111)
27 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.1E-19 2.5E-24 140.6 12.5 102 185-292 2-109 (109)
28 COG3118 Thioredoxin domain-con 99.8 1.2E-19 2.5E-24 160.1 12.5 106 184-294 24-129 (304)
29 cd03001 PDI_a_P5 PDIa family, 99.8 3.7E-19 8.1E-24 136.1 13.1 101 185-291 2-102 (103)
30 cd02999 PDI_a_ERp44_like PDIa 99.8 2.2E-19 4.7E-24 137.5 10.8 92 192-291 8-100 (100)
31 cd03005 PDI_a_ERp46 PDIa famil 99.8 3.5E-19 7.6E-24 136.0 11.6 99 185-291 2-102 (102)
32 PRK10996 thioredoxin 2; Provis 99.8 2E-18 4.3E-23 140.0 16.2 105 183-295 35-139 (139)
33 cd02954 DIM1 Dim1 family; Dim1 99.8 7.1E-19 1.5E-23 136.7 12.6 79 190-272 2-80 (114)
34 PHA02278 thioredoxin-like prot 99.8 5.2E-19 1.1E-23 135.9 11.3 94 190-290 4-100 (103)
35 cd02956 ybbN ybbN protein fami 99.8 7.8E-19 1.7E-23 132.9 12.0 95 192-292 2-96 (96)
36 PRK09381 trxA thioredoxin; Pro 99.8 1.6E-18 3.5E-23 134.4 13.6 106 182-294 2-107 (109)
37 PTZ00443 Thioredoxin domain-co 99.8 9.9E-19 2.2E-23 152.0 13.7 108 182-294 29-138 (224)
38 cd02948 TRX_NDPK TRX domain, T 99.8 9.8E-19 2.1E-23 134.3 11.9 98 188-294 5-102 (102)
39 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2E-18 4.4E-23 132.0 12.2 102 184-291 1-104 (104)
40 cd02985 TRX_CDSP32 TRX family, 99.8 2E-18 4.4E-23 132.8 12.0 98 189-293 2-101 (103)
41 cd02998 PDI_a_ERp38 PDIa famil 99.8 2.6E-18 5.7E-23 131.5 12.1 102 185-291 2-105 (105)
42 cd02997 PDI_a_PDIR PDIa family 99.8 2.5E-18 5.4E-23 131.6 12.0 101 184-291 1-104 (104)
43 KOG0907 Thioredoxin [Posttrans 99.8 1.5E-18 3.2E-23 133.7 10.6 86 202-294 20-105 (106)
44 cd02962 TMX2 TMX2 family; comp 99.8 2.3E-18 5.1E-23 141.1 12.3 106 182-291 27-148 (152)
45 TIGR01126 pdi_dom protein disu 99.8 4E-18 8.8E-23 129.8 12.2 100 188-294 1-101 (102)
46 KOG0190 Protein disulfide isom 99.8 2.2E-18 4.8E-23 162.9 10.6 107 181-294 23-131 (493)
47 cd03000 PDI_a_TMX3 PDIa family 99.8 9.6E-18 2.1E-22 129.1 11.8 95 191-294 7-103 (104)
48 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1E-17 2.2E-22 130.6 11.0 101 184-294 2-115 (116)
49 cd02965 HyaE HyaE family; HyaE 99.7 1.2E-17 2.7E-22 128.9 11.2 98 183-288 10-109 (111)
50 cd02957 Phd_like Phosducin (Ph 99.7 1.3E-17 2.8E-22 130.5 11.0 103 183-291 4-112 (113)
51 cd02961 PDI_a_family Protein D 99.7 2.6E-17 5.7E-22 124.2 11.3 99 187-291 2-101 (101)
52 cd02989 Phd_like_TxnDC9 Phosdu 99.7 3.6E-17 7.9E-22 128.0 12.3 102 183-291 4-112 (113)
53 PLN00410 U5 snRNP protein, DIM 99.7 4.3E-17 9.3E-22 131.4 12.4 102 189-294 10-119 (142)
54 cd02986 DLP Dim1 family, Dim1- 99.7 5.3E-17 1.1E-21 125.4 12.3 100 191-294 3-110 (114)
55 TIGR01068 thioredoxin thioredo 99.7 1E-16 2.2E-21 121.5 12.5 100 188-294 1-100 (101)
56 cd02953 DsbDgamma DsbD gamma f 99.7 5.1E-17 1.1E-21 124.9 10.9 96 191-292 2-104 (104)
57 KOG0190 Protein disulfide isom 99.7 1.9E-17 4.2E-22 156.6 10.3 119 168-293 351-471 (493)
58 cd02950 TxlA TRX-like protein 99.7 1.4E-16 3.1E-21 129.6 12.9 99 190-294 10-109 (142)
59 cd01713 PAPS_reductase This do 99.7 1.9E-17 4.2E-22 137.5 7.6 89 23-119 83-173 (173)
60 cd02992 PDI_a_QSOX PDIa family 99.7 1.9E-16 4.2E-21 124.0 12.7 103 184-289 2-110 (114)
61 cd02984 TRX_PICOT TRX domain, 99.7 1.6E-16 3.5E-21 120.2 11.0 95 190-291 2-96 (97)
62 cd02987 Phd_like_Phd Phosducin 99.7 1.8E-16 3.8E-21 133.4 11.5 108 182-294 61-174 (175)
63 PTZ00051 thioredoxin; Provisio 99.7 3.4E-16 7.4E-21 118.7 10.9 94 185-288 2-96 (98)
64 TIGR01130 ER_PDI_fam protein d 99.7 5.9E-16 1.3E-20 148.5 13.6 105 184-294 2-108 (462)
65 PTZ00102 disulphide isomerase; 99.7 7.5E-16 1.6E-20 148.8 14.4 108 182-294 356-464 (477)
66 PTZ00102 disulphide isomerase; 99.7 7.9E-16 1.7E-20 148.6 13.8 104 183-294 32-137 (477)
67 cd02949 TRX_NTR TRX domain, no 99.7 7.6E-16 1.6E-20 117.0 10.6 87 201-292 11-97 (97)
68 cd02951 SoxW SoxW family; SoxW 99.6 2.3E-15 4.9E-20 119.6 11.6 92 200-294 10-118 (125)
69 cd02975 PfPDO_like_N Pyrococcu 99.6 2.4E-15 5.3E-20 117.6 11.2 89 201-294 20-109 (113)
70 TIGR01295 PedC_BrcD bacterioci 99.6 3.8E-15 8.2E-20 118.0 11.7 100 185-292 8-121 (122)
71 cd02988 Phd_like_VIAF Phosduci 99.6 2.3E-15 4.9E-20 128.4 10.6 104 183-294 82-191 (192)
72 KOG0908 Thioredoxin-like prote 99.6 2E-15 4.3E-20 129.5 9.5 102 185-294 3-105 (288)
73 KOG4277 Uncharacterized conser 99.6 1.3E-15 2.8E-20 133.8 7.3 88 202-294 42-131 (468)
74 cd02947 TRX_family TRX family; 99.6 1.8E-14 4E-19 106.4 11.0 92 192-292 2-93 (93)
75 KOG0912 Thiol-disulfide isomer 99.6 6.4E-15 1.4E-19 129.6 9.0 101 188-294 1-105 (375)
76 cd02952 TRP14_like Human TRX-r 99.6 1.5E-14 3.3E-19 113.6 9.9 96 190-291 9-118 (119)
77 cd02982 PDI_b'_family Protein 99.6 4E-14 8.7E-19 108.2 11.3 90 202-294 11-102 (103)
78 TIGR01130 ER_PDI_fam protein d 99.5 5.1E-14 1.1E-18 135.0 13.1 106 182-294 345-453 (462)
79 TIGR00411 redox_disulf_1 small 99.5 4.8E-13 1E-17 97.9 10.6 80 206-294 2-81 (82)
80 cd02959 ERp19 Endoplasmic reti 99.5 1.8E-13 4E-18 107.6 8.1 99 192-293 7-111 (117)
81 TIGR03183 DNA_S_dndC putative 99.5 5E-14 1.1E-18 133.4 5.6 101 24-126 113-248 (447)
82 PRK06850 hypothetical protein; 99.4 1.7E-13 3.8E-18 131.2 5.9 100 25-126 135-267 (507)
83 PTZ00062 glutaredoxin; Provisi 99.4 1.2E-12 2.6E-17 112.2 10.3 89 189-294 5-93 (204)
84 TIGR02187 GlrX_arch Glutaredox 99.4 1.2E-12 2.5E-17 113.9 10.3 89 203-294 19-110 (215)
85 PRK00293 dipZ thiol:disulfide 99.4 1.9E-12 4E-17 127.6 12.4 103 189-295 459-570 (571)
86 KOG0191 Thioredoxin/protein di 99.4 1.6E-12 3.5E-17 122.5 10.7 102 185-293 31-132 (383)
87 PRK03147 thiol-disulfide oxido 99.4 7.3E-12 1.6E-16 104.6 12.9 92 202-295 60-172 (173)
88 cd02955 SSP411 TRX domain, SSP 99.4 2.9E-12 6.4E-17 101.6 9.6 100 189-294 4-118 (124)
89 PRK14018 trifunctional thiored 99.4 6.2E-12 1.3E-16 121.3 11.9 89 202-293 55-171 (521)
90 KOG0191 Thioredoxin/protein di 99.3 7.7E-12 1.7E-16 117.9 10.5 106 184-294 145-251 (383)
91 PHA02125 thioredoxin-like prot 99.3 1.3E-11 2.9E-16 89.2 8.9 72 207-291 2-73 (75)
92 TIGR02187 GlrX_arch Glutaredox 99.3 1.4E-11 3E-16 107.1 10.6 97 186-293 118-214 (215)
93 TIGR02738 TrbB type-F conjugat 99.3 2.2E-11 4.7E-16 100.1 11.1 89 202-294 49-152 (153)
94 TIGR00412 redox_disulf_2 small 99.3 1.4E-11 3E-16 89.4 8.4 74 207-291 2-75 (76)
95 PF13098 Thioredoxin_2: Thiore 99.3 5E-12 1.1E-16 98.1 6.5 88 201-291 3-112 (112)
96 TIGR02740 TraF-like TraF-like 99.3 2.1E-11 4.6E-16 109.4 11.2 88 202-294 165-263 (271)
97 KOG1731 FAD-dependent sulfhydr 99.3 3.5E-12 7.6E-17 121.1 6.4 109 180-292 36-150 (606)
98 cd03008 TryX_like_RdCVF Trypar 99.3 3.1E-11 6.8E-16 98.3 10.0 76 202-279 24-130 (146)
99 PRK15412 thiol:disulfide inter 99.3 6.2E-11 1.3E-15 100.7 11.4 87 202-294 67-175 (185)
100 cd02964 TryX_like_family Trypa 99.2 5E-11 1.1E-15 95.5 9.7 75 202-278 16-116 (132)
101 PF13905 Thioredoxin_8: Thiore 99.2 7.4E-11 1.6E-15 88.8 10.1 69 203-272 1-94 (95)
102 cd03009 TryX_like_TryX_NRX Try 99.2 6.4E-11 1.4E-15 94.6 10.0 70 202-272 17-111 (131)
103 cd03010 TlpA_like_DsbE TlpA-li 99.2 8.9E-11 1.9E-15 93.2 10.1 80 202-287 24-126 (127)
104 TIGR00385 dsbE periplasmic pro 99.2 1.7E-10 3.8E-15 96.8 11.2 87 202-294 62-170 (173)
105 KOG2644 3'-phosphoadenosine 5' 99.2 7.7E-12 1.7E-16 109.9 2.2 85 37-129 159-250 (282)
106 cd02973 TRX_GRX_like Thioredox 99.2 9.6E-11 2.1E-15 82.5 7.3 57 206-266 2-58 (67)
107 cd02958 UAS UAS family; UAS is 99.2 5.3E-10 1.1E-14 87.3 11.8 101 191-294 4-110 (114)
108 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 2E-10 4.4E-15 90.4 9.3 93 187-289 7-120 (123)
109 PLN02919 haloacid dehalogenase 99.1 2.7E-10 5.8E-15 119.5 11.5 91 202-294 419-535 (1057)
110 cd02966 TlpA_like_family TlpA- 99.1 4.2E-10 9.2E-15 86.1 9.5 76 202-278 18-115 (116)
111 cd03012 TlpA_like_DipZ_like Tl 99.1 8.2E-10 1.8E-14 87.7 9.2 77 202-279 22-124 (126)
112 cd02967 mauD Methylamine utili 99.1 9.4E-10 2E-14 85.4 9.2 68 202-271 20-106 (114)
113 COG4232 Thiol:disulfide interc 99.0 9E-10 1.9E-14 105.9 10.2 103 187-294 458-567 (569)
114 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 1.4E-09 3.1E-14 81.2 8.8 77 202-288 11-87 (89)
115 PRK11509 hydrogenase-1 operon 99.0 3.9E-09 8.5E-14 84.0 11.4 103 185-294 19-123 (132)
116 PRK13728 conjugal transfer pro 99.0 2.8E-09 6.2E-14 89.5 11.0 83 207-294 73-170 (181)
117 cd02960 AGR Anterior Gradient 99.0 1.3E-09 2.8E-14 86.7 8.3 84 192-279 11-98 (130)
118 PF08534 Redoxin: Redoxin; In 99.0 2.8E-09 6E-14 86.6 10.4 77 202-279 27-133 (146)
119 PF13899 Thioredoxin_7: Thiore 99.0 1.2E-09 2.7E-14 80.2 7.2 65 201-269 15-82 (82)
120 TIGR02661 MauD methylamine deh 99.0 4.3E-09 9.2E-14 89.7 11.3 89 202-294 73-178 (189)
121 smart00594 UAS UAS domain. 99.0 7.9E-09 1.7E-13 81.8 11.7 100 189-291 12-121 (122)
122 PTZ00056 glutathione peroxidas 99.0 4.7E-09 1E-13 90.2 10.7 44 202-245 38-81 (199)
123 PLN02399 phospholipid hydroper 99.0 8.2E-09 1.8E-13 90.6 12.1 92 202-294 98-233 (236)
124 KOG0913 Thiol-disulfide isomer 98.9 2E-10 4.3E-15 98.2 1.2 101 183-293 24-124 (248)
125 PLN02412 probable glutathione 98.9 1.7E-08 3.7E-13 84.3 11.0 91 202-294 28-163 (167)
126 COG3969 Predicted phosphoadeno 98.9 1.1E-09 2.4E-14 98.3 3.3 90 45-138 165-264 (407)
127 TIGR02540 gpx7 putative glutat 98.9 2.1E-08 4.6E-13 82.4 10.5 92 202-294 21-152 (153)
128 KOG0914 Thioredoxin-like prote 98.8 5.5E-09 1.2E-13 88.4 5.8 87 183-272 124-217 (265)
129 cd02969 PRX_like1 Peroxiredoxi 98.8 5.9E-08 1.3E-12 81.1 11.3 92 202-294 24-151 (171)
130 PF02114 Phosducin: Phosducin; 98.8 1.9E-08 4.1E-13 89.9 8.6 107 183-294 125-237 (265)
131 TIGR01626 ytfJ_HI0045 conserve 98.8 2.8E-08 6E-13 83.9 8.3 85 202-292 58-177 (184)
132 cd00340 GSH_Peroxidase Glutath 98.8 3E-08 6.5E-13 81.4 8.4 43 202-245 21-63 (152)
133 COG0526 TrxA Thiol-disulfide i 98.7 1.1E-07 2.3E-12 72.1 9.1 67 203-272 32-101 (127)
134 cd03017 PRX_BCP Peroxiredoxin 98.7 1.7E-07 3.7E-12 75.3 9.2 87 202-290 22-138 (140)
135 TIGR02196 GlrX_YruB Glutaredox 98.6 1.6E-07 3.5E-12 66.4 7.7 70 207-292 2-74 (74)
136 PTZ00256 glutathione peroxidas 98.6 4.5E-07 9.7E-12 76.8 10.0 92 202-294 39-180 (183)
137 TIGR03137 AhpC peroxiredoxin. 98.6 5.6E-07 1.2E-11 76.5 10.3 93 202-295 30-156 (187)
138 PF00578 AhpC-TSA: AhpC/TSA fa 98.6 4.4E-07 9.5E-12 71.2 8.9 70 202-272 24-120 (124)
139 PF13728 TraF: F plasmid trans 98.6 8.2E-07 1.8E-11 77.1 11.3 86 202-291 119-214 (215)
140 cd01659 TRX_superfamily Thiore 98.6 4.3E-07 9.3E-12 61.0 7.7 61 207-270 1-63 (69)
141 cd03015 PRX_Typ2cys Peroxiredo 98.5 6.7E-07 1.5E-11 74.9 10.4 92 202-294 28-156 (173)
142 PF01216 Calsequestrin: Calseq 98.5 1.1E-06 2.3E-11 79.7 11.8 108 178-294 29-143 (383)
143 COG2143 Thioredoxin-related pr 98.5 2.3E-06 5.1E-11 69.0 12.0 90 200-292 39-146 (182)
144 KOG2501 Thioredoxin, nucleored 98.5 2.5E-07 5.3E-12 75.3 6.2 70 202-272 32-127 (157)
145 PRK09437 bcp thioredoxin-depen 98.5 1.2E-06 2.5E-11 71.9 10.1 89 202-292 29-150 (154)
146 TIGR02200 GlrX_actino Glutared 98.5 9.2E-07 2E-11 63.3 7.9 70 207-292 2-76 (77)
147 PRK10382 alkyl hydroperoxide r 98.4 2E-06 4.3E-11 73.1 10.4 93 202-295 30-156 (187)
148 cd02970 PRX_like2 Peroxiredoxi 98.4 2E-06 4.3E-11 69.6 9.5 45 203-247 23-68 (149)
149 KOG1672 ATP binding protein [P 98.4 4.3E-07 9.3E-12 75.8 5.3 81 185-272 68-149 (211)
150 PRK00522 tpx lipid hydroperoxi 98.4 2.5E-06 5.4E-11 71.2 9.8 88 202-292 43-166 (167)
151 PF13848 Thioredoxin_6: Thiore 98.4 7.7E-06 1.7E-10 68.5 12.7 105 182-293 76-184 (184)
152 PRK13190 putative peroxiredoxi 98.4 2.6E-06 5.6E-11 73.4 9.7 92 202-295 26-154 (202)
153 cd03018 PRX_AhpE_like Peroxire 98.4 2.9E-06 6.3E-11 68.9 9.4 88 204-292 29-148 (149)
154 PF06110 DUF953: Eukaryotic pr 98.4 2.3E-06 5E-11 67.1 8.2 97 191-292 6-118 (119)
155 PRK15000 peroxidase; Provision 98.4 2.8E-06 6.1E-11 73.0 9.6 93 202-295 33-162 (200)
156 KOG3425 Uncharacterized conser 98.3 2.2E-06 4.8E-11 66.0 7.5 79 191-271 13-106 (128)
157 PF03190 Thioredox_DsbH: Prote 98.3 1.9E-06 4E-11 71.1 6.7 79 188-272 25-114 (163)
158 cd02991 UAS_ETEA UAS family, E 98.3 7.8E-06 1.7E-10 64.1 9.8 99 192-294 5-112 (116)
159 TIGR02739 TraF type-F conjugat 98.3 1E-05 2.2E-10 71.8 11.2 87 203-293 150-246 (256)
160 PF14595 Thioredoxin_9: Thiore 98.3 3E-06 6.4E-11 67.7 7.1 86 202-294 40-128 (129)
161 cd03014 PRX_Atyp2cys Peroxired 98.2 4.8E-06 1E-10 67.2 8.0 73 202-277 25-126 (143)
162 PTZ00137 2-Cys peroxiredoxin; 98.2 1.5E-05 3.2E-10 71.1 10.9 93 202-295 97-225 (261)
163 TIGR02180 GRX_euk Glutaredoxin 98.2 4.2E-06 9.2E-11 61.0 6.2 59 207-271 1-63 (84)
164 PRK13703 conjugal pilus assemb 98.2 1.9E-05 4.1E-10 69.8 10.9 87 203-293 143-239 (248)
165 PF07912 ERp29_N: ERp29, N-ter 98.2 7.9E-05 1.7E-09 58.0 12.9 105 183-294 4-118 (126)
166 KOG2603 Oligosaccharyltransfer 98.2 2E-05 4.4E-10 70.5 10.9 112 181-294 38-165 (331)
167 cd02971 PRX_family Peroxiredox 98.2 1.1E-05 2.3E-10 64.6 8.5 77 202-279 21-128 (140)
168 cd03016 PRX_1cys Peroxiredoxin 98.2 1.6E-05 3.4E-10 68.5 9.9 90 205-295 28-154 (203)
169 PRK13191 putative peroxiredoxi 98.1 2.4E-05 5.2E-10 68.0 9.7 93 202-295 32-161 (215)
170 PRK13189 peroxiredoxin; Provis 98.1 2.3E-05 5.1E-10 68.4 9.6 93 202-295 34-163 (222)
171 cd03072 PDI_b'_ERp44 PDIb' fam 98.1 5.7E-05 1.2E-09 58.7 10.8 101 185-294 1-107 (111)
172 cd02968 SCO SCO (an acronym fo 98.1 1.7E-05 3.6E-10 63.7 7.8 45 202-246 21-69 (142)
173 PRK13599 putative peroxiredoxi 98.1 3E-05 6.6E-10 67.4 9.8 92 203-295 28-156 (215)
174 KOG3414 Component of the U4/U6 98.1 8.3E-05 1.8E-09 57.9 10.9 99 191-293 12-118 (142)
175 PF13192 Thioredoxin_3: Thiore 98.0 4.6E-05 9.9E-10 54.9 9.0 74 208-292 3-76 (76)
176 cd02981 PDI_b_family Protein D 98.0 0.00014 3.1E-09 54.4 10.7 89 191-293 8-96 (97)
177 cd02983 P5_C P5 family, C-term 97.9 0.00028 6.1E-09 56.4 12.7 106 183-294 2-114 (130)
178 PTZ00253 tryparedoxin peroxida 97.9 7.7E-05 1.7E-09 64.0 9.8 93 202-295 35-164 (199)
179 KOG0911 Glutaredoxin-related p 97.9 1.5E-05 3.3E-10 68.3 4.4 67 202-272 16-82 (227)
180 cd02976 NrdH NrdH-redoxin (Nrd 97.9 8.3E-05 1.8E-09 52.1 7.6 69 207-291 2-73 (73)
181 PRK11200 grxA glutaredoxin 1; 97.9 5.6E-05 1.2E-09 55.6 6.8 75 206-293 2-81 (85)
182 PRK10606 btuE putative glutath 97.9 2.7E-05 5.9E-10 65.9 5.6 43 202-245 24-66 (183)
183 cd03073 PDI_b'_ERp72_ERp57 PDI 97.8 0.00026 5.7E-09 54.9 10.6 99 186-294 2-110 (111)
184 PRK10877 protein disulfide iso 97.8 0.00014 3.1E-09 63.9 9.3 82 202-295 106-231 (232)
185 KOG3170 Conserved phosducin-li 97.7 0.00028 6.1E-09 59.4 9.3 105 182-293 90-199 (240)
186 TIGR03143 AhpF_homolog putativ 97.7 0.00021 4.6E-09 70.8 10.2 79 203-291 475-554 (555)
187 PF02966 DIM1: Mitosis protein 97.7 0.00088 1.9E-08 52.9 11.0 98 191-293 9-115 (133)
188 PRK15317 alkyl hydroperoxide r 97.7 0.00031 6.6E-09 69.0 10.6 97 185-293 100-196 (517)
189 KOG3171 Conserved phosducin-li 97.6 0.00021 4.5E-09 60.8 7.0 106 183-293 138-249 (273)
190 PF00462 Glutaredoxin: Glutare 97.5 0.00049 1.1E-08 46.9 7.2 52 207-266 1-55 (60)
191 TIGR02183 GRXA Glutaredoxin, G 97.5 0.00029 6.2E-09 52.1 6.1 74 207-293 2-80 (86)
192 cd03419 GRX_GRXh_1_2_like Glut 97.5 0.0004 8.6E-09 50.2 6.4 57 207-271 2-62 (82)
193 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.00059 1.3E-08 58.3 7.2 77 202-291 76-197 (197)
194 TIGR03140 AhpF alkyl hydropero 97.3 0.0016 3.4E-08 64.0 10.7 95 186-292 102-196 (515)
195 PF11009 DUF2847: Protein of u 97.3 0.0023 4.9E-08 49.0 8.5 81 189-272 6-90 (105)
196 cd02066 GRX_family Glutaredoxi 97.2 0.0017 3.7E-08 45.0 6.9 55 207-271 2-59 (72)
197 PF13462 Thioredoxin_4: Thiore 97.2 0.0061 1.3E-07 49.7 11.1 83 202-293 11-162 (162)
198 PRK10329 glutaredoxin-like pro 97.2 0.0051 1.1E-07 44.9 9.2 71 207-293 3-75 (81)
199 TIGR02194 GlrX_NrdH Glutaredox 97.1 0.0014 3.1E-08 46.4 6.1 68 207-289 1-70 (72)
200 PF05768 DUF836: Glutaredoxin- 97.1 0.0013 2.8E-08 48.0 5.8 79 207-292 2-81 (81)
201 TIGR02190 GlrX-dom Glutaredoxi 97.1 0.0022 4.7E-08 46.4 6.8 71 203-291 6-78 (79)
202 cd03067 PDI_b_PDIR_N PDIb fami 97.1 0.0072 1.6E-07 45.5 9.2 94 191-292 10-109 (112)
203 cd01992 PP-ATPase N-terminal d 97.0 0.0015 3.2E-08 55.0 6.2 106 5-111 47-167 (185)
204 PRK11657 dsbG disulfide isomer 97.0 0.0046 1E-07 55.0 9.5 85 202-292 116-249 (251)
205 TIGR02181 GRX_bact Glutaredoxi 97.0 0.0021 4.5E-08 46.3 5.8 55 207-271 1-58 (79)
206 PF00837 T4_deiodinase: Iodoth 96.9 0.0082 1.8E-07 52.4 9.9 61 181-242 80-140 (237)
207 cd03418 GRX_GRXb_1_3_like Glut 96.9 0.0039 8.5E-08 44.2 6.7 55 207-271 2-60 (75)
208 PF13848 Thioredoxin_6: Thiore 96.9 0.0099 2.2E-07 49.5 10.1 68 220-294 7-74 (184)
209 cd03027 GRX_DEP Glutaredoxin ( 96.9 0.0048 1E-07 43.7 6.7 51 207-265 3-56 (73)
210 TIGR03143 AhpF_homolog putativ 96.8 0.01 2.2E-07 58.8 11.0 97 192-294 356-453 (555)
211 TIGR02189 GlrX-like_plant Glut 96.8 0.0036 7.7E-08 47.5 6.0 55 207-271 10-70 (99)
212 PF07449 HyaE: Hydrogenase-1 e 96.8 0.0051 1.1E-07 47.3 6.8 82 183-271 9-93 (107)
213 PHA03050 glutaredoxin; Provisi 96.7 0.0034 7.3E-08 48.5 5.4 54 207-265 15-74 (108)
214 cd02972 DsbA_family DsbA famil 96.7 0.0083 1.8E-07 43.9 7.1 60 207-268 1-91 (98)
215 cd03029 GRX_hybridPRX5 Glutare 96.6 0.0093 2E-07 42.1 6.6 67 207-291 3-71 (72)
216 TIGR00365 monothiol glutaredox 96.6 0.014 3.1E-07 44.0 7.6 55 203-265 11-72 (97)
217 cd03028 GRX_PICOT_like Glutare 96.5 0.014 3.1E-07 43.3 7.0 59 203-271 7-72 (90)
218 TIGR02432 lysidine_TilS_N tRNA 96.4 0.0042 9.2E-08 52.5 4.4 105 5-111 47-171 (189)
219 COG0695 GrxC Glutaredoxin and 96.3 0.016 3.5E-07 42.1 6.6 52 207-266 3-59 (80)
220 cd03069 PDI_b_ERp57 PDIb famil 96.3 0.071 1.5E-06 40.6 10.4 91 189-294 7-103 (104)
221 COG1225 Bcp Peroxiredoxin [Pos 96.2 0.074 1.6E-06 43.7 10.3 92 202-294 29-155 (157)
222 cd03066 PDI_b_Calsequestrin_mi 96.2 0.16 3.4E-06 38.5 11.6 97 186-294 3-100 (102)
223 PRK10638 glutaredoxin 3; Provi 96.1 0.025 5.3E-07 41.2 6.5 52 207-266 4-58 (83)
224 KOG2640 Thioredoxin [Function 96.1 0.0025 5.4E-08 57.3 1.4 87 202-294 75-161 (319)
225 cd03023 DsbA_Com1_like DsbA fa 95.9 0.021 4.6E-07 45.8 5.8 33 202-234 4-36 (154)
226 PRK10824 glutaredoxin-4; Provi 95.4 0.063 1.4E-06 41.9 6.7 56 203-266 14-76 (115)
227 cd01993 Alpha_ANH_like_II This 95.1 0.039 8.5E-07 46.1 5.2 78 30-109 91-176 (185)
228 cd03013 PRX5_like Peroxiredoxi 94.8 0.074 1.6E-06 43.6 5.9 44 203-246 29-75 (155)
229 KOG1752 Glutaredoxin and relat 94.8 0.1 2.2E-06 39.9 6.2 58 203-266 13-73 (104)
230 COG1331 Highly conserved prote 94.6 0.082 1.8E-06 52.7 6.5 80 187-272 30-120 (667)
231 PRK12759 bifunctional gluaredo 94.5 0.097 2.1E-06 50.0 6.7 51 207-266 4-66 (410)
232 PTZ00062 glutaredoxin; Provisi 94.3 0.19 4.1E-06 43.3 7.4 56 203-266 112-174 (204)
233 cd03019 DsbA_DsbA DsbA family, 94.2 0.085 1.8E-06 43.6 4.9 38 202-240 14-51 (178)
234 cd03068 PDI_b_ERp72 PDIb famil 92.8 2.2 4.8E-05 32.6 10.4 95 186-293 3-106 (107)
235 PRK10954 periplasmic protein d 91.6 0.26 5.6E-06 42.4 4.3 40 203-243 37-79 (207)
236 cd03031 GRX_GRX_like Glutaredo 91.1 0.88 1.9E-05 37.1 6.7 51 207-266 2-66 (147)
237 cd02978 KaiB_like KaiB-like fa 90.0 1.4 3.1E-05 31.2 6.1 63 206-270 3-65 (72)
238 cd03060 GST_N_Omega_like GST_N 88.1 1.6 3.4E-05 30.3 5.3 52 208-265 2-53 (71)
239 cd02974 AhpF_NTD_N Alkyl hydro 87.9 6.8 0.00015 29.3 8.9 75 203-294 19-93 (94)
240 PRK10696 tRNA 2-thiocytidine b 87.9 1 2.2E-05 40.2 5.2 28 81-108 171-198 (258)
241 cd02977 ArsC_family Arsenate R 87.6 0.96 2.1E-05 34.3 4.3 78 207-293 1-85 (105)
242 COG0386 BtuE Glutathione perox 87.6 7.5 0.00016 31.9 9.4 57 202-259 24-90 (162)
243 KOG2507 Ubiquitin regulatory p 87.2 6.2 0.00013 37.5 9.9 101 191-294 6-110 (506)
244 PRK15317 alkyl hydroperoxide r 85.4 5.4 0.00012 39.2 9.3 76 203-294 18-93 (517)
245 PRK09301 circadian clock prote 84.6 6.4 0.00014 30.0 7.2 82 202-287 4-85 (103)
246 PHA03075 glutaredoxin-like pro 84.3 1.7 3.7E-05 33.7 4.0 30 204-233 2-31 (123)
247 TIGR02654 circ_KaiB circadian 84.1 7.9 0.00017 28.6 7.3 72 204-279 3-74 (87)
248 cd03041 GST_N_2GST_N GST_N fam 83.3 9.2 0.0002 26.9 7.5 72 207-294 2-76 (77)
249 PF10281 Ish1: Putative stress 82.5 1.6 3.5E-05 26.7 2.7 22 90-111 3-24 (38)
250 cd03036 ArsC_like Arsenate Red 82.3 2.2 4.7E-05 32.8 4.1 78 208-293 2-86 (111)
251 TIGR03140 AhpF alkyl hydropero 81.9 8.4 0.00018 37.8 9.0 77 203-294 18-94 (515)
252 cd03040 GST_N_mPGES2 GST_N fam 81.3 15 0.00034 25.4 8.4 73 207-294 2-75 (77)
253 cd03059 GST_N_SspA GST_N famil 78.2 5.5 0.00012 27.3 4.8 70 208-293 2-71 (73)
254 KOG4277 Uncharacterized conser 77.6 9.6 0.00021 34.7 7.0 90 201-293 248-349 (468)
255 cd03051 GST_N_GTT2_like GST_N 77.0 5 0.00011 27.4 4.2 53 208-266 2-57 (74)
256 PF13417 GST_N_3: Glutathione 76.4 13 0.00029 25.8 6.4 70 209-294 1-70 (75)
257 cd01712 ThiI ThiI is required 76.2 4.3 9.3E-05 33.7 4.3 55 44-107 104-158 (177)
258 cd00570 GST_N_family Glutathio 76.2 12 0.00026 24.5 6.0 53 208-266 2-55 (71)
259 KOG2792 Putative cytochrome C 75.6 22 0.00047 31.7 8.5 90 202-293 138-273 (280)
260 PF06053 DUF929: Domain of unk 75.6 7.7 0.00017 34.4 5.9 58 202-269 57-114 (249)
261 cd03074 PDI_b'_Calsequestrin_C 74.0 38 0.00083 26.1 10.7 107 186-294 4-119 (120)
262 TIGR01617 arsC_related transcr 73.7 7.2 0.00016 30.1 4.7 33 208-247 2-34 (117)
263 TIGR00420 trmU tRNA (5-methyla 73.6 6.2 0.00014 36.9 5.1 26 84-109 163-188 (352)
264 PF02630 SCO1-SenC: SCO1/SenC; 72.8 11 0.00024 31.4 5.9 45 202-246 51-98 (174)
265 cd01995 ExsB ExsB is a transcr 72.6 3.1 6.8E-05 34.1 2.6 99 6-112 42-145 (169)
266 PRK01655 spxA transcriptional 72.6 7.1 0.00015 31.0 4.5 34 207-247 2-35 (131)
267 COG0450 AhpC Peroxiredoxin [Po 72.4 32 0.0007 29.3 8.5 92 203-295 33-161 (194)
268 PF09673 TrbC_Ftype: Type-F co 71.7 34 0.00073 26.4 8.0 72 189-269 9-80 (113)
269 PF13743 Thioredoxin_5: Thiore 70.9 3.6 7.8E-05 34.4 2.6 19 249-268 137-155 (176)
270 cd02990 UAS_FAF1 UAS family, F 70.1 55 0.0012 26.2 11.0 90 201-293 19-131 (136)
271 cd03035 ArsC_Yffb Arsenate Red 68.8 5.3 0.00011 30.4 2.9 34 207-247 1-34 (105)
272 PF07689 KaiB: KaiB domain; I 68.2 2.5 5.4E-05 30.9 0.9 55 210-266 3-57 (82)
273 PF00255 GSHPx: Glutathione pe 68.2 20 0.00043 27.5 6.0 45 202-247 20-64 (108)
274 COG2761 FrnE Predicted dithiol 67.9 11 0.00024 32.9 5.0 38 250-294 175-212 (225)
275 COG1999 Uncharacterized protei 67.0 19 0.0004 31.0 6.3 51 202-252 66-122 (207)
276 PF13743 Thioredoxin_5: Thiore 66.0 13 0.00028 31.0 5.0 34 209-243 2-35 (176)
277 cd03037 GST_N_GRX2 GST_N famil 65.9 22 0.00049 24.2 5.5 69 208-292 2-70 (71)
278 PF04592 SelP_N: Selenoprotein 65.8 12 0.00025 32.9 4.7 47 201-247 24-73 (238)
279 COG3531 Predicted protein-disu 65.2 13 0.00028 31.7 4.7 42 249-293 164-207 (212)
280 COG4545 Glutaredoxin-related p 65.0 14 0.0003 26.4 4.1 52 208-267 5-71 (85)
281 cd03055 GST_N_Omega GST_N fami 64.8 45 0.00097 24.0 7.2 54 207-266 19-72 (89)
282 cd03045 GST_N_Delta_Epsilon GS 64.5 11 0.00023 25.9 3.6 52 208-265 2-56 (74)
283 cd03032 ArsC_Spx Arsenate Redu 64.2 14 0.0003 28.4 4.5 34 207-247 2-35 (115)
284 PRK12559 transcriptional regul 64.1 13 0.00028 29.5 4.4 34 207-247 2-35 (131)
285 PF01323 DSBA: DSBA-like thior 63.3 13 0.00028 30.8 4.5 37 249-292 157-193 (193)
286 PRK00143 mnmA tRNA-specific 2- 62.2 17 0.00037 33.9 5.5 78 27-108 98-183 (346)
287 PF01216 Calsequestrin: Calseq 61.6 1.4E+02 0.0031 27.9 11.1 102 182-295 145-247 (383)
288 TIGR00269 conserved hypothetic 61.6 8.3 0.00018 29.3 2.8 25 84-108 3-27 (104)
289 TIGR02742 TrbC_Ftype type-F co 61.0 16 0.00035 29.0 4.4 22 249-271 61-82 (130)
290 PF01171 ATP_bind_3: PP-loop f 59.4 10 0.00022 31.6 3.3 93 6-109 48-165 (182)
291 PF09822 ABC_transp_aux: ABC-t 58.4 1.3E+02 0.0029 26.5 11.9 76 181-260 5-88 (271)
292 cd03023 DsbA_Com1_like DsbA fa 57.6 14 0.0003 29.0 3.7 36 249-292 119-154 (154)
293 COG1651 DsbG Protein-disulfide 55.9 34 0.00074 29.7 6.1 41 203-243 84-124 (244)
294 COG3634 AhpF Alkyl hydroperoxi 54.6 60 0.0013 30.6 7.4 81 202-292 115-195 (520)
295 cd01990 Alpha_ANH_like_I This 53.9 18 0.0004 30.5 3.9 61 34-107 84-148 (202)
296 PF01323 DSBA: DSBA-like thior 52.9 29 0.00063 28.6 5.0 39 206-244 1-39 (193)
297 PRK13344 spxA transcriptional 52.8 27 0.00059 27.7 4.5 34 207-247 2-35 (132)
298 COG0037 MesJ tRNA(Ile)-lysidin 52.3 10 0.00022 34.1 2.2 78 29-107 104-188 (298)
299 PRK08349 hypothetical protein; 51.8 14 0.0003 31.3 2.9 54 44-106 106-159 (198)
300 PF13778 DUF4174: Domain of un 50.8 1.1E+02 0.0025 23.5 9.8 86 206-294 12-111 (118)
301 COG3019 Predicted metal-bindin 49.5 46 0.001 26.8 5.1 73 205-293 26-102 (149)
302 TIGR00268 conserved hypothetic 49.2 29 0.00063 30.6 4.6 52 44-108 108-161 (252)
303 KOG0855 Alkyl hydroperoxide re 49.0 19 0.00041 30.0 3.0 29 202-230 89-122 (211)
304 cd03024 DsbA_FrnE DsbA family, 48.8 27 0.00059 29.1 4.2 36 249-291 165-200 (201)
305 cd01999 Argininosuccinate_Synt 48.5 26 0.00057 33.2 4.4 29 81-109 134-165 (385)
306 KOG0912 Thiol-disulfide isomer 48.0 91 0.002 28.7 7.4 96 183-294 210-318 (375)
307 PF08806 Sep15_SelM: Sep15/Sel 47.6 20 0.00044 25.8 2.7 34 260-293 41-74 (78)
308 cd03019 DsbA_DsbA DsbA family, 47.0 35 0.00076 27.7 4.5 20 249-271 133-152 (178)
309 cd03030 GRX_SH3BGR Glutaredoxi 46.3 90 0.002 23.1 6.1 41 210-251 4-44 (92)
310 cd03025 DsbA_FrnE_like DsbA fa 45.6 29 0.00063 28.7 3.8 28 207-234 3-30 (193)
311 PF11287 DUF3088: Protein of u 44.3 41 0.0009 26.0 4.1 76 215-293 24-105 (112)
312 COG1056 NadR Nicotinamide mono 44.3 87 0.0019 26.2 6.3 78 34-116 20-102 (172)
313 KOG1651 Glutathione peroxidase 43.8 45 0.00099 27.7 4.5 45 202-246 33-77 (171)
314 cd01997 GMP_synthase_C The C-t 43.4 24 0.00051 32.2 3.1 36 83-118 142-177 (295)
315 PRK00509 argininosuccinate syn 43.1 79 0.0017 30.2 6.7 63 34-108 98-167 (399)
316 COG2516 Biotin synthase-relate 42.2 17 0.00036 33.5 1.9 33 105-137 274-307 (339)
317 PRK00919 GMP synthase subunit 41.7 21 0.00046 32.7 2.6 36 82-117 154-189 (307)
318 cd03056 GST_N_4 GST_N family, 41.0 40 0.00086 22.7 3.4 53 208-266 2-57 (73)
319 PRK14665 mnmA tRNA-specific 2- 39.8 50 0.0011 31.0 4.7 22 85-106 160-181 (360)
320 PRK10660 tilS tRNA(Ile)-lysidi 38.8 24 0.00053 34.0 2.6 28 82-109 152-179 (436)
321 PRK10954 periplasmic protein d 38.1 53 0.0012 27.9 4.4 20 249-271 157-176 (207)
322 TIGR00364 exsB protein. This p 37.5 40 0.00087 28.5 3.5 28 82-109 150-180 (201)
323 COG1651 DsbG Protein-disulfide 37.1 51 0.0011 28.6 4.2 38 249-294 205-242 (244)
324 PRK11106 queuosine biosynthesi 36.2 49 0.0011 29.0 3.9 80 43-125 115-202 (231)
325 PRK00074 guaA GMP synthase; Re 35.8 25 0.00055 34.6 2.2 36 82-117 356-391 (511)
326 cd03033 ArsC_15kD Arsenate Red 35.1 51 0.0011 25.3 3.4 33 207-246 2-34 (113)
327 PRK13730 conjugal transfer pil 35.0 73 0.0016 27.4 4.5 34 249-286 152-185 (212)
328 PF12105 SpoU_methylas_C: SpoU 34.5 6 0.00013 26.7 -1.7 27 88-114 23-49 (57)
329 TIGR00884 guaA_Cterm GMP synth 34.3 36 0.00079 31.2 2.9 36 82-117 156-191 (311)
330 KOG1422 Intracellular Cl- chan 33.2 2.6E+02 0.0055 24.3 7.5 64 214-293 20-83 (221)
331 PF05988 DUF899: Bacterial pro 32.3 1.5E+02 0.0033 25.6 6.1 83 203-286 68-181 (211)
332 cd03053 GST_N_Phi GST_N family 32.2 85 0.0018 21.4 4.0 71 207-293 2-75 (76)
333 PRK14561 hypothetical protein; 31.2 93 0.002 26.3 4.7 54 42-103 93-146 (194)
334 PF04134 DUF393: Protein of un 30.6 74 0.0016 23.9 3.7 57 210-271 2-61 (114)
335 TIGR01689 EcbF-BcbF capsule bi 30.1 41 0.00088 26.6 2.1 21 92-112 65-85 (126)
336 cd03061 GST_N_CLIC GST_N famil 29.5 2.3E+02 0.005 20.8 7.4 67 212-294 19-85 (91)
337 cd08757 SAM_PNT_ESE Sterile al 28.3 40 0.00087 23.5 1.6 37 89-125 3-43 (68)
338 cd03025 DsbA_FrnE_like DsbA fa 27.9 55 0.0012 27.0 2.7 22 249-271 159-180 (193)
339 PF06953 ArsD: Arsenical resis 27.7 2E+02 0.0044 22.6 5.7 55 232-292 36-99 (123)
340 PRK11081 tRNA guanosine-2'-O-m 27.4 38 0.00083 29.7 1.7 29 88-116 187-215 (229)
341 cd08539 SAM_PNT-ESE-3-like Ste 27.4 35 0.00077 24.3 1.2 38 89-126 6-47 (74)
342 cd01998 tRNA_Me_trans tRNA met 26.9 60 0.0013 30.3 3.0 81 27-107 95-183 (349)
343 cd03049 GST_N_3 GST_N family, 26.8 1.6E+02 0.0035 19.8 4.6 55 208-266 2-56 (73)
344 KOG0852 Alkyl hydroperoxide re 26.1 4E+02 0.0088 22.5 7.4 93 202-295 32-161 (196)
345 PF02201 SWIB: SWIB/MDM2 domai 24.4 48 0.001 23.5 1.5 12 94-105 27-38 (76)
346 PRK09481 sspA stringent starva 24.4 3.4E+02 0.0073 22.7 7.1 57 203-265 7-63 (211)
347 COG1393 ArsC Arsenate reductas 24.2 1.1E+02 0.0024 23.8 3.6 22 206-227 2-23 (117)
348 KOG1946 RNA polymerase I trans 23.5 42 0.00092 29.6 1.2 12 94-105 126-137 (240)
349 cd03034 ArsC_ArsC Arsenate Red 23.5 87 0.0019 23.8 2.9 34 207-247 1-34 (112)
350 TIGR03439 methyl_EasF probable 23.3 3.2E+02 0.0069 25.2 7.0 86 204-294 77-182 (319)
351 cd03052 GST_N_GDAP1 GST_N fami 23.0 2.6E+02 0.0056 19.1 6.4 52 208-265 2-56 (73)
352 TIGR00014 arsC arsenate reduct 22.0 96 0.0021 23.7 2.9 33 208-247 2-34 (114)
353 TIGR00552 nadE NAD+ synthetase 21.2 71 0.0015 28.1 2.2 25 83-107 153-177 (250)
354 PLN02720 complex II 20.3 67 0.0014 25.5 1.6 20 84-103 33-52 (140)
355 KOG2244 Highly conserved prote 20.1 1.5E+02 0.0032 29.6 4.1 77 189-270 101-187 (786)
No 1
>PLN02309 5'-adenylylsulfate reductase
Probab=100.00 E-value=5.3e-75 Score=548.20 Aligned_cols=289 Identities=83% Similarity=1.442 Sum_probs=259.2
Q ss_pred CCCCHHHHHHHHHhcCCCCccccChhhhcchhchHHHHHHHhcCCEEEEeeeccCCCcccCCCCceecCCccccccCCCC
Q 022560 1 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVG 80 (295)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~K~~pl~~~l~~~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~ 80 (295)
++|+..+++++++.+|+..||+++++.||.+||++||++||+++++||+|+||+||+++|++++++++|+.+...+.|++
T Consensus 168 ~~P~~~~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~~~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~~~~~~ 247 (457)
T PLN02309 168 MFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFEGLDGGPG 247 (457)
T ss_pred ECCCcchHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHhhCCEEEEeeccccCccccccCCeeeecccccccccCCC
Confidence 46899999999999999989998999999999999999999999999999999998448999999999987655555667
Q ss_pred CEEEEeeCCCCCHHHHHHHHHHCCCCCCccccCCccccCCCCCCCCCCCCccccccccccccCCccccCCCCCCCcchhh
Q 022560 81 SLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDA 160 (295)
Q Consensus 81 ~~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~sigc~~ct~~~~~~~~~r~gr~~w~~~~~~ecglh~~~i~~~~~ 160 (295)
+++|||||++||..|||.||++|+|||||||++||+||||.+||+|+.+++++|+|||||++..|+|||||..++....
T Consensus 248 ~~lKvnPl~~Wt~~dVw~Yi~~~~lP~npL~~~GY~SIGC~pCT~pv~~g~~~RaGRw~w~~~~k~ECGlH~~~~~~~~- 326 (457)
T PLN02309 248 SLVKWNPLANVTGNEVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEED- 326 (457)
T ss_pred CeeEEcccccCCHHHHHHHHHHcCCCCCcchhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCcccccCCCCCccccc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987555443
Q ss_pred hhcCCCCCCCCCCcccccccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEE
Q 022560 161 AVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 240 (295)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~ 240 (295)
+......+.+..++++.+..|++|+.++|++++...+.+++|||+||||||++|+.|.|.|.++++.+.+.++.|+
T Consensus 327 ----~~~~~~~~~~~~~dl~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~ 402 (457)
T PLN02309 327 ----NGAANDNGNAAVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVA 402 (457)
T ss_pred ----ccccccccccccccccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEE
Confidence 2223344566678888889999999999999986667899999999999999999999999999999987679999
Q ss_pred EEEcC-CCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 022560 241 KFRAD-GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 295 (295)
Q Consensus 241 ~vd~~-~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l~ 295 (295)
+||++ .+ ..+++++|+|+++||+++|++|....+.|.++.++.++|++||++++
T Consensus 403 kVD~d~~~-~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~~ 457 (457)
T PLN02309 403 KFRADGDQ-KEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSLR 457 (457)
T ss_pred EEECCCcc-hHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHhC
Confidence 99999 65 78883369999999999999988778899876799999999999885
No 2
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=100.00 E-value=1.6e-74 Score=544.97 Aligned_cols=291 Identities=85% Similarity=1.453 Sum_probs=256.7
Q ss_pred CCCCHHHHHHHHHhcCCCCccccChhhhcchhchHHHHHHHhcCCEEEEeeeccCCCcccCCCCceecCCccccccCCCC
Q 022560 1 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVG 80 (295)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~K~~pl~~~l~~~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~ 80 (295)
++|+..+++++++.+|+..||+++++.||++||++||++||+++++||+|+||+||+++|+.++++++|+.++....|++
T Consensus 173 ~~p~~~~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~~~~awitG~Rr~Qs~~tRa~~~~ve~d~~~~~~~~~~~ 252 (463)
T TIGR00424 173 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVG 252 (463)
T ss_pred ECCCcchHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHHhCCcEEeeeccccCccccccCCcccccccccccccCCC
Confidence 36888889899999999999998999999999999999999999999999999999448999999999987765445666
Q ss_pred CEEEEeeCCCCCHHHHHHHHHHCCCCCCccccCCccccCCCCCCCCCCCCccccccccccccCCccccCCCCCCCcchhh
Q 022560 81 SLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDA 160 (295)
Q Consensus 81 ~~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~sigc~~ct~~~~~~~~~r~gr~~w~~~~~~ecglh~~~i~~~~~ 160 (295)
+++|+|||++||.+|||.||++|+|||||||++||+||||.+||+|+.+++++|+|||||++..|+|||||..++....
T Consensus 253 ~~iKvnPLa~Wt~~dVw~Yi~~~~LP~npL~~~GY~SIGC~pCT~pv~~ged~RaGRW~w~~~~k~ECGlH~~~~~~~~- 331 (463)
T TIGR00424 253 SLVKWNPVANVEGKDVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEET- 331 (463)
T ss_pred ceEEEeecccCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCccccc-
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987554322
Q ss_pred hhcCCCCCCCCCCcccccccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEE
Q 022560 161 AVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 240 (295)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~ 240 (295)
.+......++..+.+++.+..|++|+.++|+.+++..+.+++|||+||||||++|+.|.|.|+++++.+++.++.|+
T Consensus 332 ---~~~~~~~~~~~~~~dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~ 408 (463)
T TIGR00424 332 ---LDGAVNGNGSDAVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVA 408 (463)
T ss_pred ---cchhhhhccccccccccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEE
Confidence 12222234666788888999999999999999986556889999999999999999999999999999987559999
Q ss_pred EEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 022560 241 KFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 295 (295)
Q Consensus 241 ~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l~ 295 (295)
+||++.+...++.++|+|.++||+++|++|...++.|.++.++.+.|..||+.++
T Consensus 409 kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~~ 463 (463)
T TIGR00424 409 KFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLLR 463 (463)
T ss_pred EEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhhC
Confidence 9999976334542689999999999999997667889865899999999999875
No 3
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-47 Score=313.89 Aligned_cols=148 Identities=62% Similarity=1.002 Sum_probs=141.6
Q ss_pred CCCCHHHHHHHHHhcCCCCccccChhhhcchhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCceecCCccccccCC
Q 022560 1 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGG 78 (295)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~ 78 (295)
|+||..+++...+..|+.+||+++.+.||+++||+|++||++++ .|||||.|++|| ++|+.+|+++.|+-|
T Consensus 105 ~~pd~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~-gtRselpiVqvD~~f------ 177 (261)
T KOG0189|consen 105 YFPDAVEVEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQG-GTRSELPIVQVDPVF------ 177 (261)
T ss_pred EcchhHHHHHHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccCC-CcccccceEEecCcc------
Confidence 58999999999999999999999999999999999999999999 699999999999 899999999999976
Q ss_pred CCCEEEEeeCCCCCHHHHHHHHHHCCCCCCccccCCccccCCCCCCCCCCCCccccccccccccCCccccCCCCCCCcch
Q 022560 79 VGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQE 158 (295)
Q Consensus 79 ~~~~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~sigc~~ct~~~~~~~~~r~gr~~w~~~~~~ecglh~~~i~~~ 158 (295)
+.++||||++|+..|||.||+.++||||.|+++||+||||.+||+|+.++.+||+|||||+ .++|||||..+++..
T Consensus 178 --ellK~NPlaN~~~~dV~nyi~t~nVP~NeL~~~GY~SIG~~~~TqpV~~Ge~ERaGRW~~~--~~tECGlHkg~~s~~ 253 (261)
T KOG0189|consen 178 --ELLKINPLANWEFNDVWNYIRTNNVPYNELLAAGYRSIGDEHSTQPVLEGEDERAGRWWGE--KKTECGLHKGNQSKF 253 (261)
T ss_pred --ceeeecccccccHHHHHHHHHhcCCcHHHHHhcCCeeccCccccCcCCCCcccccccccch--hchhccccCcchhhh
Confidence 6999999999999999999999999999999999999999999999999999999999988 889999998877654
Q ss_pred h
Q 022560 159 D 159 (295)
Q Consensus 159 ~ 159 (295)
+
T Consensus 254 a 254 (261)
T KOG0189|consen 254 A 254 (261)
T ss_pred h
Confidence 3
No 4
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=100.00 E-value=1.1e-42 Score=303.56 Aligned_cols=133 Identities=35% Similarity=0.654 Sum_probs=120.5
Q ss_pred HHHHHHHhcCCCCccccChhhhcchhchHHHHHHHhcCC--EEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEE
Q 022560 7 EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVK 84 (295)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~c~~~~K~~pl~~~l~~~~--~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 84 (295)
+++++.+.+|... |..+++.||+++|++||+++|++++ +||+|+||+|| .+|+++++++.|+. ++++|
T Consensus 92 ~~~~~~~~~G~~~-~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es-~~Ra~~~~~~~d~~--------~~~~k 161 (226)
T TIGR02057 92 SEADFEAKYGKLL-WQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQG-SARANLPVIEIDEQ--------NGILK 161 (226)
T ss_pred hHHHHHHhcCCCc-cccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhC-ccccCCccccccCC--------CCeEE
Confidence 4556777888753 5668899999999999999999965 89999999999 59999999998753 46999
Q ss_pred EeeCCCCCHHHHHHHHHHCCCCCCccccCCccccCCCCCCCCCCCCccccccccccccCCccccCCC
Q 022560 85 WNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 151 (295)
Q Consensus 85 ~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~sigc~~ct~~~~~~~~~r~gr~~w~~~~~~ecglh 151 (295)
+|||++||+.|||+||.+++|||||||++||+||||.+||+|+.+++++|+|||+ +..|+|||||
T Consensus 162 v~Pi~~Wt~~dVw~Yi~~~~lP~npLY~~GY~siGc~~cT~~v~~~~~~R~gRw~--~~~~~eCglh 226 (226)
T TIGR02057 162 VNPLIDWTFEQVYQYLDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK--GKLKTECGIH 226 (226)
T ss_pred EeehhhCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCcCCCCCCCCCccCccCC--CCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999984 5678999999
No 5
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=100.00 E-value=2.2e-42 Score=294.91 Aligned_cols=140 Identities=52% Similarity=1.075 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHhcCCCCccccChhhhcchhchHHHHHHHhcCCEEEEeeeccCCCcccCCCCceecCCccccccCCCCC
Q 022560 2 FPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGS 81 (295)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~K~~pl~~~l~~~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.|+....+++.+++|+..|+.+.+..||+++|++||+++|+++.+||+|+|++|| .+|+++++++.++.+ +
T Consensus 52 ~~~~~~~~~~~~~~G~~~~~~~~~~~cc~~~K~~Pl~~~l~~~~~~i~G~Rr~Es-~~R~~~~~~~~~~~~--------~ 122 (191)
T TIGR02055 52 SPPPLTVEEQVKEYGLNLFYRSVPHECCGIRKVEPLKRALAGVSAWITGLRRDQS-PTRAQAPFLEIDEAF--------G 122 (191)
T ss_pred cCCcccHHHHHHHcCcccccccchHHHHHHHhHHHHHHHHhcCCEEEEEeccccC-chhcCCceeeecCCC--------C
Confidence 3555667788888999777766689999999999999999999999999999999 599999999988632 4
Q ss_pred EEEEeeCCCCCHHHHHHHHHHCCCCCCccccCCccccCCCCCCCCCCCCccccccccccccCCccccCC
Q 022560 82 LVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGL 150 (295)
Q Consensus 82 ~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~sigc~~ct~~~~~~~~~r~gr~~w~~~~~~ecgl 150 (295)
++++|||++||..|||+||++++||+||||++||+||||++||.|+.+++++|+|||||++..|+||||
T Consensus 123 ~~~~~Pi~~Wt~~dVw~Yi~~~~lp~npLY~~Gy~siGC~~Ct~~~~~~~~~r~gRw~~~~~~~~ecg~ 191 (191)
T TIGR02055 123 LVKINPLADWTSEDVWEYIADNELPYNPLHDRGYPSIGCEPCTRPVAPGEDPRAGRWWWEEAAKKECGL 191 (191)
T ss_pred eEEEEecccCCHHHHHHHHHHcCCCCChHHHcCCCCCCCcCCCCCCCCCCCccCcCcCCCCCCCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999988888999997
No 6
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=100.00 E-value=3.8e-38 Score=273.44 Aligned_cols=132 Identities=37% Similarity=0.690 Sum_probs=118.0
Q ss_pred HHHHHhcCCCCccccChhhhcchhchHHHHHHHhcCC--EEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEe
Q 022560 9 QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN 86 (295)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~c~~~~K~~pl~~~l~~~~--~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (295)
.++...+|.. +|..++..||+++|++||.++|++++ +||+|+|++||+ +|+++++++.++. +++++++
T Consensus 79 ~~~~~~~g~~-~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~-~R~~~~~~~~~~~--------~~~~~v~ 148 (212)
T TIGR00434 79 AEQAAKYGDK-LWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGP-SRANLSILNIDEK--------FGILKVL 148 (212)
T ss_pred HHHHHhcCCC-ccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCc-cccCCceeeecCC--------CCcEEEe
Confidence 3455667742 47778889999999999999999987 999999999995 9999998877642 3689999
Q ss_pred eCCCCCHHHHHHHHHHCCCCCCccccCCccccCCCCCCCCCCCCccccccccccccCCccccCCCC
Q 022560 87 PVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK 152 (295)
Q Consensus 87 Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~sigc~~ct~~~~~~~~~r~gr~~w~~~~~~ecglh~ 152 (295)
||++|++.|||+||..++|||||||++||+||||++||.|+.+++++|+||| .+..++|||||.
T Consensus 149 PI~dWt~~dVw~Yi~~~~lp~npLY~~Gy~siGc~~ct~~~~~~~~~r~gr~--~~~~~~ecg~~~ 212 (212)
T TIGR00434 149 PLIDWTWKDVYQYIDAHNLPYNPLHDQGYPSIGDYHSTRPVKEGEDERAGRW--KGKAKTECGLHE 212 (212)
T ss_pred ehhhCCHHHHHHHHHHcCCCCCchhhcCCCCcCCCCCCCCCCCCCCccCccC--CCCCCcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999997 466799999994
No 7
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.4e-37 Score=275.56 Aligned_cols=136 Identities=45% Similarity=0.840 Sum_probs=119.9
Q ss_pred HhcCCCCccccChhh-hcchhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCC
Q 022560 13 RSKGLFSFYEDGHQE-CCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA 89 (295)
Q Consensus 13 ~~~~~~~~~~~~~~~-c~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~ 89 (295)
..++... |..+... ||+++|++||++||+++ .+||+|+||+|| .+|+++++++.+..+ ++++|++||+
T Consensus 108 ~~~~~~~-~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes-~~Rak~~~~~~~~~~-------~~~~rv~Pl~ 178 (261)
T COG0175 108 EKYGGKL-WEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDES-PTRAKLPVVSFDSEF-------GESIRVNPLA 178 (261)
T ss_pred hhcccCC-CCCCcchhhhhhHhhhhHHHHHhhcCCceEEEecccccc-cccccCceeccccCc-------CCeEEEcchh
Confidence 4455543 4443455 99999999999999999 699999999999 599999999998643 4699999999
Q ss_pred CCCHHHHHHHHHHCCCCCCccccCCccccCCCCCCCCCCC-CccccccccccccCCccccCCCCCCCcc
Q 022560 90 NVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP-GQHEREGRWWWEDAKAKECGLHKGNIKQ 157 (295)
Q Consensus 90 ~W~~~dvw~y~~~~~~p~~~ly~~g~~sigc~~ct~~~~~-~~~~r~gr~~w~~~~~~ecglh~~~i~~ 157 (295)
+||..|||+||..++|||||||++||+||||.+||.|+.+ ++++|+|||++....++|||+|......
T Consensus 179 ~Wt~~dVw~Yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~~~~~~r~~rw~~~~~~~~E~g~~~~~~~~ 247 (261)
T COG0175 179 DWTELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKTECGLHRADDPD 247 (261)
T ss_pred cCCHHHHHHHHHHhCCCCCcHHhccCCccCcccCCCcCccccccHHHHhhccccchhhhhccccccccc
Confidence 9999999999999999999999999999999999999998 8999999998877779999999765444
No 8
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=100.00 E-value=3.1e-36 Score=266.14 Aligned_cols=119 Identities=57% Similarity=1.168 Sum_probs=110.9
Q ss_pred cChhhhcchhchHHHHHHHhcCCEEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCCCCCHHHHHHHHHH
Q 022560 23 DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRT 102 (295)
Q Consensus 23 ~~~~~c~~~~K~~pl~~~l~~~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~y~~~ 102 (295)
.++..||.++|+.||+++++++++|++|+|++|| ..|+.+++++.++ +++|++||++|++.|||+||..
T Consensus 121 ~~~~~cc~~~K~~pl~~~~~~~~~~itG~R~~es-~~R~~~~~~~~~~----------~~~rv~Pi~~Wt~~dV~~Yi~~ 189 (241)
T PRK02090 121 EDRDECCRIRKVEPLNRALAGLDAWITGLRREQS-GTRANLPVLEIDG----------GRFKINPLADWTNEDVWAYLKE 189 (241)
T ss_pred cCHHHHHHHHhhHHHHHHHhcCCCeEEEechhhC-chhccCceeeecC----------CeEEEeehhhCCHHHHHHHHHH
Confidence 5678999999999999999999999999999999 5999999887663 5899999999999999999999
Q ss_pred CCCCCCccccCCccccCCCCCCCCCCCCccccccccccccCCccccCCCCCC
Q 022560 103 MDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN 154 (295)
Q Consensus 103 ~~~p~~~ly~~g~~sigc~~ct~~~~~~~~~r~gr~~w~~~~~~ecglh~~~ 154 (295)
++|||||||++||+||||++||.|+.+++++|+|||| +..++|||||.++
T Consensus 190 ~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~gr~~--~~~~~ecg~~~~~ 239 (241)
T PRK02090 190 HDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGRWW--GGLKKECGLHEGN 239 (241)
T ss_pred cCCCCChHHHcCCCCcCCCCCCCCCCCCCCccccCCC--CCCCccCCCCCCC
Confidence 9999999999999999999999999999999999986 6668999999754
No 9
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.96 E-value=7.4e-29 Score=223.20 Aligned_cols=93 Identities=23% Similarity=0.364 Sum_probs=78.2
Q ss_pred cccChhhhcchhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCcee-------cCCcccc--------ccCCCCCEE
Q 022560 21 YEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQ-------VDPVFEG--------LEGGVGSLV 83 (295)
Q Consensus 21 ~~~~~~~c~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~-------~~~~~~~--------~~~~~~~~~ 83 (295)
|.+++..||.++|++||++||+++ ++||+|.||+|+ .+|+++++++ +|+++++ +....++++
T Consensus 113 ~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~-~sRak~~ifs~r~~~~~wD~~~qrPelw~~~n~~~~~g~~~ 191 (312)
T PRK12563 113 FRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEE-KSRAKERIFSFRSAFHRWDPKAQRPELWSLYNARLRRGESL 191 (312)
T ss_pred ccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHh-hhhccCceecccccccccCccccChhhhhhccccccCCceE
Confidence 356778899999999999999855 699999999999 5999999998 4544321 111123699
Q ss_pred EEeeCCCCCHHHHHHHHHHCCCCCCccccCC
Q 022560 84 KWNPVANVKGNDIWNFLRTMDVPINSLHSQG 114 (295)
Q Consensus 84 ~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g 114 (295)
|+|||++||+.|||.||..++|||||||+.+
T Consensus 192 RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~ 222 (312)
T PRK12563 192 RVFPLSNWTELDVWQYIAREKIPLVPLYFAK 222 (312)
T ss_pred EEecchhCCHHHHHHHHHHcCCCCCcchhcC
Confidence 9999999999999999999999999999986
No 10
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=99.94 E-value=6.6e-27 Score=209.89 Aligned_cols=121 Identities=26% Similarity=0.459 Sum_probs=98.2
Q ss_pred cCCCCccccChhhhcchhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCceec-------CCcccc--------ccC
Q 022560 15 KGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQV-------DPVFEG--------LEG 77 (295)
Q Consensus 15 ~~~~~~~~~~~~~c~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~~-------~~~~~~--------~~~ 77 (295)
+|+.+ +..++..||.++|++||+++|+++ ++||+|.||||+ .+|+++++++. |+++++ +..
T Consensus 90 ~g~~~-~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe-~sRake~i~s~r~~~~~wD~~~q~Pelw~~~~~~~ 167 (294)
T TIGR02039 90 DGINP-FTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEE-KSRAKERIFSFRNAFHQWDPKKQRPELWNLYNGRI 167 (294)
T ss_pred cCccc-cccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhh-hHhhcCceeeccccccccCccccCchhhhcccccc
Confidence 44433 344566799999999999999865 599999999999 69999988854 443221 111
Q ss_pred CCCCEEEEeeCCCCCHHHHHHHHHHCCCCCCccccC---------------------------------CccccCCCCCC
Q 022560 78 GVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQ---------------------------------GYISIGCEPCT 124 (295)
Q Consensus 78 ~~~~~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~---------------------------------g~~sigc~~ct 124 (295)
..+.++|++||++||+.|||.||..++|||||||.. +|+|+||+|||
T Consensus 168 ~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~r~rt~g~~~~t 247 (294)
T TIGR02039 168 SKGESVRVFPLSNWTELDIWRYIAAENIPIVPLYFAAKRPVVQRDGMLIMVDDVRMPLAPGEVVKERMVRFRTLGCYPLT 247 (294)
T ss_pred ccCCcEEEechhhCCHHHHHHHHHHcCCCCCcCeecCccceeeccCeEEecCccccCCCCCCcccccceeecccCcccCC
Confidence 123589999999999999999999999999999976 89999999999
Q ss_pred CCCCCC---------------ccccccc
Q 022560 125 RPVLPG---------------QHEREGR 137 (295)
Q Consensus 125 ~~~~~~---------------~~~r~gr 137 (295)
.++.++ ..||.||
T Consensus 248 ~~~~s~a~~~~~~~~e~~~~~~~er~~r 275 (294)
T TIGR02039 248 GAIESDAATVEEIIAETAAARTSERQGR 275 (294)
T ss_pred CcccCCCCCHHHHHHHHHhccCcccccc
Confidence 998875 5778787
No 11
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.92 E-value=9.6e-26 Score=203.98 Aligned_cols=114 Identities=28% Similarity=0.501 Sum_probs=94.5
Q ss_pred cChhhhcchhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCceec-------CCcccc--------ccCCCCCEEEE
Q 022560 23 DGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQV-------DPVFEG--------LEGGVGSLVKW 85 (295)
Q Consensus 23 ~~~~~c~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~~-------~~~~~~--------~~~~~~~~~~~ 85 (295)
.++..||+++|+.||+++++++ ++|++|.|+||+ .+|++.++++. |+++++ +....++++|+
T Consensus 105 ~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~-~~Ra~e~~fs~r~~~~~wd~~~q~Pelw~~~~~~~~~g~~~rV 183 (301)
T PRK05253 105 HGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEE-KSRAKERIFSFRDEFGQWDPKNQRPELWNLYNGRINKGEHIRV 183 (301)
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchh-hhhccCccccccccccccCccccChhhhhhccccccCCCeEEE
Confidence 3456899999999999999865 599999999999 59999988863 333211 01112358999
Q ss_pred eeCCCCCHHHHHHHHHHCCCCCCccccC---------C-----------------------ccccCCCCCCCCCCCC---
Q 022560 86 NPVANVKGNDIWNFLRTMDVPINSLHSQ---------G-----------------------YISIGCEPCTRPVLPG--- 130 (295)
Q Consensus 86 ~Pi~~W~~~dvw~y~~~~~~p~~~ly~~---------g-----------------------~~sigc~~ct~~~~~~--- 130 (295)
|||++|++.|||+||+.++|||||||.. | |+|+||++||.++.++
T Consensus 184 ~PL~~Wte~DIw~Yi~~~~IP~~pLY~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~r~~g~~~~t~~~~s~a~~ 263 (301)
T PRK05253 184 FPLSNWTELDIWQYIERENIPIVPLYFAHERPVVERDGMLIMVDDRMPLRPGEVVEERMVRFRTLGCYPCTGAVESEAAT 263 (301)
T ss_pred eehhhCCHHHHHHHHHHcCCCCCcccccCCCceEeECCeEEecccccCCCCCCcceeeeeeeeccCCccCCCcccCCCCC
Confidence 9999999999999999999999999995 4 9999999999998876
Q ss_pred ------------ccccccc
Q 022560 131 ------------QHEREGR 137 (295)
Q Consensus 131 ------------~~~r~gr 137 (295)
..||.||
T Consensus 264 ~~~~~~e~~~~~~~er~~r 282 (301)
T PRK05253 264 LEEIIAEMLVTRTSERGGR 282 (301)
T ss_pred HHHHHHHHHhccCcccccc
Confidence 4778887
No 12
>PRK08557 hypothetical protein; Provisional
Probab=99.91 E-value=6.6e-25 Score=206.18 Aligned_cols=108 Identities=24% Similarity=0.398 Sum_probs=90.3
Q ss_pred HHHHhcCCCCccccChhhhcchhchHHHHHHHhc---CC--EEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEE
Q 022560 10 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG---LR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVK 84 (295)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~c~~~~K~~pl~~~l~~---~~--~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 84 (295)
+....+|. +..+...||+++|+.||+++|++ .+ ++++|+|++|| .+|++++..+.++. .+++++
T Consensus 247 ~~~~~~G~---Ps~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES-~~Ra~~~~~~~~~~-------~~~~~~ 315 (417)
T PRK08557 247 ENLEKEGI---PTKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYES-FTRANLDYERKSGF-------IDFQTN 315 (417)
T ss_pred HHHhhccC---CcccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccc-hhhccCceeccccc-------ccCcee
Confidence 33444554 33456789999999999999987 32 89999999999 59999987654421 135789
Q ss_pred EeeCCCCCHHHHHHHHHHCCCCCCccccCCccccCCCCCCCCCC
Q 022560 85 WNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL 128 (295)
Q Consensus 85 ~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~sigc~~ct~~~~ 128 (295)
++||++||+.|||+||.+|+|||||||++||.|+||++||.+..
T Consensus 316 i~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~ 359 (417)
T PRK08557 316 VFPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLCPSALN 359 (417)
T ss_pred EEecccCCHHHHHHHHHHcCCCCCchhhCCCCCCCccCCCCccH
Confidence 99999999999999999999999999999999999999999755
No 13
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.91 E-value=2.8e-25 Score=186.09 Aligned_cols=92 Identities=40% Similarity=0.905 Sum_probs=71.3
Q ss_pred hhcchhchHHHHHHHhcCC--EEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCCCCCHHHHHHHHHHCC
Q 022560 27 ECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMD 104 (295)
Q Consensus 27 ~c~~~~K~~pl~~~l~~~~--~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~y~~~~~ 104 (295)
.||.++|+.|++++|++++ ++++|+|++||+ .|++...++.+.. ++..++++||++|+.+|||+||++++
T Consensus 81 ~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~-~R~~~~~~~~~~~-------~~~~~~~~Pi~~wt~~dV~~yi~~~~ 152 (174)
T PF01507_consen 81 WCCSILKVKPLRRALKEYGKDVWIIGVRADESP-RRAKLPMFEFDED-------NPKIIRVYPIADWTEEDVWDYIKANG 152 (174)
T ss_dssp HHHHHHTHHHHHHHHHHTTESEEE----TTSTT-GCCGSSSEEEETT-------TTSEEEE-TTTT--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh-hhhhchhhhcccc-------cCCEEEEEehhhCCHHHHHHHHHHhc
Confidence 6999999999999999987 999999999994 9999998887763 35699999999999999999999999
Q ss_pred CCCCccccCCccccCCCCCCCC
Q 022560 105 VPINSLHSQGYISIGCEPCTRP 126 (295)
Q Consensus 105 ~p~~~ly~~g~~sigc~~ct~~ 126 (295)
||+||||++||.|+||++||.|
T Consensus 153 l~~~~lY~~g~~r~GC~~C~~~ 174 (174)
T PF01507_consen 153 LPYNPLYDKGYSRVGCWPCTRP 174 (174)
T ss_dssp --B-HHHHCT-SS--BTTTB--
T ss_pred CCCcHHHHCcCCCcCCccCCCC
Confidence 9999999999999999999975
No 14
>PRK13794 hypothetical protein; Provisional
Probab=99.90 E-value=6.6e-24 Score=203.72 Aligned_cols=108 Identities=25% Similarity=0.368 Sum_probs=92.1
Q ss_pred HHHHHhcCCCCccccChhhhcchhchHHHHHHHhcC----CEEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEE
Q 022560 9 QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL----RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVK 84 (295)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~c~~~~K~~pl~~~l~~~----~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 84 (295)
.+....+|. ...+...||.++|+.||+++|++. .++++|+|++|| .+|++++.++.++ ..++.++
T Consensus 313 ~~~~~~~G~---P~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES-~~Ra~~~~~~~~~-------~~~~~~~ 381 (479)
T PRK13794 313 WEKLEEYGP---PARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYES-FNRSKKPRIWRNP-------YIKKQIL 381 (479)
T ss_pred HHHHHhcCC---CCCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCcc-HhHhcCccccccc-------CcCCcEE
Confidence 334445554 334567899999999999999873 389999999999 5999999887664 2357899
Q ss_pred EeeCCCCCHHHHHHHHHHCCCCCCccccCCccccCCCCCCCCC
Q 022560 85 WNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 127 (295)
Q Consensus 85 ~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~sigc~~ct~~~ 127 (295)
++||++||..|||+||..++|||||||++||.|+||++||...
T Consensus 382 ~~PI~~Wt~~dVw~Yi~~~~lp~npLY~~G~~riGC~~Cp~~~ 424 (479)
T PRK13794 382 AAPILHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMCPAME 424 (479)
T ss_pred EechHhCCHHHHHHHHHHcCCCCChHHHCCCCCCccccCcCcC
Confidence 9999999999999999999999999999999999999999953
No 15
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.89 E-value=1.3e-22 Score=158.48 Aligned_cols=109 Identities=20% Similarity=0.312 Sum_probs=96.0
Q ss_pred ccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCC
Q 022560 179 IFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL 258 (295)
Q Consensus 179 ~~~~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V 258 (295)
+...+.|++|++++|++++...++++++||+|||+||++|+.+.|.|+++++.+++ .+.|++||++++ .+++.++|+|
T Consensus 5 ~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~-~~l~~~~~~I 82 (113)
T cd03006 5 FSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWP-QGKCRKQKHF 82 (113)
T ss_pred cCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCC-hHHHHHhcCC
Confidence 34457899999999999855556899999999999999999999999999999987 699999999998 8888348999
Q ss_pred CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 259 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 259 ~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
.++||+++|++|+. +..|.| .++.+.|..|+
T Consensus 83 ~~~PTl~lf~~g~~-~~~y~G-~~~~~~i~~~~ 113 (113)
T cd03006 83 FYFPVIHLYYRSRG-PIEYKG-PMRAPYMEKFV 113 (113)
T ss_pred cccCEEEEEECCcc-ceEEeC-CCCHHHHHhhC
Confidence 99999999998875 688888 79999998873
No 16
>PRK13795 hypothetical protein; Provisional
Probab=99.87 E-value=1.7e-22 Score=200.31 Aligned_cols=97 Identities=29% Similarity=0.520 Sum_probs=87.1
Q ss_pred cChhhhcchhchHHHHHHHhcC--C--EEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCCCCCHHHHHH
Q 022560 23 DGHQECCRVRKVRPLRRALKGL--R--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 98 (295)
Q Consensus 23 ~~~~~c~~~~K~~pl~~~l~~~--~--~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~ 98 (295)
.+...||+++|+.||+++|++. . ++|+|+|++|| .+|++.+.++.++. .+++++++||++||+.|||.
T Consensus 320 ~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES-~~R~~~~~~~~~~~-------~~~~~~~~PI~~Wt~~dVw~ 391 (636)
T PRK13795 320 RDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYES-FSRAKSPRVWRNPW-------VPNQIGASPIQDWTALEVWL 391 (636)
T ss_pred cccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccch-HHHhhCcccccCCC-------CCCcEEEechHhCCHHHHHH
Confidence 4566899999999999999986 2 78999999999 59999998876642 26789999999999999999
Q ss_pred HHHHCCCCCCccccCCccccCCCCCCCCC
Q 022560 99 FLRTMDVPINSLHSQGYISIGCEPCTRPV 127 (295)
Q Consensus 99 y~~~~~~p~~~ly~~g~~sigc~~ct~~~ 127 (295)
||..++|||||||++||.||||++||...
T Consensus 392 YI~~~~lp~npLY~~Gy~riGC~~Cp~~~ 420 (636)
T PRK13795 392 YIFWRKLPYNPLYERGFDRIGCWLCPSSS 420 (636)
T ss_pred HHHHhCCCCChHHHCCCCCCCccCCCCCC
Confidence 99999999999999999999999999953
No 17
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.87 E-value=2.2e-21 Score=148.51 Aligned_cols=99 Identities=27% Similarity=0.640 Sum_probs=90.6
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
.|++|+.++|++.+. ++++++|+|||+||++|+.+.|.|+++++.+++ .+.|++|||+++ +.++ ++++|.++||
T Consensus 2 ~~~~l~~~~f~~~v~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~Pt 75 (101)
T cd03003 2 EIVTLDRGDFDAAVN---SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-RMLC-RSQGVNSYPS 75 (101)
T ss_pred CeEEcCHhhHHHHhc---CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-HHHH-HHcCCCccCE
Confidence 578899999999875 679999999999999999999999999999988 699999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHH
Q 022560 264 ILFFPKHSSKPIKYPSERRDVDSLMAF 290 (295)
Q Consensus 264 i~~~~~g~~~~~~~~gg~~~~e~l~~f 290 (295)
+++|++|+. +..|.| .++.++|.+|
T Consensus 76 ~~~~~~g~~-~~~~~G-~~~~~~l~~f 100 (101)
T cd03003 76 LYVFPSGMN-PEKYYG-DRSKESLVKF 100 (101)
T ss_pred EEEEcCCCC-cccCCC-CCCHHHHHhh
Confidence 999998875 667877 7999999887
No 18
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.86 E-value=2.8e-21 Score=148.65 Aligned_cols=102 Identities=34% Similarity=0.661 Sum_probs=91.8
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
.|++++.++|++++. +++++++|+|||+||++|+.+.|.|+++++.+.+ .+.|++||++++ .+++ ++|+|.++||
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~i~~~Pt 76 (104)
T cd03004 2 SVITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKY-ESLC-QQANIRAYPT 76 (104)
T ss_pred cceEcCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCch-HHHH-HHcCCCcccE
Confidence 578899999999875 4577999999999999999999999999999977 799999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCC-HHHHHHHH
Q 022560 264 ILFFPKHSSKPIKYPSERRD-VDSLMAFV 291 (295)
Q Consensus 264 i~~~~~g~~~~~~~~gg~~~-~e~l~~fi 291 (295)
+++|++|++.+..|.| ..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~~G-~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNG-WHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccC-CCCCHHHHHhhC
Confidence 9999998556888988 566 99999885
No 19
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.86 E-value=5.3e-21 Score=148.30 Aligned_cols=102 Identities=27% Similarity=0.544 Sum_probs=91.5
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-----CCeEEEEEEcCCCcHHHHHHhcCC
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-----NGVKVGKFRADGDQKEYAKQKLQL 258 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~-----~~v~~~~vd~~~~~~~l~~~~~~V 258 (295)
.|+++++++|++++. .+++++|+|||+||++|+.+.|.|+++++.+++ ..+.|++||++++ .+++ ++|+|
T Consensus 2 ~v~~l~~~~f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~-~~~~v 76 (108)
T cd02996 2 EIVSLTSGNIDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIA-DRYRI 76 (108)
T ss_pred ceEEcCHhhHHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHH-HhCCC
Confidence 578999999999875 788999999999999999999999999988753 1589999999999 8999 99999
Q ss_pred CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 259 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 259 ~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
+++||+++|++|+.....|.| .++.++|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g-~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRG-QRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCcceecCC-CCCHHHHHhhC
Confidence 999999999999854677887 89999999986
No 20
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.2e-21 Score=154.41 Aligned_cols=104 Identities=20% Similarity=0.357 Sum_probs=93.6
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
.+..++..+|++.+ .+++.||||+|||+||+||+.+.|.++++...|.+ .+.|++||.|++ .+++ .+|+|..+||
T Consensus 44 ~~~~~s~~~~~~~V--i~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~-~ela-~~Y~I~avPt 118 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKV--INSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEH-PELA-EDYEISAVPT 118 (150)
T ss_pred cccccCHHHHHHHH--HccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccc-cchH-hhcceeeeeE
Confidence 45567888998866 47899999999999999999999999999999988 899999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 264 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 264 i~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+++|++|++ ...+.| ..+.+.|.++|+++
T Consensus 119 vlvfknGe~-~d~~vG-~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 119 VLVFKNGEK-VDRFVG-AVPKEQLRSLIKKF 147 (150)
T ss_pred EEEEECCEE-eeeecc-cCCHHHHHHHHHHH
Confidence 999999985 445665 79999999999875
No 21
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.85 E-value=1.4e-20 Score=146.38 Aligned_cols=108 Identities=68% Similarity=1.119 Sum_probs=94.4
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
.|++++.++|+.++...++++++||.||++||++|+.+.|.|.++++.+++.++.++.||++.++..++.+.++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 57889999999988655678999999999999999999999999999998756999999999843677823599999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 264 ILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 264 i~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
+++|++|+.....|.|+.++.++|+.||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999988767889998458999999886
No 22
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.85 E-value=1.9e-20 Score=142.82 Aligned_cols=103 Identities=30% Similarity=0.606 Sum_probs=94.4
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeE
Q 022560 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264 (295)
Q Consensus 185 v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti 264 (295)
|..+|+++|++.+. .+++++||+||++||++|+.+.|.|.++++.+.+ ++.|+.||++++ ..++ ++|+|.++||+
T Consensus 1 v~~lt~~~f~~~i~--~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFIN--ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELC-KKYGVKSVPTI 75 (103)
T ss_dssp SEEESTTTHHHHHT--TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHH-HHTTCSSSSEE
T ss_pred CEECCHHHHHHHHH--ccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhh-hccCCCCCCEE
Confidence 57899999999886 2489999999999999999999999999999997 799999999999 9999 99999999999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 265 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 265 ~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++|++|+. ...+.| ..+.++|.+||++.
T Consensus 76 ~~~~~g~~-~~~~~g-~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 76 IFFKNGKE-VKRYNG-PRNAESLIEFIEKH 103 (103)
T ss_dssp EEEETTEE-EEEEES-SSSHHHHHHHHHHH
T ss_pred EEEECCcE-EEEEEC-CCCHHHHHHHHHcC
Confidence 99999986 457777 79999999999873
No 23
>PRK08576 hypothetical protein; Provisional
Probab=99.85 E-value=2.2e-21 Score=182.90 Aligned_cols=96 Identities=22% Similarity=0.382 Sum_probs=84.4
Q ss_pred ChhhhcchhchHHHHHHHhcCC--EEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCCCCCHHHHHHHHH
Q 022560 24 GHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLR 101 (295)
Q Consensus 24 ~~~~c~~~~K~~pl~~~l~~~~--~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~y~~ 101 (295)
.+..||..+|+.||.+++++++ +|++|.|++|| ..|+..+.+..+. .++++.++++||++|++.|||.|+.
T Consensus 309 ~~~rcCt~lK~~pL~raake~g~~~iatG~R~dES-~~R~~~p~v~~~~------~~~~~v~rI~PL~~Wte~DV~~YI~ 381 (438)
T PRK08576 309 HSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGES-ARRRLRPPVVERK------TNFGKILVVMPIKFWSGAMVQLYIL 381 (438)
T ss_pred cccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHHh-HHhhcCCcccccc------cCCCCeEEEeChhhCCHHHHHHHHH
Confidence 4567999999999999999874 89999999998 5898887665442 1345789999999999999999999
Q ss_pred HCCCCCCccccCCccccCCCCCCCC
Q 022560 102 TMDVPINSLHSQGYISIGCEPCTRP 126 (295)
Q Consensus 102 ~~~~p~~~ly~~g~~sigc~~ct~~ 126 (295)
.++||+||||++||+||||++||..
T Consensus 382 ~~gLP~npLY~~Gy~rIGC~~Cp~~ 406 (438)
T PRK08576 382 MNGLELNPLYYKGFYRLGCYICPSL 406 (438)
T ss_pred HhCCCCCcHHhCCCCccCCcCCcch
Confidence 9999999999999999999999874
No 24
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.84 E-value=1.6e-20 Score=147.86 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=93.7
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChh--HH--HHHHHHHHHHHHh--cCCCeEEEEEEcCCCcHHHHHHh
Q 022560 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQF--CQ--AMEGSYVELADKL--AGNGVKVGKFRADGDQKEYAKQK 255 (295)
Q Consensus 182 ~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~--C~--~~~p~~~~la~~~--~~~~v~~~~vd~~~~~~~l~~~~ 255 (295)
...|..||++||++.+. +++.++|++||++||++ |+ .+.|.+.+++.++ .+ ++.|++||++++ ++++ ++
T Consensus 8 ~~~v~~lt~~nF~~~v~--~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~-~~La-~~ 82 (120)
T cd03065 8 KDRVIDLNEKNYKQVLK--KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKD-AKVA-KK 82 (120)
T ss_pred CcceeeCChhhHHHHHH--hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCC-HHHH-HH
Confidence 35788999999999875 46679999999999987 99 8899999999988 55 799999999999 9999 99
Q ss_pred cCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 256 LQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 256 ~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
|+|+++||+++|++|+ .+.+.| .++.+.|.+||+++
T Consensus 83 ~~I~~iPTl~lfk~G~--~v~~~G-~~~~~~l~~~l~~~ 118 (120)
T cd03065 83 LGLDEEDSIYVFKDDE--VIEYDG-EFAADTLVEFLLDL 118 (120)
T ss_pred cCCccccEEEEEECCE--EEEeeC-CCCHHHHHHHHHHH
Confidence 9999999999999998 456887 79999999999986
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.84 E-value=3.1e-20 Score=142.00 Aligned_cols=100 Identities=26% Similarity=0.557 Sum_probs=89.3
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
.|++++.++|++++. ++ +||+|||+||++|+.+.|.|+++++.+++.++.|++||++++ ..++ ++|+|.++||
T Consensus 2 ~v~~l~~~~f~~~~~----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~-~~~~i~~~Pt 74 (101)
T cd02994 2 NVVELTDSNWTLVLE----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLS-GRFFVTALPT 74 (101)
T ss_pred ceEEcChhhHHHHhC----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHH-HHcCCcccCE
Confidence 578999999998763 33 899999999999999999999999988765699999999998 8999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 022560 264 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 264 i~~~~~g~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
+++|++|+ +..+.| .++.++|.+||++
T Consensus 75 ~~~~~~g~--~~~~~G-~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGV--FRRYQG-PRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCC--EEEecC-CCCHHHHHHHHhC
Confidence 99998886 577887 7999999999874
No 26
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.83 E-value=3.4e-20 Score=144.71 Aligned_cols=105 Identities=23% Similarity=0.341 Sum_probs=89.2
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEE
Q 022560 186 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 186 ~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~ 265 (295)
..++.++|.+.+.....+++|||+|||+||++|+.+.|.++++++.+.+.++.|++||++++ ..++ ++++|.++||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~-~~~~V~~~Pt~~ 84 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLA-RKLGAHSVPAIV 84 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHH-HHcCCccCCEEE
Confidence 34677888765432346899999999999999999999999999999864699999999998 8999 999999999999
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 266 FFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 266 ~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+|++|+. +..+.| ..+.++|.+||+++
T Consensus 85 i~~~g~~-~~~~~G-~~~~~~l~~~i~~~ 111 (111)
T cd02963 85 GIINGQV-TFYHDS-SFTKQHVVDFVRKL 111 (111)
T ss_pred EEECCEE-EEEecC-CCCHHHHHHHHhcC
Confidence 9998863 444455 78999999999875
No 27
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.82 E-value=1.1e-19 Score=140.59 Aligned_cols=102 Identities=25% Similarity=0.505 Sum_probs=91.5
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC--CcHHHHHHhcCCCCCC
Q 022560 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--DQKEYAKQKLQLGSFP 262 (295)
Q Consensus 185 v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~--~~~~l~~~~~~V~~~P 262 (295)
|+++++++|++.+. +.+++++|+|||+||++|+.+.|.|+++++.+.+ .+.|+.||++. + ..++ ++|+|.++|
T Consensus 2 v~~l~~~~~~~~i~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~-~~~~-~~~~i~~~P 76 (109)
T cd03002 2 VYELTPKNFDKVVH--NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKN-KPLC-GKYGVQGFP 76 (109)
T ss_pred eEEcchhhHHHHHh--cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcccc-HHHH-HHcCCCcCC
Confidence 67899999999875 4577899999999999999999999999999987 79999999998 6 8899 999999999
Q ss_pred eEEEEeCCC----CCeeecCCCCCCHHHHHHHHH
Q 022560 263 TILFFPKHS----SKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 263 ti~~~~~g~----~~~~~~~gg~~~~e~l~~fi~ 292 (295)
|+++|++|+ .....|.| .++.++|.+||.
T Consensus 77 t~~~~~~~~~~~~~~~~~~~G-~~~~~~l~~fi~ 109 (109)
T cd03002 77 TLKVFRPPKKASKHAVEDYNG-ERSAKAIVDFVL 109 (109)
T ss_pred EEEEEeCCCcccccccccccC-ccCHHHHHHHhC
Confidence 999999986 34677887 799999999983
No 28
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.2e-19 Score=160.07 Aligned_cols=106 Identities=23% Similarity=0.432 Sum_probs=97.9
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
.|+++|..||...+......+||||+||||||++|+.+.|.+++++..|++ .+.+++||||.+ +.++ .+|+|+++||
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~-p~vA-aqfgiqsIPt 100 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAE-PMVA-AQFGVQSIPT 100 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcc-hhHH-HHhCcCcCCe
Confidence 389999999999887666778999999999999999999999999999999 899999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 264 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 264 i~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++.|++|+. +..|.| ....+.|.+||+++
T Consensus 101 V~af~dGqp-VdgF~G-~qPesqlr~~ld~~ 129 (304)
T COG3118 101 VYAFKDGQP-VDGFQG-AQPESQLRQFLDKV 129 (304)
T ss_pred EEEeeCCcC-ccccCC-CCcHHHHHHHHHHh
Confidence 999999995 666776 78889999999875
No 29
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.81 E-value=3.7e-19 Score=136.08 Aligned_cols=101 Identities=30% Similarity=0.592 Sum_probs=91.6
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeE
Q 022560 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264 (295)
Q Consensus 185 v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti 264 (295)
|.++++++|++.+. +.+++++|+||++||++|+.+.|.|.++++.+.+ .+.|+.+|++++ .+++ ++|+|.++|++
T Consensus 2 v~~l~~~~~~~~i~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~-~~~~-~~~~i~~~P~~ 76 (103)
T cd03001 2 VVELTDSNFDKKVL--NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH-QSLA-QQYGVRGFPTI 76 (103)
T ss_pred eEEcCHHhHHHHHh--cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch-HHHH-HHCCCCccCEE
Confidence 67899999999875 3466799999999999999999999999999987 799999999999 8999 99999999999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 265 LFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 265 ~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
++|++|......|.| ..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g-~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQG-GRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCC-CCCHHHHHHHh
Confidence 999999666888998 69999999986
No 30
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.81 E-value=2.2e-19 Score=137.50 Aligned_cols=92 Identities=24% Similarity=0.437 Sum_probs=80.8
Q ss_pred cHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcC-CCcHHHHHHhcCCCCCCeEEEEeCC
Q 022560 192 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQLGSFPTILFFPKH 270 (295)
Q Consensus 192 ~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~~~~~V~~~Pti~~~~~g 270 (295)
++.+++. ..++++|+|+|||+||++|+.+.|.|+++++.+++ +.++.||.+ ++ +.++ ++|+|.++||+++|++|
T Consensus 8 ~~~~~~~-~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~-~~l~-~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 8 IALDLMA-FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIK-PSLL-SRYGVVGFPTILLFNST 82 (100)
T ss_pred HHHHHHH-hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCC-HHHH-HhcCCeecCEEEEEcCC
Confidence 3444443 35789999999999999999999999999999976 889999998 66 8999 99999999999999988
Q ss_pred CCCeeecCCCCCCHHHHHHHH
Q 022560 271 SSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 271 ~~~~~~~~gg~~~~e~l~~fi 291 (295)
....+.| .++.++|.+||
T Consensus 83 --~~~~~~G-~~~~~~l~~f~ 100 (100)
T cd02999 83 --PRVRYNG-TRTLDSLAAFY 100 (100)
T ss_pred --ceeEecC-CCCHHHHHhhC
Confidence 3788988 79999999985
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.81 E-value=3.5e-19 Score=136.01 Aligned_cols=99 Identities=28% Similarity=0.604 Sum_probs=88.2
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHhcCCCCCC
Q 022560 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFP 262 (295)
Q Consensus 185 v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~V~~~P 262 (295)
++++++++|++.+. ++.++|+|||+||++|+.+.|.|.++++.+++ ..+.|+.||++++ ..++ ++|+|.++|
T Consensus 2 ~~~l~~~~f~~~~~----~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~v~~~P 75 (102)
T cd03005 2 VLELTEDNFDHHIA----EGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELC-SEFQVRGYP 75 (102)
T ss_pred eeECCHHHHHHHhh----cCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhH-hhcCCCcCC
Confidence 67899999999885 34699999999999999999999999999976 4699999999999 8999 999999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 263 TILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 263 ti~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
|+++|++|+. ...+.| ..+.++|.+||
T Consensus 76 t~~~~~~g~~-~~~~~G-~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEK-VDKYKG-TRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCCe-eeEeeC-CCCHHHHHhhC
Confidence 9999998874 667887 79999998885
No 32
>PRK10996 thioredoxin 2; Provisional
Probab=99.80 E-value=2e-18 Score=140.04 Aligned_cols=105 Identities=16% Similarity=0.405 Sum_probs=93.2
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCC
Q 022560 183 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262 (295)
Q Consensus 183 ~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~P 262 (295)
..+++++..+|++++. ++++|+|+||++||++|+.+.|.|.++++.+.+ ++.|++||++++ ++++ ++|+|.++|
T Consensus 35 ~~~i~~~~~~~~~~i~---~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~-~~l~-~~~~V~~~P 108 (139)
T PRK10996 35 GEVINATGETLDKLLQ---DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAE-RELS-ARFRIRSIP 108 (139)
T ss_pred CCCEEcCHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCC-HHHH-HhcCCCccC
Confidence 3467789999999875 789999999999999999999999999999887 799999999999 9999 999999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 022560 263 TILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 295 (295)
Q Consensus 263 ti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l~ 295 (295)
|+++|++|+. +..+.| ..+.+.|.+||+++.
T Consensus 109 tlii~~~G~~-v~~~~G-~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 109 TIMIFKNGQV-VDMLNG-AVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEEECCEE-EEEEcC-CCCHHHHHHHHHHhC
Confidence 9999998773 555566 789999999999863
No 33
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.80 E-value=7.1e-19 Score=136.67 Aligned_cols=79 Identities=13% Similarity=0.260 Sum_probs=70.8
Q ss_pred cccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeC
Q 022560 190 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 269 (295)
Q Consensus 190 ~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~ 269 (295)
.++|++.+. .+.+++|||+|||+||++|+.|.|.|+++++++.+ .+.|++||++++ ++++ .+|+|.++||+++|++
T Consensus 2 ~~~~~~~i~-~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~-~~la-~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 2 GWAVDQAIL-SEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEV-PDFN-KMYELYDPPTVMFFFR 77 (114)
T ss_pred HHHHHHHHh-ccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCC-HHHH-HHcCCCCCCEEEEEEC
Confidence 356777664 23578999999999999999999999999999987 689999999999 9999 9999999999999999
Q ss_pred CCC
Q 022560 270 HSS 272 (295)
Q Consensus 270 g~~ 272 (295)
|+.
T Consensus 78 G~~ 80 (114)
T cd02954 78 NKH 80 (114)
T ss_pred CEE
Confidence 985
No 34
>PHA02278 thioredoxin-like protein
Probab=99.80 E-value=5.2e-19 Score=135.92 Aligned_cols=94 Identities=11% Similarity=0.171 Sum_probs=78.8
Q ss_pred cccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcCCCCCCeEEE
Q 022560 190 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 190 ~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~V~~~Pti~~ 266 (295)
.++|.+.+. ++++|||+|||+||++|+.+.|.|+++++.+.. .+.|++||++.+. .+++ ++|+|.++||+++
T Consensus 4 ~~~~~~~i~---~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~-~~~~I~~iPT~i~ 78 (103)
T PHA02278 4 LVDLNTAIR---QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAV-KLFDIMSTPVLIG 78 (103)
T ss_pred HHHHHHHHh---CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHH-HHCCCccccEEEE
Confidence 456777764 889999999999999999999999999988655 5789999999752 5789 9999999999999
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHH
Q 022560 267 FPKHSSKPIKYPSERRDVDSLMAF 290 (295)
Q Consensus 267 ~~~g~~~~~~~~gg~~~~e~l~~f 290 (295)
|++|+. +....| ..+.+.|.++
T Consensus 79 fk~G~~-v~~~~G-~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQL-VKKYED-QVTPMQLQEL 100 (103)
T ss_pred EECCEE-EEEEeC-CCCHHHHHhh
Confidence 999974 445555 6888887764
No 35
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.80 E-value=7.8e-19 Score=132.92 Aligned_cols=95 Identities=18% Similarity=0.330 Sum_probs=82.7
Q ss_pred cHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCC
Q 022560 192 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 192 ~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~ 271 (295)
+|++.+. .+.++++||+|||+||++|+.+.|.++++++.+.+ .+.|++||++++ ..++ ++|+|.++||+++|++|+
T Consensus 2 ~f~~~i~-~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-~~l~-~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 2 NFQQVLQ-ESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQ-PQIA-QQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred ChHHHHH-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCC-HHHH-HHcCCCCCCEEEEEeCCE
Confidence 5676664 23478999999999999999999999999999987 699999999999 9999 999999999999999876
Q ss_pred CCeeecCCCCCCHHHHHHHHH
Q 022560 272 SKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 272 ~~~~~~~gg~~~~e~l~~fi~ 292 (295)
. ...+.| ..+.++|.+||+
T Consensus 78 ~-~~~~~g-~~~~~~l~~~l~ 96 (96)
T cd02956 78 P-VDGFQG-AQPEEQLRQMLD 96 (96)
T ss_pred E-eeeecC-CCCHHHHHHHhC
Confidence 3 455766 789999999874
No 36
>PRK09381 trxA thioredoxin; Provisional
Probab=99.80 E-value=1.6e-18 Score=134.40 Aligned_cols=106 Identities=24% Similarity=0.397 Sum_probs=93.0
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCC
Q 022560 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 261 (295)
Q Consensus 182 ~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~ 261 (295)
+..|+++++++|.+.+. +.+++++|+||++||++|+.+.|.|+++++.+.+ ++.|+.+|++.. ..++ ++|+|+++
T Consensus 2 ~~~v~~~~~~~~~~~v~--~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~ 76 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-PGTA-PKYGIRGI 76 (109)
T ss_pred CCcceeeChhhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC-hhHH-HhCCCCcC
Confidence 45788999999987653 4688999999999999999999999999999988 799999999999 8999 99999999
Q ss_pred CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 262 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 262 Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
||+++|++|+. ...+.| ..+.++|.++|++.
T Consensus 77 Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~i~~~ 107 (109)
T PRK09381 77 PTLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN 107 (109)
T ss_pred CEEEEEeCCeE-EEEecC-CCCHHHHHHHHHHh
Confidence 99999998873 445666 68899999999864
No 37
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.80 E-value=9.9e-19 Score=151.97 Aligned_cols=108 Identities=31% Similarity=0.624 Sum_probs=95.3
Q ss_pred CCCceecCcccHHHHHhhc--CCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCC
Q 022560 182 SQNLVTLNRTGMENLARLD--HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 259 (295)
Q Consensus 182 ~~~v~~lt~~~f~~~i~~~--~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~ 259 (295)
.+.|+++++++|++++... ..+++|+|+|||+||++|+.+.|.|+++++.+++ .+.|+.||++++ .+++ ++|+|+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~-~~l~-~~~~I~ 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA-LNLA-KRFAIK 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc-HHHH-HHcCCC
Confidence 3568999999999987532 1368999999999999999999999999999988 799999999999 9999 999999
Q ss_pred CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 260 ~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++||+++|++|+ ++.+.+|.++.++|.+|+.+.
T Consensus 106 ~~PTl~~f~~G~--~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 106 GYPTLLLFDKGK--MYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred cCCEEEEEECCE--EEEeeCCCCCHHHHHHHHHHH
Confidence 999999999887 566666589999999998753
No 38
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.79 E-value=9.8e-19 Score=134.32 Aligned_cols=98 Identities=18% Similarity=0.297 Sum_probs=84.3
Q ss_pred cCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEE
Q 022560 188 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 267 (295)
Q Consensus 188 lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~ 267 (295)
-+.++|++++. ++++++|+|||+||++|+.+.|.|.++++.+++..+.|+.+|++ + .+++ ++|+|+++||+++|
T Consensus 5 ~~~~~~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~~~-~~~~v~~~Pt~~~~ 78 (102)
T cd02948 5 NNQEEWEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-IDTL-KRYRGKCEPTFLFY 78 (102)
T ss_pred cCHHHHHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HHHH-HHcCCCcCcEEEEE
Confidence 46688888775 78999999999999999999999999999998645899999999 5 7889 99999999999999
Q ss_pred eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 268 PKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 268 ~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++|+. +....| .+.+.|.++|+++
T Consensus 79 ~~g~~-~~~~~G--~~~~~~~~~i~~~ 102 (102)
T cd02948 79 KNGEL-VAVIRG--ANAPLLNKTITEL 102 (102)
T ss_pred ECCEE-EEEEec--CChHHHHHHHhhC
Confidence 98873 334444 5889999999875
No 39
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.78 E-value=2e-18 Score=132.02 Aligned_cols=102 Identities=34% Similarity=0.716 Sum_probs=89.7
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHHHHhcCCCCCC
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFP 262 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~V~~~P 262 (295)
.|.+|+.++|++.+. +.+++++|+||++||++|+.+.|.+.++++.+++ ..+.|+++|++.+ +++ ..+++.++|
T Consensus 1 ~v~~l~~~~f~~~i~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~-~~~~~~~~P 75 (104)
T cd02995 1 PVKVVVGKNFDEVVL--DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVP-SEFVVDGFP 75 (104)
T ss_pred CeEEEchhhhHHHHh--CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhh-hhccCCCCC
Confidence 367899999999875 3568999999999999999999999999999987 5799999999987 577 789999999
Q ss_pred eEEEEeCCC-CCeeecCCCCCCHHHHHHHH
Q 022560 263 TILFFPKHS-SKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 263 ti~~~~~g~-~~~~~~~gg~~~~e~l~~fi 291 (295)
|+++|.+|+ .....|.| ..+.++|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g-~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEG-DRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccC-CcCHHHHHhhC
Confidence 999999887 34677888 79999999986
No 40
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.78 E-value=2e-18 Score=132.81 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=81.8
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc--HHHHHHhcCCCCCCeEEE
Q 022560 189 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 189 t~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~V~~~Pti~~ 266 (295)
+.++|++++. ...+++|||+|||+||++|+.+.|.|+++++.+. .+.|++||++++. .+++ ++|+|.++||+++
T Consensus 2 ~~~~~~~~i~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~-~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALK-KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELC-RREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHH-HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHH-HHcCCCcCCEEEE
Confidence 4567888775 2358999999999999999999999999999994 5999999999872 3788 9999999999999
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHHHHH
Q 022560 267 FPKHSSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 267 ~~~g~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
|++|+. +..+.| ...++|.+.+..
T Consensus 78 ~~~G~~-v~~~~G--~~~~~l~~~~~~ 101 (103)
T cd02985 78 YKDGEK-IHEEEG--IGPDELIGDVLY 101 (103)
T ss_pred EeCCeE-EEEEeC--CCHHHHHHHHHh
Confidence 998874 566666 677888877654
No 41
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.78 E-value=2.6e-18 Score=131.53 Aligned_cols=102 Identities=36% Similarity=0.743 Sum_probs=90.5
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCeEEEEEEcCC-CcHHHHHHhcCCCCCC
Q 022560 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG-DQKEYAKQKLQLGSFP 262 (295)
Q Consensus 185 v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~-~~~~l~~~~~~V~~~P 262 (295)
|.++++++|++++. +.+++++|+||++||++|+.+.|.+.++++.++. .++.++.+|++. + ..++ ++|+|.++|
T Consensus 2 ~~~l~~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~-~~~~i~~~P 77 (105)
T cd02998 2 VVELTDSNFDKVVG--DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-KDLA-KKYGVSGFP 77 (105)
T ss_pred eEEcchhcHHHHhc--CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-hhhH-HhCCCCCcC
Confidence 67889999999764 3566999999999999999999999999999974 379999999999 7 8999 999999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 263 TILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 263 ti~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
++++|.+|+.....+.| .++.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~g-~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEG-GRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCC-ccCHHHHHhhC
Confidence 99999988665777887 69999999885
No 42
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.78 E-value=2.5e-18 Score=131.61 Aligned_cols=101 Identities=21% Similarity=0.511 Sum_probs=89.1
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCeEEEEEEcCC--CcHHHHHHhcCCCC
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG--DQKEYAKQKLQLGS 260 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~--~~~~l~~~~~~V~~ 260 (295)
.|+++++.+|+++++ ++++++|+|||+||++|+.+.|.+.++++.+.+ ..+.++.+|++. + ..++ ++|+|++
T Consensus 1 ~~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~-~~~~i~~ 75 (104)
T cd02997 1 DVVHLTDEDFRKFLK---KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-DALK-EEYNVKG 75 (104)
T ss_pred CeEEechHhHHHHHh---hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-HHHH-HhCCCcc
Confidence 367889999999886 677999999999999999999999999999873 368999999998 6 8999 9999999
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 261 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 261 ~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
+||+++|++|+. +..+.| ..+.++|.+||
T Consensus 76 ~Pt~~~~~~g~~-~~~~~g-~~~~~~l~~~l 104 (104)
T cd02997 76 FPTFKYFENGKF-VEKYEG-ERTAEDIIEFM 104 (104)
T ss_pred ccEEEEEeCCCe-eEEeCC-CCCHHHHHhhC
Confidence 999999998874 667777 78999999885
No 43
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.5e-18 Score=133.73 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=77.6
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 281 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~ 281 (295)
.+++++|+|||+||+||+.+.|.+.+|+.+|.+ +.|++||+|+. .+++ ++++|+.+||++||++|++ ...+.|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~-~~~~-~~~~V~~~PTf~f~k~g~~-~~~~vG-- 92 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDEL-EEVA-KEFNVKAMPTFVFYKGGEE-VDEVVG-- 92 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccC-HhHH-HhcCceEeeEEEEEECCEE-EEEEec--
Confidence 469999999999999999999999999999998 99999999995 9999 9999999999999999986 666666
Q ss_pred CCHHHHHHHHHHh
Q 022560 282 RDVDSLMAFVDAL 294 (295)
Q Consensus 282 ~~~e~l~~fi~~l 294 (295)
.+.++|.+.|.+.
T Consensus 93 a~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 93 ANKAELEKKIAKH 105 (106)
T ss_pred CCHHHHHHHHHhc
Confidence 5677888888764
No 44
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.78 E-value=2.3e-18 Score=141.14 Aligned_cols=106 Identities=19% Similarity=0.393 Sum_probs=88.0
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCC-
Q 022560 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS- 260 (295)
Q Consensus 182 ~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~- 260 (295)
+..+.+++.++|++.+. .+.+++|||+|||+||++|+.+.|.|+++++.+.+.++.|++||++++ ++++ ++|+|.+
T Consensus 27 ~~~v~~l~~~~f~~~l~-~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la-~~~~V~~~ 103 (152)
T cd02962 27 PEHIKYFTPKTLEEELE-RDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVA-EKFRVSTS 103 (152)
T ss_pred CCccEEcCHHHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHH-HHcCceec
Confidence 35788899999999774 234679999999999999999999999999999764699999999999 9999 9999988
Q ss_pred -----CCeEEEEeCCCCCeeecCC----------CCCCHHHHHHHH
Q 022560 261 -----FPTILFFPKHSSKPIKYPS----------ERRDVDSLMAFV 291 (295)
Q Consensus 261 -----~Pti~~~~~g~~~~~~~~g----------g~~~~e~l~~fi 291 (295)
+||+++|++|+. +..+.| +..+.++++..+
T Consensus 104 ~~v~~~PT~ilf~~Gk~-v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 104 PLSKQLPTIILFQGGKE-VARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred CCcCCCCEEEEEECCEE-EEEEeccccCccccccccccHHHHHHhc
Confidence 999999999875 334443 356677776543
No 45
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.77 E-value=4e-18 Score=129.78 Aligned_cols=100 Identities=32% Similarity=0.735 Sum_probs=91.1
Q ss_pred cCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC-CeEEEEEEcCCCcHHHHHHhcCCCCCCeEEE
Q 022560 188 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 188 lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~-~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~ 266 (295)
|++++|++++. ++++++|+||++||++|+.+.+.++++++.+++. ++.++.+|++++ ..++ ++|+|.++|++++
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-~~~~i~~~P~~~~ 75 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-KDLA-SRFGVSGFPTIKF 75 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-HHHH-HhCCCCcCCEEEE
Confidence 56788998875 7899999999999999999999999999999864 599999999999 9999 9999999999999
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 267 FPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 267 ~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
|++|+. +..|.| ..+.++|..||++.
T Consensus 76 ~~~~~~-~~~~~g-~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKK-PVDYEG-GRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCc-ceeecC-CCCHHHHHHHHHhc
Confidence 999987 788888 79999999999875
No 46
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.2e-18 Score=162.92 Aligned_cols=107 Identities=25% Similarity=0.532 Sum_probs=99.7
Q ss_pred CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHhcCC
Q 022560 181 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQL 258 (295)
Q Consensus 181 ~~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~V 258 (295)
....|+.|+.++|++++. .+..++|.||||||++|+.+.|.++++|+.++. ..+.+++|||+.+ .++| .+|+|
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~---~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~-~~y~v 97 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETIN---GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLA-SKYEV 97 (493)
T ss_pred cccceEEEecccHHHHhc---cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhH-hhhcC
Confidence 456799999999999997 889999999999999999999999999999988 4899999999999 9999 99999
Q ss_pred CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 259 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 259 ~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++|||+.+|++|.. ...|.| .++.+.|+.|+.+.
T Consensus 98 ~gyPTlkiFrnG~~-~~~Y~G-~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 98 RGYPTLKIFRNGRS-AQDYNG-PREADGIVKWLKKQ 131 (493)
T ss_pred CCCCeEEEEecCCc-ceeccC-cccHHHHHHHHHhc
Confidence 99999999999985 689998 79999999999863
No 47
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.76 E-value=9.6e-18 Score=129.09 Aligned_cols=95 Identities=26% Similarity=0.621 Sum_probs=83.2
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEe
Q 022560 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 268 (295)
Q Consensus 191 ~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~ 268 (295)
++|+++. ++++++|.|||+||++|+.+.|.|+++++.+++ ..+.++.+|++.. ..++ ++|+|.++||+++|+
T Consensus 7 ~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 7 DSFKDVR----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIA-SEFGVRGYPTIKLLK 80 (104)
T ss_pred hhhhhhc----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHH-hhcCCccccEEEEEc
Confidence 6677643 578999999999999999999999999999864 2599999999998 8999 999999999999997
Q ss_pred CCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 269 KHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 269 ~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+|. ...+.| ..+.++|.+|++++
T Consensus 81 ~~~--~~~~~G-~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GDL--AYNYRG-PRTKDDIVEFANRV 103 (104)
T ss_pred CCC--ceeecC-CCCHHHHHHHHHhh
Confidence 664 567777 78999999999875
No 48
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.75 E-value=1e-17 Score=130.58 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=85.2
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEEC--CCCh---hHHHHHHHHHHHHHHhcCCCeEEEEEEcC-----CCcHHHHH
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYA--PWCQ---FCQAMEGSYVELADKLAGNGVKVGKFRAD-----GDQKEYAK 253 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya--~wC~---~C~~~~p~~~~la~~~~~~~v~~~~vd~~-----~~~~~l~~ 253 (295)
.++.|++.+|++++. +++.+||.||| |||+ +|+.+.|.+.+.+. .|.+++|||+ ++ .+||
T Consensus 2 g~v~L~~~nF~~~v~---~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~-~~L~- 71 (116)
T cd03007 2 GCVDLDTVTFYKVIP---KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLN-MELG- 71 (116)
T ss_pred CeeECChhhHHHHHh---cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhh-HHHH-
Confidence 378899999999987 88999999999 9999 77777777766543 3899999995 45 7899
Q ss_pred HhcCCC--CCCeEEEEeCCC-CCeeecCCCCCCHHHHHHHHHHh
Q 022560 254 QKLQLG--SFPTILFFPKHS-SKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 254 ~~~~V~--~~Pti~~~~~g~-~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++|+|+ ++||+++|.+|. ..+..|.|+.++.+.|++||.+.
T Consensus 72 ~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 72 ERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999 999999999984 34688998339999999999864
No 49
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.75 E-value=1.2e-17 Score=128.92 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=86.4
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCC--ChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCC
Q 022560 183 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPW--CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 260 (295)
Q Consensus 183 ~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~w--C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~ 260 (295)
....+++..+|++.+. .++.++|.||++| |++|+.+.|.|.+++++|.+ .+.|++||++++ ++++ .+|+|++
T Consensus 10 ~~~~~~~~~~~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~-~~la-~~f~V~s 83 (111)
T cd02965 10 HGWPRVDAATLDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADE-QALA-ARFGVLR 83 (111)
T ss_pred cCCcccccccHHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCC-HHHH-HHcCCCc
Confidence 3456789999998885 8899999999997 99999999999999999988 789999999999 8999 9999999
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHH
Q 022560 261 FPTILFFPKHSSKPIKYPSERRDVDSLM 288 (295)
Q Consensus 261 ~Pti~~~~~g~~~~~~~~gg~~~~e~l~ 288 (295)
+||+++|++|+. +..+.| ..+.+++.
T Consensus 84 IPTli~fkdGk~-v~~~~G-~~~~~e~~ 109 (111)
T cd02965 84 TPALLFFRDGRY-VGVLAG-IRDWDEYV 109 (111)
T ss_pred CCEEEEEECCEE-EEEEeC-ccCHHHHh
Confidence 999999999974 445555 77877765
No 50
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.75 E-value=1.3e-17 Score=130.46 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=84.8
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCC
Q 022560 183 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262 (295)
Q Consensus 183 ~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~P 262 (295)
+.+.++++++|.+.+...+.+++|+|+||++||++|+.+.|.++++++.+.+ +.|++||++++ .++ ++|+|.++|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~~--~l~-~~~~i~~~P 78 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEKA--FLV-NYLDIKVLP 78 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchhh--HHH-HhcCCCcCC
Confidence 4578889999998886322348999999999999999999999999999976 89999999986 888 999999999
Q ss_pred eEEEEeCCCCCeeecCC------CCCCHHHHHHHH
Q 022560 263 TILFFPKHSSKPIKYPS------ERRDVDSLMAFV 291 (295)
Q Consensus 263 ti~~~~~g~~~~~~~~g------g~~~~e~l~~fi 291 (295)
|+++|++|+. +..+.| ...+.+.|.+++
T Consensus 79 t~~~f~~G~~-v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 79 TLLVYKNGEL-IDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEEECCEE-EEEEecHHHhCCCCCCHHHHHHHh
Confidence 9999999974 333333 345667777665
No 51
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.74 E-value=2.6e-17 Score=124.16 Aligned_cols=99 Identities=31% Similarity=0.677 Sum_probs=87.5
Q ss_pred ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhc-CCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEE
Q 022560 187 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 187 ~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~ 265 (295)
+++.++|.+.+. ++++++|+||++||++|+.+.|.+.++++.++ ...+.|+.||++++ ..++ ++|+|.++||++
T Consensus 2 ~l~~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~-~~~~i~~~Pt~~ 76 (101)
T cd02961 2 ELTDDNFDELVK---DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-NDLC-SEYGVRGYPTIK 76 (101)
T ss_pred cccHHHHHHHHh---CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-HHHH-HhCCCCCCCEEE
Confidence 578889998886 66699999999999999999999999999994 23799999999998 8999 999999999999
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 266 FFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 266 ~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
+|++++.....+.| ..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~g-~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEG-PRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCC-CcCHHHHHhhC
Confidence 99988555788887 68999998875
No 52
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.74 E-value=3.6e-17 Score=127.96 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=85.4
Q ss_pred CCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCC
Q 022560 183 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 261 (295)
Q Consensus 183 ~~v~~lt~-~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~ 261 (295)
+.+..+++ ++|.+.+. ++++|+|+||++||++|+.+.|.++++++.+.+ +.|++||++++ .+++ ++|+|.++
T Consensus 4 g~v~~i~~~~~~~~~i~---~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~~-~~l~-~~~~v~~v 76 (113)
T cd02989 4 GKYREVSDEKEFFEIVK---SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEKA-PFLV-EKLNIKVL 76 (113)
T ss_pred CCeEEeCCHHHHHHHHh---CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcccC-HHHH-HHCCCccC
Confidence 45677777 88888876 678999999999999999999999999999876 99999999999 8999 99999999
Q ss_pred CeEEEEeCCCCCe-----eecCC-CCCCHHHHHHHH
Q 022560 262 PTILFFPKHSSKP-----IKYPS-ERRDVDSLMAFV 291 (295)
Q Consensus 262 Pti~~~~~g~~~~-----~~~~g-g~~~~e~l~~fi 291 (295)
||+++|++|+... ....+ +..+.+++..||
T Consensus 77 Pt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 77 PTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999999997411 11222 357788888776
No 53
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.73 E-value=4.3e-17 Score=131.42 Aligned_cols=102 Identities=10% Similarity=0.146 Sum_probs=83.7
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEE-EE
Q 022560 189 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL-FF 267 (295)
Q Consensus 189 t~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~-~~ 267 (295)
+..+|++.+. ...+++|||+|||+||+||+.+.|.|+++++.+++ .+.|++||+|++ ++++ +.|+|++.|+++ ||
T Consensus 10 s~~e~d~~I~-~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~-~dla-~~y~I~~~~t~~~ff 85 (142)
T PLN00410 10 SGWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEV-PDFN-TMYELYDPCTVMFFF 85 (142)
T ss_pred CHHHHHHHHH-hcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCC-HHHH-HHcCccCCCcEEEEE
Confidence 4578888774 23678999999999999999999999999999988 688899999999 9999 999999777666 88
Q ss_pred eCCCCCeeecCCC-------CCCHHHHHHHHHHh
Q 022560 268 PKHSSKPIKYPSE-------RRDVDSLMAFVDAL 294 (295)
Q Consensus 268 ~~g~~~~~~~~gg-------~~~~e~l~~fi~~l 294 (295)
++|+..+-...|. ..+.++|++.++.+
T Consensus 86 k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred ECCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 8887434444441 46788888887754
No 54
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.73 E-value=5.3e-17 Score=125.38 Aligned_cols=100 Identities=10% Similarity=0.208 Sum_probs=82.1
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCC
Q 022560 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 270 (295)
Q Consensus 191 ~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g 270 (295)
++|++.+.. ..+++|||.|+|+||++|+.+.|.|+++++++++ .+.|++||+++. ++++ +.|+|+..||+++|++|
T Consensus 3 ~~~d~~i~~-~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev-~dva-~~y~I~amPtfvffkng 78 (114)
T cd02986 3 KEVDQAIKS-TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKV-PVYT-QYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHh-cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEecccc-HHHH-HhcCceeCcEEEEEECC
Confidence 456666542 2689999999999999999999999999999976 499999999999 9999 99999999999999999
Q ss_pred CCCeeecCCC--------CCCHHHHHHHHHHh
Q 022560 271 SSKPIKYPSE--------RRDVDSLMAFVDAL 294 (295)
Q Consensus 271 ~~~~~~~~gg--------~~~~e~l~~fi~~l 294 (295)
+-..+.+..| ..+.++|++.|+.+
T Consensus 79 kh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 79 QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred cEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 8544444332 34567787777643
No 55
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.72 E-value=1e-16 Score=121.52 Aligned_cols=100 Identities=25% Similarity=0.432 Sum_probs=86.2
Q ss_pred cCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEE
Q 022560 188 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 267 (295)
Q Consensus 188 lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~ 267 (295)
++.++|.+.+. +.+++++|+||++||++|+.+.+.+.++++.+.+ ++.|+.||++++ ..++ ++|+|.++|++++|
T Consensus 1 i~~~~~~~~~~--~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~P~~~~~ 75 (101)
T TIGR01068 1 LTDANFDETIA--SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDEN-PDIA-AKYGIRSIPTLLLF 75 (101)
T ss_pred CCHHHHHHHHh--hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCC-HHHH-HHcCCCcCCEEEEE
Confidence 35677888764 3467999999999999999999999999998876 699999999998 8999 99999999999999
Q ss_pred eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 268 PKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 268 ~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++|+. ...+.| ..+.+.|.+||++.
T Consensus 76 ~~g~~-~~~~~g-~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 76 KNGKE-VDRSVG-ALPKAALKQLINKN 100 (101)
T ss_pred eCCcE-eeeecC-CCCHHHHHHHHHhh
Confidence 88874 445555 68899999999874
No 56
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.72 E-value=5.1e-17 Score=124.92 Aligned_cols=96 Identities=18% Similarity=0.330 Sum_probs=80.4
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEEcCCC---cHHHHHHhcCCCCCCeE
Q 022560 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTI 264 (295)
Q Consensus 191 ~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~---~~~l~~~~~~V~~~Pti 264 (295)
++|.++++ +++++||+||++||++|+.+.+.+ .++++.+.+ ++.++.||++++ ...++ ++|+|.++||+
T Consensus 2 ~~~~~~~~---~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~-~~~~i~~~Pti 76 (104)
T cd02953 2 AALAQALA---QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALL-KRFGVFGPPTY 76 (104)
T ss_pred HHHHHHHH---cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHH-HHcCCCCCCEE
Confidence 45666665 889999999999999999999988 678888886 799999999873 26888 99999999999
Q ss_pred EEEeC-CCCCeeecCCCCCCHHHHHHHHH
Q 022560 265 LFFPK-HSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 265 ~~~~~-g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
++|++ +++.+..+.| ..+.++|.++|+
T Consensus 77 ~~~~~~~g~~~~~~~G-~~~~~~l~~~l~ 104 (104)
T cd02953 77 LFYGPGGEPEPLRLPG-FLTADEFLEALE 104 (104)
T ss_pred EEECCCCCCCCccccc-ccCHHHHHHHhC
Confidence 99985 3344666776 799999998873
No 57
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.9e-17 Score=156.56 Aligned_cols=119 Identities=27% Similarity=0.551 Sum_probs=101.5
Q ss_pred CCCCCCcccccccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCeEEEEEEcCC
Q 022560 168 GAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG 246 (295)
Q Consensus 168 ~~~~~~~~~~~~~~~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~ 246 (295)
.+.--+.+.|+......|..+..+||++++. +++|.|+|.||||||+||+++.|.+++|++.|++ .+|.++++|.+.
T Consensus 351 ~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~--de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTa 428 (493)
T KOG0190|consen 351 KPHLKSQPIPEDNDRSPVKVVVGKNFDDIVL--DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATA 428 (493)
T ss_pred ccccccCCCCcccccCCeEEEeecCHHHHhh--ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccc
Confidence 3444555666655556799999999999885 7899999999999999999999999999999999 589999999999
Q ss_pred CcHHHHHHhcCCCCCCeEEEEeCCCC-CeeecCCCCCCHHHHHHHHHH
Q 022560 247 DQKEYAKQKLQLGSFPTILFFPKHSS-KPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 247 ~~~~l~~~~~~V~~~Pti~~~~~g~~-~~~~~~gg~~~~e~l~~fi~~ 293 (295)
|+ + ....+.++|||++|+.|.+ .++.|.| .++.++|..||.+
T Consensus 429 Nd--~--~~~~~~~fPTI~~~pag~k~~pv~y~g-~R~le~~~~fi~~ 471 (493)
T KOG0190|consen 429 ND--V--PSLKVDGFPTILFFPAGHKSNPVIYNG-DRTLEDLKKFIKK 471 (493)
T ss_pred cc--C--ccccccccceEEEecCCCCCCCcccCC-CcchHHHHhhhcc
Confidence 83 3 3457888999999998874 4888988 7999999999975
No 58
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.71 E-value=1.4e-16 Score=129.60 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=81.7
Q ss_pred cccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHhcCCCCCCeEEEEe
Q 022560 190 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFP 268 (295)
Q Consensus 190 ~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~V~~~Pti~~~~ 268 (295)
...|++.+. .++++||+|||+||++|+.+.|.|.++++.+.+ .+.|+.||++... ..++ ++|+|.++||+++|+
T Consensus 10 ~~~~~~a~~---~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~-~~~~V~~iPt~v~~~ 84 (142)
T cd02950 10 STPPEVALS---NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEI-DRYRVDGIPHFVFLD 84 (142)
T ss_pred cCCHHHHHh---CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHH-HHcCCCCCCEEEEEC
Confidence 356777664 789999999999999999999999999999987 6888888887642 5788 999999999999996
Q ss_pred CCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 269 KHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 269 ~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
.+++.+..+.| ....++|.++|+++
T Consensus 85 ~~G~~v~~~~G-~~~~~~l~~~l~~l 109 (142)
T cd02950 85 REGNEEGQSIG-LQPKQVLAQNLDAL 109 (142)
T ss_pred CCCCEEEEEeC-CCCHHHHHHHHHHH
Confidence 44443555666 78889999998875
No 59
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.71 E-value=1.9e-17 Score=137.55 Aligned_cols=89 Identities=47% Similarity=0.846 Sum_probs=77.2
Q ss_pred cChhhhcchhchHHHHHHHhc--CCEEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCCCCCHHHHHHHH
Q 022560 23 DGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFL 100 (295)
Q Consensus 23 ~~~~~c~~~~K~~pl~~~l~~--~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~y~ 100 (295)
.....||+.+|..|+.+++++ ..++++|+|++|+ ..|..+...... ..+++..+++||++|+.+|||+|+
T Consensus 83 ~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~-~~r~~~~~~~~~-------~~~~~~~~~~Pl~~w~~~di~~~~ 154 (173)
T cd01713 83 PDRRWCCRILKVEPLRRALKELGVVAWITGIRRDES-ARRALLPVVWTD-------DGKGGILKVNPLLDWTYEDVWAYL 154 (173)
T ss_pred ccHHHhhccccchHHHHHHHhcCCeEEEEEeccccc-hhhhhCcccccc-------CCCCCcEEEcchhcCCHHHHHHHH
Confidence 456789999999999999995 4589999999999 588887765211 133578999999999999999999
Q ss_pred HHCCCCCCccccCCccccC
Q 022560 101 RTMDVPINSLHSQGYISIG 119 (295)
Q Consensus 101 ~~~~~p~~~ly~~g~~sig 119 (295)
+.++||+||||++||+|+|
T Consensus 155 ~~~~l~~~~ly~~g~~~~g 173 (173)
T cd01713 155 ARHGLPYNPLYDQGYRSIG 173 (173)
T ss_pred HHcCCCCCHHHHcCCCCCC
Confidence 9999999999999999987
No 60
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.71 E-value=1.9e-16 Score=124.03 Aligned_cols=103 Identities=24% Similarity=0.533 Sum_probs=83.6
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCC-cHHHHHHhcCCCC
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGD-QKEYAKQKLQLGS 260 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~-~~~l~~~~~~V~~ 260 (295)
.+++++.++|++.+. +.+++|||+|||+||++|+.+.|.|+++++.+++ ..+.|+.+||+.. ..+++ ++|+|++
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~-~~~~i~~ 78 (114)
T cd02992 2 PVIVLDAASFNSALL--GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALC-RDFGVTG 78 (114)
T ss_pred CeEECCHHhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHH-HhCCCCC
Confidence 578899999999886 3457999999999999999999999999998865 2599999998642 27899 9999999
Q ss_pred CCeEEEEeCCCCC---eeecCCCCCCHHHHHH
Q 022560 261 FPTILFFPKHSSK---PIKYPSERRDVDSLMA 289 (295)
Q Consensus 261 ~Pti~~~~~g~~~---~~~~~gg~~~~e~l~~ 289 (295)
+||+++|++|... -..+.|..+..+++..
T Consensus 79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 79 YPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred CCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 9999999988632 2456664466666543
No 61
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.70 E-value=1.6e-16 Score=120.24 Aligned_cols=95 Identities=23% Similarity=0.386 Sum_probs=79.3
Q ss_pred cccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeC
Q 022560 190 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 269 (295)
Q Consensus 190 ~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~ 269 (295)
.++|++++... .+++|+|+||++||++|+.+.|.|+++++.+.. .+.|+++|+++. .+++ ++|+|.++||+++|++
T Consensus 2 ~~~~~~~~~~~-~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~-~~~~-~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 2 EEEFEELLKSD-ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEEL-PEIS-EKFEITAVPTFVFFRN 77 (97)
T ss_pred HHHHHHHHhhC-CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccC-HHHH-HhcCCccccEEEEEEC
Confidence 46777877622 269999999999999999999999999999744 799999999998 8999 9999999999999998
Q ss_pred CCCCeeecCCCCCCHHHHHHHH
Q 022560 270 HSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 270 g~~~~~~~~gg~~~~e~l~~fi 291 (295)
|+. ...+.| .+.++|.+.|
T Consensus 78 g~~-~~~~~g--~~~~~l~~~~ 96 (97)
T cd02984 78 GTI-VDRVSG--ADPKELAKKV 96 (97)
T ss_pred CEE-EEEEeC--CCHHHHHHhh
Confidence 863 444444 6778887765
No 62
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.69 E-value=1.8e-16 Score=133.39 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=88.9
Q ss_pred CCCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCC
Q 022560 182 SQNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 260 (295)
Q Consensus 182 ~~~v~~lt~-~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~ 260 (295)
...|.+++. ++|.+.+.....+.+|||+||++||++|+.+.|.|.+|++.|.. +.|++||+++. .++ .+|+|.+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d~~--~l~-~~f~v~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRASAT--GAS-DEFDTDA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEeccch--hhH-HhCCCCC
Confidence 356888988 99999886333446999999999999999999999999999976 99999999976 788 8999999
Q ss_pred CCeEEEEeCCCCC--ee---ecCCCCCCHHHHHHHHHHh
Q 022560 261 FPTILFFPKHSSK--PI---KYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 261 ~Pti~~~~~g~~~--~~---~~~gg~~~~e~l~~fi~~l 294 (295)
+||+++|++|+.. .+ ...|...+.++|..+|.+.
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999999999741 11 1223367889999988763
No 63
>PTZ00051 thioredoxin; Provisional
Probab=99.68 E-value=3.4e-16 Score=118.74 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=78.8
Q ss_pred ceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 185 LVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 185 v~~lt-~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
|.+++ .++|.+++. .+++++|+||++||++|+.+.|.+.++++.+.+ +.|+.||++++ ..++ ++|+|.++||
T Consensus 2 v~~i~~~~~~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~-~~~~-~~~~v~~~Pt 74 (98)
T PTZ00051 2 VHIVTSQAEFESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDEL-SEVA-EKENITSMPT 74 (98)
T ss_pred eEEecCHHHHHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcch-HHHH-HHCCCceeeE
Confidence 34454 467777765 789999999999999999999999999998765 99999999998 8999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHH
Q 022560 264 ILFFPKHSSKPIKYPSERRDVDSLM 288 (295)
Q Consensus 264 i~~~~~g~~~~~~~~gg~~~~e~l~ 288 (295)
+++|++|+. ...+.| ...++|.
T Consensus 75 ~~~~~~g~~-~~~~~G--~~~~~~~ 96 (98)
T PTZ00051 75 FKVFKNGSV-VDTLLG--ANDEALK 96 (98)
T ss_pred EEEEeCCeE-EEEEeC--CCHHHhh
Confidence 999998874 455555 4666664
No 64
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.67 E-value=5.9e-16 Score=148.46 Aligned_cols=105 Identities=27% Similarity=0.583 Sum_probs=94.4
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHhcCCCCC
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSF 261 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~V~~~ 261 (295)
.|+.++.++|+.++. ++++++|+|||+||++|+.+.|.+.++++.+.+ .++.|+.|||+++ .++| ++|+|.++
T Consensus 2 ~v~~l~~~~~~~~i~---~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~-~~~~i~~~ 76 (462)
T TIGR01130 2 DVLVLTKDNFDDFIK---SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLA-QKYGVSGY 76 (462)
T ss_pred CceECCHHHHHHHHh---cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHH-HhCCCccc
Confidence 578899999999886 788999999999999999999999999998876 3599999999999 9999 99999999
Q ss_pred CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 262 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 262 Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
||+++|++|+.....|.| .++.++|.+||.++
T Consensus 77 Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNG-PRDADGIVKYMKKQ 108 (462)
T ss_pred cEEEEEeCCccceeEecC-CCCHHHHHHHHHHh
Confidence 999999988743477887 79999999999864
No 65
>PTZ00102 disulphide isomerase; Provisional
Probab=99.67 E-value=7.5e-16 Score=148.79 Aligned_cols=108 Identities=26% Similarity=0.544 Sum_probs=96.4
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHHHHhcCCCC
Q 022560 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGS 260 (295)
Q Consensus 182 ~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~V~~ 260 (295)
...|..++.++|++++. +++++|+|+|||+||++|+.+.|.|+++++.+++ ..+.|+.+|++.+ ...+ +++++++
T Consensus 356 ~~~v~~l~~~~f~~~v~--~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-~~~~-~~~~v~~ 431 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVF--KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-ETPL-EEFSWSA 431 (477)
T ss_pred CCCeEEecccchHHHHh--cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-ccch-hcCCCcc
Confidence 45688999999999763 4789999999999999999999999999999876 4699999999998 7788 8999999
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 261 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 261 ~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+||+++|++|++.+..+.| .++.++|.+||++.
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G-~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEG-ERTVEGFKEFVNKH 464 (477)
T ss_pred cCeEEEEECCCcceeEecC-cCCHHHHHHHHHHc
Confidence 9999999998876678888 79999999999874
No 66
>PTZ00102 disulphide isomerase; Provisional
Probab=99.66 E-value=7.9e-16 Score=148.62 Aligned_cols=104 Identities=26% Similarity=0.574 Sum_probs=94.5
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHhcCCCC
Q 022560 183 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGS 260 (295)
Q Consensus 183 ~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~V~~ 260 (295)
..+..++.++|++++. +++.++|+|||+||++|+.+.|.+.++++.+.. .++.|+.|||+++ ..++ ++|+|.+
T Consensus 32 ~~v~~l~~~~f~~~i~---~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~-~~~~i~~ 106 (477)
T PTZ00102 32 EHVTVLTDSTFDKFIT---ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELA-QEFGVRG 106 (477)
T ss_pred CCcEEcchhhHHHHHh---cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHH-HhcCCCc
Confidence 5689999999999886 788999999999999999999999999988864 3699999999999 9999 9999999
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 261 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 261 ~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+||+++|++|+. +.|.| .++.+.|.+||+++
T Consensus 107 ~Pt~~~~~~g~~--~~y~g-~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 107 YPTIKFFNKGNP--VNYSG-GRTADGIVSWIKKL 137 (477)
T ss_pred ccEEEEEECCce--EEecC-CCCHHHHHHHHHHh
Confidence 999999999873 48888 79999999999875
No 67
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.66 E-value=7.6e-16 Score=116.99 Aligned_cols=87 Identities=20% Similarity=0.342 Sum_probs=77.9
Q ss_pred CCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCC
Q 022560 201 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE 280 (295)
Q Consensus 201 ~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg 280 (295)
+.+++|+|+||++||+.|+.+.|.++++++.+.+ ++.++.+|++++ ++++ .+++|.++|++++|++|+. +..+.|
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~-~~l~-~~~~v~~vPt~~i~~~g~~-v~~~~g- 85 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDED-QEIA-EAAGIMGTPTVQFFKDKEL-VKEISG- 85 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC-HHHH-HHCCCeeccEEEEEECCeE-EEEEeC-
Confidence 4788999999999999999999999999999987 799999999998 8999 9999999999999998763 556666
Q ss_pred CCCHHHHHHHHH
Q 022560 281 RRDVDSLMAFVD 292 (295)
Q Consensus 281 ~~~~e~l~~fi~ 292 (295)
..+.++|.++|+
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 788899998874
No 68
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.64 E-value=2.3e-15 Score=119.63 Aligned_cols=92 Identities=22% Similarity=0.481 Sum_probs=76.7
Q ss_pred cCCC-CcEEEEEECCCChhHHHHHHHHH---HHHHHhcCCCeEEEEEEcCCC------------cHHHHHHhcCCCCCCe
Q 022560 200 DHRQ-EPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGD------------QKEYAKQKLQLGSFPT 263 (295)
Q Consensus 200 ~~~~-k~vvV~Fya~wC~~C~~~~p~~~---~la~~~~~~~v~~~~vd~~~~------------~~~l~~~~~~V~~~Pt 263 (295)
.+++ ++++|+|||+||++|+.+.+.+. .+.+.+.+ ++.++.||++.+ ..+++ .+|+|.++||
T Consensus 10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~-~~~~v~~~Pt 87 (125)
T cd02951 10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELA-RKYRVRFTPT 87 (125)
T ss_pred HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHH-HHcCCccccE
Confidence 3478 99999999999999999999885 56666665 689999999863 26788 9999999999
Q ss_pred EEEEeCC-CCCeeecCCCCCCHHHHHHHHHHh
Q 022560 264 ILFFPKH-SSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 264 i~~~~~g-~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+++|+++ ++.+..+.| ..+.+.|.++|+.+
T Consensus 88 ~~~~~~~gg~~~~~~~G-~~~~~~~~~~l~~~ 118 (125)
T cd02951 88 VIFLDPEGGKEIARLPG-YLPPDEFLAYLEYV 118 (125)
T ss_pred EEEEcCCCCceeEEecC-CCCHHHHHHHHHHH
Confidence 9999986 555666766 68889999998865
No 69
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.64 E-value=2.4e-15 Score=117.62 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=77.1
Q ss_pred CCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCC-CeeecCC
Q 022560 201 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSS-KPIKYPS 279 (295)
Q Consensus 201 ~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~-~~~~~~g 279 (295)
..+..++|+||++||++|+.+.|.++++++.+ + .+.|..||++++ ++++ .+|+|.++||+++|++|+. ..+.+.|
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~~-~~l~-~~~~v~~vPt~~i~~~g~~~~~~~~~G 95 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDED-KEKA-EKYGVERVPTTIFLQDGGKDGGIRYYG 95 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCcC-HHHH-HHcCCCcCCEEEEEeCCeecceEEEEe
Confidence 36778999999999999999999999999887 4 599999999998 9999 9999999999999998653 2346766
Q ss_pred CCCCHHHHHHHHHHh
Q 022560 280 ERRDVDSLMAFVDAL 294 (295)
Q Consensus 280 g~~~~e~l~~fi~~l 294 (295)
.....+|.+||+.+
T Consensus 96 -~~~~~el~~~i~~i 109 (113)
T cd02975 96 -LPAGYEFASLIEDI 109 (113)
T ss_pred -cCchHHHHHHHHHH
Confidence 67888999999875
No 70
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.63 E-value=3.8e-15 Score=118.04 Aligned_cols=100 Identities=8% Similarity=0.148 Sum_probs=78.3
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc----------HHHHHH
Q 022560 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------KEYAKQ 254 (295)
Q Consensus 185 v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------~~l~~~ 254 (295)
+..++.++|.+.++ +++.++|+|+++|||+|+.+.|.|.++++.. ++.|..||++.+. .++. +
T Consensus 8 ~~~it~~~~~~~i~---~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~-~ 80 (122)
T TIGR01295 8 LEVTTVVRALEALD---KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR-S 80 (122)
T ss_pred ceecCHHHHHHHHH---cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-H
Confidence 45677778888775 7889999999999999999999999999983 4678888887531 2455 5
Q ss_pred hcC----CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 255 KLQ----LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 255 ~~~----V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
+|+ |.++||+++|++|+. +....|+..+.++|.+|+.
T Consensus 81 ~~~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 81 RFGIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HcCCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHhh
Confidence 655 556999999999985 4445564677999999874
No 71
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.62 E-value=2.3e-15 Score=128.35 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=85.6
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCC
Q 022560 183 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262 (295)
Q Consensus 183 ~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~P 262 (295)
+.|.+++..+|...+.....+.+|||+||++||++|+.+.|.|.+||..|.. +.|++||+++. . .+|+|.++|
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad~~----~-~~~~i~~lP 154 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIISTQC----I-PNYPDKNLP 154 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhHHh----H-hhCCCCCCC
Confidence 6788899999987665333456899999999999999999999999999976 99999999764 5 789999999
Q ss_pred eEEEEeCCCCCeeec------CCCCCCHHHHHHHHHHh
Q 022560 263 TILFFPKHSSKPIKY------PSERRDVDSLMAFVDAL 294 (295)
Q Consensus 263 ti~~~~~g~~~~~~~------~gg~~~~e~l~~fi~~l 294 (295)
|+++|++|+. +..+ .|...+.++|..+|.+.
T Consensus 155 Tlliyk~G~~-v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 155 TILVYRNGDI-VKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEEECCEE-EEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 9999999974 2222 23367889999888653
No 72
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2e-15 Score=129.50 Aligned_cols=102 Identities=19% Similarity=0.303 Sum_probs=85.2
Q ss_pred ceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 185 LVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 185 v~~l-t~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
|+.+ ++.+|..-+. ....+.|+|+|+|+||+||+.+.|.|..++.+|++ .+|++||+++. +..+ ..++|...||
T Consensus 3 Vi~v~~d~df~~~ls-~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~c-~~ta-a~~gV~amPT 77 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELS-AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDEC-RGTA-ATNGVNAMPT 77 (288)
T ss_pred eEEecCcHHHHHhhh-ccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHHh-hchh-hhcCcccCce
Confidence 4555 4467877664 34567999999999999999999999999999987 99999999999 8888 8999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 264 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 264 i~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+++|.+|.+ +..+.| .++..|.+.|.++
T Consensus 78 Fiff~ng~k-id~~qG--Ad~~gLe~kv~~~ 105 (288)
T KOG0908|consen 78 FIFFRNGVK-IDQIQG--ADASGLEEKVAKY 105 (288)
T ss_pred EEEEecCeE-eeeecC--CCHHHHHHHHHHH
Confidence 999999985 666666 6777777776653
No 73
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.60 E-value=1.3e-15 Score=133.79 Aligned_cols=88 Identities=31% Similarity=0.656 Sum_probs=81.6
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS 279 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~g 279 (295)
.+..|+|.||||||++|+++.|.|.++.-.+++ ..++++++|++.. +.++ .+|+|++|||+.+|+++. .+.|.|
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-~aiA-nefgiqGYPTIk~~kgd~--a~dYRG 117 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-PAIA-NEFGIQGYPTIKFFKGDH--AIDYRG 117 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-hhhH-hhhccCCCceEEEecCCe--eeecCC
Confidence 578999999999999999999999999988887 5799999999999 9999 999999999999999998 899999
Q ss_pred CCCCHHHHHHHHHHh
Q 022560 280 ERRDVDSLMAFVDAL 294 (295)
Q Consensus 280 g~~~~e~l~~fi~~l 294 (295)
.++.+.|++|....
T Consensus 118 -~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 118 -GREKDAIIEFAHRC 131 (468)
T ss_pred -CccHHHHHHHHHhc
Confidence 69999999997653
No 74
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.59 E-value=1.8e-14 Score=106.38 Aligned_cols=92 Identities=29% Similarity=0.503 Sum_probs=78.9
Q ss_pred cHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCC
Q 022560 192 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 192 ~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~ 271 (295)
+|+..+. .+++++|+||++||++|+.+.+.+.++++. .+ ++.|+.+|++++ ..++ ++|++.++|++++|.+|+
T Consensus 2 ~~~~~~~---~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~-~~~~-~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 2 EFEELIK---SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDEN-PELA-EEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred chHHHHh---cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCC-hhHH-HhcCcccccEEEEEECCE
Confidence 5666665 559999999999999999999999999888 33 699999999998 8999 999999999999999887
Q ss_pred CCeeecCCCCCCHHHHHHHHH
Q 022560 272 SKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 272 ~~~~~~~gg~~~~e~l~~fi~ 292 (295)
. ...+.| ..+.++|.++|+
T Consensus 75 ~-~~~~~g-~~~~~~l~~~i~ 93 (93)
T cd02947 75 E-VDRVVG-ADPKEELEEFLE 93 (93)
T ss_pred E-EEEEec-CCCHHHHHHHhC
Confidence 3 555666 678899998873
No 75
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.58 E-value=6.4e-15 Score=129.60 Aligned_cols=101 Identities=26% Similarity=0.523 Sum_probs=90.4
Q ss_pred cCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC----CCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 188 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG----NGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 188 lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~----~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
++.+|++.++. ++..|+|.|||+||+.++.++|.|++.|..++. .++.+++|||+++ ..++ ++|.|..|||
T Consensus 1 lt~~N~~~il~---s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia-~ky~I~KyPT 75 (375)
T KOG0912|consen 1 LTSENIDSILD---SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIA-DKYHINKYPT 75 (375)
T ss_pred CccccHHHhhc---cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHh-hhhccccCce
Confidence 45678888776 799999999999999999999999999888765 4799999999999 8999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 264 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 264 i~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+.+|.+|.-.-..|.| .++.+.|.+||++.
T Consensus 76 lKvfrnG~~~~rEYRg-~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 76 LKVFRNGEMMKREYRG-QRSVEALIEFIEKQ 105 (375)
T ss_pred eeeeeccchhhhhhcc-chhHHHHHHHHHHH
Confidence 9999999864557888 89999999999874
No 76
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.57 E-value=1.5e-14 Score=113.59 Aligned_cols=96 Identities=16% Similarity=0.277 Sum_probs=75.4
Q ss_pred cccHHHHHhhcCCCCcEEEEEEC-------CCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC------cHHHHHHhc
Q 022560 190 RTGMENLARLDHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQKL 256 (295)
Q Consensus 190 ~~~f~~~i~~~~~~k~vvV~Fya-------~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------~~~l~~~~~ 256 (295)
.++|.+.+.. .++++|+|+||| +||++|+.+.|.+++++..+++ ++.|++||+++. +.++. .++
T Consensus 9 ~~~f~~~i~~-~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~-~~~ 85 (119)
T cd02952 9 YEEFLKLLKS-HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFR-TDP 85 (119)
T ss_pred HHHHHHHHHh-cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhH-hcc
Confidence 3566666641 237899999999 9999999999999999999986 699999999863 15888 899
Q ss_pred CCC-CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 257 QLG-SFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 257 ~V~-~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
+|. ++||+++|++|++ ++...- .+.+.+..|+
T Consensus 86 ~I~~~iPT~~~~~~~~~-l~~~~c--~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQR-LVEDEC--LQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCce-ecchhh--cCHHHHHHhh
Confidence 998 9999999987753 443332 5666666654
No 77
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.56 E-value=4e-14 Score=108.20 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=79.2
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCC--CCCeEEEEeCCCCCeeecCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--SFPTILFFPKHSSKPIKYPS 279 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~--~~Pti~~~~~g~~~~~~~~g 279 (295)
.+++++|.|+++||++|+.+.|.+.++|+++++ .+.|+.||++++ ..++ +.|+|. ++|+++++++++...+.+.+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~-~~~~-~~~~i~~~~~P~~~~~~~~~~~k~~~~~ 87 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDF-GRHL-EYFGLKEEDLPVIAIINLSDGKKYLMPE 87 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhh-HHHH-HHcCCChhhCCEEEEEecccccccCCCc
Confidence 478999999999999999999999999999998 799999999998 8999 999999 99999999983222455655
Q ss_pred CCCCHHHHHHHHHHh
Q 022560 280 ERRDVDSLMAFVDAL 294 (295)
Q Consensus 280 g~~~~e~l~~fi~~l 294 (295)
+..+.++|.+||+++
T Consensus 88 ~~~~~~~l~~fi~~~ 102 (103)
T cd02982 88 EELTAESLEEFVEDF 102 (103)
T ss_pred cccCHHHHHHHHHhh
Confidence 456999999999875
No 78
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.54 E-value=5.1e-14 Score=135.03 Aligned_cols=106 Identities=25% Similarity=0.562 Sum_probs=92.8
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-C-CeEEEEEEcCCCcHHHHHHhcCCC
Q 022560 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-N-GVKVGKFRADGDQKEYAKQKLQLG 259 (295)
Q Consensus 182 ~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~-~-~v~~~~vd~~~~~~~l~~~~~~V~ 259 (295)
...|..++.++|++++. +.++.|||+|||+||++|+.+.|.++++++.+++ . .+.|+.+|++.+ ++. . ++|.
T Consensus 345 ~~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~-~-~~i~ 418 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVL--DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVP-P-FEVE 418 (462)
T ss_pred CCccEEeeCcCHHHHhc--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccC-C-CCcc
Confidence 35688899999999874 4689999999999999999999999999999987 3 799999999987 455 4 9999
Q ss_pred CCCeEEEEeCCCC-CeeecCCCCCCHHHHHHHHHHh
Q 022560 260 SFPTILFFPKHSS-KPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 260 ~~Pti~~~~~g~~-~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++||+++|++|++ .+..+.| ..+.++|.+||++.
T Consensus 419 ~~Pt~~~~~~~~~~~~~~~~g-~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 419 GFPTIKFVPAGKKSEPVPYDG-DRTLEDFSKFIAKH 453 (462)
T ss_pred ccCEEEEEeCCCCcCceEecC-cCCHHHHHHHHHhc
Confidence 9999999999876 4678888 79999999999864
No 79
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.48 E-value=4.8e-13 Score=97.88 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=70.2
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHH
Q 022560 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD 285 (295)
Q Consensus 206 vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e 285 (295)
.|..||++||++|+.+.|.++++++.++. .+.+..||++++ ++++ ++|++.++||+++ +|+ ..+.| ..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~vPt~~~--~g~---~~~~G-~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN-PQKA-MEYGIMAVPAIVI--NGD---VEFIG-APTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC-HHHH-HHcCCccCCEEEE--CCE---EEEec-CCCHH
Confidence 47789999999999999999999999976 699999999998 8999 9999999999986 554 35666 67999
Q ss_pred HHHHHHHHh
Q 022560 286 SLMAFVDAL 294 (295)
Q Consensus 286 ~l~~fi~~l 294 (295)
+|.++|+++
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999999864
No 80
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.46 E-value=1.8e-13 Score=107.63 Aligned_cols=99 Identities=13% Similarity=0.285 Sum_probs=67.1
Q ss_pred cHHHHHhh-cCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCC--CCeEEEEe
Q 022560 192 GMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS--FPTILFFP 268 (295)
Q Consensus 192 ~f~~~i~~-~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~--~Pti~~~~ 268 (295)
++++.++. ..++++|||+|||+||++|+.+.|.+.+....... ...|+.||++.+...+. ..|++.+ +||+++|+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~-~~~~~~g~~vPt~~f~~ 84 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKD-EEFSPDGGYIPRILFLD 84 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchh-hhcccCCCccceEEEEC
Confidence 34444433 34789999999999999999999999998776544 34566666665522455 6888876 99999997
Q ss_pred -CCCCC--eeecCCCCCCHHHHHHHHHH
Q 022560 269 -KHSSK--PIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 269 -~g~~~--~~~~~gg~~~~e~l~~fi~~ 293 (295)
+|+.. .+...| ..+.+.+.++|+.
T Consensus 85 ~~Gk~~~~~~~~~~-~~~~~~f~~~~~~ 111 (117)
T cd02959 85 PSGDVHPEIINKKG-NPNYKYFYSSAAQ 111 (117)
T ss_pred CCCCCchhhccCCC-CccccccCCCHHH
Confidence 55531 223444 4555555555543
No 81
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=99.46 E-value=5e-14 Score=133.38 Aligned_cols=101 Identities=18% Similarity=0.361 Sum_probs=75.2
Q ss_pred ChhhhcchhchHHHHHHHhcC------CEEEEeeeccCCCcccCCCC-ceecC---CccccccCCCCCEEEEeeCCCCCH
Q 022560 24 GHQECCRVRKVRPLRRALKGL------RAWITGQRKDQSPGTRSEIP-VVQVD---PVFEGLEGGVGSLVKWNPVANVKG 93 (295)
Q Consensus 24 ~~~~c~~~~K~~pl~~~l~~~------~~~~~G~R~~es~~~R~~~~-~~~~~---~~~~~~~~~~~~~~~~~Pi~~W~~ 93 (295)
...-||..+|+.|+.++|+++ .++++|+|++|| .+|++.. ..+-. ..+.. ...-++.+.++||++|+.
T Consensus 113 ~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES-~~RA~~m~k~e~~~~r~~l~~-~~~~~~~~v~~PI~dWs~ 190 (447)
T TIGR03183 113 KFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAES-QARAAVMEKHESGSLRDRLSR-NSSLPNSWVYSPIEDWSN 190 (447)
T ss_pred CCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhH-HHHHhhhhhhccccccccccc-cCCCCCcEEEEChHhCCH
Confidence 345699999999999998864 389999999999 5999861 11100 00100 012246899999999999
Q ss_pred HHHHHHHHHCCCCCC-------ccccC------------------CccccCCCCCCCC
Q 022560 94 NDIWNFLRTMDVPIN-------SLHSQ------------------GYISIGCEPCTRP 126 (295)
Q Consensus 94 ~dvw~y~~~~~~p~~-------~ly~~------------------g~~sigc~~ct~~ 126 (295)
.|||.||..+++|+. .||.. |..|.||+.||..
T Consensus 191 ~DVW~yL~~~~~P~g~~~~~l~~lY~~a~~~~eCp~v~d~~~~sCG~sRfGCw~Ct~v 248 (447)
T TIGR03183 191 DDVWMYLLQVPNPWGIDNKDLFGMYQGATADGECPLVVDTSTPSCGDSRFGCWVCTMV 248 (447)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHhhcccCCCCceeeCCCCCCCCCCCCCeeeCcCc
Confidence 999999999988764 46665 6678999999974
No 82
>PRK06850 hypothetical protein; Provisional
Probab=99.42 E-value=1.7e-13 Score=131.16 Aligned_cols=100 Identities=20% Similarity=0.395 Sum_probs=74.4
Q ss_pred hhhhcchhchHHHHHHHhcC----C--EEEEeeeccCCCcccCCC-CceecCC-ccccccCCCCCEEEEeeCCCCCHHHH
Q 022560 25 HQECCRVRKVRPLRRALKGL----R--AWITGQRKDQSPGTRSEI-PVVQVDP-VFEGLEGGVGSLVKWNPVANVKGNDI 96 (295)
Q Consensus 25 ~~~c~~~~K~~pl~~~l~~~----~--~~~~G~R~~es~~~R~~~-~~~~~~~-~~~~~~~~~~~~~~~~Pi~~W~~~dv 96 (295)
..-||..+|+.|+.+++++. + ++++|+|++|| .+|++. +..+.+. ... ....-++.+.++||++|+..||
T Consensus 135 ~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES-~~RA~~m~~~~~~~~rl~-~~~~~~~~~v~~PI~dWs~dDV 212 (507)
T PRK06850 135 FRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAES-AARAQVMAKHEIEGSRLS-RHTTLPNAFVYTPIEDWSNDDV 212 (507)
T ss_pred CccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeecccc-HHHHhhhhhhcccCccee-eccCCCCcEEEeChHhCCHHHH
Confidence 34599999999999998753 2 89999999999 599886 3323221 000 0011256889999999999999
Q ss_pred HHHHHHCCCCC-------CccccC------------------CccccCCCCCCCC
Q 022560 97 WNFLRTMDVPI-------NSLHSQ------------------GYISIGCEPCTRP 126 (295)
Q Consensus 97 w~y~~~~~~p~-------~~ly~~------------------g~~sigc~~ct~~ 126 (295)
|.||..+++|+ ..||.. |-.|-||+.||..
T Consensus 213 W~YL~~~~~P~g~~~~~L~~lY~~a~~~~eCp~v~d~~~~sCG~sRfGCwvCt~v 267 (507)
T PRK06850 213 WKYLLQWENPWGGSNRDLFTLYRGASADGECPLVVDTSTPSCGNSRFGCWVCTVV 267 (507)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHhhccCCCCCCeeeCCCCCCCCCCCCCccccccc
Confidence 99999988877 567775 3357899999874
No 83
>PTZ00062 glutaredoxin; Provisional
Probab=99.41 E-value=1.2e-12 Score=112.23 Aligned_cols=89 Identities=6% Similarity=0.087 Sum_probs=73.8
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEe
Q 022560 189 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 268 (295)
Q Consensus 189 t~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~ 268 (295)
+.++|.+++. ...+.++++|+|+||++|+.+.|.+.+|+++|.+ +.|+.||.+ |+|.++||+++|+
T Consensus 5 ~~ee~~~~i~--~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d----------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 5 KKEEKDKLIE--SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA----------DANNEYGVFEFYQ 70 (204)
T ss_pred CHHHHHHHHh--cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc----------cCcccceEEEEEE
Confidence 4567777764 1237899999999999999999999999999976 999999965 7899999999999
Q ss_pred CCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 269 KHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 269 ~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+|+. +-++.| .++.+|..+|.++
T Consensus 71 ~g~~-i~r~~G--~~~~~~~~~~~~~ 93 (204)
T PTZ00062 71 NSQL-INSLEG--CNTSTLVSFIRGW 93 (204)
T ss_pred CCEE-EeeeeC--CCHHHHHHHHHHH
Confidence 9984 445555 6788888888764
No 84
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.41 E-value=1.2e-12 Score=113.89 Aligned_cols=89 Identities=21% Similarity=0.332 Sum_probs=73.3
Q ss_pred CCcEEEEEEC---CCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCC
Q 022560 203 QEPWLVVLYA---PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS 279 (295)
Q Consensus 203 ~k~vvV~Fya---~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~g 279 (295)
+...++.|++ +||++|+.+.|.++++++.+.+-.+.++.+|.+++ ++++ ++|+|.++||+++|++|+.....+.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-~~l~-~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-KEEA-EKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-HHHH-HHcCCCccCEEEEEeCCeeeEEEEee
Confidence 4555667888 99999999999999999998542356777777788 9999 99999999999999998853346777
Q ss_pred CCCCHHHHHHHHHHh
Q 022560 280 ERRDVDSLMAFVDAL 294 (295)
Q Consensus 280 g~~~~e~l~~fi~~l 294 (295)
..+.++|.+||+.+
T Consensus 97 -~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 97 -IPAGYEFAALIEDI 110 (215)
T ss_pred -cCCHHHHHHHHHHH
Confidence 67888999998764
No 85
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.40 E-value=1.9e-12 Score=127.62 Aligned_cols=103 Identities=18% Similarity=0.338 Sum_probs=82.3
Q ss_pred CcccHHHHHhh-cCCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEEcCCC---cHHHHHHhcCCCCC
Q 022560 189 NRTGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSF 261 (295)
Q Consensus 189 t~~~f~~~i~~-~~~~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~---~~~l~~~~~~V~~~ 261 (295)
+.+++++.++. ..++|+|+|+|||+||++|+.+.+.+ .++.+.+++ +.++++|++++ +.++. ++|+|.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~--~~~v~vDvt~~~~~~~~l~-~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD--TVLLQADVTANNAEDVALL-KHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC--CEEEEEECCCCChhhHHHH-HHcCCCCC
Confidence 45777776653 34579999999999999999999875 677777765 89999999864 25788 89999999
Q ss_pred CeEEEEe-CCCCC-eeecCCCCCCHHHHHHHHHHhC
Q 022560 262 PTILFFP-KHSSK-PIKYPSERRDVDSLMAFVDALR 295 (295)
Q Consensus 262 Pti~~~~-~g~~~-~~~~~gg~~~~e~l~~fi~~l~ 295 (295)
||+++|+ +|+.. ..++.| ..+.+++.++|++++
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G-~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTG-FMDAAAFAAHLRQLQ 570 (571)
T ss_pred CEEEEECCCCCCcccccccC-CCCHHHHHHHHHHhc
Confidence 9999997 45432 245666 789999999999864
No 86
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.6e-12 Score=122.49 Aligned_cols=102 Identities=33% Similarity=0.684 Sum_probs=88.3
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeE
Q 022560 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264 (295)
Q Consensus 185 v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti 264 (295)
+..++..+|.... ...++.++|.||+|||++|+.+.|.+.++++.+++ .+.++.|||+.+ .++| ++|+|.++||+
T Consensus 31 ~~~~~~~~~~~~~--~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~-~~~~-~~y~i~gfPtl 105 (383)
T KOG0191|consen 31 VSELTLDSFFDFL--LKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEH-KDLC-EKYGIQGFPTL 105 (383)
T ss_pred hhhhhccccHHHh--hccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhh-HHHH-HhcCCccCcEE
Confidence 3344444444433 24788999999999999999999999999999999 899999999999 9999 99999999999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 022560 265 LFFPKHSSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 265 ~~~~~g~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
.+|.+| ..++.+.| ..+.+.+.+|+..
T Consensus 106 ~~f~~~-~~~~~~~~-~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 106 KVFRPG-KKPIDYSG-PRNAESLAEFLIK 132 (383)
T ss_pred EEEcCC-CceeeccC-cccHHHHHHHHHH
Confidence 999999 45899988 7999999999865
No 87
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.38 E-value=7.3e-12 Score=104.63 Aligned_cols=92 Identities=15% Similarity=0.339 Sum_probs=78.0
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------cHHHHHHhcCCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------QKEYAKQKLQLGS 260 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------~~~l~~~~~~V~~ 260 (295)
.+++++|+||++||++|+...+.+.++.+++.+.++.++.|+++.. +..+. +.|+|..
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~~ 138 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVI-DAYGVGP 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHH-HHcCCCC
Confidence 5789999999999999999999999999999875688999987643 14677 8999999
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 022560 261 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 295 (295)
Q Consensus 261 ~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l~ 295 (295)
+|++++++++++....+.| ..+.+++.+++++++
T Consensus 139 ~P~~~lid~~g~i~~~~~g-~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITG-EMTEEQLEEYLEKIK 172 (173)
T ss_pred cCeEEEECCCCcEEEEEeC-CCCHHHHHHHHHHhc
Confidence 9999999876665556666 789999999998874
No 88
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.38 E-value=2.9e-12 Score=101.57 Aligned_cols=100 Identities=15% Similarity=0.243 Sum_probs=70.9
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEEcCCCcHHHHHH--------hcC
Q 022560 189 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQ--------KLQ 257 (295)
Q Consensus 189 t~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~--------~~~ 257 (295)
+++.+.+..+ ++|+|+|+|+|+||++|+.|.+.. .++++.+.. ++.+++||.++. +++. + .|+
T Consensus 4 ~~eal~~Ak~---~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~-~~~~-~~~~~~~~~~~~ 77 (124)
T cd02955 4 GEEAFEKARR---EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREER-PDVD-KIYMNAAQAMTG 77 (124)
T ss_pred CHHHHHHHHH---cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcC-cHHH-HHHHHHHHHhcC
Confidence 3455655554 899999999999999999998743 357777655 699999999987 6665 3 368
Q ss_pred CCCCCeEEEEeCCCCCeeecCC----CCCCHHHHHHHHHHh
Q 022560 258 LGSFPTILFFPKHSSKPIKYPS----ERRDVDSLMAFVDAL 294 (295)
Q Consensus 258 V~~~Pti~~~~~g~~~~~~~~g----g~~~~e~l~~fi~~l 294 (295)
+.++|++++++..++.+....+ ...+...+.++++++
T Consensus 78 ~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 78 QGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 9999999999876653322211 013445666666654
No 89
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.35 E-value=6.2e-12 Score=121.34 Aligned_cols=89 Identities=17% Similarity=0.325 Sum_probs=73.2
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEc----------------------------CCCcHHHHH
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA----------------------------DGDQKEYAK 253 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~----------------------------~~~~~~l~~ 253 (295)
++++|||+|||+||++|+.+.|.+++++++++..++.|+.|.. |.+ ..+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~-~~la- 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG-GTLA- 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc-HHHH-
Confidence 7899999999999999999999999999998754577766543 333 5788
Q ss_pred HhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 022560 254 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 254 ~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
+.|+|.++||+++++++++++..+.| ..+.++|.++|+.
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G-~~~~eeL~a~Ie~ 171 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKG-SISEAQALALIRN 171 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeC-CCCHHHHHHHHHH
Confidence 89999999999888655554566666 7999999999984
No 90
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.7e-12 Score=117.91 Aligned_cols=106 Identities=31% Similarity=0.656 Sum_probs=93.0
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHHHHhcCCCCCC
Q 022560 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFP 262 (295)
Q Consensus 184 ~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~V~~~P 262 (295)
.|..++..+|...+. ..+..++|.||+|||++|+.+.|.+.+++..++. ..+.++.+|++.. ..++ .+++|.++|
T Consensus 145 ~v~~l~~~~~~~~~~--~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~-~~~~-~~~~v~~~P 220 (383)
T KOG0191|consen 145 EVFELTKDNFDETVK--DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH-KSLA-SRLEVRGYP 220 (383)
T ss_pred ceEEccccchhhhhh--ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH-HHHh-hhhcccCCc
Confidence 488999999998764 4678999999999999999999999999999874 5899999999977 8999 999999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 263 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 263 ti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
|+.+|.+|.+ ...+..+.++.+.|+.|+.+.
T Consensus 221 t~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 221 TLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred eEEEecCCCc-ccccccccccHHHHHHHHHhh
Confidence 9999999885 355555589999999999864
No 91
>PHA02125 thioredoxin-like protein
Probab=99.31 E-value=1.3e-11 Score=89.20 Aligned_cols=72 Identities=19% Similarity=0.374 Sum_probs=56.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 286 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~ 286 (295)
+++|||+||++|+.+.|.|+++. +.++.||.+++ .+++ ++|+|.++||++ +|+. ...+.|...+..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~-~~l~-~~~~v~~~PT~~---~g~~-~~~~~G~~~~~~~ 68 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEG-VELT-AKHHIRSLPTLV---NTST-LDRFTGVPRNVAE 68 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCC-HHHH-HHcCCceeCeEE---CCEE-EEEEeCCCCcHHH
Confidence 78999999999999999997652 56889999998 8999 999999999998 4432 3455564455566
Q ss_pred HHHHH
Q 022560 287 LMAFV 291 (295)
Q Consensus 287 l~~fi 291 (295)
|.+-|
T Consensus 69 l~~~~ 73 (75)
T PHA02125 69 LKEKL 73 (75)
T ss_pred HHHHh
Confidence 66543
No 92
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.31 E-value=1.4e-11 Score=107.12 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=75.8
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEE
Q 022560 186 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 186 ~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~ 265 (295)
..|+.+..+.+.. ..+..+|+.||++||++|+.+.+.+++++.... .+.+..+|.+++ ++++ .+|+|.++||++
T Consensus 118 ~~L~~~~~~~l~~--~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~-~~~~-~~~~V~~vPtl~ 191 (215)
T TIGR02187 118 PGLSEKTVELLQS--LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANEN-PDLA-EKYGVMSVPKIV 191 (215)
T ss_pred CCCCHHHHHHHHh--cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCC-HHHH-HHhCCccCCEEE
Confidence 3455444444432 123345555999999999999999999988854 499999999999 9999 999999999999
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 022560 266 FFPKHSSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 266 ~~~~g~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
++++|. . +.| ....++|.++|..
T Consensus 192 i~~~~~--~--~~G-~~~~~~l~~~l~~ 214 (215)
T TIGR02187 192 INKGVE--E--FVG-AYPEEQFLEYILS 214 (215)
T ss_pred EecCCE--E--EEC-CCCHHHHHHHHHh
Confidence 997664 2 666 6888999999875
No 93
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.31 E-value=2.2e-11 Score=100.14 Aligned_cols=89 Identities=17% Similarity=0.305 Sum_probs=66.4
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC-----------cHHHHHHhc---CCCCCCeEEEE
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-----------QKEYAKQKL---QLGSFPTILFF 267 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-----------~~~l~~~~~---~V~~~Pti~~~ 267 (295)
.++..+|+|||+||++|+.+.|.+++++++++ +.++.|+.+.. ........| ++.++||++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 35667999999999999999999999999883 55666665542 123331345 78999999999
Q ss_pred eCCCCCee-ecCCCCCCHHHHHHHHHHh
Q 022560 268 PKHSSKPI-KYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 268 ~~g~~~~~-~~~gg~~~~e~l~~fi~~l 294 (295)
+..+..+. .+.| ..+.++|.+.|+++
T Consensus 126 D~~G~~i~~~~~G-~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQG-AVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeec-ccCHHHHHHHHHHh
Confidence 87544233 4556 78999999988875
No 94
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.30 E-value=1.4e-11 Score=89.41 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=58.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 286 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~ 286 (295)
.|.||++||++|+.+.|.++++++++.. .+.|+.|| + .+.+ .+|++.++||+++ +|+ .+ +.|...+.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~--~--~~~a-~~~~v~~vPti~i--~G~--~~-~~G~~~~~~~ 70 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT--D--MNEI-LEAGVTATPGVAV--DGE--LV-IMGKIPSKEE 70 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC--C--HHHH-HHcCCCcCCEEEE--CCE--EE-EEeccCCHHH
Confidence 4789999999999999999999999976 68888777 2 3446 7899999999999 666 33 5552245578
Q ss_pred HHHHH
Q 022560 287 LMAFV 291 (295)
Q Consensus 287 l~~fi 291 (295)
|.++|
T Consensus 71 l~~~l 75 (76)
T TIGR00412 71 IKEIL 75 (76)
T ss_pred HHHHh
Confidence 87776
No 95
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.30 E-value=5e-12 Score=98.06 Aligned_cols=88 Identities=26% Similarity=0.493 Sum_probs=63.6
Q ss_pred CCCCcEEEEEECCCChhHHHHHHHHHHHHH---HhcCCCeEEEEEEcCCCc-------------------HHHHHHhcCC
Q 022560 201 HRQEPWLVVLYAPWCQFCQAMEGSYVELAD---KLAGNGVKVGKFRADGDQ-------------------KEYAKQKLQL 258 (295)
Q Consensus 201 ~~~k~vvV~Fya~wC~~C~~~~p~~~~la~---~~~~~~v~~~~vd~~~~~-------------------~~l~~~~~~V 258 (295)
.+++++||+|+++||++|+.+.+.+.+... .+.+ ++.++.++++... .++. +.|+|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELA-QRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHH-HHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHH-HHcCC
Confidence 468999999999999999999999986443 3433 5888888887541 3577 89999
Q ss_pred CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 259 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 259 ~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
.++||++++++.++.+..+.| ..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G-~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPG-YLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEES-S--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecC-CCCHHHHHhhC
Confidence 999999999744443555666 78999998875
No 96
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.29 E-value=2.1e-11 Score=109.44 Aligned_cols=88 Identities=15% Similarity=0.254 Sum_probs=69.7
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHhcCCCCCCeEEEEeC-C
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPK-H 270 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------~~~l~~~~~~V~~~Pti~~~~~-g 270 (295)
.++++||+||++||++|+.+.|.++++++.+. +.++.|++|.. +..++ ++|+|.++||++++++ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVFLADPDP 240 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEEEEECCC
Confidence 47899999999999999999999999999984 56666666542 14678 8999999999999997 5
Q ss_pred CCCeeecCCCCCCHHHHHHHHHHh
Q 022560 271 SSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 271 ~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+. +.....|..+.++|.+.|..+
T Consensus 241 ~~-v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 241 NQ-FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred CE-EEEEEeCCCCHHHHHHHHHHH
Confidence 53 333332378999999888653
No 97
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=3.5e-12 Score=121.08 Aligned_cols=109 Identities=16% Similarity=0.342 Sum_probs=86.1
Q ss_pred cCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCC-cHHHHHHhc
Q 022560 180 FNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGD-QKEYAKQKL 256 (295)
Q Consensus 180 ~~~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~-~~~l~~~~~ 256 (295)
..+++|++|+.++|+.++. .+.+-.+|.||++|||+|+.++|.|.++|+.... .-+.++.|||.+. +..+| ++|
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~--~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC-Ref 112 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVF--GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC-REF 112 (606)
T ss_pred CCCCCeEEeehhhhHHHhc--ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH-hhc
Confidence 3558899999999999885 4556899999999999999999999999999887 4688999999653 37899 999
Q ss_pred CCCCCCeEEEEeCCCCC---eeecCCCCCCHHHHHHHHH
Q 022560 257 QLGSFPTILFFPKHSSK---PIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 257 ~V~~~Pti~~~~~g~~~---~~~~~gg~~~~e~l~~fi~ 292 (295)
+|.++|++.+|..+-.. -..+.| .....++.+++.
T Consensus 113 ~V~~~Ptlryf~~~~~~~~~G~~~~~-~~~~~ei~~~l~ 150 (606)
T KOG1731|consen 113 SVSGYPTLRYFPPDSQNKTDGSDVSG-PVIPSEIRDQLI 150 (606)
T ss_pred CCCCCceeeecCCccccCcCCCcccC-CcchhhHHHHHH
Confidence 99999999999876321 122223 344556655554
No 98
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.27 E-value=3.1e-11 Score=98.27 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=60.7
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-------CCeEEEEEEcCCCc------------------------HH
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-------NGVKVGKFRADGDQ------------------------KE 250 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~-------~~v~~~~vd~~~~~------------------------~~ 250 (295)
++++|+|+|||+||++|+.+.|.+.++++.+++ +++.++.|+.+.+. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 589999999999999999999999998887654 25899999877531 14
Q ss_pred HHHHhcCCCCCCeEEEEeCCCCCeeecCC
Q 022560 251 YAKQKLQLGSFPTILFFPKHSSKPIKYPS 279 (295)
Q Consensus 251 l~~~~~~V~~~Pti~~~~~g~~~~~~~~g 279 (295)
+. .+|+|.++||+++++..++ ++...|
T Consensus 104 l~-~~y~v~~iPt~vlId~~G~-Vv~~~~ 130 (146)
T cd03008 104 LE-AQFSVEELPTVVVLKPDGD-VLAANA 130 (146)
T ss_pred HH-HHcCCCCCCEEEEECCCCc-EEeeCh
Confidence 56 7899999999999986553 554443
No 99
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.25 E-value=6.2e-11 Score=100.66 Aligned_cols=87 Identities=16% Similarity=0.301 Sum_probs=68.5
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc----------------------HHHHHHhcCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------------------KEYAKQKLQLG 259 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~~V~ 259 (295)
++++++|+|||+||++|+.+.|.+.++.+. ++.++.|+.+++. ..+. ..|+|.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLG-LDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHH-HhcCCC
Confidence 689999999999999999999999988642 4888888865431 1234 578999
Q ss_pred CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 260 ~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++|+.++++..+++...+.| ..+.++|.+.|+.+
T Consensus 142 ~~P~t~vid~~G~i~~~~~G-~~~~~~l~~~i~~~ 175 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAG-DLNPRVWESEIKPL 175 (185)
T ss_pred cCCeEEEECCCceEEEEEec-CCCHHHHHHHHHHH
Confidence 99999999766655666666 78998888888764
No 100
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.24 E-value=5e-11 Score=95.53 Aligned_cols=75 Identities=16% Similarity=0.344 Sum_probs=60.0
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC--CeEEEEEEcCCCc------------------------HHHHHHh
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQ------------------------KEYAKQK 255 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~--~v~~~~vd~~~~~------------------------~~l~~~~ 255 (295)
+++++||+||++||++|+.+.|.++++++.+++. ++.++.|+++... ..+. +.
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~ 94 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE-KQ 94 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH-HH
Confidence 5799999999999999999999999999988763 5788888776531 2345 67
Q ss_pred cCCCCCCeEEEEeCCCCCeeecC
Q 022560 256 LQLGSFPTILFFPKHSSKPIKYP 278 (295)
Q Consensus 256 ~~V~~~Pti~~~~~g~~~~~~~~ 278 (295)
|+|.++|++++++++++ ++...
T Consensus 95 ~~v~~iPt~~lid~~G~-iv~~~ 116 (132)
T cd02964 95 FKVEGIPTLVVLKPDGD-VVTTN 116 (132)
T ss_pred cCCCCCCEEEEECCCCC-EEchh
Confidence 99999999999985553 44443
No 101
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.24 E-value=7.4e-11 Score=88.75 Aligned_cols=69 Identities=23% Similarity=0.442 Sum_probs=57.1
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhc-CCCeEEEEEEcCCCc------------------------HHHHHHhcC
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQ------------------------KEYAKQKLQ 257 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~------------------------~~l~~~~~~ 257 (295)
+|+++|+|||+||++|+.+.|.+.++.+.++ +.++.|+.|+.++.. ..+. +.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL-KKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH-HHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH-HHCC
Confidence 5899999999999999999999999999999 347999999987641 2466 7899
Q ss_pred CCCCCeEEEEeCCCC
Q 022560 258 LGSFPTILFFPKHSS 272 (295)
Q Consensus 258 V~~~Pti~~~~~g~~ 272 (295)
|.++|+++++++.++
T Consensus 80 i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 80 INGIPTLVLLDPDGK 94 (95)
T ss_dssp -TSSSEEEEEETTSB
T ss_pred CCcCCEEEEECCCCC
Confidence 999999999987663
No 102
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.23 E-value=6.4e-11 Score=94.59 Aligned_cols=70 Identities=19% Similarity=0.399 Sum_probs=57.8
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCc-----------------------HHHHHHhc
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQ-----------------------KEYAKQKL 256 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~-----------------------~~l~~~~~ 256 (295)
++++|||+||++||++|+.+.|.+.++.+.+.+ .++.++.|+.+... ..++ +.|
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN-RTF 95 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH-HHc
Confidence 578999999999999999999999999988875 25777777776441 3466 789
Q ss_pred CCCCCCeEEEEeCCCC
Q 022560 257 QLGSFPTILFFPKHSS 272 (295)
Q Consensus 257 ~V~~~Pti~~~~~g~~ 272 (295)
+|.++|++++++.+++
T Consensus 96 ~v~~~P~~~lid~~G~ 111 (131)
T cd03009 96 KIEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCCEEEEECCCCC
Confidence 9999999999985553
No 103
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.22 E-value=8.9e-11 Score=93.21 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=62.1
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEc-----------------------CCCcHHHHHHhcCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-----------------------DGDQKEYAKQKLQL 258 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~-----------------------~~~~~~l~~~~~~V 258 (295)
++++++|+||++||++|+.+.|.++++.+.+ ++.++.|+. |.. ..++ +.|++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~-~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-GRVG-IDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc-chHH-HhcCC
Confidence 5789999999999999999999999998775 266666663 333 5677 78999
Q ss_pred CCCCeEEEEeCCCCCeeecCCCCCCHHHH
Q 022560 259 GSFPTILFFPKHSSKPIKYPSERRDVDSL 287 (295)
Q Consensus 259 ~~~Pti~~~~~g~~~~~~~~gg~~~~e~l 287 (295)
.++|+.+++++.++....+.| ..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G-~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVG-PLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCceEEEEEec-cCChHhc
Confidence 999988888755554666666 6776644
No 104
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.20 E-value=1.7e-10 Score=96.84 Aligned_cols=87 Identities=15% Similarity=0.223 Sum_probs=67.0
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------cHHHHHHhcCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG 259 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~V~ 259 (295)
.+++++|+||++||++|+.+.|.++++++. ++.++.|+.++. +..+. +.|++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~-~~~~v~ 136 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLG-LDLGVY 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchH-HhcCCe
Confidence 589999999999999999999999888653 366776665321 13456 678999
Q ss_pred CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 260 ~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++|+.+++++.+++...+.| ..+.+++.++|+++
T Consensus 137 ~~P~~~~id~~G~i~~~~~G-~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAG-PLNNEVWTEGFLPA 170 (173)
T ss_pred eCCeEEEEcCCceEEEEEec-cCCHHHHHHHHHHH
Confidence 99988888655554555666 78999999988764
No 105
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.18 E-value=7.7e-12 Score=109.90 Aligned_cols=85 Identities=26% Similarity=0.441 Sum_probs=69.8
Q ss_pred HHHHHhcC-------CEEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCCCCCHHHHHHHHHHCCCCCCc
Q 022560 37 LRRALKGL-------RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINS 109 (295)
Q Consensus 37 l~~~l~~~-------~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ 109 (295)
|+.|+..+ ++++.|+|+.+ |..-+..++.- |+.+|+++||..||++|++.|||.+++..++|||.
T Consensus 159 lk~~~~~~~~~~~~~k~i~vg~r~~d-p~g~~~~~~~~-------td~~wp~~~r~~pll~ws~t~vw~~l~~~~~p~c~ 230 (282)
T KOG2644|consen 159 LKKALSLFKKVDPESKAILVGIRNTD-PVGEALAPFER-------TDSLWPQFMRLLPLLEWSYTDVWDLLREGNLPYCG 230 (282)
T ss_pred HHHHHHHhhhhhhhhhhHhhhhhhCC-Cccceecceee-------ccCCchhhhhhcccccchHHHHHHHHhcCCCceee
Confidence 56665543 48999999998 55533333332 34689999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCCCCCC
Q 022560 110 LHSQGYISIGCEPCTRPVLP 129 (295)
Q Consensus 110 ly~~g~~sigc~~ct~~~~~ 129 (295)
||++||+|+|....|+|...
T Consensus 231 ly~qg~TslG~~~~t~pnp~ 250 (282)
T KOG2644|consen 231 LYDQGYTSLGGRSNTSPNPS 250 (282)
T ss_pred eecccccccccccCCCCChh
Confidence 99999999999999996543
No 106
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.17 E-value=9.6e-11 Score=82.48 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=51.3
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEE
Q 022560 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 206 vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~ 266 (295)
-++.|+++||++|+.+.+.+++++..+. ++.+..+|++++ ++++ +++++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~-~~l~-~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEF-PDLA-DEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccC-HhHH-HHcCCcccCEEEE
Confidence 3788999999999999999999987654 499999999998 8999 9999999999865
No 107
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.16 E-value=5.3e-10 Score=87.34 Aligned_cols=101 Identities=10% Similarity=0.104 Sum_probs=78.0
Q ss_pred ccHHHHHhh-cCCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEEcCCC-cHHHHHHhcCCCCCCeEE
Q 022560 191 TGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 191 ~~f~~~i~~-~~~~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~-~~~l~~~~~~V~~~Pti~ 265 (295)
.+|+++++. ..++|+++|+|+++||++|+.+.... .++.+.+.. ++.+..+|.++. ...++ ..|++.++|+++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~-~~~~~~~~P~~~ 81 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFL-QSYKVDKYPHIA 81 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHH-HHhCccCCCeEE
Confidence 345555543 34689999999999999999997754 456777765 688999998752 26788 999999999999
Q ss_pred EEeC-CCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 266 FFPK-HSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 266 ~~~~-g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++.. +++.+....| ..++++|...|++.
T Consensus 82 ~i~~~~g~~l~~~~G-~~~~~~f~~~L~~~ 110 (114)
T cd02958 82 IIDPRTGEVLKVWSG-NITPEDLLSQLIEF 110 (114)
T ss_pred EEeCccCcEeEEEcC-CCCHHHHHHHHHHH
Confidence 9987 4554556666 79999999888763
No 108
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.16 E-value=2e-10 Score=90.42 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=68.3
Q ss_pred ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEc---------------------C
Q 022560 187 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA---------------------D 245 (295)
Q Consensus 187 ~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~---------------------~ 245 (295)
.++++.+..... .+++++|+||++||++|+.+.|.+.++++.+. +..+.+|- +
T Consensus 7 ~~~g~~~~~~~~---~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 7 TLDGEQFDLESL---SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVIND 80 (123)
T ss_pred cCCCCEeeHHHh---CCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence 344444444332 56899999999999999999999999887732 33232221 2
Q ss_pred CCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHH
Q 022560 246 GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMA 289 (295)
Q Consensus 246 ~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~ 289 (295)
.+ ..++ +.|+|.++|+++++++++ +...+.| ..+.+.|.+
T Consensus 81 ~~-~~~~-~~~~i~~~P~~~vid~~g-i~~~~~g-~~~~~~~~~ 120 (123)
T cd03011 81 PD-GVIS-ARWGVSVTPAIVIVDPGG-IVFVTTG-VTSEWGLRL 120 (123)
T ss_pred CC-cHHH-HhCCCCcccEEEEEcCCC-eEEEEec-cCCHHHHHh
Confidence 33 5788 899999999999999887 5666776 788888865
No 109
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=2.7e-10 Score=119.52 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=73.7
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEc---CC-----------------------CcHHHHHHh
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA---DG-----------------------DQKEYAKQK 255 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~---~~-----------------------~~~~l~~~~ 255 (295)
++|+|||+|||+||++|+.+.|.|++++++|+++++.++.|.. ++ .+..+. ++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~-~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLW-RE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHH-Hh
Confidence 5899999999999999999999999999999886688888742 21 014567 78
Q ss_pred cCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 256 LQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 256 ~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
|+|.++|++++|+..++++..+.| ....++|.++|+++
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G-~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSG-EGHRKDLDDLVEAA 535 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEec-ccCHHHHHHHHHHH
Confidence 999999999999654444556666 78889999988764
No 110
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.12 E-value=4.2e-10 Score=86.12 Aligned_cols=76 Identities=24% Similarity=0.412 Sum_probs=63.4
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------cHHHHHHhcCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG 259 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~V~ 259 (295)
.+++++|+||++||++|+...+.+.++.+.+...++.++.|+++.. ...+. +.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELA-KAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHH-HhcCcC
Confidence 3789999999999999999999999999999755699999999873 14677 899999
Q ss_pred CCCeEEEEeCCCCCeeecC
Q 022560 260 SFPTILFFPKHSSKPIKYP 278 (295)
Q Consensus 260 ~~Pti~~~~~g~~~~~~~~ 278 (295)
++|++++++++++.+..+.
T Consensus 97 ~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred ccceEEEECCCCcEEEEec
Confidence 9999999986665444443
No 111
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.07 E-value=8.2e-10 Score=87.71 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=61.5
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC-----C---------------------cHHHHHHh
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----D---------------------QKEYAKQK 255 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----~---------------------~~~l~~~~ 255 (295)
+++++||+||++||++|+...|.++++.+++++.++.++.|+.++ . +..+. +.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~-~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATW-RA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHH-HH
Confidence 478999999999999999999999999999987678888886521 1 13456 67
Q ss_pred cCCCCCCeEEEEeCCCCCeeecCC
Q 022560 256 LQLGSFPTILFFPKHSSKPIKYPS 279 (295)
Q Consensus 256 ~~V~~~Pti~~~~~g~~~~~~~~g 279 (295)
|++.++|+++++++.++....+.|
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEec
Confidence 899999999999766654554444
No 112
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.06 E-value=9.4e-10 Score=85.42 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=51.6
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC-------------------cHHHHHHhcCCCCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-------------------QKEYAKQKLQLGSFP 262 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-------------------~~~l~~~~~~V~~~P 262 (295)
+++++||+||++||++|+.+.|.++++++.+.+ ++.++.+.-++. +..+. +.|++..+|
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~P 97 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELG-MAYQVSKLP 97 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHH-hhcCCCCcC
Confidence 378999999999999999999999999988866 566665531110 12445 677888888
Q ss_pred eEEEEeCCC
Q 022560 263 TILFFPKHS 271 (295)
Q Consensus 263 ti~~~~~g~ 271 (295)
+++++++.+
T Consensus 98 ~~~vid~~G 106 (114)
T cd02967 98 YAVLLDEAG 106 (114)
T ss_pred eEEEECCCC
Confidence 888887655
No 113
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.05 E-value=9e-10 Score=105.90 Aligned_cols=103 Identities=17% Similarity=0.371 Sum_probs=78.8
Q ss_pred ecCcc-cHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHH-H--HHHHhcCCCeEEEEEEcCCCc---HHHHHHhcCCC
Q 022560 187 TLNRT-GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYV-E--LADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLG 259 (295)
Q Consensus 187 ~lt~~-~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~-~--la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~V~ 259 (295)
.++.. ++++.+. .+++|+|+|+|||+||-.||.+++..- + +..+.+ +++..++|.++++ .++. ++|++-
T Consensus 458 ~~s~~~~L~~~la-~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~--~~vlLqaDvT~~~p~~~~lL-k~~~~~ 533 (569)
T COG4232 458 PISPLAELDQALA-EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ--DVVLLQADVTANDPAITALL-KRLGVF 533 (569)
T ss_pred ccCCHHHHHHHHH-hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC--CeEEEEeeecCCCHHHHHHH-HHcCCC
Confidence 34444 6777665 234469999999999999999998764 2 333344 5999999999885 4566 899999
Q ss_pred CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 260 ~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++|++++|..+++......| ..+.+.+.+++++.
T Consensus 534 G~P~~~ff~~~g~e~~~l~g-f~~a~~~~~~l~~~ 567 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTG-FLTADAFLEHLERA 567 (569)
T ss_pred CCCEEEEECCCCCcCcCCcc-eecHHHHHHHHHHh
Confidence 99999999855443444666 89999999999864
No 114
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.04 E-value=1.4e-09 Score=81.20 Aligned_cols=77 Identities=9% Similarity=0.074 Sum_probs=63.6
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 281 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~ 281 (295)
.+..-+..|+++||++|....+.+.++++.+.+ +.+..+|.++. ++++ .+|+|.++||+++ +|+ ..+.| .
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~~~-~e~a-~~~~V~~vPt~vi--dG~---~~~~G-~ 80 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGALF-QDEV-EERGIMSVPAIFL--NGE---LFGFG-R 80 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhHhC-HHHH-HHcCCccCCEEEE--CCE---EEEeC-C
Confidence 355678889999999999999999999988765 99999999998 8999 9999999999975 665 23345 5
Q ss_pred CCHHHHH
Q 022560 282 RDVDSLM 288 (295)
Q Consensus 282 ~~~e~l~ 288 (295)
.+.+++.
T Consensus 81 ~~~~e~~ 87 (89)
T cd03026 81 MTLEEIL 87 (89)
T ss_pred CCHHHHh
Confidence 6666654
No 115
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.03 E-value=3.9e-09 Score=84.02 Aligned_cols=103 Identities=11% Similarity=0.094 Sum_probs=82.8
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEEC--CCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCC
Q 022560 185 LVTLNRTGMENLARLDHRQEPWLVVLYA--PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262 (295)
Q Consensus 185 v~~lt~~~f~~~i~~~~~~k~vvV~Fya--~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~P 262 (295)
...++..+++.++. ..+..+|+|-. .-++-+....=.+.+++++|.+.++.|++||++++ ++++ .+|+|.++|
T Consensus 19 ~~~~~~~~~~~~~~---~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-~~LA-~~fgV~siP 93 (132)
T PRK11509 19 WTPVSESRLDDWLT---QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-EAIG-DRFGVFRFP 93 (132)
T ss_pred CCccccccHHHHHh---CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-HHHH-HHcCCccCC
Confidence 34466788888875 55555555553 34677778888999999999754599999999999 9999 999999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 263 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 263 ti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
|+++|++|+. +-...| ..+.+++.++|+++
T Consensus 94 TLl~FkdGk~-v~~i~G-~~~k~~l~~~I~~~ 123 (132)
T PRK11509 94 ATLVFTGGNY-RGVLNG-IHPWAELINLMRGL 123 (132)
T ss_pred EEEEEECCEE-EEEEeC-cCCHHHHHHHHHHH
Confidence 9999999984 444555 78999999999875
No 116
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.02 E-value=2.8e-09 Score=89.46 Aligned_cols=83 Identities=17% Similarity=0.327 Sum_probs=64.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC------------cHHHHHHhcCC--CCCCeEEEEeCCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------QKEYAKQKLQL--GSFPTILFFPKHSS 272 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------~~~l~~~~~~V--~~~Pti~~~~~g~~ 272 (295)
+|+||++||++|+++.|.+.+++++++ +.++.|+++.. ...+. ..|++ .++|+.++++..++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~-~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPYTLDGQGDTAFPEALPAPPDVMQ-TFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCCceEecCchhHHH-HHhCCCCCCCCeEEEEeCCCc
Confidence 778999999999999999999999983 67776766533 12355 68885 69999999977665
Q ss_pred Cee-ecCCCCCCHHHHHHHHHHh
Q 022560 273 KPI-KYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 273 ~~~-~~~gg~~~~e~l~~fi~~l 294 (295)
+.. .+.| ..+.++|.+.|+++
T Consensus 149 i~~~~~~G-~~~~~~L~~~I~~l 170 (181)
T PRK13728 149 EALPLLQG-ATDAAGFMARMDTV 170 (181)
T ss_pred EEEEEEEC-CCCHHHHHHHHHHH
Confidence 433 4666 79999998888764
No 117
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.02 E-value=1.3e-09 Score=86.66 Aligned_cols=84 Identities=13% Similarity=0.155 Sum_probs=56.8
Q ss_pred cHHHHHhh-cCCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEE
Q 022560 192 GMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 267 (295)
Q Consensus 192 ~f~~~i~~-~~~~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~ 267 (295)
+|++.+.. ..++|+|+|+|+++||++|+.|...+ .++.+.... ++..+.++.+..+..+. ..+ .++||++|+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~--~~g-~~vPtivFl 86 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS--PDG-QYVPRIMFV 86 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC--ccC-cccCeEEEE
Confidence 45555443 34789999999999999999999876 345665544 57777787764322222 223 689999999
Q ss_pred eCCCCCeeecCC
Q 022560 268 PKHSSKPIKYPS 279 (295)
Q Consensus 268 ~~g~~~~~~~~g 279 (295)
+..++.+....|
T Consensus 87 d~~g~vi~~i~G 98 (130)
T cd02960 87 DPSLTVRADITG 98 (130)
T ss_pred CCCCCCcccccc
Confidence 776654444443
No 118
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.02 E-value=2.8e-09 Score=86.61 Aligned_cols=77 Identities=25% Similarity=0.428 Sum_probs=64.6
Q ss_pred CCCcEEEEEECC-CChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHhcCCC-
Q 022560 202 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLG- 259 (295)
Q Consensus 202 ~~k~vvV~Fya~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~V~- 259 (295)
+++++||.||++ ||++|+...|.+.++.+.++++++.++.|..+.+ +..+. +.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALA-KALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHH-HHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHH-HHhCCcc
Confidence 689999999999 9999999999999999998886788888876654 13677 789988
Q ss_pred --------CCCeEEEEeCCCCCeeecCC
Q 022560 260 --------SFPTILFFPKHSSKPIKYPS 279 (295)
Q Consensus 260 --------~~Pti~~~~~g~~~~~~~~g 279 (295)
++|++++++..+++.....|
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeC
Confidence 99999999887765555555
No 119
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.00 E-value=1.2e-09 Score=80.17 Aligned_cols=65 Identities=23% Similarity=0.464 Sum_probs=50.7
Q ss_pred CCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeC
Q 022560 201 HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 269 (295)
Q Consensus 201 ~~~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~ 269 (295)
.++|+++|+|+++||++|+.+...+ .++.+.+.. ++.++.||.++.+.... +...++|++++++.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~~~~~~---~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDEDPNAQ---FDRQGYPTFFFLDP 82 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTHHHHHH---HHHCSSSEEEEEET
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCCChhHH---hCCccCCEEEEeCC
Confidence 4799999999999999999999888 456664554 79999999987733222 22267999999863
No 120
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.00 E-value=4.3e-09 Score=89.71 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=62.3
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEE-------------cCC----CcHHHHHHhcCCCCCCeE
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR-------------ADG----DQKEYAKQKLQLGSFPTI 264 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd-------------~~~----~~~~l~~~~~~V~~~Pti 264 (295)
++++++|+||++||++|+.+.|.+.++.+.+.. ++.++..| .+. ...++. +.|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~-~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET-DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIG-MAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC-cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHH-HhccCCccceE
Confidence 578999999999999999999999998876532 34444321 000 014667 78999999999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 265 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 265 ~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+++++.++ +.+.|.....+.+.+.++.+
T Consensus 151 ~lID~~G~--I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGK--IRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCe--EEEccCCCCHHHHHHHHHHH
Confidence 99976653 33344334567777777654
No 121
>smart00594 UAS UAS domain.
Probab=98.99 E-value=7.9e-09 Score=81.81 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=75.6
Q ss_pred CcccHHHHHhh-cCCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEEcCCCc-HHHHHHhcCCCCCCe
Q 022560 189 NRTGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPT 263 (295)
Q Consensus 189 t~~~f~~~i~~-~~~~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~V~~~Pt 263 (295)
-..+|+++++. ..++|+++|+|+++||++|+.+...+ .++.+.+.. ++.+..+|++..+ ..++ ..|++.++|+
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~-~~~~~~~~P~ 89 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVS-QFYKLDSFPY 89 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHH-HhcCcCCCCE
Confidence 34566666544 34678999999999999999998765 456666765 7888889987652 5778 9999999999
Q ss_pred EEEEeCCC-C----CeeecCCCCCCHHHHHHHH
Q 022560 264 ILFFPKHS-S----KPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 264 i~~~~~g~-~----~~~~~~gg~~~~e~l~~fi 291 (295)
++++...+ . ......| ..+.++|+.+|
T Consensus 90 ~~~l~~~~g~~~~~~~~~~~G-~~~~~~l~~~l 121 (122)
T smart00594 90 VAIVDPRTGQRVIEWVGVVEG-EISPEELMTFL 121 (122)
T ss_pred EEEEecCCCceeEEEeccccC-CCCHHHHHHhh
Confidence 99996543 1 2334455 89999999876
No 122
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.97 E-value=4.7e-09 Score=90.20 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=40.8
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 245 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~ 245 (295)
++++|||+|||+||++|+...|.+.++.++|++.++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 57899999999999999999999999999998877999999874
No 123
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.96 E-value=8.2e-09 Score=90.63 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=70.7
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---HHHHHHhcC--------------
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQKLQ-------------- 257 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~---~~l~~~~~~-------------- 257 (295)
.+++|||+|||+||++|+...|.|.++.++|++.++.++.|+++. .. ..++.++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 478999999999999999999999999999988779999999742 10 122101211
Q ss_pred --------------------CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 258 --------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 258 --------------------V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
|...|+.++++..++++..+.| ..+.++|.+.|+++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G-~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP-TTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 1235889999877776777777 68999999999875
No 124
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.95 E-value=2e-10 Score=98.18 Aligned_cols=101 Identities=21% Similarity=0.444 Sum_probs=91.8
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCC
Q 022560 183 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262 (295)
Q Consensus 183 ~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~P 262 (295)
..+..++.+|+..+++ +-+++.|+||||+.|+...|+++.++.--.+-.|.+++||+..+ +.|. -+|-|...|
T Consensus 24 s~~~~~~eenw~~~l~-----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n-pgLs-GRF~vtaLp 96 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT-----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN-PGLS-GRFLVTALP 96 (248)
T ss_pred ceeEEecccchhhhhc-----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec-cccc-eeeEEEecc
Confidence 3688899999999874 78999999999999999999999998877777899999999999 8998 899999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 022560 263 TILFFPKHSSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 263 ti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
||+-.++|. .-+|.| .++.++++.|+..
T Consensus 97 tIYHvkDGe--Frrysg-aRdk~dfisf~~~ 124 (248)
T KOG0913|consen 97 TIYHVKDGE--FRRYSG-ARDKNDFISFEEH 124 (248)
T ss_pred eEEEeeccc--cccccC-cccchhHHHHHHh
Confidence 999999998 788888 8999999999863
No 125
>PLN02412 probable glutathione peroxidase
Probab=98.89 E-value=1.7e-08 Score=84.26 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=69.2
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC-------CcHHH----HHHhcC-------------
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQKEY----AKQKLQ------------- 257 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~~~l----~~~~~~------------- 257 (295)
.++++||+||++||++|+...|.|.++.++|++.++.++.|+++. ...++ . ++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~-~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVC-TRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHH-HccCCCCceEeEEeeCC
Confidence 478999999999999999999999999999998779999998742 10111 1 2111
Q ss_pred ---------------------CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 258 ---------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 258 ---------------------V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
|...|+.++++.+++++..+.| ..+.++|.+.|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g-~~~~~~l~~~i~~~ 163 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAP-TTSPLKIEKDIQNL 163 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 3345888888776665666666 78899999888765
No 126
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=98.87 E-value=1.1e-09 Score=98.32 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=70.1
Q ss_pred CEEEEeeeccCCCcccCC-------CCceecCCcccccc-CCCCCEEEEeeCCCCCHHHHHHHHHHCCCCCCccccCCcc
Q 022560 45 RAWITGQRKDQSPGTRSE-------IPVVQVDPVFEGLE-GGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYI 116 (295)
Q Consensus 45 ~~~~~G~R~~es~~~R~~-------~~~~~~~~~~~~~~-~~~~~~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~ 116 (295)
.|++.|+|+||| -+|-. +. ..+++-+.+. ...++...+.||.||..+|||.+-.+++.+||||||+.|+
T Consensus 165 ta~LvGiRadES-lNRf~ai~~~~k~~--~~~~~pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~yN~LYDlmYq 241 (407)
T COG3969 165 TAVLVGIRADES-LNRFNAIARKEKLR--FADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAYNPLYDLMYQ 241 (407)
T ss_pred eEEEEeecchhh-HHHHHHHHHhhhcc--cCCCCCceeeecCCCceEEEEecccchHHHHHHHHHhcCCcccHHHHHHHH
Confidence 389999999999 58742 22 1222112222 1335689999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCC--Ccccccccc
Q 022560 117 SIGCEPCTRPVLP--GQHEREGRW 138 (295)
Q Consensus 117 sigc~~ct~~~~~--~~~~r~gr~ 138 (295)
. |-++..+.+++ +...|.|.|
T Consensus 242 A-Gvp~~~MRVc~Pfgd~qr~gL~ 264 (407)
T COG3969 242 A-GVPLRQMRVCEPFGDEQRKGLW 264 (407)
T ss_pred c-CCChhhccccCCCChhhhcccc
Confidence 7 99999998887 567788876
No 127
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.87 E-value=2.1e-08 Score=82.35 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=68.3
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcC--------CC--cHHHHHHhcCC-------------
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD--------GD--QKEYAKQKLQL------------- 258 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~--------~~--~~~l~~~~~~V------------- 258 (295)
++|++||.|||+||++|+...|.+.++.+.|++.++.++.|+++ .. -..++++++++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 57889999999999999999999999999998778999999862 11 02233111111
Q ss_pred -------------CCCCe----EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 259 -------------GSFPT----ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 259 -------------~~~Pt----i~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
..+|+ .++++..++....+.| ..+.++|...|+++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g-~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP-EEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECC-CCCHHHHHHHHHHh
Confidence 14786 7777666665666666 78999999988875
No 128
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.5e-09 Score=88.41 Aligned_cols=87 Identities=21% Similarity=0.399 Sum_probs=73.8
Q ss_pred CCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCC--
Q 022560 183 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG-- 259 (295)
Q Consensus 183 ~~v~~lt~-~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~-- 259 (295)
..+..++. +.+++.+. .++.+.|+|.|||.|.+.|+.+.|.|.+|+.+|....++|++||+..- ++.+ .+|+|.
T Consensus 124 e~ikyf~~~q~~deel~-rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-pd~a-~kfris~s 200 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELD-RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-PDVA-AKFRISLS 200 (265)
T ss_pred hheeeecchhhHHHHhc-cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-cChH-HheeeccC
Confidence 44666744 44555443 456779999999999999999999999999999988899999999999 8889 999884
Q ss_pred ----CCCeEEEEeCCCC
Q 022560 260 ----SFPTILFFPKHSS 272 (295)
Q Consensus 260 ----~~Pti~~~~~g~~ 272 (295)
.+||+++|.+|++
T Consensus 201 ~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKE 217 (265)
T ss_pred cccccCCeEEEEccchh
Confidence 7999999999985
No 129
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.80 E-value=5.9e-08 Score=81.11 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=69.7
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------------cHHHHH
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------------QKEYAK 253 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------------~~~l~~ 253 (295)
.++++||+||++||+.|....+.+.++.+++++.++.|+.|+.+.. +..+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~- 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA- 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH-
Confidence 5789999999999999999999999999999865799999987541 12456
Q ss_pred HhcCCCCCCeEEEEeCCCCCeeec-----CC---CCCCHHHHHHHHHHh
Q 022560 254 QKLQLGSFPTILFFPKHSSKPIKY-----PS---ERRDVDSLMAFVDAL 294 (295)
Q Consensus 254 ~~~~V~~~Pti~~~~~g~~~~~~~-----~g---g~~~~e~l~~fi~~l 294 (295)
+.|++..+|+++++++++++.... .+ +..+.+++.+.|+++
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHH
Confidence 688999999999998666422221 00 124567788877754
No 130
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.80 E-value=1.9e-08 Score=89.85 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=78.8
Q ss_pred CCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCC
Q 022560 183 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 261 (295)
Q Consensus 183 ~~v~~lt~-~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~ 261 (295)
+.|.+++. ++|-+.+....++..|||+||.+.++.|..|...|..||..|.. ++|++|..... + +. .+|.+..+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~-~-~~-~~f~~~~L 199 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKC-P-AS-ENFPDKNL 199 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGC-C-TT-TTS-TTC-
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhcc-C-cc-cCCcccCC
Confidence 46788864 78888776444566899999999999999999999999999998 99999998876 4 56 78999999
Q ss_pred CeEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHHh
Q 022560 262 PTILFFPKHSSK-----PIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 262 Pti~~~~~g~~~-----~~~~~gg~~~~e~l~~fi~~l 294 (295)
||+++|++|..+ +....|...+.++|..||.++
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999998631 223334467889999998753
No 131
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.77 E-value=2.8e-08 Score=83.93 Aligned_cols=85 Identities=9% Similarity=-0.014 Sum_probs=63.5
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEE------EEEEcCCC----------------------------
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV------GKFRADGD---------------------------- 247 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~------~~vd~~~~---------------------------- 247 (295)
.+|++||+|||+||++|+...|.+.+++.. ++.+ ..||.++.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 599999999999999999999999999543 3444 55565542
Q ss_pred cHHHHHHhcCCCCCCeE-EEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 248 QKEYAKQKLQLGSFPTI-LFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 248 ~~~l~~~~~~V~~~Pti-~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
+..+. ..|++.++|+. ++++..+++...+.| ..+.+++.+++.
T Consensus 134 ~g~v~-~~~gv~~~P~T~fVIDk~GkVv~~~~G-~l~~ee~e~~~~ 177 (184)
T TIGR01626 134 KGAVK-NAWQLNSEDSAIIVLDKTGKVKFVKEG-ALSDSDIQTVIS 177 (184)
T ss_pred cchHH-HhcCCCCCCceEEEECCCCcEEEEEeC-CCCHHHHHHHHH
Confidence 12345 68899999888 788777766677777 678777766443
No 132
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.77 E-value=3e-08 Score=81.38 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=39.3
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 245 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~ 245 (295)
++++|||+|||+||+ |+...|.|++++++|++.++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 478999999999999 9999999999999998767999999764
No 133
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.70 E-value=1.1e-07 Score=72.13 Aligned_cols=67 Identities=33% Similarity=0.610 Sum_probs=60.8
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcC-CCcHHHHHHhcC--CCCCCeEEEEeCCCC
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQ--LGSFPTILFFPKHSS 272 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~~~~~--V~~~Pti~~~~~g~~ 272 (295)
+++++|.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .. ..+. ..|+ +..+|+++++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~-~~~~-~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDEN-PDLA-AEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCC-hHHH-HHHhhhhccCCeEEEEeCcch
Confidence 78999999999999999999999999999986 6999999997 56 7888 8899 999999999988875
No 134
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.65 E-value=1.7e-07 Score=75.25 Aligned_cols=87 Identities=10% Similarity=0.104 Sum_probs=67.0
Q ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHhcCCCC
Q 022560 202 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS 260 (295)
Q Consensus 202 ~~k~vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~V~~ 260 (295)
.+++++|.|| +.||+.|....+.+.++.+.+.+.++.++.|..+.. +..+. +.|++..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLA-KAYGVWG 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHH-HHhCCcc
Confidence 4789999999 589999999999999999998766788888876542 13566 7889888
Q ss_pred C---------CeEEEEeCCCCCeeecCCCCCCHHHHHHH
Q 022560 261 F---------PTILFFPKHSSKPIKYPSERRDVDSLMAF 290 (295)
Q Consensus 261 ~---------Pti~~~~~g~~~~~~~~gg~~~~e~l~~f 290 (295)
. |+++++++.+++...+.| ....+++.+-
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g-~~~~~~~~~~ 138 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRK-VKPKGHAEEV 138 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEec-CCccchHHHH
Confidence 8 899999876665666666 4555555543
No 135
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.63 E-value=1.6e-07 Score=66.40 Aligned_cols=70 Identities=20% Similarity=0.394 Sum_probs=53.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD 283 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~ 283 (295)
+..|+++||++|+.+.+.|.+ . ++.+..+|++++. .++. +.+++.++|++++. |+ . ..| .+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~--~i~~~~vdi~~~~~~~~~~~-~~~~~~~vP~~~~~--~~--~--~~g--~~ 65 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----K--GIAFEEIDVEKDSAAREEVL-KVLGQRGVPVIVIG--HK--I--IVG--FD 65 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----C--CCeEEEEeccCCHHHHHHHH-HHhCCCcccEEEEC--CE--E--Eee--CC
Confidence 578999999999999888765 1 4888999998762 1245 67899999999985 43 2 334 57
Q ss_pred HHHHHHHHH
Q 022560 284 VDSLMAFVD 292 (295)
Q Consensus 284 ~e~l~~fi~ 292 (295)
.+.|.++|+
T Consensus 66 ~~~i~~~i~ 74 (74)
T TIGR02196 66 PEKLDQLLE 74 (74)
T ss_pred HHHHHHHhC
Confidence 788888874
No 136
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.57 E-value=4.5e-07 Score=76.83 Aligned_cols=92 Identities=17% Similarity=0.301 Sum_probs=64.0
Q ss_pred CCCcE-EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---HHHHHHhc--------------
Q 022560 202 RQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQKL-------------- 256 (295)
Q Consensus 202 ~~k~v-vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~---~~l~~~~~-------------- 256 (295)
++++| |+.+||+||++|+...|.++++.+.|++.++.++.|+++. .. ..+..+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 46754 4566999999999999999999999987679999998642 00 01110111
Q ss_pred ----------------------CCCCCCe---EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 257 ----------------------QLGSFPT---ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 257 ----------------------~V~~~Pt---i~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++.++|+ .++++..+.++..+.| ..+.+++.+.|.++
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g-~~~~~~l~~~I~~l 180 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSP-KVNPNEMIQDIEKL 180 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECC-CCCHHHHHHHHHHH
Confidence 2446784 4677666655566666 68888888888765
No 137
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.56 E-value=5.6e-07 Score=76.50 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=68.9
Q ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------cHHHHHHhc
Q 022560 202 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL 256 (295)
Q Consensus 202 ~~k~vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~ 256 (295)
.++++||+|| +.||++|....+.|.++.+.+.+.++.++.|+.+.. +..++ +.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a-~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLT-RNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHH-HHh
Confidence 4789999999 999999999999999999998765677777776531 13566 788
Q ss_pred CCC------CCCeEEEEeCCCCCeeecC---CCCCCHHHHHHHHHHhC
Q 022560 257 QLG------SFPTILFFPKHSSKPIKYP---SERRDVDSLMAFVDALR 295 (295)
Q Consensus 257 ~V~------~~Pti~~~~~g~~~~~~~~---gg~~~~e~l~~fi~~l~ 295 (295)
+|. ..|+.++++..+.+...+. ...++.++|.+.|++++
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~ 156 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQ 156 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 886 4699999975554333221 11358899988887653
No 138
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.55 E-value=4.4e-07 Score=71.15 Aligned_cols=70 Identities=24% Similarity=0.535 Sum_probs=60.3
Q ss_pred CCCcEEEEEECC-CChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHhcCCC-
Q 022560 202 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLG- 259 (295)
Q Consensus 202 ~~k~vvV~Fya~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~V~- 259 (295)
.++++||.||+. ||++|+...+.+.++.++++..++.++.|..+.. +..+. +.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELA-KAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHH-HHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHH-HHcCCcc
Confidence 479999999999 9999999999999999999876799999987653 13566 788888
Q ss_pred -----CCCeEEEEeCCCC
Q 022560 260 -----SFPTILFFPKHSS 272 (295)
Q Consensus 260 -----~~Pti~~~~~g~~ 272 (295)
.+|+++++++++.
T Consensus 103 ~~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGK 120 (124)
T ss_dssp TTTSEESEEEEEEETTSB
T ss_pred ccCCceEeEEEEECCCCE
Confidence 8999999988774
No 139
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.55 E-value=8.2e-07 Score=77.13 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=68.9
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHhcCCCCCCeEEEEeCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------~~~l~~~~~~V~~~Pti~~~~~g~ 271 (295)
.++.-|++||.+.|+.|+.+.|.+..+++.| ++.+..|++|.. +..++ ++++|..+|+++++..+.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~~g~~-~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPDPGQA-KRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCCHHHH-HHcCCCcCCEEEEEECCC
Confidence 3677899999999999999999999999999 367777776631 26788 899999999999998776
Q ss_pred CCeeecCCCCCCHHHHHHHH
Q 022560 272 SKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 272 ~~~~~~~gg~~~~e~l~~fi 291 (295)
.......-|..+.++|.+-|
T Consensus 195 ~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CeEEEEeeecCCHHHHHHhh
Confidence 43444444589999987643
No 140
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.55 E-value=4.3e-07 Score=61.04 Aligned_cols=61 Identities=39% Similarity=0.776 Sum_probs=50.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH--HhcCCCCCCeEEEEeCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKH 270 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~--~~~~V~~~Pti~~~~~g 270 (295)
++.||++||++|+.+.+.+.++ +... .++.+..+|++.. ..... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN-KGVKFEAVDVDED-PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC-CCcEEEEEEcCCC-hHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3333 3799999999998 55541 27899999999999877
No 141
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.55 E-value=6.7e-07 Score=74.95 Aligned_cols=92 Identities=12% Similarity=0.154 Sum_probs=69.0
Q ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 022560 202 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 253 (295)
Q Consensus 202 ~~k~vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~ 253 (295)
+++.+||+|| +.||++|....+.|.+++++|.+.++.++.|..+.. ...++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~- 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS- 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH-
Confidence 4689999999 899999999999999999999776788888876542 12455
Q ss_pred HhcCCC------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 022560 254 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL 294 (295)
Q Consensus 254 ~~~~V~------~~Pti~~~~~g~~~~~~~~g---g~~~~e~l~~fi~~l 294 (295)
+.|++. ..|+++++++.+.+...+.+ ...+.++|.+.|+++
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 677875 57899999866654444422 135678888888765
No 142
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.54 E-value=1.1e-06 Score=79.66 Aligned_cols=108 Identities=19% Similarity=0.313 Sum_probs=76.6
Q ss_pred cccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHH------HHHHHHHHHh-cCCCeEEEEEEcCCCcHH
Q 022560 178 DIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAME------GSYVELADKL-AGNGVKVGKFRADGDQKE 250 (295)
Q Consensus 178 ~~~~~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~------p~~~~la~~~-~~~~v~~~~vd~~~~~~~ 250 (295)
..-....|+.|+.+||+++++ +-+.++|+||.|-- .-+... ..+-+|+.+. ..++|.|+.||..++ ..
T Consensus 29 ~YDGkDRVi~LneKNfk~~lK---kyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd-~k 103 (383)
T PF01216_consen 29 EYDGKDRVIDLNEKNFKRALK---KYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD-AK 103 (383)
T ss_dssp S-SSS--CEEE-TTTHHHHHH---H-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT-HH
T ss_pred cCCCccceEEcchhHHHHHHH---hhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH-HH
Confidence 333457899999999999987 67788888888763 333332 2234444444 447899999999999 99
Q ss_pred HHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 251 YAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 251 l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++ +++++...+++++|++|. .+.|.| .++++-|+.||-.+
T Consensus 104 lA-KKLgv~E~~SiyVfkd~~--~IEydG-~~saDtLVeFl~dl 143 (383)
T PF01216_consen 104 LA-KKLGVEEEGSIYVFKDGE--VIEYDG-ERSADTLVEFLLDL 143 (383)
T ss_dssp HH-HHHT--STTEEEEEETTE--EEEE-S---SHHHHHHHHHHH
T ss_pred HH-HhcCccccCcEEEEECCc--EEEecC-ccCHHHHHHHHHHh
Confidence 99 999999999999999998 899998 89999999999764
No 143
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.3e-06 Score=69.04 Aligned_cols=90 Identities=19% Similarity=0.337 Sum_probs=71.7
Q ss_pred cCCCCcEEEEEECCCChhHHHHHHHHH---HHHHHhcCCCeEEEEEEcCCC---------------cHHHHHHhcCCCCC
Q 022560 200 DHRQEPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGD---------------QKEYAKQKLQLGSF 261 (295)
Q Consensus 200 ~~~~k~vvV~Fya~wC~~C~~~~p~~~---~la~~~~~~~v~~~~vd~~~~---------------~~~l~~~~~~V~~~ 261 (295)
...++..+++|-++.|++|..++..+. .+.+.+.. .+.++.+++... ..+|+ +.|+|+++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa-~kf~vrst 116 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELA-QKFAVRST 116 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHH-HHhccccC
Confidence 347899999999999999999998873 35555665 688888887543 15899 99999999
Q ss_pred CeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 262 PTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 262 Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
||+++|+..++.+....| ...++++..-++
T Consensus 117 PtfvFfdk~Gk~Il~lPG-Y~ppe~Fl~vlk 146 (182)
T COG2143 117 PTFVFFDKTGKTILELPG-YMPPEQFLAVLK 146 (182)
T ss_pred ceEEEEcCCCCEEEecCC-CCCHHHHHHHHH
Confidence 999999877665666666 788888876654
No 144
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.50 E-value=2.5e-07 Score=75.32 Aligned_cols=70 Identities=14% Similarity=0.347 Sum_probs=56.9
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCc------------------------HHHHHHh
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQ------------------------KEYAKQK 255 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~------------------------~~l~~~~ 255 (295)
.+|.|.++|-|.||++|+.+.|.+.++.++.++ ..+.++-|+-|.+. .+++ ++
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~-~k 110 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS-EK 110 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH-Hh
Confidence 589999999999999999999999999998877 23666666555431 3567 79
Q ss_pred cCCCCCCeEEEEeCCCC
Q 022560 256 LQLGSFPTILFFPKHSS 272 (295)
Q Consensus 256 ~~V~~~Pti~~~~~g~~ 272 (295)
|.|.++|++++.+..+.
T Consensus 111 y~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGT 127 (157)
T ss_pred cccCcCceeEEecCCCC
Confidence 99999999999977664
No 145
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.49 E-value=1.2e-06 Score=71.87 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=63.7
Q ss_pred CCCcEEEEEECC-CChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHhcCCCC
Q 022560 202 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS 260 (295)
Q Consensus 202 ~~k~vvV~Fya~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~V~~ 260 (295)
+++++||.||+. ||+.|....+.+.++.+.+++.++.++.|+.+.. +..+. +.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVA-EQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHH-HHhCCCc
Confidence 578999999976 6888999999999999999876788998887542 13566 6788765
Q ss_pred C------------CeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 261 F------------PTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 261 ~------------Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
. |+.+++++.+.+...+.| ....+.+.+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g-~~~~~~~~~~~~ 150 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDK-FKTSNHHDVVLD 150 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcC-CCcchhHHHHHH
Confidence 4 677888766655566665 343444444333
No 146
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.47 E-value=9.2e-07 Score=63.33 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=49.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHh-----cCCCCCCeEEEEeCCCCCeeecCCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK-----LQLGSFPTILFFPKHSSKPIKYPSER 281 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~-----~~V~~~Pti~~~~~g~~~~~~~~gg~ 281 (295)
++.|+++||++|+.+++.+.++ ++.+-.+|++++ .... .. +++.++|++ ++.+|. ... .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~-~~~~-~~~~~~~~~~~~vP~i-~~~~g~--~l~----~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEED-EGAA-DRVVSVNNGNMTVPTV-KFADGS--FLT----N 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCC-HhHH-HHHHHHhCCCceeCEE-EECCCe--Eec----C
Confidence 6789999999999999988665 355667888776 4444 33 489999997 566664 222 2
Q ss_pred CCHHHHHHHHH
Q 022560 282 RDVDSLMAFVD 292 (295)
Q Consensus 282 ~~~e~l~~fi~ 292 (295)
.+..++.+.|.
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 35566666654
No 147
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.43 E-value=2e-06 Score=73.14 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=71.0
Q ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------cHHHHHHhc
Q 022560 202 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL 256 (295)
Q Consensus 202 ~~k~vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~ 256 (295)
.++.+||.|| +.||+.|....+.|.++.+++.+.++.++.|+.+.. +..++ +.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia-~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALT-RNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHH-HHc
Confidence 4679999999 999999999999999999999766788888876542 14667 788
Q ss_pred CC----CCC--CeEEEEeCCCCCeeecC---CCCCCHHHHHHHHHHhC
Q 022560 257 QL----GSF--PTILFFPKHSSKPIKYP---SERRDVDSLMAFVDALR 295 (295)
Q Consensus 257 ~V----~~~--Pti~~~~~g~~~~~~~~---gg~~~~e~l~~fi~~l~ 295 (295)
++ .++ |+.++++.++.+...+. +..++.+++.+.|+.+|
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 88 356 99999986654322221 22478999999998775
No 148
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.41 E-value=2e-06 Score=69.55 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=36.8
Q ss_pred CCcEEEEE-ECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 022560 203 QEPWLVVL-YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247 (295)
Q Consensus 203 ~k~vvV~F-ya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 247 (295)
+++++|.| +++||++|+...|.+.++.+++.+.++.++.|+.+..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 45555555 5999999999999999999999765799999987654
No 149
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.40 E-value=4.3e-07 Score=75.79 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=71.9
Q ss_pred ceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 185 LVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 185 v~~lt-~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
..++. ..+|-+.+. +...||++||-+.-..|+-|...++.||+.+-+ ..|++||++.. +-|+ .+++|+.+|+
T Consensus 68 y~ev~~Ekdf~~~~~---kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae~~-PFlv-~kL~IkVLP~ 140 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVK---KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAEKA-PFLV-TKLNIKVLPT 140 (211)
T ss_pred EEEeccHHHHHHHhh---cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecccC-ceee-eeeeeeEeee
Confidence 34444 566766664 678899999999999999999999999999988 89999999999 9999 9999999999
Q ss_pred EEEEeCCCC
Q 022560 264 ILFFPKHSS 272 (295)
Q Consensus 264 i~~~~~g~~ 272 (295)
+.+|++|+.
T Consensus 141 v~l~k~g~~ 149 (211)
T KOG1672|consen 141 VALFKNGKT 149 (211)
T ss_pred EEEEEcCEE
Confidence 999999984
No 150
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.39 E-value=2.5e-06 Score=71.17 Aligned_cols=88 Identities=10% Similarity=0.146 Sum_probs=64.5
Q ss_pred CCCcEEEEEECCC-ChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------cHHHHHHhcCC
Q 022560 202 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQL 258 (295)
Q Consensus 202 ~~k~vvV~Fya~w-C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~V 258 (295)
.++++||+||+.| |++|....|.|.++++.+. ++.++.|+.|.. ...++ +.|++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~-~~~gv 119 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFG-KAYGV 119 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHH-HHhCC
Confidence 4789999999999 9999999999999999884 488888876531 12667 78898
Q ss_pred CCCC---------eEEEEeCCCCCeeecC----CCCCCHHHHHHHHH
Q 022560 259 GSFP---------TILFFPKHSSKPIKYP----SERRDVDSLMAFVD 292 (295)
Q Consensus 259 ~~~P---------ti~~~~~g~~~~~~~~----gg~~~~e~l~~fi~ 292 (295)
...| +.++++..+.+...+. ....+.++++++|+
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 8777 8888875554333332 11345677777664
No 151
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.38 E-value=7.7e-06 Score=68.50 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=85.9
Q ss_pred CCCceecCcccHHHHHhhcCCCCc-EEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCC-
Q 022560 182 SQNLVTLNRTGMENLARLDHRQEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG- 259 (295)
Q Consensus 182 ~~~v~~lt~~~f~~~i~~~~~~k~-vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~- 259 (295)
-+.|.++|..++..+.. .+.+ +++.|..........+...+.++++.+++ .+.|+.+|++.. ..++ +.+++.
T Consensus 76 ~P~v~~~t~~n~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~-~~~~-~~~~i~~ 149 (184)
T PF13848_consen 76 FPLVPELTPENFEKLFS---SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDF-PRLL-KYFGIDE 149 (184)
T ss_dssp STSCEEESTTHHHHHHS---TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTT-HHHH-HHTTTTT
T ss_pred cccccccchhhHHHHhc---CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHh-HHHH-HHcCCCC
Confidence 35689999999999885 5555 88888877788889999999999999998 799999999987 8899 899998
Q ss_pred -CCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHH
Q 022560 260 -SFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 260 -~~Pti~~~~~g~~~-~~~~~gg~~~~e~l~~fi~~ 293 (295)
.+|++++++..... ...+.+ ..+.++|.+||+.
T Consensus 150 ~~~P~~vi~~~~~~~~~~~~~~-~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 150 DDLPALVIFDSNKGKYYYLPEG-EITPESIEKFLND 184 (184)
T ss_dssp SSSSEEEEEETTTSEEEE--SS-CGCHHHHHHHHHH
T ss_pred ccCCEEEEEECCCCcEEcCCCC-CCCHHHHHHHhcC
Confidence 99999999844332 233355 8999999999974
No 152
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.37 E-value=2.6e-06 Score=73.39 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=68.7
Q ss_pred CCCcEEE-EEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHH
Q 022560 202 RQEPWLV-VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQ 254 (295)
Q Consensus 202 ~~k~vvV-~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~ 254 (295)
.++.+|| .|+++||+.|....+.|.++.+++++.++.++.|+++.. +..++ +
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia-~ 104 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA-R 104 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH-H
Confidence 3565554 688999999999999999999999876788888876631 14566 7
Q ss_pred hcCCC------CCCeEEEEeCCCCCeeec----CCCCCCHHHHHHHHHHhC
Q 022560 255 KLQLG------SFPTILFFPKHSSKPIKY----PSERRDVDSLMAFVDALR 295 (295)
Q Consensus 255 ~~~V~------~~Pti~~~~~g~~~~~~~----~gg~~~~e~l~~fi~~l~ 295 (295)
.|++. .+|+++++++++.+.... .+ .++.+++...|+.++
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~-gr~~~ellr~l~~l~ 154 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAET-GRNIDEIIRITKALQ 154 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCC-CCCHHHHHHHHHHhh
Confidence 78874 589999998666432222 23 489999999998764
No 153
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.36 E-value=2.9e-06 Score=68.85 Aligned_cols=88 Identities=14% Similarity=0.225 Sum_probs=62.1
Q ss_pred CcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------c--HHHHHHhcCCCC
Q 022560 204 EPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------Q--KEYAKQKLQLGS 260 (295)
Q Consensus 204 k~vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~--~~l~~~~~~V~~ 260 (295)
++++|.|| ++||+.|....|.+.++.+++++.++.++.|+.+.. + ..+. +.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~g~~~ 107 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVA-KAYGVFD 107 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHH-HHhCCcc
Confidence 78888887 999999999999999999999766788888876541 1 3456 6778763
Q ss_pred ----C--CeEEEEeCCCCCeeecCCC---CCCHHHHHHHHH
Q 022560 261 ----F--PTILFFPKHSSKPIKYPSE---RRDVDSLMAFVD 292 (295)
Q Consensus 261 ----~--Pti~~~~~g~~~~~~~~gg---~~~~e~l~~fi~ 292 (295)
+ |++++++..+++...+.|. ..+..++.+-|+
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 3 3788887655444444442 245555555443
No 154
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.35 E-value=2.3e-06 Score=67.06 Aligned_cols=97 Identities=15% Similarity=0.315 Sum_probs=59.9
Q ss_pred ccHHHHHhh-cCCCCcEEEEEEC-------CCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC------cHHHHHH--
Q 022560 191 TGMENLARL-DHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQ-- 254 (295)
Q Consensus 191 ~~f~~~i~~-~~~~k~vvV~Fya-------~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------~~~l~~~-- 254 (295)
++|.++++. ..++++++|+|++ +|||.|+...|.+++.-....+ +..|+.|.+.+- +..+- .
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR-~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFR-TDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHH-H--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCce-Ecc
Confidence 455666653 2456899999996 5999999999999998777655 688888887542 12343 3
Q ss_pred hcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 255 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 255 ~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
+++|+++||++-+..+++ ...-. -.+.+-|..|++
T Consensus 84 ~~~l~~IPTLi~~~~~~r-L~e~e--~~~~~lv~~~~e 118 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGER-LVEEE--CLNEDLVEMFFE 118 (119)
T ss_dssp CC---SSSEEEECTSS-E-EEHHH--HH-HHHHHHHHH
T ss_pred eeeeeecceEEEECCCCc-cchhh--hccHHHHHHHhc
Confidence 599999999999987743 32221 244455555543
No 155
>PRK15000 peroxidase; Provisional
Probab=98.35 E-value=2.8e-06 Score=73.01 Aligned_cols=93 Identities=13% Similarity=0.257 Sum_probs=71.3
Q ss_pred CCCcEEEEEEC-CCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 022560 202 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 253 (295)
Q Consensus 202 ~~k~vvV~Fya-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~ 253 (295)
.++.+||+||+ .||+.|....+.|.+++++|+..++.++.|.+|.. +..++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia- 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ- 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH-
Confidence 47899999999 59999999999999999999876788888877632 12455
Q ss_pred HhcCCC------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHhC
Q 022560 254 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDALR 295 (295)
Q Consensus 254 ~~~~V~------~~Pti~~~~~g~~~~~~~~g---g~~~~e~l~~fi~~l~ 295 (295)
+.|++. .+|+.+++++.+.+...+.+ -.++.+++.+.|+.+|
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 678886 68999999866543332222 1378999999998765
No 156
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2.2e-06 Score=66.04 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=62.7
Q ss_pred ccHHHHHhhcCCCCcEEEEEEC--------CCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC------cHHHHHHhc
Q 022560 191 TGMENLARLDHRQEPWLVVLYA--------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQKL 256 (295)
Q Consensus 191 ~~f~~~i~~~~~~k~vvV~Fya--------~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------~~~l~~~~~ 256 (295)
++|+++++...+++.++|+|++ +|||.|.+..|.+.+.-+.... ++.|+.|++.+- ...+. ...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR-~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFR-KDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccc-cCC
Confidence 5677777766677779999997 7999999999999998886665 799999998653 13444 566
Q ss_pred CC-CCCCeEEEEeCCC
Q 022560 257 QL-GSFPTILFFPKHS 271 (295)
Q Consensus 257 ~V-~~~Pti~~~~~g~ 271 (295)
++ .++||++=++++.
T Consensus 91 ~~lt~vPTLlrw~~~~ 106 (128)
T KOG3425|consen 91 GILTAVPTLLRWKRQP 106 (128)
T ss_pred CceeecceeeEEcCcc
Confidence 66 8999999998643
No 157
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.29 E-value=1.9e-06 Score=71.12 Aligned_cols=79 Identities=18% Similarity=0.409 Sum_probs=53.6
Q ss_pred cCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEEcCCCcHHHHHHhc--------
Q 022560 188 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKL-------- 256 (295)
Q Consensus 188 lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~-------- 256 (295)
.+++.|+..-+ ++|+++|.++++||..|+.|..+. .++++.+.. ++.-++||.++. +++. ..|
T Consensus 25 w~~ea~~~Ak~---e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~-Pdid-~~y~~~~~~~~ 98 (163)
T PF03190_consen 25 WGEEALEKAKK---ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREER-PDID-KIYMNAVQAMS 98 (163)
T ss_dssp SSHHHHHHHHH---HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT--HHHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHh---cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccC-ccHH-HHHHHHHHHhc
Confidence 34455666554 899999999999999999998643 447777766 688899999998 8887 666
Q ss_pred CCCCCCeEEEEeCCCC
Q 022560 257 QLGSFPTILFFPKHSS 272 (295)
Q Consensus 257 ~V~~~Pti~~~~~g~~ 272 (295)
+..++|+.+|+...++
T Consensus 99 ~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 99 GSGGWPLTVFLTPDGK 114 (163)
T ss_dssp S---SSEEEEE-TTS-
T ss_pred CCCCCCceEEECCCCC
Confidence 7889999999987664
No 158
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.28 E-value=7.8e-06 Score=64.06 Aligned_cols=99 Identities=10% Similarity=0.066 Sum_probs=70.8
Q ss_pred cHHHHHhh-cCCCCcEEEEEECC----CChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHhcCCCCCCeEE
Q 022560 192 GMENLARL-DHRQEPWLVVLYAP----WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 192 ~f~~~i~~-~~~~k~vvV~Fya~----wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~V~~~Pti~ 265 (295)
.|.++++. ..+.|.++|+||++ ||..|+.... =.++.+.+.. ++.+...|++..+ ..++ ..+++.++|++.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~-~fv~w~~dv~~~eg~~la-~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT-RMLFWACSVAKPEGYRVS-QALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc-CEEEEEEecCChHHHHHH-HHhCCCCCCEEE
Confidence 45555443 34689999999999 8899965431 1334555555 6899999998653 5688 899999999999
Q ss_pred EEe--CCC-CCeeecCCCCCCHHHHHHHHHHh
Q 022560 266 FFP--KHS-SKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 266 ~~~--~g~-~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
++. +++ ..+....| ..++++|...|..+
T Consensus 82 ~l~~~~~~~~vv~~i~G-~~~~~~ll~~L~~~ 112 (116)
T cd02991 82 MIMLKDNRMTIVGRLEG-LIQPEDLINRLTFI 112 (116)
T ss_pred EEEecCCceEEEEEEeC-CCCHHHHHHHHHHH
Confidence 993 222 22445555 89999999988754
No 159
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.26 E-value=1e-05 Score=71.75 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=69.1
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHhcCCCCCCeEEEEeCCCC
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHSS 272 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------~~~l~~~~~~V~~~Pti~~~~~g~~ 272 (295)
++.-||+||.+.|++|+++.|.+..+++.| ++.+..|++|.. +..++ ++++|..+|+++++..+..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIPGLPNSRSDSGQA-QHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCccCChHHH-HhcCCccCceEEEEECCCC
Confidence 458899999999999999999999999998 466666666643 14577 8999999999999987755
Q ss_pred CeeecCCCCCCHHHHHHHHHH
Q 022560 273 KPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 273 ~~~~~~gg~~~~e~l~~fi~~ 293 (295)
......-|..+.++|.+-|..
T Consensus 226 ~~~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 226 KMSPLAYGFISQDELKERILN 246 (256)
T ss_pred cEEEEeeccCCHHHHHHHHHH
Confidence 444444458999999876643
No 160
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.26 E-value=3e-06 Score=67.70 Aligned_cols=86 Identities=19% Similarity=0.314 Sum_probs=51.6
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhc---CCCCCCeEEEEeCCCCCeeecC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL---QLGSFPTILFFPKHSSKPIKYP 278 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~---~V~~~Pti~~~~~g~~~~~~~~ 278 (295)
..+.-++.|..+|||.|+...|.|.++++..++ +.+-.+..|++ .++. .+| +..++|++++++++.+ .+..-
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd~~-~el~-~~~lt~g~~~IP~~I~~d~~~~-~lg~w 114 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRDEN-KELM-DQYLTNGGRSIPTFIFLDKDGK-ELGRW 114 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HHHH-HHHT-TTTTT-SS--SSEEEEE-TT---EEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEecCC-hhHH-HHHHhCCCeecCEEEEEcCCCC-EeEEE
Confidence 455688889999999999999999999998755 77777777777 6766 544 6789999999977643 45444
Q ss_pred CCCCCHHHHHHHHHHh
Q 022560 279 SERRDVDSLMAFVDAL 294 (295)
Q Consensus 279 gg~~~~e~l~~fi~~l 294 (295)
| --++.+.++++++
T Consensus 115 g--erP~~~~~~~~~~ 128 (129)
T PF14595_consen 115 G--ERPKEVQELVDEY 128 (129)
T ss_dssp E--SS-HHHH------
T ss_pred c--CCCHHHhhccccC
Confidence 4 2445666666554
No 161
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.24 E-value=4.8e-06 Score=67.21 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=55.2
Q ss_pred CCCcEEEEEECCC-ChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------c-HHHHHHhcCC
Q 022560 202 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------Q-KEYAKQKLQL 258 (295)
Q Consensus 202 ~~k~vvV~Fya~w-C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------~-~~l~~~~~~V 258 (295)
.+|++||+||+.| |++|+...|.|.++.+++++ +.|+.|+.+.. . ..+. +.|++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~~~gv 101 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN--TVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFG-KAYGV 101 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC--CEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHH-HHhCC
Confidence 4789999999999 69999999999999999854 88888887532 1 3455 67777
Q ss_pred CC------CCeEEEEeCCCCCeeec
Q 022560 259 GS------FPTILFFPKHSSKPIKY 277 (295)
Q Consensus 259 ~~------~Pti~~~~~g~~~~~~~ 277 (295)
.. .|+.++++..+.+....
T Consensus 102 ~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 102 LIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred eeccCCccceEEEEEcCCCeEEEEE
Confidence 53 68999997555433333
No 162
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.20 E-value=1.5e-05 Score=71.12 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=70.2
Q ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 022560 202 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 253 (295)
Q Consensus 202 ~~k~vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~ 253 (295)
.++.+|+.|| ++||++|....+.|.++.+++.+.++.++.|.+|.. +..++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia- 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS- 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH-
Confidence 4667888888 899999999999999999999876688888776641 13567
Q ss_pred HhcCCC-----CCCeEEEEeCCCCCeeec---CCCCCCHHHHHHHHHHhC
Q 022560 254 QKLQLG-----SFPTILFFPKHSSKPIKY---PSERRDVDSLMAFVDALR 295 (295)
Q Consensus 254 ~~~~V~-----~~Pti~~~~~g~~~~~~~---~gg~~~~e~l~~fi~~l~ 295 (295)
+.|++. ..|+.+++++.+.+...+ ....++.+++...|+.+|
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 788885 589999998555433222 112479999999998775
No 163
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.20 E-value=4.2e-06 Score=60.96 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=44.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcH----HHHHHhcCCCCCCeEEEEeCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~----~l~~~~~~V~~~Pti~~~~~g~ 271 (295)
|+.|+++||++|+.+.+.+.++. ... .+.++.||.+.+.. .+. +.+++.++|+++ -+|.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~-~~~g~~~vP~v~--i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLE-EITGQRTVPNIF--INGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHH-HHhCCCCCCeEE--ECCE
Confidence 57899999999999999999876 332 47788888765522 244 667999999983 3554
No 164
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.18 E-value=1.9e-05 Score=69.76 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=67.1
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHhcCCCCCCeEEEEeCCCC
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHSS 272 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------~~~l~~~~~~V~~~Pti~~~~~g~~ 272 (295)
++.-|++||.+.|++|.++.|.+..+++.|. +.+..|++|.. +...+ ++++|..+|++++++.+..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVINPLLPDSRTDQGQA-QRLGVKYFPALMLVDPKSG 218 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCCccChhHH-HhcCCcccceEEEEECCCC
Confidence 4578999999999999999999999999984 56665555531 13466 7899999999999987764
Q ss_pred CeeecCCCCCCHHHHHHHHHH
Q 022560 273 KPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 273 ~~~~~~gg~~~~e~l~~fi~~ 293 (295)
......-|..+.++|.+-|..
T Consensus 219 ~~~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 219 SVRPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred cEEEEeeccCCHHHHHHHHHH
Confidence 444444357999999876653
No 165
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.17 E-value=7.9e-05 Score=58.04 Aligned_cols=105 Identities=19% Similarity=0.339 Sum_probs=79.8
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHH-HHhcC-CCeEEEEEEcCCC----cHHHHHHhc
Q 022560 183 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELA-DKLAG-NGVKVGKFRADGD----QKEYAKQKL 256 (295)
Q Consensus 183 ~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la-~~~~~-~~v~~~~vd~~~~----~~~l~~~~~ 256 (295)
...+.|+.-+|++++. +.+.++|.|=... |--.-...|.++| +.... ..+-++.|-+.+. +.+|+ ++|
T Consensus 4 ~G~v~LD~~tFdKvi~---kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~La-ery 77 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIP---KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELA-ERY 77 (126)
T ss_dssp TTSEEESTTHHHHHGG---GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHH-HHT
T ss_pred Cceeeccceehhheec---cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHH-HHh
Confidence 3467899999999997 7899999998655 3334567888888 44433 5799999987542 48999 999
Q ss_pred CC--CCCCeEEEEeCCCCCeeec--CCCCCCHHHHHHHHHHh
Q 022560 257 QL--GSFPTILFFPKHSSKPIKY--PSERRDVDSLMAFVDAL 294 (295)
Q Consensus 257 ~V--~~~Pti~~~~~g~~~~~~~--~gg~~~~e~l~~fi~~l 294 (295)
+| ..+|.+++|..+...++.| .+ ..+.++|..|+.+.
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~-~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDG-DVTADNLQRFVKSN 118 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS--S-HHHHHHHHHHT
T ss_pred CCCcccCCEEEEecCCCCCCccCCccC-CccHHHHHHHHHhC
Confidence 99 6799999999777778888 66 79999999999863
No 166
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2e-05 Score=70.50 Aligned_cols=112 Identities=16% Similarity=0.289 Sum_probs=89.3
Q ss_pred CCCCceecCcccHHHHHhhcCCCCcEEEEEEC----CCChhHHHHHHHHHHHHHHhcC-------CCeEEEEEEcCCCcH
Q 022560 181 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYA----PWCQFCQAMEGSYVELADKLAG-------NGVKVGKFRADGDQK 249 (295)
Q Consensus 181 ~~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya----~wC~~C~~~~p~~~~la~~~~~-------~~v~~~~vd~~~~~~ 249 (295)
....|+.+++++|..++....++-.++|+|.| ..|.-|+.+..++.-++..+.. .++-|..||.++. +
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-p 116 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-P 116 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-H
Confidence 45779999999999999866667789999998 4599999999999999988754 2689999999998 9
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCCCe---eecCCC--CCCHHHHHHHHHHh
Q 022560 250 EYAKQKLQLGSFPTILFFPKHSSKP---IKYPSE--RRDVDSLMAFVDAL 294 (295)
Q Consensus 250 ~l~~~~~~V~~~Pti~~~~~g~~~~---~~~~gg--~~~~e~l~~fi~~l 294 (295)
++. +.+++..+|++++|.+.+... ..+... ...+|++.+|++..
T Consensus 117 ~~F-q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 117 QVF-QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred HHH-HHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 999 999999999999996543211 111111 24589999999753
No 167
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.16 E-value=1.1e-05 Score=64.62 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=57.7
Q ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------cHHHHHHhcCCC
Q 022560 202 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------QKEYAKQKLQLG 259 (295)
Q Consensus 202 ~~k~vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------~~~l~~~~~~V~ 259 (295)
.+++++|.|| +.||+.|....+.+.++.++++..++.|+.|..+.. +..+. +.|++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~g~~ 99 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFA-KAYGVL 99 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHH-HHcCCc
Confidence 5789999999 789999999999999999998655788888876542 13455 677777
Q ss_pred CCC---------eEEEEeCCCCCeeecCC
Q 022560 260 SFP---------TILFFPKHSSKPIKYPS 279 (295)
Q Consensus 260 ~~P---------ti~~~~~g~~~~~~~~g 279 (295)
..| +++++++.+.+...+.|
T Consensus 100 ~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 100 IEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred cccccccCceeEEEEEECCCCcEEEEEec
Confidence 665 77888765544444444
No 168
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.16 E-value=1.6e-05 Score=68.51 Aligned_cols=90 Identities=20% Similarity=0.284 Sum_probs=65.8
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHHhcCC
Q 022560 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQKLQL 258 (295)
Q Consensus 205 ~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~~~~V 258 (295)
.+|+.|+++||+.|....+.|.++++++++.++.++.|+++.. +..++ +.|++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia-~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVA-KLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHH-HHcCC
Confidence 4566889999999999999999999999876788888887642 13566 78887
Q ss_pred C----C----CCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHhC
Q 022560 259 G----S----FPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDALR 295 (295)
Q Consensus 259 ~----~----~Pti~~~~~g~~~~~~~~g---g~~~~e~l~~fi~~l~ 295 (295)
. + +|+++++++.+.+...+.+ ..++.++|.+.|+++|
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 5 2 3468888765543322222 1368899999998764
No 169
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.09 E-value=2.4e-05 Score=68.04 Aligned_cols=93 Identities=11% Similarity=0.214 Sum_probs=67.8
Q ss_pred CCCcEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------------HHHHHH
Q 022560 202 RQEPWL-VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------------KEYAKQ 254 (295)
Q Consensus 202 ~~k~vv-V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------------~~l~~~ 254 (295)
.++.+| +.|+++||+.|....+.|.+++.+|+..++.++.|++|... ..++ +
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia-~ 110 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA-K 110 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH-H
Confidence 356555 47889999999999999999999998767888888876431 2455 6
Q ss_pred hcCCC-------CCCeEEEEeCCCCCeeec--C-CCCCCHHHHHHHHHHhC
Q 022560 255 KLQLG-------SFPTILFFPKHSSKPIKY--P-SERRDVDSLMAFVDALR 295 (295)
Q Consensus 255 ~~~V~-------~~Pti~~~~~g~~~~~~~--~-gg~~~~e~l~~fi~~l~ 295 (295)
.|++. .+|++++++..+.+...+ . .-.++.+++...|+.+|
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 77763 478999998666432221 1 11379999999998775
No 170
>PRK13189 peroxiredoxin; Provisional
Probab=98.08 E-value=2.3e-05 Score=68.43 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=67.1
Q ss_pred CCC-cEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHH
Q 022560 202 RQE-PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQ 254 (295)
Q Consensus 202 ~~k-~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~ 254 (295)
.++ .+|+.|+++||+.|....+.|.+++++|++.++.++.|.++.. +..++ +
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia-~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA-K 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH-H
Confidence 356 4455778999999999999999999999876788888876642 13556 6
Q ss_pred hcCCC-------CCCeEEEEeCCCCCeeecC---CCCCCHHHHHHHHHHhC
Q 022560 255 KLQLG-------SFPTILFFPKHSSKPIKYP---SERRDVDSLMAFVDALR 295 (295)
Q Consensus 255 ~~~V~-------~~Pti~~~~~g~~~~~~~~---gg~~~~e~l~~fi~~l~ 295 (295)
.|++. .+|++++++..+.+..... ...++.+++...|+.++
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 78865 4689999986654221211 11478899999998764
No 171
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.08 E-value=5.7e-05 Score=58.70 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=77.6
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHH---hcCCCeEEEEEEcCCCcHHHHHHhcCCCC-
Q 022560 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADK---LAGNGVKVGKFRADGDQKEYAKQKLQLGS- 260 (295)
Q Consensus 185 v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~---~~~~~v~~~~vd~~~~~~~l~~~~~~V~~- 260 (295)
|.++|.+++..+.. ++.+..+.|+.+ ..-..+...+.++|+. +++ ++.|+.+|.++. .... +.||++.
T Consensus 1 ~~e~t~e~~~~~~~---~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~-~~~~-~~fgl~~~ 72 (111)
T cd03072 1 VREITFENAEELTE---EGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG-AINFLTADGDKF-RHPL-LHLGKTPA 72 (111)
T ss_pred CcccccccHHHHhc---CCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHh-hhHH-HHcCCCHh
Confidence 45678888887775 666666667722 2346788899999999 988 799999999998 5577 8999987
Q ss_pred -CCeEEEEeCCCCCeee-cCCCCCCHHHHHHHHHHh
Q 022560 261 -FPTILFFPKHSSKPIK-YPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 261 -~Pti~~~~~g~~~~~~-~~gg~~~~e~l~~fi~~l 294 (295)
+|.+.+.......... +.+ ..+.++|.+|++++
T Consensus 73 ~~P~i~i~~~~~~~Ky~~~~~-~~t~~~i~~Fv~~~ 107 (111)
T cd03072 73 DLPVIAIDSFRHMYLFPDFED-VYVPGKLKQFVLDL 107 (111)
T ss_pred HCCEEEEEcchhcCcCCCCcc-ccCHHHHHHHHHHH
Confidence 9999999765422333 334 78999999999875
No 172
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.06 E-value=1.7e-05 Score=63.71 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=39.3
Q ss_pred CCCcEEEEEECCCChh-HHHHHHHHHHHHHHhcCC---CeEEEEEEcCC
Q 022560 202 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAGN---GVKVGKFRADG 246 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~-C~~~~p~~~~la~~~~~~---~v~~~~vd~~~ 246 (295)
.++++||.||++||++ |....+.+.++.+.+++. ++.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5789999999999998 999999999999999763 48888888753
No 173
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.06 E-value=3e-05 Score=67.38 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=68.8
Q ss_pred CCc-EEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHHh
Q 022560 203 QEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQK 255 (295)
Q Consensus 203 ~k~-vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~~ 255 (295)
++. ||+.|+++||+.|....+.|.+++.+|...++.++.|+++.. +..++ +.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va-~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS-NQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH-HH
Confidence 554 567899999999999999999999999776788888887652 13456 67
Q ss_pred cCCC-------CCCeEEEEeCCCCCeee--cCC-CCCCHHHHHHHHHHhC
Q 022560 256 LQLG-------SFPTILFFPKHSSKPIK--YPS-ERRDVDSLMAFVDALR 295 (295)
Q Consensus 256 ~~V~-------~~Pti~~~~~g~~~~~~--~~g-g~~~~e~l~~fi~~l~ 295 (295)
|++. .+|++++++..+.+... |.. ..++.++|.+.|+++|
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq 156 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ 156 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 8873 68999999865543222 111 1378999999998875
No 174
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=8.3e-05 Score=57.91 Aligned_cols=99 Identities=12% Similarity=0.225 Sum_probs=78.2
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCC
Q 022560 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 270 (295)
Q Consensus 191 ~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g 270 (295)
...+..+. ....+.|+|-|.-+|-+.|..|...+.++++...+ -..+.-+|+++- +++. +-|++...||+++|-++
T Consensus 12 ~~VdqaI~-~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV-~~~~-~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 12 WEVDQAIL-STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEV-PDFV-KMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHHh-cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchh-hhhh-hhhcccCCceEEEEEcC
Confidence 44555553 34678999999999999999999999999999988 577788899988 8998 99999999999999887
Q ss_pred CCCeeecCCC--------CCCHHHHHHHHHH
Q 022560 271 SSKPIKYPSE--------RRDVDSLMAFVDA 293 (295)
Q Consensus 271 ~~~~~~~~gg--------~~~~e~l~~fi~~ 293 (295)
+-..+.+..| ..+.+++++.|+.
T Consensus 88 kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 88 KHMKIDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred ceEEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 7433443322 3466777777764
No 175
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.04 E-value=4.6e-05 Score=54.95 Aligned_cols=74 Identities=18% Similarity=0.408 Sum_probs=53.8
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHH
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 287 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l 287 (295)
|.+++++|+.|..+...+++++..+ + +.+-.+|..+. .-. .+|+|.++|++++ +|+ +.+.|...+.++|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~--i~~ei~~~~~~--~~~-~~ygv~~vPalvI--ng~---~~~~G~~p~~~el 71 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G--IEVEIIDIEDF--EEI-EKYGVMSVPALVI--NGK---VVFVGRVPSKEEL 71 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T--EEEEEEETTTH--HHH-HHTT-SSSSEEEE--TTE---EEEESS--HHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C--CeEEEEEccCH--HHH-HHcCCCCCCEEEE--CCE---EEEEecCCCHHHH
Confidence 3447888999999999999998888 3 66666676443 445 7999999999944 554 5566645788899
Q ss_pred HHHHH
Q 022560 288 MAFVD 292 (295)
Q Consensus 288 ~~fi~ 292 (295)
.++|+
T Consensus 72 ~~~l~ 76 (76)
T PF13192_consen 72 KELLE 76 (76)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 88874
No 176
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.96 E-value=0.00014 Score=54.44 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=68.9
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCC
Q 022560 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 270 (295)
Q Consensus 191 ~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g 270 (295)
++++.++. .++++||-|+.+++. .....|.++|+.+.+ .+.|+.++ + .++. +++.+. .|++++|++.
T Consensus 8 ~~l~~~~~---~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~-~~~~-~~~~~~-~~~i~l~~~~ 74 (97)
T cd02981 8 EELEKFLD---KDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---D-KEVA-KKLKVK-PGSVVLFKPF 74 (97)
T ss_pred HHHHHHhc---cCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---h-HHHH-HHcCCC-CCceEEeCCc
Confidence 44555554 788999999999977 467799999999976 58887776 3 5677 677765 5999999875
Q ss_pred CCCeeecCCCCCCHHHHHHHHHH
Q 022560 271 SSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 271 ~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
......|.| ..+.++|.+||..
T Consensus 75 ~~~~~~y~g-~~~~~~l~~fi~~ 96 (97)
T cd02981 75 EEEPVEYDG-EFTEESLVEFIKD 96 (97)
T ss_pred ccCCccCCC-CCCHHHHHHHHHh
Confidence 444677888 6789999999964
No 177
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.95 E-value=0.00028 Score=56.39 Aligned_cols=106 Identities=14% Similarity=0.231 Sum_probs=76.9
Q ss_pred CCceecCcccH-HHHHhhcCCCCcEEEEEECC--CChh-H-HHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcC
Q 022560 183 QNLVTLNRTGM-ENLARLDHRQEPWLVVLYAP--WCQF-C-QAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ 257 (295)
Q Consensus 183 ~~v~~lt~~~f-~~~i~~~~~~k~vvV~Fya~--wC~~-C-~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~ 257 (295)
..|++|++.++ ++.-. .++..+|.|.-. -|.. + ..+...+.++|+.|+++.+.|+.+|.++. ..+. +.|+
T Consensus 2 ~~~~~l~~~~~~~~~C~---~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~-~~~~-~~fg 76 (130)
T cd02983 2 PEIIELTSEDVFEETCE---EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ-LDLE-EALN 76 (130)
T ss_pred CceEEecCHHHHHhhcc---CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc-HHHH-HHcC
Confidence 35788887665 43332 356666666432 1322 2 45688899999999994499999999998 7788 9999
Q ss_pred CC--CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 258 LG--SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 258 V~--~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
|. .+|++++++..+.+...+.| ..+.++|.+|++++
T Consensus 77 l~~~~~P~v~i~~~~~~KY~~~~~-~~t~e~i~~Fv~~~ 114 (130)
T cd02983 77 IGGFGYPAMVAINFRKMKFATLKG-SFSEDGINEFLREL 114 (130)
T ss_pred CCccCCCEEEEEecccCccccccC-ccCHHHHHHHHHHH
Confidence 95 59999999876532222555 79999999999875
No 178
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.92 E-value=7.7e-05 Score=64.00 Aligned_cols=93 Identities=10% Similarity=0.193 Sum_probs=68.6
Q ss_pred CCCcEEEEEEC-CCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 022560 202 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 253 (295)
Q Consensus 202 ~~k~vvV~Fya-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~ 253 (295)
.++.++|+||+ +||+.|....+.|.++++++...++.++.|+++.. +.+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia- 113 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA- 113 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH-
Confidence 46789999995 88999999999999999999877788888887643 13466
Q ss_pred HhcCCC------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHhC
Q 022560 254 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDALR 295 (295)
Q Consensus 254 ~~~~V~------~~Pti~~~~~g~~~~~~~~g---g~~~~e~l~~fi~~l~ 295 (295)
+.|++. .+|+.+++++.+.+.....+ ..++.+++.+.|+.++
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 778875 46899999866642222111 1468888888887654
No 179
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.5e-05 Score=68.26 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=62.5
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSS 272 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~ 272 (295)
+++..+++|||+||.+|+++...++.+++..+ ++.|++++.++. ++++ ..+.+..+|++.++..|..
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~-~eis-~~~~v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEF-PEIS-NLIAVEAVPYFVFFFLGEK 82 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhh-hHHH-HHHHHhcCceeeeeecchh
Confidence 78899999999999999999999999999994 599999999999 9999 9999999999999987764
No 180
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.87 E-value=8.3e-05 Score=52.09 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=46.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HhcCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHSSKPIKYPSERRD 283 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~ 283 (295)
++.|+++||++|+.+...+.+. ++.+..+|++.. ..... +..++..+|++++ +|+ ...| .+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~i~~--~~~----~i~g--~~ 65 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------GIPFEEVDVDED-PEALEELKKLNGYRSVPVVVI--GDE----HLSG--FR 65 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------CCCeEEEeCCCC-HHHHHHHHHHcCCcccCEEEE--CCE----EEec--CC
Confidence 6789999999999988877652 477777888765 44330 2236889999976 332 2223 56
Q ss_pred HHHHHHHH
Q 022560 284 VDSLMAFV 291 (295)
Q Consensus 284 ~e~l~~fi 291 (295)
.+.|.++|
T Consensus 66 ~~~l~~~~ 73 (73)
T cd02976 66 PDKLRALL 73 (73)
T ss_pred HHHHHhhC
Confidence 66776653
No 181
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.86 E-value=5.6e-05 Score=55.61 Aligned_cols=75 Identities=12% Similarity=0.302 Sum_probs=53.7
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcC--CCCCCeEEEEeCCCCCeeecCCC
Q 022560 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQ--LGSFPTILFFPKHSSKPIKYPSE 280 (295)
Q Consensus 206 vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~--V~~~Pti~~~~~g~~~~~~~~gg 280 (295)
-|+.|+.+||++|+.....|+++...+.+ +.+..+|++.+. .++. ...+ +.++|+++ .+|+ . .|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~--i~~~~idi~~~~~~~~el~-~~~~~~~~~vP~if--i~g~--~---ig- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD--FDYRYVDIHAEGISKADLE-KTVGKPVETVPQIF--VDQK--H---IG- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC--CcEEEEECCCChHHHHHHH-HHHCCCCCcCCEEE--ECCE--E---Ec-
Confidence 37889999999999999999999877644 888899988651 2444 4344 57899975 3565 2 23
Q ss_pred CCCHHHHHHHHHH
Q 022560 281 RRDVDSLMAFVDA 293 (295)
Q Consensus 281 ~~~~e~l~~fi~~ 293 (295)
..++|.++++.
T Consensus 71 --g~~~~~~~~~~ 81 (85)
T PRK11200 71 --GCTDFEAYVKE 81 (85)
T ss_pred --CHHHHHHHHHH
Confidence 24666666653
No 182
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.85 E-value=2.7e-05 Score=65.94 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=39.0
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 245 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~ 245 (295)
++++|||.|||+||++|++ .+.|+++.+.|++.++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 5799999999999999975 889999999998778999999885
No 183
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.84 E-value=0.00026 Score=54.95 Aligned_cols=99 Identities=11% Similarity=0.148 Sum_probs=71.2
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEE----CCCChhHHHHHHHHHHHHHHhc-CCCeEEEEEEcCCCcHHHHHHhcCCCC
Q 022560 186 VTLNRTGMENLARLDHRQEPWLVVLY----APWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGS 260 (295)
Q Consensus 186 ~~lt~~~f~~~i~~~~~~k~vvV~Fy----a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~~~l~~~~~~V~~ 260 (295)
-++|.++..... ..+.+|.|| +..=..-..+...+.++|+.++ + ++.|+.+|.++. .... +.|++..
T Consensus 2 ~~~~~en~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~-~~~l-~~fgl~~ 73 (111)
T cd03073 2 GHRTKDNRAQFT-----KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDF-SHEL-EEFGLDF 73 (111)
T ss_pred CeeccchHHHhc-----cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHH-HHHH-HHcCCCc
Confidence 346677776654 233344443 2233445678899999999999 6 699999999988 5677 8999974
Q ss_pred ----CCeEEEEeCCCCCeeecCCCCC-CHHHHHHHHHHh
Q 022560 261 ----FPTILFFPKHSSKPIKYPSERR-DVDSLMAFVDAL 294 (295)
Q Consensus 261 ----~Pti~~~~~g~~~~~~~~gg~~-~~e~l~~fi~~l 294 (295)
+|++.++..... .....+ .. +.++|.+|+++.
T Consensus 74 ~~~~~P~~~i~~~~~~-KY~~~~-~~~t~e~i~~F~~~f 110 (111)
T cd03073 74 SGGEKPVVAIRTAKGK-KYVMEE-EFSDVDALEEFLEDF 110 (111)
T ss_pred ccCCCCEEEEEeCCCC-ccCCCc-ccCCHHHHHHHHHHh
Confidence 999999975432 333444 57 999999999875
No 184
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.79 E-value=0.00014 Score=63.94 Aligned_cols=82 Identities=13% Similarity=0.327 Sum_probs=60.2
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEE--------------------------------------
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR-------------------------------------- 243 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd-------------------------------------- 243 (295)
.++.+|+.|.-+.||+|+++.+.+.++.+. ++.+..+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 467889999999999999999998876431 23332221
Q ss_pred ------cCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 022560 244 ------ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 295 (295)
Q Consensus 244 ------~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l~ 295 (295)
++++ ..++ ++++|+++||++ |.+|. .+ .| ..+.++|.++|++.|
T Consensus 182 ~~c~~~v~~~-~~la-~~lgi~gTPtiv-~~~G~--~~--~G-~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 182 ASCDVDIADH-YALG-VQFGVQGTPAIV-LSNGT--LV--PG-YQGPKEMKAFLDEHQ 231 (232)
T ss_pred ccccchHHHh-HHHH-HHcCCccccEEE-EcCCe--Ee--eC-CCCHHHHHHHHHHcc
Confidence 1122 5678 899999999999 66776 22 45 789999999998764
No 185
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.71 E-value=0.00028 Score=59.42 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=85.5
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCC
Q 022560 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 261 (295)
Q Consensus 182 ~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~ 261 (295)
-+.|..++..+|..-+..+..+--|||..|...-+-|.-+...|+.++..|.. ++|+++=.... . ..|.=...
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~c----I-pNYPe~nl 162 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTC----I-PNYPESNL 162 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccc----c-CCCcccCC
Confidence 36789999999988888777888999999999999999999999999999998 99998876655 2 45666789
Q ss_pred CeEEEEeCCCC-----CeeecCCCCCCHHHHHHHHHH
Q 022560 262 PTILFFPKHSS-----KPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 262 Pti~~~~~g~~-----~~~~~~gg~~~~e~l~~fi~~ 293 (295)
||+++|..|.. .+..+.|...+.+++..++-+
T Consensus 163 PTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 163 PTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred CeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 99999998852 133444546788998888754
No 186
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.71 E-value=0.00021 Score=70.76 Aligned_cols=79 Identities=11% Similarity=0.254 Sum_probs=65.6
Q ss_pred CCcE-EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCC
Q 022560 203 QEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 281 (295)
Q Consensus 203 ~k~v-vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~ 281 (295)
++++ |-.|.+++|++|......+++++....+ |..-.||.... ++++ ++|+|.++|++++ +|+ ..+.| .
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~--i~~~~i~~~~~-~~~~-~~~~v~~vP~~~i--~~~---~~~~G-~ 544 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN--VEAEMIDVSHF-PDLK-DEYGIMSVPAIVV--DDQ---QVYFG-K 544 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC--ceEEEEECccc-HHHH-HhCCceecCEEEE--CCE---EEEee-C
Confidence 4565 4556899999999999999999988765 99999999999 9999 9999999999987 444 33556 6
Q ss_pred CCHHHHHHHH
Q 022560 282 RDVDSLMAFV 291 (295)
Q Consensus 282 ~~~e~l~~fi 291 (295)
.+.++|.++|
T Consensus 545 ~~~~~~~~~~ 554 (555)
T TIGR03143 545 KTIEEMLELI 554 (555)
T ss_pred CCHHHHHHhh
Confidence 7999998876
No 187
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.67 E-value=0.00088 Score=52.89 Aligned_cols=98 Identities=12% Similarity=0.232 Sum_probs=72.1
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe-EEEEeC
Q 022560 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT-ILFFPK 269 (295)
Q Consensus 191 ~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt-i~~~~~ 269 (295)
...++++. ...++.|+|-|..+|-+.|.++-..+.++++..+. -..+..||.++- +++. +-|.+. -|. ++||-+
T Consensus 9 ~~VDqAI~-~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~V-pdfn-~~yel~-dP~tvmFF~r 83 (133)
T PF02966_consen 9 WHVDQAIL-SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEV-PDFN-QMYELY-DPCTVMFFFR 83 (133)
T ss_dssp HHHHHHHH-H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTT-HCCH-HHTTS--SSEEEEEEET
T ss_pred chHHHHHh-ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccc-hhhh-cccccC-CCeEEEEEec
Confidence 45566654 35689999999999999999999999999999988 688899999998 8888 899999 565 555646
Q ss_pred CCCCeeecC--------CCCCCHHHHHHHHHH
Q 022560 270 HSSKPIKYP--------SERRDVDSLMAFVDA 293 (295)
Q Consensus 270 g~~~~~~~~--------gg~~~~e~l~~fi~~ 293 (295)
++-..+.+. +...+.++|++.++.
T Consensus 84 nkhm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 84 NKHMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp TEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred CeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 553333332 223567888887764
No 188
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.67 E-value=0.00031 Score=69.00 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=72.9
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeE
Q 022560 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264 (295)
Q Consensus 185 v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti 264 (295)
-..|+++..+.+.. + .+..-|..|+++.|++|......+++++...+ +|.+-.||.... ++++ .+|+|.++|++
T Consensus 100 ~~~l~~~~~~~i~~-~-~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~-~~~~-~~~~v~~VP~~ 173 (517)
T PRK15317 100 PPKLDQEVIEQIKA-L-DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALF-QDEV-EARNIMAVPTV 173 (517)
T ss_pred CCCCCHHHHHHHHh-c-CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhC-HhHH-HhcCCcccCEE
Confidence 34455555444432 1 23345888999999999999999999998755 499999999999 9999 99999999999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 022560 265 LFFPKHSSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 265 ~~~~~g~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
++ +++ ..+.| ..+.++|.+.+.+
T Consensus 174 ~i--~~~---~~~~g-~~~~~~~~~~~~~ 196 (517)
T PRK15317 174 FL--NGE---EFGQG-RMTLEEILAKLDT 196 (517)
T ss_pred EE--CCc---EEEec-CCCHHHHHHHHhc
Confidence 75 444 23455 6777888777653
No 189
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.59 E-value=0.00021 Score=60.77 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=82.9
Q ss_pred CCceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCC
Q 022560 183 QNLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 261 (295)
Q Consensus 183 ~~v~~lt-~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~ 261 (295)
..|++++ .++|-+.+...-+.-.++|+.|-+--+-|..+...+.-||..|+- ++|++|-.... ... .+|...++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~--vKFckikss~~--gas-~~F~~n~l 212 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI--VKFCKIKSSNT--GAS-DRFSLNVL 212 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc--eeEEEeeeccc--cch-hhhcccCC
Confidence 3578885 478888886333445789999999999999999999999999987 99999986654 445 78999999
Q ss_pred CeEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHH
Q 022560 262 PTILFFPKHSSK-----PIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 262 Pti~~~~~g~~~-----~~~~~gg~~~~e~l~~fi~~ 293 (295)
||+++|++|.-+ +....|..+...+|.+||+.
T Consensus 213 P~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 213 PTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred ceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 999999999731 22233445777888888875
No 190
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.54 E-value=0.00049 Score=46.92 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=40.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcCCCCCCeEEE
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~V~~~Pti~~ 266 (295)
|+.|..++|++|+..+..|++. ++.+-.+|++... .++. +..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-------~i~y~~~dv~~~~~~~~~l~-~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-------GIPYEEVDVDEDEEAREELK-ELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-------TBEEEEEEGGGSHHHHHHHH-HHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-------CCeeeEcccccchhHHHHHH-HHcCCCccCEEEE
Confidence 5789999999999988888432 5888889988871 2233 3449999999986
No 191
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.51 E-value=0.00029 Score=52.05 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=51.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcC--CCCCCeEEEEeCCCCCeeecCCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQ--LGSFPTILFFPKHSSKPIKYPSER 281 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~--V~~~Pti~~~~~g~~~~~~~~gg~ 281 (295)
|+.|..+||++|.+++..|+++...+.+ +.+..+|++... .++. ...+ +.++|++++ +|+ +.||
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~--i~~~~idi~~~~~~~~~l~-~~~g~~~~tVP~ifi--~g~-----~igG- 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD--FEFRYIDIHAEGISKADLE-KTVGKPVETVPQIFV--DEK-----HVGG- 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC--CcEEEEECCCCHHHHHHHH-HHhCCCCCCcCeEEE--CCE-----EecC-
Confidence 6789999999999999999887755544 778888887531 2454 5555 379999943 454 2342
Q ss_pred CCHHHHHHHHHH
Q 022560 282 RDVDSLMAFVDA 293 (295)
Q Consensus 282 ~~~e~l~~fi~~ 293 (295)
.++|.+++++
T Consensus 71 --~~dl~~~~~~ 80 (86)
T TIGR02183 71 --CTDFEQLVKE 80 (86)
T ss_pred --HHHHHHHHHh
Confidence 3677777654
No 192
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.48 E-value=0.0004 Score=50.21 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=41.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcH----HHHHHhcCCCCCCeEEEEeCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~----~l~~~~~~V~~~Pti~~~~~g~ 271 (295)
|+.|+++|||+|+.+.+.+.++.. .+.++.++.+.+.. .+. +..++.++|++ |.+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~-~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQ-ELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHH-HHhCCCCCCeE--EECCE
Confidence 578999999999999999988654 25677777765421 333 55688899997 44554
No 193
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.37 E-value=0.00059 Score=58.33 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=53.7
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEE----------------------------------------
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK---------------------------------------- 241 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~---------------------------------------- 241 (295)
..+..|+.|..+.|++|+.+.+.+.+. .+ ++.+..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 357899999999999999999988751 11 122221
Q ss_pred -----EEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 242 -----FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 242 -----vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
.+++++ ..++ ++++|.++|+++ |.+|. . ..| ..+.++|.++|
T Consensus 151 ~~~~~~~i~~~-~~l~-~~~gi~gtPtii-~~~G~--~--~~G-~~~~~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAAN-LALG-RQLGVNGTPTIV-LADGR--V--VPG-APPAAQLEALL 197 (197)
T ss_pred ccccCchHHHH-HHHH-HHcCCCcccEEE-ECCCe--E--ecC-CCCHHHHHhhC
Confidence 122222 5677 899999999997 77776 2 345 67788887764
No 194
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.34 E-value=0.0016 Score=63.97 Aligned_cols=95 Identities=12% Similarity=0.137 Sum_probs=71.8
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEE
Q 022560 186 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 186 ~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~ 265 (295)
..|+++..+.+.. + .+..-|..|+++.|++|......+++++....+ |..-.+|.... ++++ .+|+|.++|+++
T Consensus 102 ~~l~~~~~~~~~~-~-~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~--i~~~~id~~~~-~~~~-~~~~v~~VP~~~ 175 (515)
T TIGR03140 102 PKLDEGIIDRIRR-L-NGPLHFETYVSLTCQNCPDVVQALNQMALLNPN--ISHTMIDGALF-QDEV-EALGIQGVPAVF 175 (515)
T ss_pred CCCCHHHHHHHHh-c-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC--ceEEEEEchhC-HHHH-HhcCCcccCEEE
Confidence 4465555554433 1 234458889999999999999999999888665 88888999999 9999 999999999997
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 266 FFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 266 ~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
+ +++ ..+.| ..+.++|.+.+.
T Consensus 176 i--~~~---~~~~g-~~~~~~~~~~l~ 196 (515)
T TIGR03140 176 L--NGE---EFHNG-RMDLAELLEKLE 196 (515)
T ss_pred E--CCc---EEEec-CCCHHHHHHHHh
Confidence 6 444 23445 677777766654
No 195
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.27 E-value=0.0023 Score=48.96 Aligned_cols=81 Identities=9% Similarity=0.208 Sum_probs=58.6
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcCCC-CCCeE
Q 022560 189 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLG-SFPTI 264 (295)
Q Consensus 189 t~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~V~-~~Pti 264 (295)
+.++++++++ ...+++++|+=.++.|+-.......|++......+ .+.++.+|+-+.. ..++ .+|+|+ .-|.+
T Consensus 6 t~eql~~i~~-~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~R~vSn~IA-e~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILE-ESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEYRPVSNAIA-EDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHH-H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHH-HHHT----SSEE
T ss_pred CHHHHHHHHH-hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeCchhHHHHH-HHhCCCcCCCcE
Confidence 4578888876 34578999999999999999999999999888877 5999999998871 3566 789995 78999
Q ss_pred EEEeCCCC
Q 022560 265 LFFPKHSS 272 (295)
Q Consensus 265 ~~~~~g~~ 272 (295)
+++++|+.
T Consensus 83 ili~~g~~ 90 (105)
T PF11009_consen 83 ILIKNGKV 90 (105)
T ss_dssp EEEETTEE
T ss_pred EEEECCEE
Confidence 99999984
No 196
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.21 E-value=0.0017 Score=44.99 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=39.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHhcCCCCCCeEEEEeCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~---~~~~~V~~~Pti~~~~~g~ 271 (295)
++.|+++||++|+.+...|.+. ++.+..+|++++ .+.. .+..+...+|+++ .+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDILED-GELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECCCC-HHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 6789999999999999888765 367778888876 3322 0345677888774 3554
No 197
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.19 E-value=0.0061 Score=49.70 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=61.9
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHh--cCCCeEEEEEEcCCCc-------------------------------
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKL--AGNGVKVGKFRADGDQ------------------------------- 248 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~--~~~~v~~~~vd~~~~~------------------------------- 248 (295)
..+.+|+.|+..-|++|+.+.+.+.++.+.+ .+ .|.|..+++....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999998 44 7888877652110
Q ss_pred ------------------------------------HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 249 ------------------------------------KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 249 ------------------------------------~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
...+ .+++|.++||+++ +|+ . +.+ ..+.++|.++|+
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~tPt~~i--nG~--~--~~~-~~~~~~l~~~Id 161 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLA-RQLGITGTPTFFI--NGK--Y--VVG-PYTIEELKELID 161 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHH-HHHT-SSSSEEEE--TTC--E--EET-TTSHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHH-HHcCCccccEEEE--CCE--E--eCC-CCCHHHHHHHHc
Confidence 0123 4679999999999 666 2 244 689999999997
Q ss_pred H
Q 022560 293 A 293 (295)
Q Consensus 293 ~ 293 (295)
+
T Consensus 162 ~ 162 (162)
T PF13462_consen 162 K 162 (162)
T ss_dssp H
T ss_pred C
Confidence 5
No 198
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.16 E-value=0.0051 Score=44.86 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=50.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH--HhcCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKHSSKPIKYPSERRDV 284 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~--~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~ 284 (295)
++.|..+||++|+..+..|.+ .+|.|-.+|++++ ++... ...+...+|++++ ++. ...| .+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~----~~~G--f~~ 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDL----SWSG--FRP 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCE----EEec--CCH
Confidence 678899999999998888854 2588999999887 54320 3347789999965 332 1223 778
Q ss_pred HHHHHHHHH
Q 022560 285 DSLMAFVDA 293 (295)
Q Consensus 285 e~l~~fi~~ 293 (295)
+.|.+.+..
T Consensus 67 ~~l~~~~~~ 75 (81)
T PRK10329 67 DMINRLHPA 75 (81)
T ss_pred HHHHHHHHh
Confidence 888877653
No 199
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.15 E-value=0.0014 Score=46.40 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=46.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH--HhcCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKHSSKPIKYPSERRDV 284 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~--~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~ 284 (295)
+..|..++|++|+..+..|++. ++.|-.+|++++ +.... .+.+..++|++++ +|.. ..+ ..+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~~di~~~-~~~~~~~~~~g~~~vP~v~~--~g~~----~~~-G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-------GIAFEEINIDEQ-PEAIDYVKAQGFRQVPVIVA--DGDL----SWS-GFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-------CCceEEEECCCC-HHHHHHHHHcCCcccCEEEE--CCCc----EEe-ccCH
Confidence 3578899999999999888652 588888898877 54440 2347789999755 3432 223 2666
Q ss_pred HHHHH
Q 022560 285 DSLMA 289 (295)
Q Consensus 285 e~l~~ 289 (295)
+.|.+
T Consensus 66 ~~~~~ 70 (72)
T TIGR02194 66 DKLKA 70 (72)
T ss_pred HHHHh
Confidence 77654
No 200
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.14 E-value=0.0013 Score=47.98 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=57.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCC-eeecCCCCCCHH
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSK-PIKYPSERRDVD 285 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~-~~~~~gg~~~~e 285 (295)
|++|..+.|+-|..+...+.++.... .+.+-.||++++ +++. .+|+. .+|.+.+=..++.. .....+ ..+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d-~~l~-~~Y~~-~IPVl~~~~~~~~~~~~~~~~-~~d~~ 74 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDED-PELF-EKYGY-RIPVLHIDGIRQFKEQEELKW-RFDEE 74 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTT-HHHH-HHSCT-STSEEEETT-GGGCTSEEEES-SB-HH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCC-HHHH-HHhcC-CCCEEEEcCcccccccceeCC-CCCHH
Confidence 78899999999999998888764433 589999999988 8888 99996 79996665422111 122223 78999
Q ss_pred HHHHHHH
Q 022560 286 SLMAFVD 292 (295)
Q Consensus 286 ~l~~fi~ 292 (295)
.|.++|+
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999985
No 201
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.10 E-value=0.0022 Score=46.40 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=48.7
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc--HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCC
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE 280 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg 280 (295)
++.-|+.|..+||++|+..+..|++. ++.+-.+|++++. ..+. ...+..++|.+++ +|+ . .||
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~-~~~g~~~vP~i~i--~g~--~---igG 70 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLR-AVTGATTVPQVFI--GGK--L---IGG 70 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHH-HHHCCCCcCeEEE--CCE--E---EcC
Confidence 44557889999999999999888642 4777778876651 2344 5568899999953 554 1 232
Q ss_pred CCCHHHHHHHH
Q 022560 281 RRDVDSLMAFV 291 (295)
Q Consensus 281 ~~~~e~l~~fi 291 (295)
.++|.+||
T Consensus 71 ---~~~l~~~l 78 (79)
T TIGR02190 71 ---SDELEAYL 78 (79)
T ss_pred ---HHHHHHHh
Confidence 36666665
No 202
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.08 E-value=0.0072 Score=45.51 Aligned_cols=94 Identities=14% Similarity=0.220 Sum_probs=70.0
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC-cHHHHHHhcCCC----CCCe-E
Q 022560 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLG----SFPT-I 264 (295)
Q Consensus 191 ~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-~~~l~~~~~~V~----~~Pt-i 264 (295)
.+|..++. ....|+|.|..+-=..-. ....|.++|+..++ .-+++-|||.+. ...|| +++.|. --|. +
T Consensus 10 KdfKKLLR---Tr~NVLvLy~ks~k~a~~-~Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLC-KKlKv~~~~kp~~~~L 83 (112)
T cd03067 10 KDFKKLLR---TRNNVLVLYSKSAKSAEA-LLKLLSDVAQAVKG-QGTIAWIDCGDSESRKLC-KKLKVDPSSKPKPVEL 83 (112)
T ss_pred HHHHHHHh---hcCcEEEEEecchhhHHH-HHHHHHHHHHHhcC-ceeEEEEecCChHHHHHH-HHHccCCCCCCCcchh
Confidence 78888886 677888888876543333 34588889999998 678999999873 27899 999987 4443 5
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 265 LFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 265 ~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
..|++|.- ...|.- ..+..+|+.|+.
T Consensus 84 kHYKdG~f-HkdYdR-~~t~kSmv~Flr 109 (112)
T cd03067 84 KHYKDGDF-HTEYNR-QLTFKSMVAFLR 109 (112)
T ss_pred hcccCCCc-cccccc-hhhHHHHHHHhh
Confidence 56777763 455654 688999999986
No 203
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=97.05 E-value=0.0015 Score=54.99 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCCCCccc---------cChhhhcchhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCceecCC--c
Q 022560 5 AVEVQALVRSKGLFSFYE---------DGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDP--V 71 (295)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~---------~~~~~c~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~~~~--~ 71 (295)
...+++..+.+|+....- .....+|+..+..-|.++..++ ..+++|.+.++. ..+..+.++.-.. .
T Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~-~e~~l~~l~~g~~~~~ 125 (185)
T cd01992 47 AAFVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQ-AETVLMRLLRGSGLRG 125 (185)
T ss_pred HHHHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH-HHHHHHHHHccCCccc
Confidence 445667777777633211 1234567777777777777755 489999999985 3432221111000 0
Q ss_pred ccc--ccCCCCCEEEEeeCCCCCHHHHHHHHHHCCCCCCccc
Q 022560 72 FEG--LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLH 111 (295)
Q Consensus 72 ~~~--~~~~~~~~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly 111 (295)
..+ ....+.+...++||++|+..|||.|.+.++||+.+-+
T Consensus 126 l~~~~~~~~~~~~~virPl~~~~k~eI~~~~~~~~l~~~~~~ 167 (185)
T cd01992 126 LAGMPARIPFGGGRLIRPLLGITRAEIEAYLRENGLPWWEDP 167 (185)
T ss_pred ccCCCcccCCCCCeEECCCCCCCHHHHHHHHHHcCCCeEECC
Confidence 000 0112356889999999999999999999999987654
No 204
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.03 E-value=0.0046 Score=55.01 Aligned_cols=85 Identities=15% Similarity=0.263 Sum_probs=57.7
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEc----------------C--------------------
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA----------------D-------------------- 245 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~----------------~-------------------- 245 (295)
..+.+|+.|.-+.|++|+++.+.+.++.+. + +|.+..+-. .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 456789999999999999999988765432 1 233322211 0
Q ss_pred C----C---------cHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 246 G----D---------QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 246 ~----~---------~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
. . +..+. ++++|+++|++++-+..+. +....| ....++|.+.|.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~-~~lGv~GTPaiv~~d~~G~-~~~v~G-~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLM-DDLGANATPAIYYMDKDGT-LQQVVG-LPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHH-HHcCCCCCCEEEEECCCCC-EEEecC-CCCHHHHHHHhC
Confidence 0 0 13466 7899999999999874331 445556 678999988875
No 205
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.99 E-value=0.0021 Score=46.28 Aligned_cols=55 Identities=24% Similarity=0.498 Sum_probs=38.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHhcCCCCCCeEEEEeCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~---~~~~~V~~~Pti~~~~~g~ 271 (295)
|+.|..++|++|...+..|++. ++.+-.+|++.+ +... .+..+..++|++ |.+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGD-PALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCC-HHHHHHHHHHhCCCCcCEE--EECCE
Confidence 4678899999999999888753 467777777776 4333 034477899997 33454
No 206
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.94 E-value=0.0082 Score=52.40 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=48.5
Q ss_pred CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEE
Q 022560 181 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 242 (295)
Q Consensus 181 ~~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~v 242 (295)
++..|+.+++.....+.+-...++|+||+|.+-.||+-+.-.+.|++++++|.+ .+.|+.|
T Consensus 80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~V 140 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIV 140 (237)
T ss_pred CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehh
Confidence 346788898877555555455899999999999999999999999999999988 3444444
No 207
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.93 E-value=0.0039 Score=44.16 Aligned_cols=55 Identities=18% Similarity=0.353 Sum_probs=39.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HhcCCC-CCCeEEEEeCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLG-SFPTILFFPKHS 271 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~V~-~~Pti~~~~~g~ 271 (295)
|+.|..++|++|...+..|++. ++.+-.+|++.+ .+... +..+.. ++|+++ .+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGD-PALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 5789999999999998888652 477888888876 44330 334665 899773 4454
No 208
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.91 E-value=0.0099 Score=49.46 Aligned_cols=68 Identities=26% Similarity=0.453 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 220 AMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 220 ~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
.....|.++|+.+.+ .+.|+.+. + .+++ +++++.. |++++|+++.+....|.|...+.++|.+||.+.
T Consensus 7 ~~~~~f~~~A~~~~~-~~~F~~~~---~-~~~~-~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG-DYQFGVTF---N-EELA-KKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE-----HHHH-HHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-CcEEEEEc---H-HHHH-HHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 356688999999997 69999888 4 6788 8999998 999999997666899998337999999999864
No 209
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.87 E-value=0.0048 Score=43.74 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=38.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcCCCCCCeEE
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~V~~~Pti~ 265 (295)
|+.|..++|+.|+..+..|++. ++.+-.+|++++. .++. +..+-..+|+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-------gi~~~~~di~~~~~~~~el~-~~~g~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-------GLPYVEINIDIFPERKAELE-ERTGSSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-------CCceEEEECCCCHHHHHHHH-HHhCCCCcCEEE
Confidence 6789999999999998888752 5788888988761 2344 455677889983
No 210
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.83 E-value=0.01 Score=58.82 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=72.3
Q ss_pred cHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEe-CC
Q 022560 192 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP-KH 270 (295)
Q Consensus 192 ~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~-~g 270 (295)
++.+.+.. -.+...|+.|+.+.|..|..+...++++++. .+ ++.+...|..++ .+++ ++|+|...|++.+++ +|
T Consensus 356 ~l~~~~~~-l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~-~i~~~~~~~~~~-~~~~-~~~~v~~~P~~~i~~~~~ 430 (555)
T TIGR03143 356 QLVGIFGR-LENPVTLLLFLDGSNEKSAELQSFLGEFASL-SE-KLNSEAVNRGEE-PESE-TLPKITKLPTVALLDDDG 430 (555)
T ss_pred HHHHHHHh-cCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CC-cEEEEEeccccc-hhhH-hhcCCCcCCEEEEEeCCC
Confidence 34444431 1344567788888999999999999998844 44 588888898887 8888 999999999999996 44
Q ss_pred CCCeeecCCCCCCHHHHHHHHHHh
Q 022560 271 SSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 271 ~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
...-+.|.| --.-.+|..||..+
T Consensus 431 ~~~~i~f~g-~P~G~Ef~s~i~~i 453 (555)
T TIGR03143 431 NYTGLKFHG-VPSGHELNSFILAL 453 (555)
T ss_pred cccceEEEe-cCccHhHHHHHHHH
Confidence 433477777 55567777777654
No 211
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.81 E-value=0.0036 Score=47.52 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=36.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc--HH----HHHHhcCCCCCCeEEEEeCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KE----YAKQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~----l~~~~~~V~~~Pti~~~~~g~ 271 (295)
|+.|..+|||+|++++..|.++ ++.+-.+|+++.. .+ +. +..+..++|.+ |-+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~-~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALS-RLGCSPAVPAV--FVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHH-HhcCCCCcCeE--EECCE
Confidence 6679999999999998877654 3555566666541 22 22 33467899997 44554
No 212
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.81 E-value=0.0051 Score=47.26 Aligned_cols=82 Identities=10% Similarity=0.195 Sum_probs=57.3
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChh---HHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCC
Q 022560 183 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQF---CQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 259 (295)
Q Consensus 183 ~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~---C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~ 259 (295)
.....++.+++++++. .....++ |.+..|.. +....=++-+|.+.+.+ .+..+.|+-+.. ..+. .+|++.
T Consensus 9 ~g~~~vd~~~ld~~l~---~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e-~~L~-~r~gv~ 81 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLA---APGDAVL-FFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAE-RALA-ARFGVR 81 (107)
T ss_dssp -TEEEE-CCCHHHHHH---CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHH-HHHH-HHHT-T
T ss_pred cCCeeechhhHHHHHh---CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhH-HHHH-HHhCCc
Confidence 3456788999999986 4555554 55444433 44444466777777877 677777785555 8899 999999
Q ss_pred CCCeEEEEeCCC
Q 022560 260 SFPTILFFPKHS 271 (295)
Q Consensus 260 ~~Pti~~~~~g~ 271 (295)
.+|++++|++|+
T Consensus 82 ~~PaLvf~R~g~ 93 (107)
T PF07449_consen 82 RWPALVFFRDGR 93 (107)
T ss_dssp SSSEEEEEETTE
T ss_pred cCCeEEEEECCE
Confidence 999999999998
No 213
>PHA03050 glutaredoxin; Provisional
Probab=96.74 E-value=0.0034 Score=48.48 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=36.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC--Cc----HHHHHHhcCCCCCCeEE
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--DQ----KEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~--~~----~~l~~~~~~V~~~Pti~ 265 (295)
|+.|..+|||+|+..+..|.++.-..+ .|-.+|+++ .+ ..+. +.-+..++|+++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~-~~tG~~tVP~If 74 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFE-QITGGRTVPRIF 74 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHH-HHcCCCCcCEEE
Confidence 778999999999999988877632221 344555554 11 2344 556788999993
No 214
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.68 E-value=0.0083 Score=43.88 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=44.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEc--CCC-----------------------------cHHHHHHh
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA--DGD-----------------------------QKEYAKQK 255 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~--~~~-----------------------------~~~l~~~~ 255 (295)
|+.|+.+.|++|..+.+.+.++.....+ ++.+..+.+ ... +..+. .+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA-RA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-HH
Confidence 4689999999999999999998755555 566555543 211 02345 67
Q ss_pred cCCCCCCeEEEEe
Q 022560 256 LQLGSFPTILFFP 268 (295)
Q Consensus 256 ~~V~~~Pti~~~~ 268 (295)
+++.++||+++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999999876
No 215
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.62 E-value=0.0093 Score=42.07 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=46.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc--HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDV 284 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~ 284 (295)
|+.|..+||+.|...+..|++. ++.+-.+|++++. ..+. ...+...+|.+ |.+|+ . .| ..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~-~~~g~~~vP~i--fi~g~--~---ig---g~ 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLR-AVTGAMTVPQV--FIDGE--L---IG---GS 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHH-HHhCCCCcCeE--EECCE--E---Ee---CH
Confidence 6789999999999998887642 4777788887662 2233 44588899997 44554 2 23 25
Q ss_pred HHHHHHH
Q 022560 285 DSLMAFV 291 (295)
Q Consensus 285 e~l~~fi 291 (295)
++|.+||
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 7777775
No 216
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.56 E-value=0.014 Score=44.04 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=37.6
Q ss_pred CCcEEEEEE----CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHhcCCCCCCeEE
Q 022560 203 QEPWLVVLY----APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTIL 265 (295)
Q Consensus 203 ~k~vvV~Fy----a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~---~~~~~V~~~Pti~ 265 (295)
..+|+|+-. ++|||+|+..+..|.+. ++.|..+|++++ .++. ++..+..++|.++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEE
Confidence 455555544 39999999998888664 467778888766 4332 1445667899884
No 217
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.46 E-value=0.014 Score=43.30 Aligned_cols=59 Identities=24% Similarity=0.479 Sum_probs=39.5
Q ss_pred CCcEEEEEEC----CCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHhcCCCCCCeEEEEeCCC
Q 022560 203 QEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 203 ~k~vvV~Fya----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~---~~~~~V~~~Pti~~~~~g~ 271 (295)
+.+|+|+-.. +||++|+..+..|.+. ++.|..+|++++ .++. .+..+..++|.+ |.+|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDILED-EEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEE--EECCE
Confidence 4566665443 7999999988888664 367777787766 4332 144577899997 33554
No 218
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.40 E-value=0.0042 Score=52.46 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCCCcccc------------ChhhhcchhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCceecC-
Q 022560 5 AVEVQALVRSKGLFSFYED------------GHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVD- 69 (295)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~------------~~~~c~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~~~- 69 (295)
...++++.+.+|+....-+ .....|+..+..-|.++..+. ..+++|...++. ..+..+.++.-.
T Consensus 47 ~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~-~e~~l~~~~~g~~ 125 (189)
T TIGR02432 47 AEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQ-AETILLRLLRGSG 125 (189)
T ss_pred HHHHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHH-HHHHHHHHHcCCC
Confidence 4566677788886321111 123335555566666666654 489999999985 332111111000
Q ss_pred ----Ccccc-ccCCCCCEEEEeeCCCCCHHHHHHHHHHCCCCCCccc
Q 022560 70 ----PVFEG-LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLH 111 (295)
Q Consensus 70 ----~~~~~-~~~~~~~~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly 111 (295)
..+.. +..++ +...++||++|+..|||+|++.++||+..-+
T Consensus 126 ~~~l~~~~~~~~~~~-~~~iirPL~~~~k~ei~~~~~~~~lp~~~~~ 171 (189)
T TIGR02432 126 LRGLSGMKPIRILGN-GGQIIRPLLGISKSEIEEYLKENGLPWFEDE 171 (189)
T ss_pred cccccCCccccccCC-CCEEECCCCCCCHHHHHHHHHHcCCCeeeCC
Confidence 00000 01122 5779999999999999999999999987654
No 219
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.016 Score=42.09 Aligned_cols=52 Identities=19% Similarity=0.457 Sum_probs=38.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc----HHHHHHhc-CCCCCCeEEE
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKL-QLGSFPTILF 266 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----~~l~~~~~-~V~~~Pti~~ 266 (295)
++.|..++||+|+..+..|.+ .++.|..+|+++.. .+.. ++. +.+++|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g~~~~~i~~~~~~~~~~~~~~-~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KGVDYEEIDVDDDEPEEAREMV-KRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cCCCcEEEEecCCcHHHHHHHH-HHhCCCCCcCEEEE
Confidence 677889999999998887763 25788888877763 2334 344 7899999766
No 220
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.32 E-value=0.071 Score=40.59 Aligned_cols=91 Identities=13% Similarity=0.248 Sum_probs=63.3
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEe
Q 022560 189 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 268 (295)
Q Consensus 189 t~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~ 268 (295)
+.+++++++. .++.+||-|+..--. .....|.++|..+.+ .+.|+... . ..+. ..+++ .|++++|+
T Consensus 7 s~~~l~~f~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~--~~~ivl~~ 72 (104)
T cd03069 7 TEAEFEKFLS---DDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---D-KQLL-EKYGY--GEGVVLFR 72 (104)
T ss_pred CHHHHHHHhc---cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---h-HHHH-HhcCC--CCceEEEe
Confidence 3455666664 677788878766433 467788999999976 57885544 2 4566 78888 78899984
Q ss_pred C------CCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 269 K------HSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 269 ~------g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+ -......|.| ..+.++|.+||...
T Consensus 73 p~~~~~k~de~~~~y~g-~~~~~~l~~fi~~~ 103 (104)
T cd03069 73 PPRLSNKFEDSSVKFDG-DLDSSKIKKFIREN 103 (104)
T ss_pred chhhhcccCcccccccC-cCCHHHHHHHHHhh
Confidence 3 2233456887 67899999999753
No 221
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.074 Score=43.74 Aligned_cols=92 Identities=14% Similarity=0.218 Sum_probs=67.7
Q ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHhcCCC-
Q 022560 202 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLG- 259 (295)
Q Consensus 202 ~~k~vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~V~- 259 (295)
.++.||++|| ..+++.|-...-.|.....++...+..++.|..|.. +..++ +.|+|.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~-~~ygv~~ 107 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVA-EAYGVWG 107 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHH-HHhCccc
Confidence 5779999999 789999999999999999888876788888876642 25677 788873
Q ss_pred -----------CCCeEEEEeCCCCCeeecCC--CCCCHHHHHHHHHHh
Q 022560 260 -----------SFPTILFFPKHSSKPIKYPS--ERRDVDSLMAFVDAL 294 (295)
Q Consensus 260 -----------~~Pti~~~~~g~~~~~~~~g--g~~~~e~l~~fi~~l 294 (295)
..++.++++..+.+...+.. -.-..+++.+.|+++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 35777888776644444422 134577888888765
No 222
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.17 E-value=0.16 Score=38.49 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=64.5
Q ss_pred eec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeE
Q 022560 186 VTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264 (295)
Q Consensus 186 ~~l-t~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti 264 (295)
..+ +.++++.++. ..+..++|-|+..--. .....|.++|+.+.+ .+.|+... + ..+. ..+++. .|++
T Consensus 3 ~~i~~~~~~e~~~~--~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~~-~~~i 70 (102)
T cd03066 3 EIINSERELQAFEN--IEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATF---D-SKVA-KKLGLK-MNEV 70 (102)
T ss_pred eEcCCHHHHHHHhc--ccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEEC---c-HHHH-HHcCCC-CCcE
Confidence 445 3455666662 0456677777765433 456689999999966 57775443 2 4566 677665 7999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 265 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 265 ~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+++++.......|.+|..+.+.|.+||...
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 999764343566834478999999999753
No 223
>PRK10638 glutaredoxin 3; Provisional
Probab=96.09 E-value=0.025 Score=41.17 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=37.9
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcCCCCCCeEEE
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~V~~~Pti~~ 266 (295)
++.|..++|++|+.....+++. ++.+..+|++.+. .++. +..+...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~~~~~~~l~-~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGDAAKREEMI-KRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHH-HHhCCCCcCEEEE
Confidence 6678899999999988888753 4777778887761 2333 4557788998733
No 224
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.08 E-value=0.0025 Score=57.32 Aligned_cols=87 Identities=18% Similarity=0.380 Sum_probs=69.2
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 281 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~ 281 (295)
+...|-+.||+.||+..+...|.++-....|.. +....++--..-+.+. .++++.+.|++++....- ...|.| .
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~--i~h~~vee~~~lpsv~-s~~~~~~~ps~~~~n~t~--~~~~~~-~ 148 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS--IQHFAVEESQALPSVF-SSYGIHSEPSNLMLNQTC--PASYRG-E 148 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccc--cccccHHHHhhcccch-hccccccCCcceeecccc--chhhcc-c
Confidence 466899999999999999999999998888875 4444443222225667 899999999999998765 677887 7
Q ss_pred CCHHHHHHHHHHh
Q 022560 282 RDVDSLMAFVDAL 294 (295)
Q Consensus 282 ~~~e~l~~fi~~l 294 (295)
++..+|++|..++
T Consensus 149 r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 149 RDLASLVNFYTEI 161 (319)
T ss_pred ccHHHHHHHHHhh
Confidence 9999999998754
No 225
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.86 E-value=0.021 Score=45.80 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=28.6
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 234 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~ 234 (295)
..+.+|+.|+.++||+|+.+.|.+.++...+.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 467899999999999999999999998776644
No 226
>PRK10824 glutaredoxin-4; Provisional
Probab=95.42 E-value=0.063 Score=41.88 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=35.2
Q ss_pred CCcEEEEEEC----CCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHhcCCCCCCeEEE
Q 022560 203 QEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILF 266 (295)
Q Consensus 203 ~k~vvV~Fya----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~---~~~~~V~~~Pti~~ 266 (295)
..+|+|+--. |+||+|+.....|.++ ++.+..+|++++ .++. ++.-+-..+|.+++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQN-PDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE
Confidence 4455554333 6999999998888775 245555677665 4333 03335678888765
No 227
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=95.13 E-value=0.039 Score=46.07 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=46.8
Q ss_pred chhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCcee------cCCccccccCCCCCEEEEeeCCCCCHHHHHHHHH
Q 022560 30 RVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQ------VDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLR 101 (295)
Q Consensus 30 ~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~------~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~y~~ 101 (295)
...+...|.+..+++ .++++|...+|. .....+..+. ..+... ......+...++||++|+..||++|++
T Consensus 91 ~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~-~et~l~~~~~g~~~~~~~~~~~-~~~~~~~~~iirPL~~~~k~eI~~~~~ 168 (185)
T cd01993 91 GVLRRGLLNKIAKELGADKLATGHNLDDE-AETLLMNLLRGGILRLMRPGPI-LYLDEGDVTRIRPLVYVREKEIVLYAE 168 (185)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCChHHH-HHHHHHHHHhcCHHHHcCCCCc-cccCCCCceEEeecccCCHHHHHHHHH
Confidence 334444555555544 589999999885 2211111100 000000 000113467899999999999999999
Q ss_pred HCCCCCCc
Q 022560 102 TMDVPINS 109 (295)
Q Consensus 102 ~~~~p~~~ 109 (295)
.++||+.+
T Consensus 169 ~~~l~~~~ 176 (185)
T cd01993 169 LNGLPFVE 176 (185)
T ss_pred HcCCCccc
Confidence 99999864
No 228
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.84 E-value=0.074 Score=43.65 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=34.1
Q ss_pred CCcEEEEEE-CCCChhHHHH-HHHHHHHHHHhcCCCe-EEEEEEcCC
Q 022560 203 QEPWLVVLY-APWCQFCQAM-EGSYVELADKLAGNGV-KVGKFRADG 246 (295)
Q Consensus 203 ~k~vvV~Fy-a~wC~~C~~~-~p~~~~la~~~~~~~v-~~~~vd~~~ 246 (295)
++.+||.|| +.||+.|... .+.|.+...++...++ .++.|..+.
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 555666655 8999999998 9999999999876556 477777654
No 229
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.1 Score=39.90 Aligned_cols=58 Identities=21% Similarity=0.421 Sum_probs=37.7
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HhcCCCCCCeEEE
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILF 266 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~V~~~Pti~~ 266 (295)
..+ +|.|..+||++|+.++..|.+ +.- ...++.+|-+.+..++-+ +--+.+.+|.+++
T Consensus 13 ~~~-VVifSKs~C~~c~~~k~ll~~----~~v-~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 13 ENP-VVIFSKSSCPYCHRAKELLSD----LGV-NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred cCC-EEEEECCcCchHHHHHHHHHh----CCC-CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 344 456899999999998777766 332 567777777665334431 2224568888665
No 230
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.082 Score=52.66 Aligned_cols=80 Identities=15% Similarity=0.283 Sum_probs=61.6
Q ss_pred ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEEcCCCcHHHHHHhc-------
Q 022560 187 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKL------- 256 (295)
Q Consensus 187 ~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~------- 256 (295)
...++.|.+.-. .+||++|....+||.-|..|..+= .++|+.+.. +++-++||-++- +++- +.|
T Consensus 30 pW~~eAf~~A~~---edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREER-PDvD-~~Ym~~~q~~ 103 (667)
T COG1331 30 PWGEEAFAKAKE---EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREER-PDVD-SLYMNASQAI 103 (667)
T ss_pred ccCHHHHHHHHH---hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhc-cCHH-HHHHHHHHHh
Confidence 356677877665 899999999999999999997754 557877777 788899998886 6554 333
Q ss_pred -CCCCCCeEEEEeCCCC
Q 022560 257 -QLGSFPTILFFPKHSS 272 (295)
Q Consensus 257 -~V~~~Pti~~~~~g~~ 272 (295)
+--+.|-.+|..+.++
T Consensus 104 tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 104 TGQGGWPLTVFLTPDGK 120 (667)
T ss_pred ccCCCCceeEEECCCCc
Confidence 2458999888876553
No 231
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.55 E-value=0.097 Score=50.00 Aligned_cols=51 Identities=14% Similarity=0.355 Sum_probs=38.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHH---HHHHh---------cCCCCCCeEEE
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE---YAKQK---------LQLGSFPTILF 266 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~---l~~~~---------~~V~~~Pti~~ 266 (295)
|+.|..+|||+|+..+..|.+. ++.|-.+|+++. .. +. ++ .+.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~~-~~~~~~~-~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDDD-VKRAEFY-AEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCCC-hhHHHHH-HHHhhccccccCCCCccCeEEE
Confidence 7789999999999988887663 488888998876 42 22 22 36788999965
No 232
>PTZ00062 glutaredoxin; Provisional
Probab=94.35 E-value=0.19 Score=43.30 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=36.5
Q ss_pred CCcEEEEEE----CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHhcCCCCCCeEEE
Q 022560 203 QEPWLVVLY----APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILF 266 (295)
Q Consensus 203 ~k~vvV~Fy----a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~---~~~~~V~~~Pti~~ 266 (295)
..+|+|+-- +|+|++|+++...|.+. ++.+..+|++++ .++. ++.-+-..+|.+++
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS-------GVKYETYNIFED-PDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc-------CCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE
Confidence 445544433 37999999988887753 477888888876 4433 03335567787764
No 233
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.17 E-value=0.085 Score=43.60 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEE
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 240 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~ 240 (295)
..++.|+.|+...||+|+.+.+.+.++.+.+.+ ++.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEE
Confidence 468899999999999999999999999888865 45554
No 234
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=92.78 E-value=2.2 Score=32.56 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=60.2
Q ss_pred eec-CcccHHHHHhhcCCC-CcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCe
Q 022560 186 VTL-NRTGMENLARLDHRQ-EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263 (295)
Q Consensus 186 ~~l-t~~~f~~~i~~~~~~-k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pt 263 (295)
..+ +.++++.++. .. +.+||-|+..--. .....|.++|..+.+ .+.|+... . ..+. .++++. .|.
T Consensus 3 ~~i~s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~---~-~~~~-~~~~~~-~~~ 69 (107)
T cd03068 3 KQLQTLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTF---D-SEIF-KSLKVS-PGQ 69 (107)
T ss_pred eEcCCHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEC---h-HHHH-HhcCCC-CCc
Confidence 344 3456677654 44 6777777766433 466788999999977 57885544 2 4566 677775 577
Q ss_pred EEEEeCC------CCCeeecCCCCCCHHH-HHHHHHH
Q 022560 264 ILFFPKH------SSKPIKYPSERRDVDS-LMAFVDA 293 (295)
Q Consensus 264 i~~~~~g------~~~~~~~~gg~~~~e~-l~~fi~~ 293 (295)
+++|.+. ......|.|...+.++ |..||.+
T Consensus 70 vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 70 LVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred eEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 8888332 2335667763145545 9999975
No 235
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=91.58 E-value=0.26 Score=42.40 Aligned_cols=40 Identities=28% Similarity=0.629 Sum_probs=31.8
Q ss_pred CCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEE
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFR 243 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd 243 (295)
+++.||.|+.-.|++|..+.+.+ ..+.+.+.+ ++.|+.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEec
Confidence 46779999999999999999876 777888776 55555544
No 236
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=91.11 E-value=0.88 Score=37.06 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=35.8
Q ss_pred EEEEECC------CChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHH----HHHHhcCC----CCCCeEEE
Q 022560 207 LVVLYAP------WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQL----GSFPTILF 266 (295)
Q Consensus 207 vV~Fya~------wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~V----~~~Pti~~ 266 (295)
||.|.++ +|++|+.++..|+.+ +|.|-.+|++.+ .+ +. +.++. ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~V~~~e~DVs~~-~~~~~EL~-~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------RVKFDERDVSMD-SGFREELR-ELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHH-HHhCCCCCCCCCCEEEE
Confidence 4566666 899999988888654 488888999876 33 33 34443 57887664
No 237
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=90.04 E-value=1.4 Score=31.23 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=50.4
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCC
Q 022560 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 270 (295)
Q Consensus 206 vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g 270 (295)
++..|-+..-+..+.....+.++.+.+.+..+.+=.||+.++ ++++ ..++|..+||++=...+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLvk~~P~ 65 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ-PQLA-EEDKIVATPTLVKVLPP 65 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC-HhHH-hhCCEEEechhhhcCCC
Confidence 455566666688888888888887777555789999999999 9999 99999999998755443
No 238
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=88.09 E-value=1.6 Score=30.28 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=34.9
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEE
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~ 265 (295)
+.|+.++|+.|++..-.+.+. +-.+.+..+|......++. +......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~~~~~~~-~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GITVELREVELKNKPAEML-AASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCCCCHHHH-HHCCCCCCCEEE
Confidence 467899999999876555443 3235666666654325665 556678899985
No 239
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=87.90 E-value=6.8 Score=29.27 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=49.5
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCC
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 282 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~ 282 (295)
+...++.|..+. ..|..+...++++++.-. ++.+-..+.+ . ..|++.+..+|+..-++|.| --
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~~--------~-----~~P~~~i~~~~~~~gIrF~G-iP 81 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDNDD--------E-----RKPSFSINRPGEDTGIRFAG-IP 81 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecCC--------C-----CCCEEEEecCCCcccEEEEe-cC
Confidence 344455565555 899999988888887653 3555332211 1 37999999877543478887 55
Q ss_pred CHHHHHHHHHHh
Q 022560 283 DVDSLMAFVDAL 294 (295)
Q Consensus 283 ~~e~l~~fi~~l 294 (295)
.-.++..||..+
T Consensus 82 ~GhEf~Slilai 93 (94)
T cd02974 82 MGHEFTSLVLAL 93 (94)
T ss_pred CchhHHHHHHHh
Confidence 667888888654
No 240
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=87.86 E-value=1 Score=40.15 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=25.8
Q ss_pred CEEEEeeCCCCCHHHHHHHHHHCCCCCC
Q 022560 81 SLVKWNPVANVKGNDIWNFLRTMDVPIN 108 (295)
Q Consensus 81 ~~~~~~Pi~~W~~~dvw~y~~~~~~p~~ 108 (295)
.+-.++|+++++..||..|.+.++||+.
T Consensus 171 ~i~iiRPLl~~~k~eI~~y~~~~~lp~~ 198 (258)
T PRK10696 171 KHIVIRPLAYVAEKDIIKFAEAKEFPII 198 (258)
T ss_pred ceeEEecCccCCHHHHHHHHHHcCCCEe
Confidence 4678999999999999999999999974
No 241
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=87.62 E-value=0.96 Score=34.27 Aligned_cols=78 Identities=10% Similarity=0.128 Sum_probs=44.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcCCCCCCeEEEEeCCCCCeeecCC----
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYPS---- 279 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~g---- 279 (295)
+..|+.++|+.|+.....|++. ++.|-.+|+.++. .++. +-++-.+.+.--+++..+. ...-.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~~l~-~~~~~~~~~~~~li~~~~~-~~~~l~~~~~ 71 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLKEPPTKEELK-ELLAKLGLGVEDLFNTRGT-PYRKLGLADK 71 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-------CCCcEEEeeccCCCCHHHHH-HHHHhcCCCHHHHHhcCCc-hHHHcCCccc
Confidence 3578999999999988777652 4677777775531 2333 3333334444444443321 111111
Q ss_pred CCCCHHHHHHHHHH
Q 022560 280 ERRDVDSLMAFVDA 293 (295)
Q Consensus 280 g~~~~e~l~~fi~~ 293 (295)
...+.+++.++|.+
T Consensus 72 ~~ls~~e~~~~l~~ 85 (105)
T cd02977 72 DELSDEEALELMAE 85 (105)
T ss_pred cCCCHHHHHHHHHh
Confidence 14678888888764
No 242
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=87.58 E-value=7.5 Score=31.85 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=43.9
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc----------HHHHHHhcCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------KEYAKQKLQLG 259 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------~~l~~~~~~V~ 259 (295)
++++++|.=.|+-|+.--+. ..|+.|.+.|+++++.++.+-|++-. ..+|+..|+|+
T Consensus 24 ~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVt 90 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVT 90 (162)
T ss_pred CCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCce
Confidence 68999999999999987754 47888899998888999888876531 35665566664
No 243
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=87.20 E-value=6.2 Score=37.45 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=65.9
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHHHH--HHHHH-HHHHhcCCCeEEEEEEcCCCc-HHHHHHhcCCCCCCeEEE
Q 022560 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAME--GSYVE-LADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 191 ~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~--p~~~~-la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~V~~~Pti~~ 266 (295)
.++-+.+...+.++.++|.|-+---.....|. -.... +++.... .++.++|+..... ..+. .-|.+..+|+++|
T Consensus 6 GnipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~-~fVaIkiqags~aa~qFs-~IYp~v~vPs~ff 83 (506)
T KOG2507|consen 6 GNIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK-YFVAIKIQAGSVAATQFS-AIYPYVSVPSIFF 83 (506)
T ss_pred cchHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc-ceEEEEeccCchhhhhhh-hhcccccccceee
Confidence 34555555556778888888887766666665 22222 2333333 4666777765431 4666 7889999999999
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 267 FPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 267 ~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
+...+. ++....|....++|..-|+++
T Consensus 84 Ig~sGt-pLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 84 IGFSGT-PLEVITGFVTADELASSIEKV 110 (506)
T ss_pred ecCCCc-eeEEeeccccHHHHHHHHHHH
Confidence 976554 444444478899999888874
No 244
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.39 E-value=5.4 Score=39.17 Aligned_cols=76 Identities=12% Similarity=0.045 Sum_probs=52.9
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCC
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 282 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~ 282 (295)
.++|-+.++.+-|..|..+...++++++.-. ++.+-..+ . . ...|++.+..+|+..-+.|.| --
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~~~---~------~----~~~p~~~~~~~~~~~~i~f~g-~P 81 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLSD--KITVEEDS---L------D----VRKPSFSITRPGEDTGVRFAG-IP 81 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEcc---C------C----CCCCEEEEEcCCccceEEEEe-cC
Confidence 4566666666689999999999988887653 36553311 1 1 237999999877655678887 56
Q ss_pred CHHHHHHHHHHh
Q 022560 283 DVDSLMAFVDAL 294 (295)
Q Consensus 283 ~~e~l~~fi~~l 294 (295)
.-.+|..||..+
T Consensus 82 ~g~Ef~s~i~~i 93 (517)
T PRK15317 82 MGHEFTSLVLAL 93 (517)
T ss_pred ccHHHHHHHHHH
Confidence 667888887654
No 245
>PRK09301 circadian clock protein KaiB; Provisional
Probab=84.62 E-value=6.4 Score=29.96 Aligned_cols=82 Identities=10% Similarity=-0.025 Sum_probs=61.0
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 281 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~ 281 (295)
+...++=.|.|..-+..+.....+.++.+.+....+.+=.||+.++ +.++ ..++|..+||++=..+.- .-+..|+.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q-PelA-E~~~IvATPTLIK~~P~P--~rriiGDl 79 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN-PQLA-EEDKILATPTLAKILPPP--VRKIIGDL 79 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCeEEecHHhhcCCCC--cceeeccc
Confidence 3456777888888888999888888887765553688889999999 9999 999999999987665543 33444533
Q ss_pred CCHHHH
Q 022560 282 RDVDSL 287 (295)
Q Consensus 282 ~~~e~l 287 (295)
-+.+.+
T Consensus 80 sd~~kV 85 (103)
T PRK09301 80 SDREKV 85 (103)
T ss_pred ccHHHH
Confidence 334443
No 246
>PHA03075 glutaredoxin-like protein; Provisional
Probab=84.29 E-value=1.7 Score=33.65 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=25.5
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHHHhc
Q 022560 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLA 233 (295)
Q Consensus 204 k~vvV~Fya~wC~~C~~~~p~~~~la~~~~ 233 (295)
|.++|.|..|.|+-|+.....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999988877766653
No 247
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=84.09 E-value=7.9 Score=28.56 Aligned_cols=72 Identities=8% Similarity=-0.100 Sum_probs=55.9
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCC
Q 022560 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS 279 (295)
Q Consensus 204 k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~g 279 (295)
..++=.|.|..-+.++.....+.++.+.+....+.+=.||+.++ ++++ +.++|-.+||++=..+.- .-+..|
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q-P~lA-E~~~IvATPtLIK~~P~P--~rriiG 74 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN-PQLA-EEDKILATPTLSKILPPP--VRKIIG 74 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCEEEecHHhhcCCCC--cceeec
Confidence 34566777888888888888888877765553688889999999 9999 999999999987665553 334445
No 248
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=83.32 E-value=9.2 Score=26.85 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=42.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD 283 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~ 283 (295)
+..|+.++|+.|++.+-.+.+. ++.+-.++++... .++. +.-....+|+++. .+|+ .. ..+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~v~~~~~~~~~~~-~~~p~~~vP~l~~-~~~~--~~-----l~e 65 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-------ELDVILYPCPKGSPKRDKFL-EKGGKVQVPYLVD-PNTG--VQ-----MFE 65 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-------CCcEEEEECCCChHHHHHHH-HhCCCCcccEEEe-CCCC--eE-----EEc
Confidence 4567788999999877666543 2444445554431 2343 3335568998753 2222 12 235
Q ss_pred HHHHHHHHHHh
Q 022560 284 VDSLMAFVDAL 294 (295)
Q Consensus 284 ~e~l~~fi~~l 294 (295)
...|.++|++.
T Consensus 66 s~~I~~yL~~~ 76 (77)
T cd03041 66 SADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHHHh
Confidence 57788888753
No 249
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=82.49 E-value=1.6 Score=26.71 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHCCCCCCccc
Q 022560 90 NVKGNDIWNFLRTMDVPINSLH 111 (295)
Q Consensus 90 ~W~~~dvw~y~~~~~~p~~~ly 111 (295)
.|+..|+-.||..|||++.+-.
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCC
Confidence 6999999999999999998754
No 250
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=82.33 E-value=2.2 Score=32.81 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=44.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHhcCCCCCCeEEEEeCCCCCe--eecCC--C
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKP--IKYPS--E 280 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~V~~~Pti~~~~~g~~~~--~~~~g--g 280 (295)
..|+.++|+.|+.....|++- ++.|-.+|+.++. .++. .-++..+.|..-+++..+... ..... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~el~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIVEEPPSKEELK-KWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCceEEecccCCcccHHHHH-HHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 568899999999988777652 4777777776541 2222 333344556655565443211 11111 0
Q ss_pred CCCHHHHHHHHHH
Q 022560 281 RRDVDSLMAFVDA 293 (295)
Q Consensus 281 ~~~~e~l~~fi~~ 293 (295)
..+.+++.++|.+
T Consensus 74 ~~s~~e~~~~l~~ 86 (111)
T cd03036 74 SLSEEEALELLSS 86 (111)
T ss_pred cCCHHHHHHHHHh
Confidence 2456777777654
No 251
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.88 E-value=8.4 Score=37.85 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=52.1
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCC
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 282 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~ 282 (295)
.++|.+.++.+-|..|..+...++++++.-. ++.+...+.+. ...|++.+..+|+..-+.|.| .-
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--ki~~~~~~~~~------------~~~p~~~~~~~~~~~~i~f~g-~P 82 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSD--KISLTQNTADT------------LRKPSFTILRDGADTGIRFAG-IP 82 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC--CeEEEEecCCc------------CCCCeEEEecCCcccceEEEe-cC
Confidence 4556555555579999999988888887653 46664433221 246999998777654577877 55
Q ss_pred CHHHHHHHHHHh
Q 022560 283 DVDSLMAFVDAL 294 (295)
Q Consensus 283 ~~e~l~~fi~~l 294 (295)
.-.+|..||..+
T Consensus 83 ~g~Ef~s~i~~i 94 (515)
T TIGR03140 83 GGHEFTSLVLAI 94 (515)
T ss_pred CcHHHHHHHHHH
Confidence 667788887654
No 252
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=81.29 E-value=15 Score=25.43 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=41.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHH
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD 285 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e 285 (295)
+..|+.+.|+.|+..+-.+.+. + +.+-.++++... .++ +.-+...+|++..=..|.. .+ -.+..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----g--i~y~~~~~~~~~~~~~--~~~~~~~vP~l~~~~~~~~-~~-----l~eS~ 66 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----G--IPYEVVEVNPVSRKEI--KWSSYKKVPILRVESGGDG-QQ-----LVDSS 66 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----C--CceEEEECCchhHHHH--HHhCCCccCEEEECCCCCc-cE-----EEcHH
Confidence 4578889999999988555443 2 444444443321 233 2345568998875422211 11 23557
Q ss_pred HHHHHHHHh
Q 022560 286 SLMAFVDAL 294 (295)
Q Consensus 286 ~l~~fi~~l 294 (295)
.|.++|++.
T Consensus 67 ~I~~yL~~~ 75 (77)
T cd03040 67 VIISTLKTY 75 (77)
T ss_pred HHHHHHHHH
Confidence 788887753
No 253
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=78.22 E-value=5.5 Score=27.30 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=41.9
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHH
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 287 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l 287 (295)
..|+.+.|+.|+...-.+.+..- .+....+|......++. +......+|++. .+|. . ......|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi-----~~~~~~v~~~~~~~~~~-~~~p~~~vP~l~--~~~~---~-----l~es~aI 65 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV-----SVEIIDVDPDNPPEDLA-ELNPYGTVPTLV--DRDL---V-----LYESRII 65 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC-----ccEEEEcCCCCCCHHHH-hhCCCCCCCEEE--ECCE---E-----EEcHHHH
Confidence 56788999999988766644322 23444455544324555 555667899774 2332 1 2345667
Q ss_pred HHHHHH
Q 022560 288 MAFVDA 293 (295)
Q Consensus 288 ~~fi~~ 293 (295)
..+|++
T Consensus 66 ~~yL~~ 71 (73)
T cd03059 66 MEYLDE 71 (73)
T ss_pred HHHHHh
Confidence 777764
No 254
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=77.62 E-value=9.6 Score=34.70 Aligned_cols=90 Identities=9% Similarity=0.139 Sum_probs=59.7
Q ss_pred CCCCcEEEEEECC-----CChhHHHHHHHHHHHHHHhcC-----CCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCC
Q 022560 201 HRQEPWLVVLYAP-----WCQFCQAMEGSYVELADKLAG-----NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 270 (295)
Q Consensus 201 ~~~k~vvV~Fya~-----wC~~C~~~~p~~~~la~~~~~-----~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g 270 (295)
.++|.|++..-.. .-.+-+.+....+++++.+.+ +.++|+-+|..+....+ .+.--+.|++++|+-.
T Consensus 248 ~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqi---lM~als~P~l~i~Nts 324 (468)
T KOG4277|consen 248 ASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQI---LMAALSEPHLFIFNTS 324 (468)
T ss_pred cCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHH---HHHhhcCCeEEEEecC
Confidence 4678777766543 345677888899999988866 37899999876641122 2334578999999765
Q ss_pred CCCeee--cCCCCCCHHHHHHHHHH
Q 022560 271 SSKPIK--YPSERRDVDSLMAFVDA 293 (295)
Q Consensus 271 ~~~~~~--~~gg~~~~e~l~~fi~~ 293 (295)
.....- -.....+.++|..||+.
T Consensus 325 nqeYfLse~d~qikniedilqFien 349 (468)
T KOG4277|consen 325 NQEYFLSEDDPQIKNIEDILQFIEN 349 (468)
T ss_pred chheeeccCChhhhhHHHHHHHHhc
Confidence 531111 11124678999999875
No 255
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=77.04 E-value=5 Score=27.43 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=33.6
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHhcCCCCCCeEEE
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~---~~~~l~~~~~~V~~~Pti~~ 266 (295)
..|+.++|++|+...-.+....- .+....++... ...++. +......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l-----~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI-----DVPLVTVDLAAGEQRSPEFL-AKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC-----CceEEEeecccCccCCHHHH-hhCCCCCCCEEEe
Confidence 46788999999998877655421 24445555432 114555 5556678999865
No 256
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=76.40 E-value=13 Score=25.84 Aligned_cols=70 Identities=11% Similarity=0.226 Sum_probs=45.3
Q ss_pred EEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHH
Q 022560 209 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLM 288 (295)
Q Consensus 209 ~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~ 288 (295)
+|+.++|+.|++..-.++. ++-.+.+..++..+....+. +...-..+|++. .+|. . ..+...|.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~i~~~~~~v~~~~~~~~~~-~~~p~~~vPvL~--~~g~---~-----l~dS~~I~ 64 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KGIPYELVPVDPEEKRPEFL-KLNPKGKVPVLV--DDGE---V-----LTDSAAII 64 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HTEEEEEEEEBTTSTSHHHH-HHSTTSBSSEEE--ETTE---E-----EESHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cCCeEEEeccCcccchhHHH-hhcccccceEEE--ECCE---E-----EeCHHHHH
Confidence 4788999999987655543 33135555666555435666 666778899997 4444 1 23567788
Q ss_pred HHHHHh
Q 022560 289 AFVDAL 294 (295)
Q Consensus 289 ~fi~~l 294 (295)
++|++.
T Consensus 65 ~yL~~~ 70 (75)
T PF13417_consen 65 EYLEER 70 (75)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 257
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=76.25 E-value=4.3 Score=33.68 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=37.1
Q ss_pred CCEEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCCCCCHHHHHHHHHHCCCCC
Q 022560 44 LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI 107 (295)
Q Consensus 44 ~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~y~~~~~~p~ 107 (295)
++.+++|.-.+|.+ .-......... ...+.--++|+++++..||+.|.++++||.
T Consensus 104 ~~~I~~G~~~~D~~-~~~~~~l~~~~--------~~~~~~i~rPl~~~~K~eI~~~a~~~gl~~ 158 (177)
T cd01712 104 ADAIVTGESLGQVA-SQTLENLLVIS--------SGTDLPILRPLIGFDKEEIIGIARRIGTYD 158 (177)
T ss_pred CCEEEEccCcccch-HHHHHhhhhcc--------cCCCCeEECCCCCCCHHHHHHHHHHcCCcc
Confidence 45899999777642 21111111111 113467899999999999999999999876
No 258
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=76.17 E-value=12 Score=24.49 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=32.5
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcH-HHHHHhcCCCCCCeEEE
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK-EYAKQKLQLGSFPTILF 266 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~-~l~~~~~~V~~~Pti~~ 266 (295)
..|+.++|+.|+...-.+....- .+....++...... .+. +......+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i-----~~~~~~~~~~~~~~~~~~-~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL-----PYELVPVDLGEGEQEEFL-ALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-----CcEEEEeCCCCCCCHHHH-hcCCCCCCCEEEE
Confidence 36788999999987766655421 24444555433312 244 5567778998764
No 259
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=75.57 E-value=22 Score=31.75 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=57.6
Q ss_pred CCCcEEEEEECCCChh-HHHHHHHHHHHHHHhcC-CC----eEEEEEEcCCCc-------------------------HH
Q 022560 202 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAG-NG----VKVGKFRADGDQ-------------------------KE 250 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~-C~~~~p~~~~la~~~~~-~~----v~~~~vd~~~~~-------------------------~~ 250 (295)
.+|-+|++|.-+.||. |-.....+.++.++... .+ -.|+.||=+.+. .+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 5789999999999974 76666666665555544 12 257777753321 35
Q ss_pred HHHHhcCCCCCC-------------eEEEE--eCCCCCeeecCCCCCCHHHHHHHHHH
Q 022560 251 YAKQKLQLGSFP-------------TILFF--PKHSSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 251 l~~~~~~V~~~P-------------ti~~~--~~g~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
+| ++|.|.--+ ++++| ++.++ .+.|.|..++.+++.+-|.+
T Consensus 218 va-k~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~-Fvd~~GrN~~~~~~~~~I~~ 273 (280)
T KOG2792|consen 218 VA-KKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGE-FVDYYGRNYDADELADSILK 273 (280)
T ss_pred HH-HHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcc-eehhhcccCCHHHHHHHHHH
Confidence 67 777774222 23443 43333 88888878899998877654
No 260
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=75.56 E-value=7.7 Score=34.41 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=39.5
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 269 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~ 269 (295)
.+|+.+++..+.|||.|...+=.+-.+-..|.. +.+....-+.. + .--.+|+++|..-
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn--~~l~~~~S~~~------d--~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN--FSLEYHYSDPY------D--NYPNTPTLIFNNY 114 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC--eeeEEeecCcc------c--CCCCCCeEEEecC
Confidence 789999999999999999988888777777765 42222211111 0 1246888887754
No 261
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=73.95 E-value=38 Score=26.06 Aligned_cols=107 Identities=10% Similarity=0.010 Sum_probs=75.7
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHH---HHhcCCC-C
Q 022560 186 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYA---KQKLQLG-S 260 (295)
Q Consensus 186 ~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~---~~~~~V~-~ 260 (295)
..|+.+++.++=. ...++..+|.|--+--+.=.++.+.+.++|+.+.+ .++.|+=||=++. +-+. .+-|+|. .
T Consensus 4 rkl~~~~m~e~we-dd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F-Pllv~yWektF~IDl~ 81 (120)
T cd03074 4 RKLKPENMFETWE-DDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF-PLLVPYWEKTFGIDLF 81 (120)
T ss_pred hhccHHHHHHhhh-cccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC-chhhHHHHhhcCcccC
Confidence 3456666555443 23457889999999999999999999999999987 6899999998887 5443 1345653 3
Q ss_pred CCeEEEEeCCC--CCeeecCCC--CCCHHHHHHHHHHh
Q 022560 261 FPTILFFPKHS--SKPIKYPSE--RRDVDSLMAFVDAL 294 (295)
Q Consensus 261 ~Pti~~~~~g~--~~~~~~~gg--~~~~e~l~~fi~~l 294 (295)
-|.+-+.+-.. ..-....+. ..+.++|.+||+.+
T Consensus 82 ~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 82 RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred CCceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 48888875332 223444331 36799999999864
No 262
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=73.74 E-value=7.2 Score=30.12 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=25.8
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 247 (295)
..|+.++|+.|+.....+++- ++.|-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-------GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCceEEEecCCC
Confidence 468899999999988777662 477778887665
No 263
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=73.59 E-value=6.2 Score=36.89 Aligned_cols=26 Identities=8% Similarity=0.240 Sum_probs=23.9
Q ss_pred EEeeCCCCCHHHHHHHHHHCCCCCCc
Q 022560 84 KWNPVANVKGNDIWNFLRTMDVPINS 109 (295)
Q Consensus 84 ~~~Pi~~W~~~dvw~y~~~~~~p~~~ 109 (295)
.++||.+|+..||-+|.+.++||+..
T Consensus 163 ~i~PL~~~~K~EVr~~A~~~gl~~~~ 188 (352)
T TIGR00420 163 LLFPLGELLKPEVRQIAKNAGLPTAE 188 (352)
T ss_pred hcccCCCCCHHHHHHHHHHcCCCCCC
Confidence 68999999999999999999998644
No 264
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=72.82 E-value=11 Score=31.36 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=35.6
Q ss_pred CCCcEEEEEECCCC-hhHHHHHHHHHHHHHHhcC--CCeEEEEEEcCC
Q 022560 202 RQEPWLVVLYAPWC-QFCQAMEGSYVELADKLAG--NGVKVGKFRADG 246 (295)
Q Consensus 202 ~~k~vvV~Fya~wC-~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~ 246 (295)
.+|+++|.|.-+.| ..|-.+...+.++.+.+.. .++.++.|.+|-
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 68999999999999 6798888888888777764 368888887764
No 265
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=72.62 E-value=3.1 Score=34.15 Aligned_cols=99 Identities=12% Similarity=0.164 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCCccccChhhhcchhchHHHHHHHh--cCCEEEEeeeccCCCcccCCC-C-ceec-CCccccccCCCC
Q 022560 6 VEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEI-P-VVQV-DPVFEGLEGGVG 80 (295)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~c~~~~K~~pl~~~l~--~~~~~~~G~R~~es~~~R~~~-~-~~~~-~~~~~~~~~~~~ 80 (295)
..++.+.+.+|...+. .|.......-+.+... +++.+++|...+|. ...... + +++. +. ... .....
T Consensus 42 ~~~~~~~~~~g~~~~~-----~~~~~~~~~~l~~~a~~~g~~~i~~G~~~~d~-~~~~~~~~~~~~~~~~-~~~-~~~~~ 113 (169)
T cd01995 42 EAAKLIAEKLGPSTYV-----PARNLIFLSIAAAYAEALGAEAIIIGVNAEDY-SGYPDCRPEFIEAMNK-ALN-LGTEN 113 (169)
T ss_pred HHHHHHHHHHCCCEEE-----eCcCHHHHHHHHHHHHHCCCCEEEEeeccCcc-CCCCCCCHHHHHHHHH-HHH-hhcCC
Confidence 4566667777732111 1323222222333323 34589999999874 221110 0 0000 00 000 00112
Q ss_pred CEEEEeeCCCCCHHHHHHHHHHCCCCCCcccc
Q 022560 81 SLVKWNPVANVKGNDIWNFLRTMDVPINSLHS 112 (295)
Q Consensus 81 ~~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~ 112 (295)
++--++||+.|+..||..+++++++|+..-|.
T Consensus 114 ~~~v~~PL~~~~K~ei~~~~~~~g~~~~~s~s 145 (169)
T cd01995 114 GIKIHAPLIDLSKAEIVRLGGELGVPLELTWS 145 (169)
T ss_pred CeEEEeCcccCCHHHHHHHHhHcCCChhheee
Confidence 34447899999999999999999999876554
No 266
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=72.57 E-value=7.1 Score=30.96 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=25.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 247 (295)
+..|+.++|+.|+.....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCC
Confidence 5678899999999977666542 467777776554
No 267
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=72.41 E-value=32 Score=29.28 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=60.2
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHHH
Q 022560 203 QEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAKQ 254 (295)
Q Consensus 203 ~k~vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~~ 254 (295)
+|-+++.|| ++.=..|-.....|.+...+|+..++.++.+.+|.. +.+++ +
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs-~ 111 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIA-R 111 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHH-H
Confidence 455666666 566677777788888888888877788888877642 14677 7
Q ss_pred hcCCCC------CCeEEEEeCCCCC-e-eecCCC-CCCHHHHHHHHHHhC
Q 022560 255 KLQLGS------FPTILFFPKHSSK-P-IKYPSE-RRDVDSLMAFVDALR 295 (295)
Q Consensus 255 ~~~V~~------~Pti~~~~~g~~~-~-~~~~gg-~~~~e~l~~fi~~l~ 295 (295)
.|++-. +=.++++++.+.+ . ..+... .++.+++...|+.+|
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred HcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 887753 2235566555431 1 112211 489999999998875
No 268
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=71.71 E-value=34 Score=26.38 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=41.5
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEe
Q 022560 189 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 268 (295)
Q Consensus 189 t~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~ 268 (295)
.++.+..++....+-+.++|.=.-+-- .+.+.+..+.+......-. .++.=+ +.+. ++|+|+.+|++++-+
T Consensus 9 P~~~L~~l~~~a~~~~~~~V~RG~~~g----~~~~t~~~~~~l~~~~~~~---~~v~Id-P~~F-~~y~I~~VPa~V~~~ 79 (113)
T PF09673_consen 9 PDASLRNLLKQAERAGVVVVFRGFPDG----SFKPTAKAIQELLRKDDPC---PGVQID-PRLF-RQYNITAVPAFVVVK 79 (113)
T ss_pred CHHHHHHHHHHHHhCCcEEEEECCCCC----CHHHHHHHHHHHhhccCCC---cceeEC-hhHH-hhCCceEcCEEEEEc
Confidence 345566665544444444444333322 4566555555555441111 122223 7888 999999999999998
Q ss_pred C
Q 022560 269 K 269 (295)
Q Consensus 269 ~ 269 (295)
+
T Consensus 80 ~ 80 (113)
T PF09673_consen 80 D 80 (113)
T ss_pred C
Confidence 8
No 269
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=70.89 E-value=3.6 Score=34.39 Aligned_cols=19 Identities=26% Similarity=0.719 Sum_probs=15.4
Q ss_pred HHHHHHhcCCCCCCeEEEEe
Q 022560 249 KEYAKQKLQLGSFPTILFFP 268 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~ 268 (295)
..++ ++++|+++||+++|+
T Consensus 137 ~~la-~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 137 QQLA-REMGITGFPTLVIFN 155 (176)
T ss_dssp HHHH-HHTT-SSSSEEEEE-
T ss_pred HHHH-HHcCCCCCCEEEEEe
Confidence 5677 899999999999998
No 270
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=70.10 E-value=55 Score=26.23 Aligned_cols=90 Identities=9% Similarity=0.081 Sum_probs=58.6
Q ss_pred CCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCeEEEEEEcCCCc-----------------HHHHHHhcCCCC
Q 022560 201 HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-----------------KEYAKQKLQLGS 260 (295)
Q Consensus 201 ~~~k~vvV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~-----------------~~l~~~~~~V~~ 260 (295)
.+.|+.+|+.++|--..+..+-..+ +.+.+.+++ ++.+-.-|+.... .... +.++...
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~-nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~-~~~~~~~ 96 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ-NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTI-RNIKTDQ 96 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc-CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHH-HhcCcCC
Confidence 3578999999998764444333333 344555555 6888788876641 1234 5678999
Q ss_pred CCeEEEEeCCC---CCeeecCCCCCCHHHHHHHHHH
Q 022560 261 FPTILFFPKHS---SKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 261 ~Pti~~~~~g~---~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
+|.+.++-... .++....| ..++++|+.-|..
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G-~~~~~ell~~L~~ 131 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQG-NTGVDELLMRLIE 131 (136)
T ss_pred CCeEEEEEecCCceEEEEEEEC-CCCHHHHHHHHHH
Confidence 99999995433 22344444 8999999887754
No 271
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=68.77 E-value=5.3 Score=30.42 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=24.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 247 (295)
+..|+.|+|+.|+.....|++- ++.|-.+|+.++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccC
Confidence 3578999999999987766543 466666776554
No 272
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=68.24 E-value=2.5 Score=30.85 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=44.3
Q ss_pred EECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEE
Q 022560 210 LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 210 Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~ 266 (295)
|-+..-+..+.....+..+.+.+-+..+.+-.||+.++ ++++ ..++|-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ-PELA-EEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS-HSHH-TTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC-HhHH-hHCCeeecceEee
Confidence 44444556677788888888876555899999999999 9999 9999999999763
No 273
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=68.15 E-value=20 Score=27.53 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=39.6
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 247 (295)
+++++||.=.|+-|+.-. .-..|++|.++|++.++.++.+=|++-
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 689999999999999988 666999999999876899999988763
No 274
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.85 E-value=11 Score=32.90 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 250 EYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 250 ~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
..+ ++++|+++|+++| +++ +...| ..+++-|..-|+++
T Consensus 175 ~~A-~e~gI~gVP~fv~--d~~---~~V~G-aq~~~v~~~al~~~ 212 (225)
T COG2761 175 AAA-QEMGIRGVPTFVF--DGK---YAVSG-AQPYDVLEDALRQL 212 (225)
T ss_pred HHH-HHCCCccCceEEE--cCc---EeecC-CCCHHHHHHHHHHH
Confidence 455 7899999999999 443 55667 68888888888765
No 275
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=66.98 E-value=19 Score=31.01 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=35.4
Q ss_pred CCCcEEEEEECCCCh-hHHHHHHHHHHHHHHhc-C--CCe--EEEEEEcCCCcHHHH
Q 022560 202 RQEPWLVVLYAPWCQ-FCQAMEGSYVELADKLA-G--NGV--KVGKFRADGDQKEYA 252 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~-~C~~~~p~~~~la~~~~-~--~~v--~~~~vd~~~~~~~l~ 252 (295)
++++++|.|.=+.|+ .|-.+...+.++.++.. . .++ .|+.||=+.+.+++.
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~l 122 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVL 122 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHH
Confidence 689999999988885 69888888888888877 3 344 455555433333333
No 276
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=66.00 E-value=13 Score=31.05 Aligned_cols=34 Identities=15% Similarity=0.436 Sum_probs=26.0
Q ss_pred EEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEE
Q 022560 209 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 243 (295)
Q Consensus 209 ~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd 243 (295)
+|..|.|+.|-.+.|.+.++...+.+ .+.|-.|-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEEEEE
Confidence 68999999999999999999999988 55554443
No 277
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=65.91 E-value=22 Score=24.16 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=37.3
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHH
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 287 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l 287 (295)
..|+.++|++|++.+-.+... +-.+....++.... .... +...-..+|++.. .+|. . -.+...|
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~-----gl~~~~~~~~~~~~-~~~~-~~~~~~~vP~L~~-~~~~--~------l~es~aI 65 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLK-----NIPVEQIILQNDDE-ATPI-RMIGAKQVPILEK-DDGS--F------MAESLDI 65 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHc-----CCCeEEEECCCCch-HHHH-HhcCCCccCEEEe-CCCe--E------eehHHHH
Confidence 357789999999877666443 31233333443322 2223 3344567888743 3232 1 2345667
Q ss_pred HHHHH
Q 022560 288 MAFVD 292 (295)
Q Consensus 288 ~~fi~ 292 (295)
.+||+
T Consensus 66 ~~yL~ 70 (71)
T cd03037 66 VAFID 70 (71)
T ss_pred HHHHh
Confidence 77765
No 278
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=65.82 E-value=12 Score=32.88 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=39.6
Q ss_pred CCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC---CCeEEEEEEcCCC
Q 022560 201 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG---NGVKVGKFRADGD 247 (295)
Q Consensus 201 ~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~---~~v~~~~vd~~~~ 247 (295)
..+.++||.+-..+|..|..-...|+.|..++.. .+|.|+.||--..
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 3678999999999999999999999999887765 4799999996543
No 279
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=65.22 E-value=13 Score=31.72 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCC--CCCHHHHHHHHHH
Q 022560 249 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE--RRDVDSLMAFVDA 293 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg--~~~~e~l~~fi~~ 293 (295)
..++ +++++.++||+++-.+|+- .....| ..+.+.+..++.+
T Consensus 164 r~l~-~rlg~~GfPTl~le~ng~~--~~l~~g~y~~~~~~~~arl~~ 207 (212)
T COG3531 164 RRLM-QRLGAAGFPTLALERNGTM--YVLGTGAYFGSPDAWLARLAQ 207 (212)
T ss_pred HHHH-HHhccCCCCeeeeeeCCce--EeccCCcccCCcHHHHHHHHH
Confidence 4577 8999999999999999884 333333 4577888888765
No 280
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.01 E-value=14 Score=26.45 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=33.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCc-------------H--HHHHHhcCCCCCCeEEEE
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-------------K--EYAKQKLQLGSFPTILFF 267 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-------------~--~l~~~~~~V~~~Pti~~~ 267 (295)
++|+|.-||.|..+...++.+ ++.+-.|++...- + +-. +.++--++|.++.=
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~v-k~~gyiGIPall~~ 71 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-------NVDYDFVEITESMANLKRFLHLRDSRPEFDEV-KSNGYIGIPALLTD 71 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-------CCCceeeehhhhhhhHHHHHhhhccchhHHhh-hhcCcccceEEEeC
Confidence 689999999998877777665 2444445544321 1 112 34566689987654
No 281
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=64.81 E-value=45 Score=24.05 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=34.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEE
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~ 266 (295)
+..|+.+.|+.|+...-.+... +-.+.+..++.......+. +......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~~~~~~~-~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKDKPDWFL-EKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCCCcHHHH-hhCCCCCcCEEEE
Confidence 5567788899999876555443 3235555666544323455 5556678999874
No 282
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=64.51 E-value=11 Score=25.92 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=32.8
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC---cHHHHHHhcCCCCCCeEE
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---~~~l~~~~~~V~~~Pti~ 265 (295)
..|+.+.|+.|+...-.+.+. +-.+....+|..+. ..++. +......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNLMKGEHLKPEFL-KLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecCccCCcCCHHHH-hhCcCCCCCEEE
Confidence 468899999999776655543 21344555554332 14555 555567899995
No 283
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=64.20 E-value=14 Score=28.39 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=24.9
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 247 (295)
+..|+.++|+.|+.....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCC
Confidence 4578899999999988777652 466666776554
No 284
>PRK12559 transcriptional regulator Spx; Provisional
Probab=64.13 E-value=13 Score=29.53 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=23.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 247 (295)
+..|+.++|+.|+.....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCeEEEEeeCC
Confidence 5678899999999977666542 356666665443
No 285
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=63.31 E-value=13 Score=30.78 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 249 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
...+ .+++|.++||+++ +|+ ..+.| ....+.|.+.|+
T Consensus 157 ~~~a-~~~gv~GvP~~vv--~g~---~~~~G-~~~~~~l~~~l~ 193 (193)
T PF01323_consen 157 TAEA-RQLGVFGVPTFVV--NGK---YRFFG-ADRLDELEDALQ 193 (193)
T ss_dssp HHHH-HHTTCSSSSEEEE--TTT---EEEES-CSSHHHHHHHH-
T ss_pred HHHH-HHcCCcccCEEEE--CCE---EEEEC-CCCHHHHHHHhC
Confidence 4556 7899999999999 554 45566 678888887763
No 286
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=62.18 E-value=17 Score=33.86 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=46.8
Q ss_pred hhcchhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCceec-CCc-ccc----ccCCCCCEEEEeeCCCCCHHHHHH
Q 022560 27 ECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQV-DPV-FEG----LEGGVGSLVKWNPVANVKGNDIWN 98 (295)
Q Consensus 27 ~c~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~~-~~~-~~~----~~~~~~~~~~~~Pi~~W~~~dvw~ 98 (295)
.|....|-.-|.+...++ +.++||--.++.. .+ .+..- |+. .+. ......-.-.++||.+++.+||-+
T Consensus 98 ~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~-~~---~L~rg~d~~kDqsy~l~~l~~~~l~~~i~PL~~~~K~eVr~ 173 (346)
T PRK00143 98 LCNKEIKFKAFLEYARELGADYIATGHYARIRD-GR---ELLRGVDPNKDQSYFLYQLTQEQLAKLLFPLGELTKPEVRE 173 (346)
T ss_pred hhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc-cc---eEEEccCCCcChhhhhccCCHHHhcceeccCccCCHHHHHH
Confidence 456656767777776655 4789998776641 11 11111 110 000 000000013789999999999999
Q ss_pred HHHHCCCCCC
Q 022560 99 FLRTMDVPIN 108 (295)
Q Consensus 99 y~~~~~~p~~ 108 (295)
|.+.++||+.
T Consensus 174 ~A~~~gl~~~ 183 (346)
T PRK00143 174 IAEEAGLPVA 183 (346)
T ss_pred HHHHcCCCcC
Confidence 9999999863
No 287
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=61.59 E-value=1.4e+02 Score=27.93 Aligned_cols=102 Identities=18% Similarity=0.250 Sum_probs=62.8
Q ss_pred CCCceecCcc-cHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCC
Q 022560 182 SQNLVTLNRT-GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 260 (295)
Q Consensus 182 ~~~v~~lt~~-~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~ 260 (295)
...|..++++ +++.+-+ . ...+.||-|+.+--+. ....|+++|+.|.. -|.|..+= + +.++ ++++++
T Consensus 145 edPVeiIn~~~e~~~Fe~-i-ed~~klIGyFk~~~s~---~yk~FeeAAe~F~p-~IkFfAtf---d-~~vA-k~L~lK- 212 (383)
T PF01216_consen 145 EDPVEIINNKHELKAFER-I-EDDIKLIGYFKSEDSE---HYKEFEEAAEHFQP-YIKFFATF---D-KKVA-KKLGLK- 212 (383)
T ss_dssp SSSEEEE-SHHHHHHHHH----SS-EEEEE-SSTTSH---HHHHHHHHHHHCTT-TSEEEEE----S-HHHH-HHHT-S-
T ss_pred ccchhhhcChhhhhhhhh-c-ccceeEEEEeCCCCcH---HHHHHHHHHHhhcC-ceeEEEEe---c-chhh-hhcCcc-
Confidence 3456666653 3333322 2 2356677777664222 34578899999987 67776553 3 7888 899997
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 022560 261 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 295 (295)
Q Consensus 261 ~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l~ 295 (295)
+=.+-+|.+=-..++...+.+.+.++|.+||++.+
T Consensus 213 ~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~ 247 (383)
T PF01216_consen 213 LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHK 247 (383)
T ss_dssp TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-
T ss_pred ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhc
Confidence 88888887765558888887889999999998753
No 288
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=61.56 E-value=8.3 Score=29.28 Aligned_cols=25 Identities=4% Similarity=0.231 Sum_probs=23.7
Q ss_pred EEeeCCCCCHHHHHHHHHHCCCCCC
Q 022560 84 KWNPVANVKGNDIWNFLRTMDVPIN 108 (295)
Q Consensus 84 ~~~Pi~~W~~~dvw~y~~~~~~p~~ 108 (295)
||+||+.=++.||-.|...+|||+.
T Consensus 3 rIRPL~~v~E~ei~~ya~~~~lp~~ 27 (104)
T TIGR00269 3 RIKPLRYIPEKEVVLYAFLNELKVH 27 (104)
T ss_pred cccccccCCHHHHHHHHHHcCCCcC
Confidence 7999999999999999999999975
No 289
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=61.03 E-value=16 Score=29.02 Aligned_cols=22 Identities=5% Similarity=0.294 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCC
Q 022560 249 KEYAKQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~~g~ 271 (295)
+.+. ++|+|+.+|++++.+++.
T Consensus 61 P~lF-~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 61 PQWF-KQFDITAVPAFVVVKDGL 82 (130)
T ss_pred hHHH-hhcCceEcCEEEEECCCC
Confidence 8888 999999999999998774
No 290
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=59.41 E-value=10 Score=31.55 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCCCccc---------cChhhhcchhchHHHHHHHhcC--CEEEEeeeccCCCcc------------c--
Q 022560 6 VEVQALVRSKGLFSFYE---------DGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGT------------R-- 60 (295)
Q Consensus 6 ~~~~~~~~~~~~~~~~~---------~~~~~c~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~------------R-- 60 (295)
..++++.+.+|+..... .....||+...-.-|.++..+. +.+++|-=.||. .. +
T Consensus 48 ~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~-~ET~l~~l~rg~~~~~l 126 (182)
T PF01171_consen 48 EFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQ-AETFLMNLLRGSGLRGL 126 (182)
T ss_dssp HHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHH-HHHHHHHHHHT--CCCC
T ss_pred HHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCcc-HHHHHHHHHHhccchhh
Confidence 45777888888633221 1233455544444566666555 478888665542 10 0
Q ss_pred CCCCceecCCccccccCCCCCEEEEeeCCCCCHHHHHHHHHHCCCCCCc
Q 022560 61 SEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINS 109 (295)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ 109 (295)
+.++... + ..+...++|++.-+.+||-.|...++||+..
T Consensus 127 ~~~~~~~--~--------~~~~~~iRPLl~~~k~ei~~~~~~~~i~~~~ 165 (182)
T PF01171_consen 127 AGMPPVS--P--------FKGIKLIRPLLYVSKDEIRAYAKENGIPYVE 165 (182)
T ss_dssp C-S-SEE--E--------ETTCEEE-GGGCS-HHHHHHHHHHTT-SSBS
T ss_pred ccccccc--c--------ccCcccCCcchhCCHHHHHHHHHHCCCcEEE
Confidence 1111111 0 0247889999999999999999999999854
No 291
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=58.41 E-value=1.3e+02 Score=26.55 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=43.6
Q ss_pred CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCC-hh-HHHHHHHHHHHHHHhcC---CCeEEEEEEcCCCcHHHHH--
Q 022560 181 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWC-QF-CQAMEGSYVELADKLAG---NGVKVGKFRADGDQKEYAK-- 253 (295)
Q Consensus 181 ~~~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC-~~-C~~~~p~~~~la~~~~~---~~v~~~~vd~~~~~~~l~~-- 253 (295)
..+....|++.+-+-+-. -+++|-|.+|.+-- +. =..+.+.+.++-++|+. .+|.+-.||-+.+ ++..+
T Consensus 5 T~~k~ysLS~~T~~~L~~---L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~-~~~~~~~ 80 (271)
T PF09822_consen 5 TANKRYSLSDQTKKVLKS---LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN-PSEAEEK 80 (271)
T ss_pred CCCCCccCCHHHHHHHHh---CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC-hHHHHHH
Confidence 345566777766444332 34577776665541 11 23444555555555543 2799999998666 55551
Q ss_pred -HhcCCCC
Q 022560 254 -QKLQLGS 260 (295)
Q Consensus 254 -~~~~V~~ 260 (295)
.+++|..
T Consensus 81 ~~~~Gi~~ 88 (271)
T PF09822_consen 81 AKEYGIQP 88 (271)
T ss_pred HHhcCCCc
Confidence 3477765
No 292
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=57.62 E-value=14 Score=29.02 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 249 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
..++ .+++|.++||+++ +|+ .+.| ..+.+.|.+.|+
T Consensus 119 ~~~~-~~~gi~gtPt~~v--~g~----~~~G-~~~~~~l~~~i~ 154 (154)
T cd03023 119 RQLA-RALGITGTPAFII--GDT----VIPG-AVPADTLKEAID 154 (154)
T ss_pred HHHH-HHcCCCcCCeEEE--CCE----EecC-CCCHHHHHHHhC
Confidence 4566 7899999999877 343 3455 788888887763
No 293
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.89 E-value=34 Score=29.69 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=29.2
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEE
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 243 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd 243 (295)
.+.+++.|....|++|+...+.+.+........++.+..+.
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~~ 124 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREFP 124 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEee
Confidence 37899999999999998888888885555444233444333
No 294
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.62 E-value=60 Score=30.62 Aligned_cols=81 Identities=10% Similarity=0.186 Sum_probs=56.9
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 281 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~ 281 (295)
.+..-+=-|++-.|..|-.....++-++-... ++....||-.-. ++-. ..-+|.++||+++ +|+. |..|.
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp--~I~H~~IdGa~F-q~Ev-ear~IMaVPtvfl--nGe~----fg~GR 184 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNP--RIKHTAIDGALF-QDEV-EARNIMAVPTVFL--NGEE----FGQGR 184 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCC--CceeEEecchhh-HhHH-HhccceecceEEE--cchh----hcccc
Confidence 45667778889999999888777766554433 599999997766 4444 5568999999765 5652 23346
Q ss_pred CCHHHHHHHHH
Q 022560 282 RDVDSLMAFVD 292 (295)
Q Consensus 282 ~~~e~l~~fi~ 292 (295)
++.++|..-|.
T Consensus 185 mtleeilaki~ 195 (520)
T COG3634 185 MTLEEILAKID 195 (520)
T ss_pred eeHHHHHHHhc
Confidence 78887776554
No 295
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=53.87 E-value=18 Score=30.47 Aligned_cols=61 Identities=18% Similarity=0.313 Sum_probs=39.0
Q ss_pred hHHHHHHHhc--CCEEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCC--CCCHHHHHHHHHHCCCCC
Q 022560 34 VRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA--NVKGNDIWNFLRTMDVPI 107 (295)
Q Consensus 34 ~~pl~~~l~~--~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~--~W~~~dvw~y~~~~~~p~ 107 (295)
..-+.+..++ ..++++|...+|.-..|..+..+ . ..--++||+ .++..||.+|.++.|||+
T Consensus 84 ~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~~~~~~--~-----------~~~iirPL~~~~~~K~ei~~~a~~~gl~~ 148 (202)
T cd01990 84 YEALKEIAEELGLDVVLDGTNADDLGDYRPGLKAL--R-----------ELGVRSPLAEAGLGKAEIRELARELGLPT 148 (202)
T ss_pred HHHHHHHHHHCCCCEEEEcCccccCcccChHHHHH--H-----------HcCCcCchhhcCCCHHHHHHHHHHcCCCC
Confidence 3334443443 35899998887752222111110 0 122589999 599999999999999988
No 296
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=52.91 E-value=29 Score=28.60 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=30.8
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEc
Q 022560 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA 244 (295)
Q Consensus 206 vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~ 244 (295)
.|..|+..-||.|-...+.+.++.+.+.+-.|.+.-+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 478899999999999999999999999552444444443
No 297
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=52.79 E-value=27 Score=27.67 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=23.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 247 (295)
+..|+.++|+.|+.....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEECCCC
Confidence 4578889999999977665442 466666666543
No 298
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=52.32 E-value=10 Score=34.09 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=44.7
Q ss_pred cchhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCceecCC----ccccccCCCCCE-EEEeeCCCCCHHHHHHHHH
Q 022560 29 CRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDP----VFEGLEGGVGSL-VKWNPVANVKGNDIWNFLR 101 (295)
Q Consensus 29 ~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~~~~----~~~~~~~~~~~~-~~~~Pi~~W~~~dvw~y~~ 101 (295)
|+...-.-|.++..++ +.+++|-=+||.. .-..+.++.-+. ..........+. ..++|++.++..+|..|..
T Consensus 104 c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~-et~lm~l~~g~~~~~l~~~~~~~~~~~~~~~iRPL~~~~~~ei~~~~~ 182 (298)
T COG0037 104 CRRLRRGLLYKIAKELGADKIATGHHLDDQA-ETFLMNLLRGSGLRGLRGMPPKRPFEGGLLIIRPLLYVREKEIELYAK 182 (298)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEeccCcHHHH-HHHHHHHHcCcHhhHHhhCCcccccCCCCeeeeecccCCHHHHHHHHH
Confidence 3444445556666655 5888887777652 211111111110 000000011223 7999999999999999999
Q ss_pred HCCCCC
Q 022560 102 TMDVPI 107 (295)
Q Consensus 102 ~~~~p~ 107 (295)
.++||+
T Consensus 183 ~~~l~~ 188 (298)
T COG0037 183 EKGLPY 188 (298)
T ss_pred HcCCCE
Confidence 999975
No 299
>PRK08349 hypothetical protein; Validated
Probab=51.79 E-value=14 Score=31.29 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=34.7
Q ss_pred CCEEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCCCCCHHHHHHHHHHCCCC
Q 022560 44 LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVP 106 (295)
Q Consensus 44 ~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~y~~~~~~p 106 (295)
++.+++|-..+|. ..-..+.....+. ..+.-.++|+++++.+||..|.+.+|++
T Consensus 106 ~~~I~tG~~~~d~-a~~~l~nl~~~~~--------~~~i~i~rPL~~~~K~eI~~~a~~~g~~ 159 (198)
T PRK08349 106 ASAIITGDSLGQV-ASQTLDNLMVIST--------ATDLPVLRPLIGLDKEEIVKIAKEIGTF 159 (198)
T ss_pred CCEEEEecCCchH-HHHHHHHHhcccc--------ccCCeEEcCCCCCCHHHHHHHHHHcCCh
Confidence 3589999777663 1211111111111 1234578899999999999999999954
No 300
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=50.83 E-value=1.1e+02 Score=23.54 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=49.0
Q ss_pred EEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcH-----------HHHHHhcCCC--CCCeEEEEeCCC
Q 022560 206 WLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK-----------EYAKQKLQLG--SFPTILFFPKHS 271 (295)
Q Consensus 206 vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~-----------~l~~~~~~V~--~~Pti~~~~~g~ 271 (295)
+||.|- ++--+.=+.....+.+....+....+.++.+--+.... .+. ++|++. ++-.+++=++|+
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~~~~f~~vLiGKDG~ 90 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIPPGGFTVVLIGKDGG 90 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCCCCceEEEEEeCCCc
Confidence 344343 33444455555566554445555567776663332212 666 788864 333344446666
Q ss_pred CCeeecCCCCCCHHHHHHHHHHh
Q 022560 272 SKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 272 ~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
. ...+.. +.+.++|.+.|+++
T Consensus 91 v-K~r~~~-p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 91 V-KLRWPE-PIDPEELFDTIDAM 111 (118)
T ss_pred E-EEecCC-CCCHHHHHHHHhCC
Confidence 3 444554 89999999999864
No 301
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=49.51 E-value=46 Score=26.84 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=45.2
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCC----CCCeEEEEeCCCCCeeecCCC
Q 022560 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG----SFPTILFFPKHSSKPIKYPSE 280 (295)
Q Consensus 205 ~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~----~~Pti~~~~~g~~~~~~~~gg 280 (295)
.-++.|++|.|+=|..-...++ .+++.+-.+..++- ..+- ++++|. +==|. .-+|. .+ .|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~d~-~alK-~~~gIp~e~~SCHT~--VI~Gy--~v--EG- 89 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETDDF-LALK-RRLGIPYEMQSCHTA--VINGY--YV--EG- 89 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecCcH-HHHH-HhcCCChhhccccEE--EEcCE--EE--ec-
Confidence 4578899999999987555443 22577777776665 4555 778774 22222 22343 22 23
Q ss_pred CCCHHHHHHHHHH
Q 022560 281 RRDVDSLMAFVDA 293 (295)
Q Consensus 281 ~~~~e~l~~fi~~ 293 (295)
-.-++.|..|+++
T Consensus 90 HVPa~aI~~ll~~ 102 (149)
T COG3019 90 HVPAEAIARLLAE 102 (149)
T ss_pred cCCHHHHHHHHhC
Confidence 5677888887753
No 302
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=49.16 E-value=29 Score=30.64 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=33.7
Q ss_pred CCEEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCCC--CCHHHHHHHHHHCCCCCC
Q 022560 44 LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN--VKGNDIWNFLRTMDVPIN 108 (295)
Q Consensus 44 ~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~--W~~~dvw~y~~~~~~p~~ 108 (295)
+..+++|.-.+|-...|..+.... +.+ -++|+++ ++..||.+|.++.|||+.
T Consensus 108 ~~~I~~G~n~dD~~~~rpg~~a~~----------~~~---~~~PL~~~~l~K~eIr~la~~~gl~~~ 161 (252)
T TIGR00268 108 YDVVVDGTNADDLFDHRPGYRAVK----------EFN---GVSPWAEFGITKKEIREIAKSLGISFP 161 (252)
T ss_pred CCEEEECCCCcccccccHHHHHHH----------HcC---CCCcchhcCCCHHHHHHHHHHcCCCcc
Confidence 458999987777422222111111 001 1399975 899999999999999864
No 303
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=49.02 E-value=19 Score=30.01 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=16.1
Q ss_pred CCCcEEEEEEC-CCChhHHH----HHHHHHHHHH
Q 022560 202 RQEPWLVVLYA-PWCQFCQA----MEGSYVELAD 230 (295)
Q Consensus 202 ~~k~vvV~Fya-~wC~~C~~----~~p~~~~la~ 230 (295)
.+++||++||- ..-|-|-. ++..++++.+
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk 122 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK 122 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHhh
Confidence 56789999992 22233333 4445555544
No 304
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=48.84 E-value=27 Score=29.09 Aligned_cols=36 Identities=11% Similarity=0.270 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 249 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
...+ .+.+|.++||+++ +|+ ....| ..+.+.|.+.|
T Consensus 165 ~~~a-~~~gv~G~Pt~vv--~g~---~~~~G-~~~~~~~~~~i 200 (201)
T cd03024 165 EARA-RQLGISGVPFFVF--NGK---YAVSG-AQPPEVFLQAL 200 (201)
T ss_pred HHHH-HHCCCCcCCEEEE--CCe---EeecC-CCCHHHHHHHh
Confidence 4556 7889999999998 444 23455 68888887765
No 305
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=48.52 E-value=26 Score=33.20 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=25.9
Q ss_pred CEEEEeeCCCC---CHHHHHHHHHHCCCCCCc
Q 022560 81 SLVKWNPVANV---KGNDIWNFLRTMDVPINS 109 (295)
Q Consensus 81 ~~~~~~Pi~~W---~~~dvw~y~~~~~~p~~~ 109 (295)
+.-.+.|+.+| +.+||-+|.+++|||+.-
T Consensus 134 el~ViaPlre~~~~sr~ev~~~A~~~Gip~~~ 165 (385)
T cd01999 134 DLKIIAPWRDWEFLSREEEIEYAEEHGIPVPV 165 (385)
T ss_pred CCEEEcchhhhhcCCHHHHHHHHHHcCCCCcc
Confidence 45688999999 999999999999999853
No 306
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=48.00 E-value=91 Score=28.71 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=58.9
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHHH-HHHHHHhcC--CCeEEEEEEcCCCcHHHHHHhcC--
Q 022560 183 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY-VELADKLAG--NGVKVGKFRADGDQKEYAKQKLQ-- 257 (295)
Q Consensus 183 ~~v~~lt~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~~-~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~-- 257 (295)
+-|.++|=+|-+++.. ++.|.+|+|+.+--.... ..| ..+++++.+ ..|.++..|+..- ..-. ..++
T Consensus 210 pLVREiTFeN~EELtE---EGlPflILf~~kdD~~s~---k~F~~aI~ReL~~e~~~in~l~ADG~~f-~hpL-~HlgKs 281 (375)
T KOG0912|consen 210 PLVREITFENAEELTE---EGLPFLILFRKKDDKESE---KIFKNAIARELDDETLAINFLTADGKVF-KHPL-RHLGKS 281 (375)
T ss_pred hhhhhhhhccHHHHhh---cCCceEEEEecCCcccHH---HHHHHHHHHHhhhhhhccceeecCccee-cchH-HHhCCC
Confidence 4577888888888876 899999999988754432 233 446666655 3488888888765 2222 2332
Q ss_pred --------CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 258 --------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 258 --------V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
|.++=.+++|..++. ...+..|.+|+..|
T Consensus 282 ~~DLPviaIDsF~Hmylfp~f~d--------i~~pGkLkqFv~DL 318 (375)
T KOG0912|consen 282 PDDLPVIAIDSFRHMYLFPDFND--------INIPGKLKQFVADL 318 (375)
T ss_pred cccCcEEEeeccceeeecCchhh--------hcCccHHHHHHHHH
Confidence 333444445555431 23344677777654
No 307
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=47.56 E-value=20 Score=25.78 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=20.2
Q ss_pred CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 022560 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 260 ~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
.-|++++++..++......-...+.++|.+||++
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 4699999985544333333346899999999976
No 308
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=46.99 E-value=35 Score=27.66 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.3
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCC
Q 022560 249 KEYAKQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~~g~ 271 (295)
...+ .+++|.++||+++ +|+
T Consensus 133 ~~~~-~~~gi~gTPt~iI--nG~ 152 (178)
T cd03019 133 EKLA-KKYKITGVPAFVV--NGK 152 (178)
T ss_pred HHHH-HHcCCCCCCeEEE--CCE
Confidence 4566 7899999999998 555
No 309
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=46.31 E-value=90 Score=23.06 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=27.1
Q ss_pred EECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHH
Q 022560 210 LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEY 251 (295)
Q Consensus 210 Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l 251 (295)
+|.+.+..-++....=+.+...+...+|.|-.+|++.+ ++.
T Consensus 4 vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d-~~~ 44 (92)
T cd03030 4 VYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN-EEN 44 (92)
T ss_pred EEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC-HHH
Confidence 33344455666666666666666666799999999876 443
No 310
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=45.57 E-value=29 Score=28.69 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=25.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAG 234 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~ 234 (295)
|.+|+-+.||.|-...+.+.++.+.+..
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6788999999999999999999999843
No 311
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=44.34 E-value=41 Score=25.96 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCC--CCCCeEEEEeCCCC--CeeecCCC--CCCHHHHH
Q 022560 215 CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL--GSFPTILFFPKHSS--KPIKYPSE--RRDVDSLM 288 (295)
Q Consensus 215 C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V--~~~Pti~~~~~g~~--~~~~~~gg--~~~~e~l~ 288 (295)
|++|..+...+...-.-- + .+.+.+|+.......+. ...+- ++.|++++=..... ....+.|. .-+.+.|.
T Consensus 24 Cp~c~~iEGlLa~~P~l~-~-~ldV~rV~f~RPR~~vi-~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~ 100 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLR-E-RLDVRRVDFPRPRQAVI-ALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRIL 100 (112)
T ss_pred CCchHHHHhHHhhChhhh-h-cccEEEeCCCCchHHHH-HHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHH
Confidence 999998877665433222 2 58999999998745555 55543 68999888654321 01111110 23567777
Q ss_pred HHHHH
Q 022560 289 AFVDA 293 (295)
Q Consensus 289 ~fi~~ 293 (295)
.+|.+
T Consensus 101 ~~La~ 105 (112)
T PF11287_consen 101 RYLAE 105 (112)
T ss_pred HHHHH
Confidence 77654
No 312
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=44.27 E-value=87 Score=26.18 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=47.4
Q ss_pred hHHHHHHHhcCCEEEEeeeccCCCcccCCCCceecCCcc---cc--ccCCCCCEEEEeeCCCCCHHHHHHHHHHCCCCCC
Q 022560 34 VRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVF---EG--LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPIN 108 (295)
Q Consensus 34 ~~pl~~~l~~~~~~~~G~R~~es~~~R~~~~~~~~~~~~---~~--~~~~~~~~~~~~Pi~~W~~~dvw~y~~~~~~p~~ 108 (295)
+..+++||.+.+-++.++=.++. ++.....+....+. .. +..|-.-.+.+.||.++.+.+||-..-++.+|
T Consensus 20 l~vi~~al~~vDeliI~iGSa~~--~~t~~nPfTagER~~mi~~~L~~~~~~~r~~~~~v~d~~~n~i~v~~v~~~~p-- 95 (172)
T COG1056 20 LYVIKRALSKVDELIIVIGSAQE--SHTLKNPFTAGERIPMIRDRLREAGLDLRVYLRPVFDIEYNDIWVAYVEDLVP-- 95 (172)
T ss_pred HHHHHHHHHhCCEEEEEEccCcc--cccccCCCCccchhHHHHHHHHhcCCCceEEEEecCccccchhhHHHHhhcCC--
Confidence 56789999999966666656653 34444333322110 00 11222226789999999999999855555554
Q ss_pred ccccCCcc
Q 022560 109 SLHSQGYI 116 (295)
Q Consensus 109 ~ly~~g~~ 116 (295)
-|+.||+
T Consensus 96 -~~~~~~~ 102 (172)
T COG1056 96 -PFDVVYT 102 (172)
T ss_pred -CccccCC
Confidence 4666665
No 313
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=43.84 E-value=45 Score=27.68 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=39.4
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC
Q 022560 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG 246 (295)
Q Consensus 202 ~~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~ 246 (295)
+++.+||.=-|+.|+.-..--..|..|.+.|++.++.++..-|.+
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 689999999999999988667799999999988789999888865
No 314
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=43.37 E-value=24 Score=32.20 Aligned_cols=36 Identities=8% Similarity=0.222 Sum_probs=31.5
Q ss_pred EEEeeCCCCCHHHHHHHHHHCCCCCCccccCCcccc
Q 022560 83 VKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI 118 (295)
Q Consensus 83 ~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~si 118 (295)
--+.||++.+.+||-++.+..|||..-++++-|+..
T Consensus 142 ~vi~PL~~l~K~EVR~lar~lGLp~~~~~~~Pfp~p 177 (295)
T cd01997 142 KLIEPLRDLFKDEVRELGRELGLPEEIVERHPFPGP 177 (295)
T ss_pred CcccccccCcHHHHHHHHHHcCCCchhhCCCCCCCC
Confidence 358999999999999999999999987788777763
No 315
>PRK00509 argininosuccinate synthase; Provisional
Probab=43.14 E-value=79 Score=30.17 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=39.9
Q ss_pred hHHHHHHHhcC--CEEEEeeec--cCCCcccCCCCceecCCccccccCCCCCEEEEeeCCCC---CHHHHHHHHHHCCCC
Q 022560 34 VRPLRRALKGL--RAWITGQRK--DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV---KGNDIWNFLRTMDVP 106 (295)
Q Consensus 34 ~~pl~~~l~~~--~~~~~G~R~--~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W---~~~dvw~y~~~~~~p 106 (295)
..-|.++.++. .++.+|.-. ++. .|-...+.-.+ |+.--+.|+.+| +.+|+-+|.+++|||
T Consensus 98 ~~~l~~~A~~~G~~~IA~G~t~kGnDq--~rf~~g~~al~----------pel~VisPlre~~~~tK~eir~~A~~~Gip 165 (399)
T PRK00509 98 AKKLVEIARKEGADAVAHGCTGKGNDQ--VRFELGIAALA----------PDLKVIAPWREWDLKSREELIAYAEEHGIP 165 (399)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCH--HHHHHHHHHhC----------CCCeeecchhhcCCCCHHHHHHHHHHcCCC
Confidence 45555555444 488888754 321 23211111122 234577899999 999999999999999
Q ss_pred CC
Q 022560 107 IN 108 (295)
Q Consensus 107 ~~ 108 (295)
..
T Consensus 166 v~ 167 (399)
T PRK00509 166 IP 167 (399)
T ss_pred CC
Confidence 84
No 316
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=42.19 E-value=17 Score=33.46 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=24.9
Q ss_pred CCC-CccccCCccccCCCCCCCCCCCCccccccc
Q 022560 105 VPI-NSLHSQGYISIGCEPCTRPVLPGQHEREGR 137 (295)
Q Consensus 105 ~p~-~~ly~~g~~sigc~~ct~~~~~~~~~r~gr 137 (295)
+|. .+++..=|++.||.+|.+|..+.+.++.+|
T Consensus 274 ip~~~ev~p~pf~t~gC~~cnRP~~n~~~e~p~r 307 (339)
T COG2516 274 IPKVMEVPPSPFRTRGCPGCNRPYPNFMFELPGR 307 (339)
T ss_pred cccccCCCccccccCCCCCCCCCCcchHhhccCC
Confidence 444 455555789999999999988766677776
No 317
>PRK00919 GMP synthase subunit B; Validated
Probab=41.66 E-value=21 Score=32.70 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=31.1
Q ss_pred EEEEeeCCCCCHHHHHHHHHHCCCCCCccccCCccc
Q 022560 82 LVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYIS 117 (295)
Q Consensus 82 ~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~s 117 (295)
+--+.||.+++..||.+|.+.+|||+.-++..-|+.
T Consensus 154 ~~Ii~PL~~l~K~EVr~la~~lGLp~~~~~r~p~~~ 189 (307)
T PRK00919 154 LKIVEPLRDLYKDEVREVARALGLPEEISERMPFPG 189 (307)
T ss_pred CCcccCchhCcHHHHHHHHHHcCCChhhhCCCCCCC
Confidence 347899999999999999999999997777776665
No 318
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=40.97 E-value=40 Score=22.71 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=31.8
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHhcCCCCCCeEEE
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~---~~~~l~~~~~~V~~~Pti~~ 266 (295)
..|+.+.|+.|+...-.+... +-.+....+|... ....+. +......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----~~~~~~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL-----GIPYEWVEVDILKGETRTPEFL-ALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc-----CCCcEEEEecCCCcccCCHHHH-HhCCCCCCCEEEE
Confidence 467889999999876555543 2134455555422 113444 4445668999864
No 319
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=39.80 E-value=50 Score=31.03 Aligned_cols=22 Identities=5% Similarity=0.140 Sum_probs=20.7
Q ss_pred EeeCCCCCHHHHHHHHHHCCCC
Q 022560 85 WNPVANVKGNDIWNFLRTMDVP 106 (295)
Q Consensus 85 ~~Pi~~W~~~dvw~y~~~~~~p 106 (295)
++||.+++.+||-++.++.+++
T Consensus 160 ifPLg~~~K~eVr~~A~~~gl~ 181 (360)
T PRK14665 160 LLPMGGMTKSEARAYAAERGFE 181 (360)
T ss_pred eccCcCCCHHHHHHHHHHCCCC
Confidence 7999999999999999999974
No 320
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=38.83 E-value=24 Score=33.97 Aligned_cols=28 Identities=4% Similarity=0.029 Sum_probs=25.4
Q ss_pred EEEEeeCCCCCHHHHHHHHHHCCCCCCc
Q 022560 82 LVKWNPVANVKGNDIWNFLRTMDVPINS 109 (295)
Q Consensus 82 ~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ 109 (295)
...++|+++.+.+||.+|...++||+..
T Consensus 152 ~~liRPLL~~~k~ei~~ya~~~~l~~~~ 179 (436)
T PRK10660 152 TRLIRPLLARSREELEQYAQAHGLRWIE 179 (436)
T ss_pred CcEeCCCccCCHHHHHHHHHHcCCCEEE
Confidence 4579999999999999999999999754
No 321
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=38.10 E-value=53 Score=27.92 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.3
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCC
Q 022560 249 KEYAKQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~~g~ 271 (295)
.... ++++|+++||+++ +|+
T Consensus 157 ~~~a-~~~gI~gtPtfiI--nGk 176 (207)
T PRK10954 157 EKAA-ADLQLRGVPAMFV--NGK 176 (207)
T ss_pred HHHH-HHcCCCCCCEEEE--CCE
Confidence 4556 7899999999998 565
No 322
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=37.48 E-value=40 Score=28.46 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=23.9
Q ss_pred EEEEeeCCCCCHHHHHHHHHHCC---CCCCc
Q 022560 82 LVKWNPVANVKGNDIWNFLRTMD---VPINS 109 (295)
Q Consensus 82 ~~~~~Pi~~W~~~dvw~y~~~~~---~p~~~ 109 (295)
+--++|+++++-.||-++.+++| +|+.+
T Consensus 150 ~~i~~Pl~~~~K~eI~~la~~~g~~~~~~~~ 180 (201)
T TIGR00364 150 VKIRAPLMDLTKAEIVQLADELGVLDLVIKL 180 (201)
T ss_pred eEEEECCcCCCHHHHHHHHHHcCCccccHhh
Confidence 45589999999999999999999 76433
No 323
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=37.06 E-value=51 Score=28.56 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 022560 249 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~l 294 (295)
..+. .+++|.++||+++-.. .+.| ..+.++|.+.|...
T Consensus 205 ~~~a-~~~gv~gTPt~~v~~~------~~~g-~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLA-QQLGVNGTPTFIVNGK------LVPG-LPDLDELKAIIDEA 242 (244)
T ss_pred HHHH-HhcCCCcCCeEEECCe------eecC-CCCHHHHHHHHHHh
Confidence 4566 7899999999988643 3455 57789999888764
No 324
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=36.16 E-value=49 Score=28.99 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=46.9
Q ss_pred cCCEEEEeeeccCCCcccCCCCceecCCccccc-cCC-CCCEEEEeeCCCCCHHHHHHHHHHCC-CCC-----CccccCC
Q 022560 43 GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGL-EGG-VGSLVKWNPVANVKGNDIWNFLRTMD-VPI-----NSLHSQG 114 (295)
Q Consensus 43 ~~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~-~~~-~~~~~~~~Pi~~W~~~dvw~y~~~~~-~p~-----~~ly~~g 114 (295)
+++.++.|+=.+|...-|-..+-|- +. ++.. ..| ..++--.-|+++|+-.||+..-++.| +|+ ++.|.-+
T Consensus 115 g~~~I~~G~n~~D~~~YpDcr~~Fi-~A-~~~~~~~~~~~~i~I~aPl~~lsK~eI~~l~~~lg~v~~~~~~T~SCy~g~ 192 (231)
T PRK11106 115 KAEAVITGVCETDFSGYPDCRDEFV-KA-LNHAVSLGMAKDIRFETPLMWLNKAETWALADYYGQLDLVRHETLTCYNGI 192 (231)
T ss_pred CCCEEEEeeccCcCCCCCCCCHHHH-HH-HHHHHHhccCCCcEEEecCCCCCHHHHHHHHHHcCCcccccCceeeccCcC
Confidence 3458999998877322333321111 00 0000 000 01355668999999999999999999 988 6667742
Q ss_pred ccccCCCCCCC
Q 022560 115 YISIGCEPCTR 125 (295)
Q Consensus 115 ~~sigc~~ct~ 125 (295)
..-+|-.|..
T Consensus 193 -~g~~CG~C~s 202 (231)
T PRK11106 193 -KGDGCGHCAA 202 (231)
T ss_pred -CCCCCCCCHH
Confidence 1126666644
No 325
>PRK00074 guaA GMP synthase; Reviewed
Probab=35.77 E-value=25 Score=34.63 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=32.1
Q ss_pred EEEEeeCCCCCHHHHHHHHHHCCCCCCccccCCccc
Q 022560 82 LVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYIS 117 (295)
Q Consensus 82 ~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~s 117 (295)
.-.+.||++.+.+||-+|.+.+|||++-.+++-|+.
T Consensus 356 ~~ii~PL~~l~K~EIr~~a~~~gLp~~~~~~~p~p~ 391 (511)
T PRK00074 356 LKLVEPLRELFKDEVRKLGLELGLPEEIVYRHPFPG 391 (511)
T ss_pred cccccchhhcCHHHHHHHHHHcCCCHHHhCCCCCCC
Confidence 348899999999999999999999998888887665
No 326
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=35.15 E-value=51 Score=25.35 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=22.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG 246 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~ 246 (295)
+..|+.|.|..|+.....+++- ++.|-.+|.-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEeehhc
Confidence 4578899999999877666442 35555555443
No 327
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=34.99 E-value=73 Score=27.44 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 022560 249 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 286 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~ 286 (295)
+.+. ++|+|+.+|++++..... .....| ..+...
T Consensus 152 P~lF-~~F~I~~VPafVv~C~~~--yD~I~G-NIsl~~ 185 (212)
T PRK13730 152 PTLF-SQYGIRSVPALVVFCSQG--YDIIRG-NLRVGQ 185 (212)
T ss_pred HHHH-HhcCCccccEEEEEcCCC--CCEEEe-cccHHH
Confidence 7888 999999999999986543 333344 455443
No 328
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=34.50 E-value=6 Score=26.74 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=7.9
Q ss_pred CCCCCHHHHHHHHHHCCCCCCccccCC
Q 022560 88 VANVKGNDIWNFLRTMDVPINSLHSQG 114 (295)
Q Consensus 88 i~~W~~~dvw~y~~~~~~p~~~ly~~g 114 (295)
|+.|.+-+|-.+.++.|+||.+|=..|
T Consensus 23 LFEw~yP~lA~~cr~kg~pYP~Lde~G 49 (57)
T PF12105_consen 23 LFEWGYPVLAKWCRRKGLPYPPLDEDG 49 (57)
T ss_dssp HHHHHHHHH------------------
T ss_pred HHcccCHHHHhhccccccccccccccc
Confidence 578999999999999999999987776
No 329
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=34.34 E-value=36 Score=31.22 Aligned_cols=36 Identities=8% Similarity=0.233 Sum_probs=30.6
Q ss_pred EEEEeeCCCCCHHHHHHHHHHCCCCCCccccCCccc
Q 022560 82 LVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYIS 117 (295)
Q Consensus 82 ~~~~~Pi~~W~~~dvw~y~~~~~~p~~~ly~~g~~s 117 (295)
.-.+.||++.+..||..|.+.+|||.+-.+++=|..
T Consensus 156 ~~ii~PL~~l~K~EVr~la~~lgLp~~~~~~~Pf~~ 191 (311)
T TIGR00884 156 LKLVEPLRELFKDEVRKLGKELGLPEEIVWRHPFPG 191 (311)
T ss_pred CceEEEcccCcHHHHHHHHHHcCCCHHHhhCCCCCC
Confidence 337899999999999999999999987777775544
No 330
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=33.20 E-value=2.6e+02 Score=24.30 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 022560 214 WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 293 (295)
Q Consensus 214 wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~~ 293 (295)
.|+.|+.+.-.+. .++..+.+-.||.... ++-..+-..-..+|- +.|+..- ..+.+.|.+||++
T Consensus 20 dcpf~qr~~m~L~-----~k~~~f~vttVd~~~k-p~~f~~~sp~~~~P~-l~~d~~~---------~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LKGVPFKVTTVDLSRK-PEWFLDISPGGKPPV-LKFDEKW---------VTDSDKIEEFLEE 83 (221)
T ss_pred CChhHHHHHHHHH-----HcCCCceEEEeecCCC-cHHHHhhCCCCCCCe-EEeCCce---------eccHHHHHHHHHH
Confidence 4888887766665 2333578888998887 444413333444454 4443211 3456677777765
No 331
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=32.32 E-value=1.5e+02 Score=25.63 Aligned_cols=83 Identities=10% Similarity=0.126 Sum_probs=50.4
Q ss_pred CCcEEEEEE-----CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHhcC
Q 022560 203 QEPWLVVLY-----APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQ 257 (295)
Q Consensus 203 ~k~vvV~Fy-----a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~ 257 (295)
...+|..|. ..-|+.|-.+...+.-....+...++.|+.|.-.-. +.++. ..|+
T Consensus 68 ~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs~Fn-~D~~ 146 (211)
T PF05988_consen 68 RQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGSDFN-YDFG 146 (211)
T ss_pred ceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCCccc-cccc
Confidence 344555555 567999999999996666666654688888864322 01223 3556
Q ss_pred C-----CCCCeEEEE-eCCCCCeeecCCCCCCHHH
Q 022560 258 L-----GSFPTILFF-PKHSSKPIKYPSERRDVDS 286 (295)
Q Consensus 258 V-----~~~Pti~~~-~~g~~~~~~~~gg~~~~e~ 286 (295)
+ ...|.+-+| ++|+.+...|....+-.+.
T Consensus 147 ~~~~~~~~~~g~svF~Rdg~~VfhTyst~~RG~e~ 181 (211)
T PF05988_consen 147 VSFDEGGEMPGLSVFLRDGGRVFHTYSTYGRGGER 181 (211)
T ss_pred ceeccCCCceeEEEEEEcCCEEEEEeecCCCCchh
Confidence 5 467777766 5666555556543343333
No 332
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=32.23 E-value=85 Score=21.37 Aligned_cols=71 Identities=8% Similarity=0.023 Sum_probs=40.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD 283 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~---~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~ 283 (295)
+..|+.+.|+.|+...-.+....- .+.+..++... ....+. +......+|++.. +|. . ...
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i-----~~~~~~~~~~~~~~~~~~~~-~~~P~~~vP~l~~--~g~--~------l~e 65 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV-----DYELVPVDLTKGEHKSPEHL-ARNPFGQIPALED--GDL--K------LFE 65 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC-----CcEEEEeCccccccCCHHHH-hhCCCCCCCEEEE--CCE--E------EEc
Confidence 456667779999887765554321 24445555431 114555 5566788998752 332 1 134
Q ss_pred HHHHHHHHHH
Q 022560 284 VDSLMAFVDA 293 (295)
Q Consensus 284 ~e~l~~fi~~ 293 (295)
...|..+|.+
T Consensus 66 s~aI~~yL~~ 75 (76)
T cd03053 66 SRAITRYLAE 75 (76)
T ss_pred HHHHHHHHhh
Confidence 4667777653
No 333
>PRK14561 hypothetical protein; Provisional
Probab=31.22 E-value=93 Score=26.28 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=35.6
Q ss_pred hcCCEEEEeeeccCCCcccCCCCceecCCccccccCCCCCEEEEeeCCCCCHHHHHHHHHHC
Q 022560 42 KGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTM 103 (295)
Q Consensus 42 ~~~~~~~~G~R~~es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dvw~y~~~~ 103 (295)
.+++.+++|..+|+. ..-...+...-- .+..++--++||+.++..||..+.+++
T Consensus 93 ~g~~~Ia~G~n~DD~-~et~~r~~~~a~-------~~~~gi~iirPL~~~~K~eI~~la~~l 146 (194)
T PRK14561 93 EEYDVIADGTRRDDR-VPKLSRSEIQSL-------EDRKGVQYIRPLLGFGRKTIDRLVERL 146 (194)
T ss_pred cCCCEEEEEecCCCc-chhccHHHHhhh-------hcCCCcEEEeeCCCCCHHHHHHHHHhh
Confidence 566789999999985 321122221100 011245568999999999999999874
No 334
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=30.60 E-value=74 Score=23.92 Aligned_cols=57 Identities=11% Similarity=0.216 Sum_probs=34.7
Q ss_pred EECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCC--CCCeEEEE-eCCC
Q 022560 210 LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--SFPTILFF-PKHS 271 (295)
Q Consensus 210 Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~--~~Pti~~~-~~g~ 271 (295)
||-..|+-|......+.... ....+.|+.+.-... .++. +.+++. ..-+.++. .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d---~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD---RGGRLRFVDIQSEPD-QALL-ASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC---CCCCEEEEECCChhh-hhHH-HhcCcCHHHHcCeeEEecCCC
Confidence 78999999999887776661 112577766633333 4444 455653 44555554 4554
No 335
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=30.09 E-value=41 Score=26.56 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHCCCCCCcccc
Q 022560 92 KGNDIWNFLRTMDVPINSLHS 112 (295)
Q Consensus 92 ~~~dvw~y~~~~~~p~~~ly~ 112 (295)
+...+-+++.+|+|||+.||-
T Consensus 65 ~~~~t~~wL~k~~ipYd~l~~ 85 (126)
T TIGR01689 65 TLPIIILWLNQHNVPYDEIYV 85 (126)
T ss_pred hHHHHHHHHHHcCCCCceEEe
Confidence 456678899999999999993
No 336
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=29.51 E-value=2.3e+02 Score=20.84 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=40.4
Q ss_pred CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 022560 212 APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291 (295)
Q Consensus 212 a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi 291 (295)
...|+.|++..=.+.+. +-.+.+..||..+....+. +..-...+|++. .+|. +- .+...|.++|
T Consensus 19 ~g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p~~~~-~~nP~g~vPvL~--~~~~---~i-----~eS~~I~eYL 82 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKPEDLK-DLAPGTQPPFLL--YNGE---VK-----TDNNKIEEFL 82 (91)
T ss_pred CCCChhHHHHHHHHHHC-----CCceEEEEeCCCCCCHHHH-HhCCCCCCCEEE--ECCE---Ee-----cCHHHHHHHH
Confidence 35799999877665443 3234556666655424555 555667899665 3332 22 3457788888
Q ss_pred HHh
Q 022560 292 DAL 294 (295)
Q Consensus 292 ~~l 294 (295)
++.
T Consensus 83 de~ 85 (91)
T cd03061 83 EET 85 (91)
T ss_pred HHH
Confidence 764
No 337
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=28.33 E-value=40 Score=23.47 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHH----HCCCCCCccccCCccccCCCCCCC
Q 022560 89 ANVKGNDIWNFLR----TMDVPINSLHSQGYISIGCEPCTR 125 (295)
Q Consensus 89 ~~W~~~dvw~y~~----~~~~p~~~ly~~g~~sigc~~ct~ 125 (295)
..||.+||++++. +++++..++--..|.=-|-.-|.+
T Consensus 3 ~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~m 43 (68)
T cd08757 3 QYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSM 43 (68)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcC
Confidence 3699999999886 478999877777786667666754
No 338
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.87 E-value=55 Score=26.96 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=18.4
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCC
Q 022560 249 KEYAKQKLQLGSFPTILFFPKHS 271 (295)
Q Consensus 249 ~~l~~~~~~V~~~Pti~~~~~g~ 271 (295)
...+ .+++|.++||+++.+.+.
T Consensus 159 ~~~a-~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLA-RELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHH-HHcCCCccCEEEEEeCCe
Confidence 4556 788999999999998765
No 339
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=27.69 E-value=2e+02 Score=22.57 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=32.0
Q ss_pred hcCCCeEEEEEEcCCCc---------HHHHHHhcCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 022560 232 LAGNGVKVGKFRADGDQ---------KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292 (295)
Q Consensus 232 ~~~~~v~~~~vd~~~~~---------~~l~~~~~~V~~~Pti~~~~~g~~~~~~~~gg~~~~e~l~~fi~ 292 (295)
++++++.+.+.|..++- .++. ++-+...+|-+++ +|+ ++. .|..-+.++|.+|+.
T Consensus 36 Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L-~~~G~e~LPitlV--dGe--iv~-~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 36 LKEQGVEVERYNLAQNPQAFVENPEVNQLL-QTEGAEALPITLV--DGE--IVK-TGRYPTNEELAEWLG 99 (123)
T ss_dssp HHHTT-EEEEEETTT-TTHHHHSHHHHHHH-HHH-GGG-SEEEE--TTE--EEE-ESS---HHHHHHHHT
T ss_pred HHhCCceEEEEccccCHHHHHhCHHHHHHH-HHcCcccCCEEEE--CCE--EEE-ecCCCCHHHHHHHhC
Confidence 33457999999998862 1333 4558889997765 565 443 444678899998874
No 340
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=27.43 E-value=38 Score=29.67 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHCCCCCCccccCCcc
Q 022560 88 VANVKGNDIWNFLRTMDVPINSLHSQGYI 116 (295)
Q Consensus 88 i~~W~~~dvw~y~~~~~~p~~~ly~~g~~ 116 (295)
+++|.+.++-.|.++.++||.+|=.+|--
T Consensus 187 ~~~~~~~~~~~~~~~~~~~yp~~~~~g~~ 215 (229)
T PRK11081 187 LFEGGYPVLAKVAKRKGLPYPHIDEQGQI 215 (229)
T ss_pred HHhhcCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 67999999999999999999999888754
No 341
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=27.36 E-value=35 Score=24.31 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHH----HCCCCCCccccCCccccCCCCCCCC
Q 022560 89 ANVKGNDIWNFLR----TMDVPINSLHSQGYISIGCEPCTRP 126 (295)
Q Consensus 89 ~~W~~~dvw~y~~----~~~~p~~~ly~~g~~sigc~~ct~~ 126 (295)
-.||..+||++|. .+.+..+..-.+.|.=-|..-|.+.
T Consensus 6 ~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms 47 (74)
T cd08539 6 QYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMS 47 (74)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccC
Confidence 4699999999987 5688888777777877788888663
No 342
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=26.87 E-value=60 Score=30.26 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=44.8
Q ss_pred hhcchhchHHHHHHHhcC--CEEEEeeeccCCCcccCCCCcee-cCCc-ccc-ccCCCC---CEEEEeeCCCCCHHHHHH
Q 022560 27 ECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQ-VDPV-FEG-LEGGVG---SLVKWNPVANVKGNDIWN 98 (295)
Q Consensus 27 ~c~~~~K~~pl~~~l~~~--~~~~~G~R~~es~~~R~~~~~~~-~~~~-~~~-~~~~~~---~~~~~~Pi~~W~~~dvw~ 98 (295)
.|....|-.-|.+...+. +.+++|-=+++...+......+. .|+. .+. .-.+-+ -.-.++||.+++..||.+
T Consensus 95 ~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~~~l~~ii~PL~~~~K~eVr~ 174 (349)
T cd01998 95 LCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQLSRLIFPLGDLTKPEVRE 174 (349)
T ss_pred hhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCcceEeccCCHHHHhheeecCCCCCHHHHHH
Confidence 466667777777665544 47888865544210100011111 1110 000 000000 023689999999999999
Q ss_pred HHHHCCCCC
Q 022560 99 FLRTMDVPI 107 (295)
Q Consensus 99 y~~~~~~p~ 107 (295)
|.+.++||.
T Consensus 175 ~A~~~gl~~ 183 (349)
T cd01998 175 IAKELGLPV 183 (349)
T ss_pred HHHHcCCCC
Confidence 999999984
No 343
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=26.77 E-value=1.6e+02 Score=19.79 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=31.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEE
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~ 266 (295)
..|+.+.|+.|.+..-.+.... .+-.+..+.+|......++. +......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~---~~i~~~~~~~~~~~~~~~~~-~~~p~~~vP~l~~ 56 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETG---LGDDVELVLVNPWSDDESLL-AVNPLGKIPALVL 56 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhC---CCCCcEEEEcCcccCChHHH-HhCCCCCCCEEEE
Confidence 3567888999987665443310 12134555555433324555 4555678897753
No 344
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=26.12 E-value=4e+02 Score=22.51 Aligned_cols=93 Identities=13% Similarity=0.202 Sum_probs=51.6
Q ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 022560 202 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 253 (295)
Q Consensus 202 ~~k~vvV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~ 253 (295)
.++.|++.|| -++--.|-...-.|...+.+|+..+-.++.+.+|.. +.+++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is- 110 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS- 110 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhH-
Confidence 5788888888 344344544455666666666664444444444321 25788
Q ss_pred HhcCCC----CCC--eEEEEeCCC-CCee--ecCCCCCCHHHHHHHHHHhC
Q 022560 254 QKLQLG----SFP--TILFFPKHS-SKPI--KYPSERRDVDSLMAFVDALR 295 (295)
Q Consensus 254 ~~~~V~----~~P--ti~~~~~g~-~~~~--~~~gg~~~~e~l~~fi~~l~ 295 (295)
+.|+|- +.+ -++++...+ .+.+ ....-.++.++....|+.+|
T Consensus 111 rdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 111 RDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQ 161 (196)
T ss_pred HhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHh
Confidence 888872 333 344444333 1111 11111488888888887654
No 345
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=24.44 E-value=48 Score=23.46 Aligned_cols=12 Identities=8% Similarity=0.847 Sum_probs=9.5
Q ss_pred HHHHHHHHHCCC
Q 022560 94 NDIWNFLRTMDV 105 (295)
Q Consensus 94 ~dvw~y~~~~~~ 105 (295)
.-||+||+.++|
T Consensus 27 ~~lw~YIk~~~L 38 (76)
T PF02201_consen 27 KRLWQYIKENNL 38 (76)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHhcC
Confidence 458999999873
No 346
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=24.39 E-value=3.4e+02 Score=22.74 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=36.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEE
Q 022560 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 203 ~k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~ 265 (295)
+...+..|+.+.|+.|+...-.+.+. +-.+.+..||..+..+++. +..-...+|++.
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~-----gl~~e~~~v~~~~~~~~~~-~~nP~g~VPvL~ 63 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEK-----GVSVEIEQVEKDNLPQDLI-DLNPYQSVPTLV 63 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHC-----CCCCEEEeCCcccCCHHHH-HhCCCCCCCEEE
Confidence 33456677778999999877555443 3235666677654424565 555567899996
No 347
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=24.21 E-value=1.1e+02 Score=23.76 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=18.0
Q ss_pred EEEEEECCCChhHHHHHHHHHH
Q 022560 206 WLVVLYAPWCQFCQAMEGSYVE 227 (295)
Q Consensus 206 vvV~Fya~wC~~C~~~~p~~~~ 227 (295)
.+..|+.|.|..|+.....|++
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHH
Confidence 3567889999999998877755
No 348
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]
Probab=23.54 E-value=42 Score=29.63 Aligned_cols=12 Identities=17% Similarity=0.899 Sum_probs=10.2
Q ss_pred HHHHHHHHHCCC
Q 022560 94 NDIWNFLRTMDV 105 (295)
Q Consensus 94 ~dvw~y~~~~~~ 105 (295)
.-||+||++|+|
T Consensus 126 k~iw~YIke~nL 137 (240)
T KOG1946|consen 126 KKIWAYIKEHNL 137 (240)
T ss_pred HHHHHHHHHhcc
Confidence 457999999987
No 349
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=23.48 E-value=87 Score=23.83 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=23.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 022560 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247 (295)
Q Consensus 207 vV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 247 (295)
+..|+.+.|..|++....+++- ++.|..+|+-+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA-------GIEPEIVEYLKT 34 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-------CCCeEEEecccC
Confidence 3578899999999987666542 355666665443
No 350
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=23.29 E-value=3.2e+02 Score=25.22 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=52.1
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHhcCCCCCCeEEEE-------------eC-
Q 022560 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF-------------PK- 269 (295)
Q Consensus 204 k~vvV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~V~~~Pti~~~-------------~~- 269 (295)
..+||.+. |+.|++....++.+...-+ .+.++.||+....-+-+..++.-..+|.+-+. .+
T Consensus 77 ~~~lIELG---sG~~~Kt~~LL~aL~~~~~--~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 77 GSMLVELG---SGNLRKVGILLEALERQKK--SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred CCEEEEEC---CCchHHHHHHHHHHHhcCC--CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccc
Confidence 44788876 5678888888888764322 48899999987521111133333466765551 11
Q ss_pred ---CCCCeeecCC---CCCCHHHHHHHHHHh
Q 022560 270 ---HSSKPIKYPS---ERRDVDSLMAFVDAL 294 (295)
Q Consensus 270 ---g~~~~~~~~g---g~~~~e~l~~fi~~l 294 (295)
+..+.+-+.| |..+.++...||.++
T Consensus 152 ~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~ 182 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGNFSRPEAAAFLAGF 182 (319)
T ss_pred cccCCccEEEEeCccccCCCHHHHHHHHHHH
Confidence 1122444444 468889999998765
No 351
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=22.96 E-value=2.6e+02 Score=19.13 Aligned_cols=52 Identities=12% Similarity=0.014 Sum_probs=32.1
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHhcCCCCCCeEE
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTIL 265 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~---~~~~l~~~~~~V~~~Pti~ 265 (295)
..|+.+.|+.|+...-.+.++ +-.+.+..+|... ...++. +--....+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~-----gl~~e~~~v~~~~~~~~~~~~~-~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK-----GLRCEEYDVSLPLSEHNEPWFM-RLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc-----CCCCEEEEecCCcCccCCHHHH-HhCcCCCCCEEE
Confidence 468888999998776444333 3235666666532 114455 445567899985
No 352
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=22.04 E-value=96 Score=23.70 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=23.5
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 022560 208 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247 (295)
Q Consensus 208 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 247 (295)
..|+.+.|..|++....+++- ++.|-.+|+-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-------CCCeEEEeccCC
Confidence 578899999999988776552 356566665443
No 353
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=21.20 E-value=71 Score=28.10 Aligned_cols=25 Identities=12% Similarity=0.472 Sum_probs=22.9
Q ss_pred EEEeeCCCCCHHHHHHHHHHCCCCC
Q 022560 83 VKWNPVANVKGNDIWNFLRTMDVPI 107 (295)
Q Consensus 83 ~~~~Pi~~W~~~dvw~y~~~~~~p~ 107 (295)
..++||.+-+..+|++|.+.+++|.
T Consensus 153 ~~i~PL~~l~K~eV~~lA~~~g~p~ 177 (250)
T TIGR00552 153 CDIAPIGDLFKTQVYELAKRLNVPE 177 (250)
T ss_pred cCccccCCCcHHHHHHHHHHHCccH
Confidence 4799999999999999999999864
No 354
>PLN02720 complex II
Probab=20.29 E-value=67 Score=25.46 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=17.3
Q ss_pred EEeeCCCCCHHHHHHHHHHC
Q 022560 84 KWNPVANVKGNDIWNFLRTM 103 (295)
Q Consensus 84 ~~~Pi~~W~~~dvw~y~~~~ 103 (295)
|=.||=.||..||-+||..-
T Consensus 33 rdkPLP~Ws~sDVeeFIaSD 52 (140)
T PLN02720 33 RDKPLPPWSDSDVDEFIASD 52 (140)
T ss_pred CCCCCCCCchhhHHHHHhcC
Confidence 55689999999999999864
No 355
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=20.06 E-value=1.5e+02 Score=29.63 Aligned_cols=77 Identities=16% Similarity=0.311 Sum_probs=50.5
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHHHHHH-H--HHHHHHhcCCCeEEEEEEcCCCcHHHHH-------HhcCC
Q 022560 189 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGDQKEYAK-------QKLQL 258 (295)
Q Consensus 189 t~~~f~~~i~~~~~~k~vvV~Fya~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~vd~~~~~~~l~~-------~~~~V 258 (295)
..+.|+++-. ++|++++-..-+.|..|..|..+ | ++.++.+.+ +++-++||-++- +++-+ ...+-
T Consensus 101 gqeaf~kar~---enkpifLsvgystchwchvmekesfeneet~~ilne-nfv~ikVDREER-PDVDK~YM~Fv~assg~ 175 (786)
T KOG2244|consen 101 GQEAFNKARA---ENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE-NFVKIKVDREER-PDVDKLYMAFVVASSGG 175 (786)
T ss_pred hHHHHHHHHh---cCCCEEEEcccccchheeeeecccccCHHHHHHHhh-hhhhhccChhhc-CchHHHHHHHHHhccCC
Confidence 3456666554 89999999999999999988653 3 336666655 455555555554 44331 23456
Q ss_pred CCCCeEEEEeCC
Q 022560 259 GSFPTILFFPKH 270 (295)
Q Consensus 259 ~~~Pti~~~~~g 270 (295)
-+.|.-++..+.
T Consensus 176 GGWPmsV~LTPd 187 (786)
T KOG2244|consen 176 GGWPMSVFLTPD 187 (786)
T ss_pred CCCceeEEeCCC
Confidence 678887777654
Done!