RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022560
(295 letters)
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide
binding, thiosulfonate intermediate, oxidoreductase;
HET: ADX; 2.70A {Pseudomonas aeruginosa}
Length = 275
Score = 192 bits (489), Expect = 2e-60
Identities = 89/167 (53%), Positives = 123/167 (73%), Gaps = 3/167 (1%)
Query: 1 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTR 60
+ PD ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+DQSPGTR
Sbjct: 112 LSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTR 171
Query: 61 SEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGC 120
S++ V+++D F E + K+NP++++ ++W ++R +++P NSLH +GYISIGC
Sbjct: 172 SQVAVLEIDGAFSTPEKPL---YKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGC 228
Query: 121 EPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGN 167
EPCTRPVLP QHEREGRWWWE+A KECGLH GN+ + + + +
Sbjct: 229 EPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNLISKALEHHHHHH 275
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 191 bits (487), Expect = 3e-60
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 1 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPG 58
R L+ +G ++ + KV P+ RALK L + W G R++QS
Sbjct: 104 YRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG- 162
Query: 59 TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI 118
+R+ +PV+ + + K P+ + I+ +L+ + + L +GY+S+
Sbjct: 163 SRANLPVLAIQR----------GVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSV 212
Query: 119 GCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKG 153
G TR PG E E R++ +ECGLH+G
Sbjct: 213 GDTHTTRKWEPGMAEEETRFFGL---KRECGLHEG 244
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS
reductase, oxidoreductase; HET: A3P; 2.10A
{Saccharomyces cerevisiae}
Length = 261
Score = 184 bits (469), Expect = 2e-57
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 13/156 (8%)
Query: 1 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPG 58
PD E +A SK +E + + KV P RA K + A TG+RK Q
Sbjct: 107 YKPDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGS- 165
Query: 59 TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI 118
RS++ ++++D + ++K NP+ N + ++ +VP N L GY SI
Sbjct: 166 ARSQLSIIEIDEL--------NGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSI 217
Query: 119 GCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN 154
G T+PV G+ ER GRW + ECG+H+ +
Sbjct: 218 GDYHSTQPVKEGEDERAGRWKGKA--KTECGIHEAS 251
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 143 bits (362), Expect = 5e-42
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 1 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPG 58
R L+ +G ++ + KV P+ RALK L + W G R++QS
Sbjct: 103 YRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG- 161
Query: 59 TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI 118
+R+ +PV+ + + K P+ + I+ +L+ + + L +GY+S+
Sbjct: 162 SRANLPVLAIQ----------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSV 211
Query: 119 GC 120
G
Sbjct: 212 GD 213
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase,
nucleotide-binding; HET: FAD; 1.90A {Saccharomyces
cerevisiae}
Length = 306
Score = 131 bits (329), Expect = 2e-36
Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 16/182 (8%)
Query: 1 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSP 57
FP + S YE Q V R +K A + G R P
Sbjct: 112 TFPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD-P 170
Query: 58 GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYIS 117
+ P+ + D ++ P+ + +IW+FL + PI L+ +G+ S
Sbjct: 171 FGEALKPIQRTDS-------NWPDFMRLQPLLHWDLTNIWSFLLYSNEPICGLYGKGFTS 223
Query: 118 IGCEPCTRP-----VLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNA 172
IG + P W A K+ + + +
Sbjct: 224 IGGINNSLPNPHLRKDSNNPALHFEWEIIHAFGKDAEGERSSAINTSPISVVDKERFSKY 283
Query: 173 SE 174
+
Sbjct: 284 HD 285
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein,
rossmann- like fold, APO-form, extended loop region;
HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A*
3g6k_A*
Length = 308
Score = 118 bits (295), Expect = 2e-31
Identities = 25/183 (13%), Positives = 48/183 (26%), Gaps = 14/183 (7%)
Query: 1 MFPDAVE-VQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGT 59
F ++ L + D + + +A + G R P
Sbjct: 117 TFKTLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTD-PFG 175
Query: 60 RSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIG 119
P+ + D + P+ + +IW+FL + PI L+ G+ S+G
Sbjct: 176 EHLKPIQKTDA-------NWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLG 228
Query: 120 CEPCTRP-----VLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 174
T P + + WE + A + +
Sbjct: 229 NVEETLPNPHLRKDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENLHEDY 288
Query: 175 AVA 177
Sbjct: 289 YPG 291
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 81.6 bits (202), Expect = 2e-19
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPT 263
L+ YAPWC C+ +E Y L K G + + K D + + ++ FPT
Sbjct: 27 DVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKM--DATANDITNDQYKVEGFPT 84
Query: 264 ILFFPK-HSSKPIKYPSERRDVDSLMAFVD 292
I F P PIK+ RD++ L F+D
Sbjct: 85 IYFAPSGDKKNPIKFEGGNRDLEHLSKFID 114
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 79.0 bits (195), Expect = 1e-18
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 168 GAGNASEAVADIFNSQ-NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYV 226
G+ +S AV+ +++S +++ L + WLV YAPWC CQ + +
Sbjct: 1 GSSGSSGAVSGLYSSSDDVIELTPSNFNREVIQSD--GLWLVEFYAPWCGHCQRLTPEWK 58
Query: 227 ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 286
+ A L VKVG AD Q + +Q FPTI F + +KP Y R ++
Sbjct: 59 KAATALKDV-VKVGAVNADKHQSLGGQYGVQ--GFPTIKIFGANKNKPEDYQGG-RTGEA 114
Query: 287 LMAFV 291
++
Sbjct: 115 IVDAA 119
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 78.5 bits (194), Expect = 2e-18
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGN----GVKVGKFRADGDQKEYAKQKLQLGS 260
V+ Y PW + A + +L+ + + + + ++
Sbjct: 35 DVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVS--G 92
Query: 261 FPTILFFPK-HSSKPIKYPSERRDVDSLMAFV 291
FPT+ ++ + +P +Y + R + + +FV
Sbjct: 93 FPTMRYYTRIDKQEPFEYSGQ-RYLSLVDSFV 123
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 77.0 bits (190), Expect = 5e-18
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQKEYAKQKLQLGS 260
L+ YAPWC C+A+ Y EL A + V + K A + ++
Sbjct: 27 DVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD-----EIQG 81
Query: 261 FPTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 292
FPTI +P +P+ Y R V+ L+ F+
Sbjct: 82 FPTIKLYPAGAKGQPVTYSGS-RTVEDLIKFIA 113
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 74.7 bits (184), Expect = 6e-17
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 169 AGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVEL 228
+G++ + ++ + LN N ++ L+ YAPWC C+ Y ++
Sbjct: 3 SGSSGDDDLEVKEENGVWVLND---GNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKI 59
Query: 229 ADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 286
A L N + V K D K + +PTI K + + Y R +
Sbjct: 60 ASTLKDNDPPIAVAKI--DATSASMLASKFDVSGYPTIKILKK--GQAVDYDGS-RTQEE 114
Query: 287 LMAFV 291
++A V
Sbjct: 115 IVAKV 119
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 79.4 bits (195), Expect = 1e-16
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 200 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 259
+EPWLV +APW +A+ + + L G +KVG D E +
Sbjct: 452 ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ-LKVGT--LDCTIHEGLCNMYNIQ 508
Query: 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
++PT + F + S +Y + ++ F++
Sbjct: 509 AYPTTVVFNQ--SSIHEYEGH-HSAEQILEFIE 538
Score = 71.7 bits (175), Expect = 4e-14
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+ W+V YAPW Q + LA + G V+ GK D QK + ++P
Sbjct: 675 KTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK-VRAGK--VDCQAYPQTCQKAGIKAYP 731
Query: 263 TILFFPKHSSKPIKYPSER--RDVDSLMAFVD 292
++ + +K + + RD ++ A +
Sbjct: 732 SVKLYQYERAKKSIWEEQINSRDAKTIAALIY 763
Score = 67.9 bits (165), Expect = 7e-13
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 243
++V+L + L + E W+V Y+PW Q + + +A L G + VG
Sbjct: 544 SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL-INVGS-- 600
Query: 244 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER---RDVDSLMAFVD 292
D Q + + +P I F+P+ SSK +Y S RD SL ++
Sbjct: 601 VDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGL 652
Score = 62.5 bits (151), Expect = 4e-11
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
E W V Y+P + ++ E A ++ G +++G D+ + + S+P+
Sbjct: 134 ELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRMKGVN--SYPS 190
Query: 264 ILFFPKHSSKPIKYPSERRDVDSLMAFV 291
+ F +KY + R +SL+AF
Sbjct: 191 LFIFRS-GMAAVKYNGD-RSKESLVAFA 216
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 78.7 bits (193), Expect = 1e-16
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 173 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 232
EAVA +V L ++ + L +APWC C+ M YV+ A+ L
Sbjct: 6 QEAVAP--EDSAVVKLAT---DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL 60
Query: 233 AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK-HSSKPIKYPSERRDVDSLMAFV 291
+ + + D + + + + FP++ F + I Y R ++++ F+
Sbjct: 61 VEKNITLAQI--DCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGP-RTAEAIVQFM 117
Score = 74.1 bits (181), Expect = 5e-15
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
+ LV+ YAPWC C+ + +Y ELAD A V + D + + ++ +PT
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE--GYPT 434
Query: 264 ILFFPK-HSSKPIKYPSERRDVDSLMAFVD 292
I+ +P S+ + Y R +DSL F+
Sbjct: 435 IVLYPGGKKSESVVYQGS-RSLDSLFDFIK 463
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 73.1 bits (180), Expect = 2e-16
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+ W++ YAPWC CQ ++ + A+ V + K D ++ + + + P
Sbjct: 22 EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKV--DVTEQPGLSGRFIINALP 79
Query: 263 TILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
TI + +Y R + F+
Sbjct: 80 TIYHCKD--GEFRRYQGP-RTKKDFINFIS 106
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 76.8 bits (188), Expect = 6e-16
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGSF 261
+ L+ YAPWC C+ +E Y EL +KL+ + + + K D + ++ F
Sbjct: 370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKM--DATANDVP-SPYEVRGF 426
Query: 262 PTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 292
PTI F P P KY R++ ++++
Sbjct: 427 PTIYFSPANKKLNPKKYEGG-RELSDFISYLQ 457
Score = 74.5 bits (182), Expect = 3e-15
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 243
+++ L E+ LV +APWC + + Y A +L G V + K
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKV- 59
Query: 244 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
D K + +PT+ F + + Y R D +++ +
Sbjct: 60 -DCTANTNTCNKYGVSGYPTLKIF-RDGEEAGAYDGP-RTADGIVSHLK 105
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 71.2 bits (175), Expect = 7e-16
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGS 260
+ + YAPWC C+ + ++ EL+ K VK+ + ++ +K ++
Sbjct: 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVR--G 78
Query: 261 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
+PT+L F + K ++ RD+DSL FV
Sbjct: 79 YPTLLLF-RGGKKVSEHSGG-RDLDSLHRFV 107
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 75.1 bits (184), Expect = 1e-15
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSF 261
++ V YAPWC C+ + + +L + + + + K D E K+ SF
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKM--DSTANEVEAVKVH--SF 322
Query: 262 PTILFFPKHS-SKPIKYPSERRDVDSLMAFVD 292
PT+ FFP + I Y E R +D F++
Sbjct: 323 PTLKFFPASADRTVIDYNGE-RTLDGFKKFLE 353
Score = 45.1 bits (106), Expect = 1e-05
Identities = 8/92 (8%), Positives = 22/92 (23%), Gaps = 4/92 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGSFPT 263
+++ ++ A+ G +Q+ L+ P
Sbjct: 137 THILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPA 196
Query: 264 ILFFP--KHSSKPIKYPSERRDVDSLMAFVDA 293
+ + +K E + + F
Sbjct: 197 VRLITLEEEMTKYKPESEE-LTAERITEFCHR 227
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 70.4 bits (173), Expect = 2e-15
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGSF 261
+ LV YAPWC C+A+ Y + A KL G +++ K D ++ Q+ + +
Sbjct: 25 KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV--DATEESDLAQQYGVRGY 82
Query: 262 PTILFFPK-HSSKPIKYPSERRDVDSLMAFV 291
PTI FF ++ P +Y + R+ D ++ ++
Sbjct: 83 PTIKFFRNGDTASPKEYTAG-READDIVNWL 112
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 74.2 bits (182), Expect = 3e-15
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA-----GNGVKVGKFRADGDQ 248
EN+ + + + LV YA WC+F Q + + E +D + N V + D
Sbjct: 13 ENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD-QH 71
Query: 249 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
+ A Q+ ++ +PT+ F +Y + R V +L ++
Sbjct: 72 SDIA-QRYRISKYPTLKLFRNGMMMKREYRGQ-RSVKALADYI 112
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 72.6 bits (178), Expect = 3e-15
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 173 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 232
SE ++ ++ LN N ++ L+ YAPWC C+ Y ++A+ L
Sbjct: 5 SEDDLEVKEENGVLVLND---ANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANIL 61
Query: 233 AGNG--VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAF 290
+ V K D + + +PTI K + + Y R + ++A
Sbjct: 62 KDKDPPIPVAKI--DATSASVLASRFDVSGYPTIKILKK--GQAVDYEGS-RTQEEIVAK 116
Query: 291 V 291
V
Sbjct: 117 V 117
Score = 66.8 bits (163), Expect = 3e-13
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQKEY 251
EN + + + LV YAPWC C+ + Y + A +L+ + + K A +
Sbjct: 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLA 197
Query: 252 AKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
+ + +PT+ F K +P Y R+ ++ ++
Sbjct: 198 KRFDVS--GYPTLKIFRK--GRPYDYNGP-REKYGIVDYM 232
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 69.7 bits (171), Expect = 4e-15
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG---VKVGKFRADGDQKEYAKQKLQLG 259
++ W+V YAPWC C+ +E + A ++ VK+ A + A + +
Sbjct: 25 EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT-VNQVLA-SRYGIR 82
Query: 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
FPTI F K P+ Y R +++
Sbjct: 83 GFPTIKIFQK-GESPVDYDGG-RTRSDIVSRA 112
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 68.9 bits (168), Expect = 6e-14
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGS 260
+ W V +A WC C A ++ LA+ + + + + + +
Sbjct: 30 RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG 89
Query: 261 FPTILFF--PKHSSKPIKYPSERRDVDSLMAFV 291
FPT+ FF + +P DV +L +
Sbjct: 90 FPTVRFFXAFTXNGSGAVFPVAGADVQTLRERL 122
Score = 43.1 bits (101), Expect = 4e-05
Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 200 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 259
+ +E ++ + E+A L+ + V R + + K +
Sbjct: 154 RNNEEYLALIFEXGGSYLAR-------EVALDLSQHK-GVAVRRVLNTEANVVR-KFGVT 204
Query: 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294
FP+ + + + P A++ L
Sbjct: 205 DFPSCYLLFR-NGSVSRVPVLMESRSFYTAYLQRL 238
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 65.1 bits (159), Expect = 2e-13
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+ W+V YAPWC CQ + LA + G V+ GK + QK + ++P
Sbjct: 21 KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK-VRAGKVDCQ-AYPQTC-QKAGIKAYP 77
Query: 263 TILFFP---KHSSKPIKYPSERRDVDSLMAFVDA 293
++ + S + + RD ++ A +
Sbjct: 78 SVKLYQYERAKKSIWEEQINS-RDAKTIAALIYG 110
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 66.9 bits (163), Expect = 3e-13
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGNG------VKVGKFRADGDQKEYAKQKLQLG 259
LV + + E + LA+ A + V + + + + K KL
Sbjct: 25 VLVKFDTQYPYGEKQDE--FKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE 82
Query: 260 SFPTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 292
S+P F P+ Y V ++ ++
Sbjct: 83 SYPVFYLFRDGDFENPVPYTGA-VKVGAIQRWLK 115
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 67.7 bits (164), Expect = 6e-13
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGS 260
W V +A WC A ++ ELA+ + + + + ++ +
Sbjct: 30 SSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG 89
Query: 261 FPTILFFPK--HSSKPIKYPSERRDVDSLMAFV 291
FPT+ FF + P +V +L +
Sbjct: 90 FPTVRFFQAFTKNGSGATLPGAGANVQTLRMRL 122
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 66.3 bits (161), Expect = 1e-12
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
LV YAPWC C+ + ++ + A +L G V+V D ++ + K + FP
Sbjct: 35 NYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLNKNKALCAKYDVNGFP 93
Query: 263 TILFFPKHSSKPIKYPSER---------------RDVDSLMAFV 291
T++ F K R + ++ F
Sbjct: 94 TLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFS 137
Score = 43.2 bits (101), Expect = 5e-05
Identities = 5/87 (5%), Positives = 17/87 (19%), Gaps = 11/87 (12%)
Query: 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265
Y+ + + + + ++
Sbjct: 188 GKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDK-----------SKLV 236
Query: 266 FFPKHSSKPIKYPSERRDVDSLMAFVD 292
F K +Y + + + F+
Sbjct: 237 VFDADKDKFWEYEGNSINKNDISKFLR 263
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 62.3 bits (150), Expect = 4e-11
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 10/116 (8%)
Query: 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG------- 236
++V L+ + R PW+V+ Y C C+ ++ + A L
Sbjct: 24 SVVDLSGDDFSRVHR-VAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQI 82
Query: 237 VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
+ K + P + FF S ++ +
Sbjct: 83 ATAAAVNCASEVDLCRKYDIN--FVPRLFFFYPRDSCRSNEECGTSSLEHVAFENS 136
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 61.6 bits (149), Expect = 5e-11
Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLA-------GNGVKVGKFRADGDQKEYAKQK 255
+ L + Y + + + L + D ++ +K
Sbjct: 27 KYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVM--VDAKKEAKLAKK 84
Query: 256 LQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
L ++ + I++ E D L+ F+
Sbjct: 85 LGFDEEGSLYVL--KGDRTIEFDGE-FAADVLVEFL 117
Score = 33.9 bits (77), Expect = 0.053
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE 250
+ + ++ ++ + ++ E A+ KF A D+
Sbjct: 129 NSKLEVQAFERIEDQIKLIGFFK--SEESEYYKAFEEAAEHFQPYI----KFFATFDKGV 182
Query: 251 YAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
K L + F+ +PI P + + L+ FV
Sbjct: 183 AKKLSL---KMNEVDFYEPFMDEPIAIPDKPYTEEELVEFV 220
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 60.8 bits (147), Expect = 8e-11
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFC------QAMEGSYVELADKLAGNGVKVGKFRADGD 247
+N + + E ++ + P + E A L GV G D +
Sbjct: 21 KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLV--DSE 78
Query: 248 QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
+ +KL L +I F + + I+Y E D+L+ F+
Sbjct: 79 KDAAVAKKLGLTEEDSIYVFKED--EVIEYDGE-FSADTLVEFL 119
Score = 33.8 bits (77), Expect = 0.052
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 191 TGMENLARLDHRQEPWLVVLY--APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ 248
G L ++ ++ ++ Y + +A + E A++ F A D
Sbjct: 131 EGERELQAFENIEDEIKLIGYFKNKDSEHYKA----FKEAAEEFHPYI----PFFATFDS 182
Query: 249 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
K K L I F+ +P+ P + + ++ FV
Sbjct: 183 KVAKKLTL---KLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFV 222
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 52.9 bits (127), Expect = 1e-08
Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Query: 159 DAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTG-MENLARLDHRQEPWLVVLYAPWCQF 217
+ + N G + F + T + E W V Y+P C
Sbjct: 69 EKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSH 128
Query: 218 CQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKY 277
C + ++ E A ++ G +++G D+ + + S+P++ F +KY
Sbjct: 129 CHDLAPTWREFAKEVDGL-LRIGAVNCGDDRM--LCRMKGVNSYPSLFIFRS-GMAAVKY 184
Query: 278 PSERRDVDSLMAFV 291
+ R +SL+AF
Sbjct: 185 NGD-RSKESLVAFA 197
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 50.2 bits (120), Expect = 4e-08
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK----QKLQLGS 260
W+V +A W CQ+ Y +L+ K G+ GK +
Sbjct: 28 TWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQ 87
Query: 261 FPTILFF 267
PT++ F
Sbjct: 88 LPTLILF 94
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 49.4 bits (118), Expect = 7e-08
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P +++ C +C M+ ++ + G + R + ++ K PT
Sbjct: 28 PTIIMFKTDTCPYCVEMQKELSYVSKEREGK-FNIYYARLEEEKNIDLAYKYDANIVPTT 86
Query: 265 LFFPK 269
+F K
Sbjct: 87 VFLDK 91
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 51.2 bits (122), Expect = 7e-08
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 8/106 (7%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQK 249
E + + A C+ CQ E E + + +K+ + ++
Sbjct: 13 ELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE 72
Query: 250 EYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 295
E K + PTI+ I+Y ++ +
Sbjct: 73 ETEKYGVD--RVPTIVIEGD-KDYGIRY-IGLPAGLEFTTLINGIF 114
Score = 36.6 bits (84), Expect = 0.005
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 181 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 240
SQ L+ +E L +D + V C +C + + A LA + +
Sbjct: 116 VSQRKPQLSEKTLELLQVVD--IPIEIWVFVTTSCGYCPSAAVMAWDFA--LANDYITSK 171
Query: 241 KFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294
D + + ++ Q+ P I K ++ + ++ + ++ A+
Sbjct: 172 VI--DASENQDLAEQFQVVGVPKI-VINK---GVAEFVG-AQPENAFLGYIMAV 218
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 48.9 bits (116), Expect = 2e-07
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS-FPT 263
P +V+++ WC C+A++ + E + + V + +++ + G P
Sbjct: 48 PLMVIIHKSWCGACKALKPKFAESTEISELSHNFV-MVNLEDEEEPKDEDFSPDGGYIPR 106
Query: 264 ILFF 267
ILF
Sbjct: 107 ILFL 110
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 49.3 bits (117), Expect = 3e-07
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRAD----GDQKEYA-KQKLQLG 259
+V ++ + + + + K + K+
Sbjct: 37 VVKFDIASP--YGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK 94
Query: 260 SFPTILFFPKHSSKPIKYPSER-RDVDSLMAFV 291
+FP+I F ++ + ++ PS +D+L AFV
Sbjct: 95 NFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFV 127
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 45.8 bits (109), Expect = 1e-06
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYV----ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 260
+V ++ C +CQ M ++V ++ L V D + + ++ ++
Sbjct: 21 MVMVYFHSEHCPYCQQMN-TFVLSDPGVSRLLEARFVVA-SVSVDTPEGQELARRYRVPG 78
Query: 261 FPTILFFPK 269
PT +F
Sbjct: 79 TPTFVFLVP 87
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 43.4 bits (103), Expect = 5e-06
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 192 GMENLARLDHRQE------PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 245
GM ++ L+ + C C M + + N V+ +
Sbjct: 1 GMNTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY--NYVEKIEILLQ 58
Query: 246 GDQKEYAKQKLQLGSFPTILFF 267
D +E A + + + PT+L F
Sbjct: 59 -DMQEIA-GRYAVFTGPTVLLF 78
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 44.0 bits (104), Expect = 5e-06
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 195 NLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG----NGVKVGKFRADGDQKE 250
N A ++ + +P ++ LYA WC C+ E ++ D
Sbjct: 23 NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVA 82
Query: 251 YAKQKLQLGSFPTILFFPK 269
K L + PTILFF
Sbjct: 83 LLK-HLNVLGLPTILFFDG 100
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 43.1 bits (102), Expect = 8e-06
Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
L+VL + W + C+A++ + ++++ + + V AD + E + + ++ + P
Sbjct: 23 LIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD-ENSEIS-ELFEISAVPYF 80
Query: 265 LFF 267
+
Sbjct: 81 III 83
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 43.1 bits (102), Expect = 9e-06
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
+ ++ +A WC C+ + + +++D AG+ V K D +Q + A Q++ + + PT
Sbjct: 34 KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD-EQSQIA-QEVGIRAMPT 91
Query: 264 ILFF 267
+FF
Sbjct: 92 FVFF 95
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 42.8 bits (101), Expect = 1e-05
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
VVL + WC C+AM Y +LA++ V K + + K A ++L + PT
Sbjct: 39 PVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLA-KELGIRVVPTF 95
Query: 265 LFF 267
Sbjct: 96 KIL 98
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 41.9 bits (99), Expect = 2e-05
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
VVL + WC +AM Y +LA++ V K + + K A ++L + PT
Sbjct: 26 PVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLA-KELGIRVVPTF 82
Query: 265 LFF 267
Sbjct: 83 KIL 85
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 41.9 bits (99), Expect = 2e-05
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LVVL +A WC C+ + VEL+ + A N V V K D + ++ A + + S PT
Sbjct: 22 LVVLDFFATWCGPCKMISPKLVELSTQFADN-VVVLKVDVD-ECEDIA-MEYNISSMPTF 78
Query: 265 LFF 267
+F
Sbjct: 79 VFL 81
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 41.5 bits (98), Expect = 2e-05
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
+ V +P C +C E + + V K D+ E A + L + P I
Sbjct: 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDIMVDR-EKA-IEYGLMAVPAIAI 61
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 41.6 bits (98), Expect = 3e-05
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
++ LY C + LA K K K + Q PTI
Sbjct: 27 IIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNS-----CIQHYHDNCLPTIFV 79
Query: 267 F 267
+
Sbjct: 80 Y 80
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 41.7 bits (98), Expect = 3e-05
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 205 PWLVVLYAPWCQFCQAMEGS--YVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
V + WC C+ + L K + + ++K + ++P
Sbjct: 29 LLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP 88
Query: 263 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294
T+LF S + + D L+ V
Sbjct: 89 TLLFI-NSSGEVVYRLVGAEDAPELLKKVKLG 119
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 40.4 bits (95), Expect = 6e-05
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
+V+ A WC C+ + + L++ AG V K D D + + + PT
Sbjct: 26 PIVVDFTATWCGPCKMIAPLFETLSNDYAGK-VIFLKV--DVDAVAAVAEAAGITAMPTF 82
Query: 265 LFF 267
+
Sbjct: 83 HVY 85
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 40.9 bits (96), Expect = 8e-05
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
L+ EL + +V AD +Q E + + FP L
Sbjct: 40 LLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAV--ADLEQSEAIGDRFNVRRFPATLV 97
Query: 267 F 267
F
Sbjct: 98 F 98
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 40.4 bits (95), Expect = 9e-05
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LVV+ A WC C+ M + +LA K K D + K A ++ + + PT
Sbjct: 36 LVVIDFTASWCGPCRIMAPVFADLAKKFP--NAVFLKVDVD-ELKPIA-EQFSVEAMPTF 91
Query: 265 LFF 267
LF
Sbjct: 92 LFM 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 42.1 bits (99), Expect = 1e-04
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 202 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 261
P L ++ Q C + LA + G + K D ++ A + L +
Sbjct: 25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ-FILAKLDCD-AEQMIA-AQFGLRAI 81
Query: 262 PTILFF 267
PT+ F
Sbjct: 82 PTVYLF 87
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 40.7 bits (95), Expect = 1e-04
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 204 EPWLVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 261
++VL C ++ + + L+ + D Y Q +
Sbjct: 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVD-QTAVYT-QYFDISYI 78
Query: 262 PTILFFPK 269
P+ +FF
Sbjct: 79 PSTVFFFN 86
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 39.6 bits (93), Expect = 1e-04
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LV++ A WC C+ + + E A K G K D + K+ A + + + PT
Sbjct: 30 LVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVD-ELKDVA-EAYNVEAMPTF 85
Query: 265 LFF 267
LF
Sbjct: 86 LFI 88
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 39.2 bits (92), Expect = 2e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LVV+ +A WC C+ + + EL++K K D +E A +K + + PT
Sbjct: 35 LVVVDFFATWCGPCKTIAPLFKELSEK---YDAIFVKVDVD-KLEETA-RKYNISAMPTF 89
Query: 265 LFF 267
+
Sbjct: 90 IAI 92
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 40.2 bits (94), Expect = 2e-04
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
L+V+ +APW C M ELA +L V K A+ E + +K ++ S PT
Sbjct: 34 LLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAE-GVPEVS-EKYEISSVPTF 89
Query: 265 LFF 267
LFF
Sbjct: 90 LFF 92
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 38.9 bits (91), Expect = 2e-04
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+V + C C+ ME + + V + ++ + E ++L P
Sbjct: 19 LSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSE-ARPELM-KELGFERVP 74
Query: 263 TILFF 267
T++F
Sbjct: 75 TLVFI 79
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 39.2 bits (92), Expect = 2e-04
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
L+V+ A WC C+ + + ELA K V K D + K A ++ + + PT
Sbjct: 28 LIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVD-ELKAVA-EEWNVEAMPTF 83
Query: 265 LFF 267
+F
Sbjct: 84 IFL 86
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 39.7 bits (93), Expect = 2e-04
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P +V YA WC C+ + ELA + G + + K + ++E A + S P+I
Sbjct: 40 PAIVDFYADWCGPCKMVAPILDELAKEYDGQ-IVIYKVDTE-KEQELA-GAFGIRSIPSI 96
Query: 265 LFFPK 269
LF P
Sbjct: 97 LFIPM 101
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 38.4 bits (90), Expect = 2e-04
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
+ + +P C C A + E+A+++ V+V + + A + + + PTI
Sbjct: 4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDA-VEVEYINVMENP-QKA-MEYGIMAVPTI 60
Query: 265 LFF 267
+
Sbjct: 61 VIN 63
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 39.4 bits (92), Expect = 2e-04
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P +V YA WC C+ + EL+ + AG + + K D + + +Q S PTI
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAGK-IYIYKVNVDKEPELARDFGIQ--SIPTI 109
Query: 265 LFFPK 269
F P
Sbjct: 110 WFVPM 114
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 39.3 bits (92), Expect = 3e-04
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
+V++ A WC C+ + + E A K G K D D+ + +K + + PT
Sbjct: 38 VVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKV--DVDELKEVAEKYNVEAMPTF 93
Query: 265 LFF 267
LF
Sbjct: 94 LFI 96
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 38.4 bits (90), Expect = 3e-04
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
L V+ C C + ++ +++K + + A + + PT
Sbjct: 23 LAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVH-QCQGTA-ATNNISATPTF 78
Query: 265 LFF 267
FF
Sbjct: 79 QFF 81
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 39.0 bits (91), Expect = 3e-04
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAG------NGVKVGKFRADGDQKEYAKQKL 256
Q ++ +Y+ C C ++ + ++ G +G+ + K
Sbjct: 31 QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGE--RELSAARLEMNKA 88
Query: 257 QLGSFPTILFF 267
+ PT++F+
Sbjct: 89 GVEGTPTLVFY 99
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 38.9 bits (91), Expect = 3e-04
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LVV+ A WC C+ + + +LA KL V K D D+ + + + PT
Sbjct: 40 LVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKV--DTDELKSVASDWAIQAMPTF 95
Query: 265 LFF 267
+F
Sbjct: 96 MFL 98
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 38.9 bits (91), Expect = 3e-04
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
++ +A WCQ C +L + + K D D+ E +K + S PTI
Sbjct: 44 VIVLYFFAKWCQACTMQSTEMDKLQKYYGKR-IYLLKV--DLDKNESLARKFSVKSLPTI 100
Query: 265 LFF 267
+
Sbjct: 101 ILL 103
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 38.8 bits (90), Expect = 4e-04
Identities = 8/86 (9%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Query: 183 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 242
N+ L T + ++E + C +C+ G+ + + + +
Sbjct: 9 DNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSE 68
Query: 243 RADGDQK-EYAKQKLQLGSFPTILFF 267
+ + + + + P +
Sbjct: 69 EPSQLNDLQAFRSRYGIPTVPGFVHI 94
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 39.1 bits (91), Expect = 4e-04
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
++ LY C + LA K K K + + Y L PTI
Sbjct: 34 VIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSCIEHYHDNCL-----PTIFV 86
Query: 267 F 267
+
Sbjct: 87 Y 87
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 38.4 bits (90), Expect = 4e-04
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LV+ C CQ + EL + + ++K Q+ L P I
Sbjct: 24 ACLVMFSRKNCHVCQKVTPVLEELRLNYEES-FGFYYVDVE-EEKTLF-QRFSLKGVPQI 80
Query: 265 LFF 267
L+F
Sbjct: 81 LYF 83
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 38.0 bits (89), Expect = 4e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
L+V+ +A WC C+ + LA ++ V+ K D +E A K + + PT
Sbjct: 21 LIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVD-QNEEAA-AKYSVTAMPTF 76
Query: 265 LFF 267
+F
Sbjct: 77 VFI 79
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 38.9 bits (91), Expect = 4e-04
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
+P +V+ Y+P C +C+AME + E A + + G+ + K +Q PT
Sbjct: 25 KPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS-AVFGRINIATNPWTAEKYGVQ--GTPT 81
Query: 264 ILFF 267
FF
Sbjct: 82 FKFF 85
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 38.0 bits (89), Expect = 5e-04
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LVV+ A WC C+ ++ + L++K + V + D D ++ A + ++ S PT
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVD-DCQDVA-SESEVKSMPTF 77
Query: 265 LFF 267
FF
Sbjct: 78 QFF 80
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 37.7 bits (88), Expect = 5e-04
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LV +A WC C E Y ++A+K G G+ D +QK K + + PT
Sbjct: 23 LVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK-AVFGRLNVDENQK--IADKYSVLNIPTT 79
Query: 265 LFF 267
L F
Sbjct: 80 LIF 82
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 38.4 bits (89), Expect = 6e-04
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQKEYAK-QKLQLG 259
P L+V A WC C+A++ S + VK+ D + +
Sbjct: 31 PTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQD 90
Query: 260 SFPTILFF 267
P ++
Sbjct: 91 GIPAVVVV 98
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 38.2 bits (89), Expect = 6e-04
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 241
S +V N T L R+ LV +A WC CQ + +A+ V K
Sbjct: 2 SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANK--DVTFIK 59
Query: 242 FRADGDQKEYAKQKLQLGSFPTILFF 267
D D+ A + S P + F
Sbjct: 60 V--DVDKNGNAADAYGVSSIPALFFV 83
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 37.7 bits (88), Expect = 7e-04
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LVV+ A WC + ++ + L++K + V + D D ++ A + ++ S PT
Sbjct: 33 LVVVDFSATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVD-DCQDVA-SECEVKSMPTF 88
Query: 265 LFF 267
FF
Sbjct: 89 QFF 91
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 38.1 bits (89), Expect = 7e-04
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
LV +APWC C+ + ELA AG +KV K + D+ + + S PT
Sbjct: 51 PLTLVDFFAPWCGPCRLVSPILEELARDHAGR-LKVVKV--NVDEHPGLAARYGVRSVPT 107
Query: 264 ILFF 267
++ F
Sbjct: 108 LVLF 111
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 37.8 bits (88), Expect = 8e-04
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
+V+ A WC+ C ++ + + V + D D + + + PT
Sbjct: 42 SIVIKFGAVWCKPCNKIKEYFKNQLNYYYVTLVDI-----DVDIHPKLNDQHNIKALPTF 96
Query: 265 LFF 267
F+
Sbjct: 97 EFY 99
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 37.3 bits (87), Expect = 0.001
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LVV+ YA WC C+ + + +++ K D + + A QK ++ + PT+
Sbjct: 26 LVVVDFYATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVD-ELGDVA-QKNEVSAMPTL 81
Query: 265 LFF 267
L F
Sbjct: 82 LLF 84
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 37.9 bits (88), Expect = 0.001
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
+V+ A WC + + Y+EL++ + D + +++ ++ + PT
Sbjct: 48 IVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVD-ELSDFS-ASWEIKATPTF 103
Query: 265 LFF 267
F
Sbjct: 104 FFL 106
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 37.8 bits (88), Expect = 0.001
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P ++ +APWC C++ + E A + AG V+ K + + + + ++ S PTI
Sbjct: 57 PMVIDFWAPWCGPCRSFAPIFAETAAERAGK-VRFVKV--NTEAEPALSTRFRIRSIPTI 113
Query: 265 LFF 267
+ +
Sbjct: 114 MLY 116
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 37.4 bits (87), Expect = 0.001
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
L V A WC C+ +E ++A + VK K AD + E K ++ PT
Sbjct: 39 LTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDAD-NNSEIV-SKCRVLQLPTF 94
Query: 265 LFF 267
+
Sbjct: 95 IIA 97
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
+V+ YA WC C+ M+ +L V+ K D + + A ++ ++ + PT
Sbjct: 32 KLVIDFYATWCGPCKMMQPHLTKLIQAYP--DVRFVKCDVD-ESPDIA-KECEVTAMPTF 87
Query: 265 LFF 267
+
Sbjct: 88 VLG 90
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 38.1 bits (88), Expect = 0.001
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 7/89 (7%)
Query: 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELA---DKLAGNGVK 238
S+ L + + +D ++V P C +C + A K +
Sbjct: 115 SREETNLMDETKQAIRNIDQDVR--ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKIL 172
Query: 239 VGKFRADGDQKEYAKQKLQLGSFPTILFF 267
+ + + + + P I+
Sbjct: 173 GDMV--EAIEYPEWADQYNVMAVPKIVIQ 199
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 37.5 bits (87), Expect = 0.001
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P LV +APWC C+ M + A LAG V++ K D + ++ P
Sbjct: 66 PLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAKI--DTQAHPAVAGRHRIQGIPAF 122
Query: 265 LFF 267
+ F
Sbjct: 123 ILF 125
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 36.5 bits (85), Expect = 0.002
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 207 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LV++ +A WC C+ + Y E + + K D D+ +K + S PT
Sbjct: 28 LVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKV--DVDEVSEVTEKENITSMPTF 83
Query: 265 LFF 267
+
Sbjct: 84 KVY 86
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 35.8 bits (83), Expect = 0.003
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
LV +A C C+ + ELA G + K D + K ++ S P
Sbjct: 19 SGVQLVDFWATACGPCKMIAPVLEELAADYEGK-ADILKLDVDENPS--TAAKYEVMSIP 75
Query: 263 TILFF 267
T++ F
Sbjct: 76 TLIVF 80
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 35.7 bits (83), Expect = 0.003
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
LV +A WC C+ + + E+ + AG V V K D + + Q+ S PT
Sbjct: 21 GLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK-VTVAKVNIDDNPE--TPNAYQVRSIPT 77
Query: 264 ILFF 267
++
Sbjct: 78 LMLV 81
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 35.8 bits (83), Expect = 0.003
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
E +V +A WC C + ELA+ V GK +D + + A + + S PT
Sbjct: 17 EIAVVDFWAEWCAPCLILAPIIEELAEDYP--QVGFGKLNSD-ENPDIA-ARYGVMSLPT 72
Query: 264 ILFF 267
++FF
Sbjct: 73 VIFF 76
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 35.4 bits (82), Expect = 0.004
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LV +A WC C+ + E+A + G + V K D D+ + ++ S PT+
Sbjct: 20 LVLVDFWAEWCAPCRMIAPILEEIAKEYEGK-LLVAKL--DVDENPKTAMRYRVMSIPTV 76
Query: 265 LFF 267
+ F
Sbjct: 77 ILF 79
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 35.4 bits (81), Expect = 0.005
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 265
L++ P C +C + G V + + + + PT +
Sbjct: 22 LLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFV 81
Query: 266 FF 267
Sbjct: 82 LM 83
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 34.6 bits (80), Expect = 0.007
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P LV +A WC C+ M E A+ A V V K D + + + + S PT+
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDENPE--TTSQFGIMSIPTL 75
Query: 265 LFF 267
+ F
Sbjct: 76 ILF 78
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 34.6 bits (80), Expect = 0.007
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P LV +A WC C+ + S +A + +++ K + D+ K + S PT+
Sbjct: 25 PVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK-IEIVKL--NIDENPGTAAKYGVMSIPTL 81
Query: 265 LFF 267
+
Sbjct: 82 NVY 84
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 34.2 bits (79), Expect = 0.010
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+ L +APWC + + EL ++ +K+ K D +Q+ K + S P
Sbjct: 17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK-LKIVKIDVDENQE--TAGKYGVMSIP 73
Query: 263 TILFF 267
T+L
Sbjct: 74 TLLVL 78
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 34.2 bits (79), Expect = 0.010
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P LV +A WC CQ M A+ + +KV K D + K K++ P +
Sbjct: 27 PVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDPNPTTVKKYKVE--GVPAL 83
Query: 265 LFF 267
Sbjct: 84 RLV 86
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 34.1 bits (79), Expect = 0.011
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P +V +APWC C+ + ELA + +G + V K D + + S PT+
Sbjct: 20 PVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDEAPG--IATQYNIRSIPTV 76
Query: 265 LFF 267
LFF
Sbjct: 77 LFF 79
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 34.2 bits (79), Expect = 0.011
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P +V +A WC C+ + ++ K G V + K D D + A + ++ + PT+
Sbjct: 33 PVVVDFHAQWCGPCKILGPRLEKMVAKQHGK-VVMAKVDID-DHTDLA-IEYEVSAVPTV 89
Query: 265 LFF 267
L
Sbjct: 90 LAM 92
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 34.9 bits (80), Expect = 0.012
Identities = 11/104 (10%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 195 NLARLDHRQEPWLVVLYAPWCQFCQAMEG---SYVELADKLAGNGVKVGKFRADGDQKEY 251
++ ++ ++ + CQ + S + + + + + + + + Y
Sbjct: 36 ECGQMQNK--WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRY 93
Query: 252 AKQKLQLGSFPTILFFPKHSSKPIK---YPSERRDVDSLMAFVD 292
Q +LG FP + + + + +D + F+
Sbjct: 94 I-QFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLG 136
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 34.9 bits (80), Expect = 0.012
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 17/75 (22%)
Query: 207 LVVLYAPWCQFCQAMEG---SYVELADKLAGNGVKVGKFRADGDQKEYA----------- 252
L + WC +C M+ E + V D QK +
Sbjct: 52 LFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMV---EVDFPQKNHQPEEQRQKNQEL 108
Query: 253 KQKLQLGSFPTILFF 267
K + ++ FP ++F
Sbjct: 109 KAQYKVTGFPELVFI 123
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 33.8 bits (78), Expect = 0.012
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P LV +APWC C+ + ELA + G VKV K D + + + S PT+
Sbjct: 21 PVLVDFWAPWCGPCRMIAPIIEELAKEYEGK-VKVVKVNVDENPN--TAAQYGIRSIPTL 77
Query: 265 LFF 267
L F
Sbjct: 78 LLF 80
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 34.3 bits (79), Expect = 0.013
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LV +A WC + + E+AD+ G + V K D + K ++ PT+
Sbjct: 42 AILVDFWAEWCGPAKMIAPILDEIADEYQGK-LTVAKLNIDQNPGTAPKYGIR--GIPTL 98
Query: 265 LFF 267
L F
Sbjct: 99 LLF 101
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 33.4 bits (77), Expect = 0.016
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P LV +APWC C+ + E+A + +K K D + + S PTI
Sbjct: 21 PVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNTDESPN--VASEYGIRSIPTI 77
Query: 265 LFF 267
+ F
Sbjct: 78 MVF 80
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 33.9 bits (78), Expect = 0.017
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
P LV +A WC C+ + E+A + A + + V K D + + + Q+ S PT+
Sbjct: 32 PVLVDFWATWCGPCKMVAPVLEEIATERATD-LTVAKLDVDTNPE--TARNFQVVSIPTL 88
Query: 265 LFF 267
+ F
Sbjct: 89 ILF 91
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 33.4 bits (77), Expect = 0.019
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LV +A WC C+ + E+AD+ G + V K D + K ++ PT+
Sbjct: 22 AILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQNPGTAPKYGIR--GIPTL 78
Query: 265 LFF 267
L F
Sbjct: 79 LLF 81
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 34.7 bits (79), Expect = 0.024
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
+V +Y + C A+ S + LA + VK K +A A + PT+
Sbjct: 135 TIVVHIYEDGIKGCDALNSSLICLAAEYP--MVKFCKIKASNTG---AGDRFSSDVLPTL 189
Query: 265 LFF 267
L +
Sbjct: 190 LVY 192
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.027
Identities = 38/263 (14%), Positives = 68/263 (25%), Gaps = 70/263 (26%)
Query: 29 CRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 88
R++ LR+AL LR P V + +G+ G G K
Sbjct: 132 SRLQPYLKLRQALLELR------------------PAKNV--LIDGV-LGSG---KTWVA 167
Query: 89 ANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKEC 148
+V + MD I ++++ VL + + D
Sbjct: 168 LDVCLSY--KVQCKMDFKIF------WLNLKNCNSPETVLEML---QKLLYQIDPNWTSR 216
Query: 149 GLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLV 208
H NIK + + + S+ L L + Q
Sbjct: 217 SDHSSNIKLR----------IHSIQAELRRLLKSKPYE-------NCLLVLLNVQNAKA- 258
Query: 209 VLYAPWCQF---CQAMEGS-YVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
W F C+ + + + ++ D L+ D ++
Sbjct: 259 -----WNAFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMTLTPDEV-KSLLLKY 310
Query: 265 LFFPKHSSKPIKYPSERRDVDSL 287
L +P P E +
Sbjct: 311 L-----DCRPQDLPREVLTTNPR 328
Score = 30.6 bits (68), Expect = 0.66
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 23/104 (22%)
Query: 172 ASEAVADIFNSQN--------LVTLNRTG-------MENLARLDHRQEPWLVVLYAPWCQ 216
+ E + I S++ TL +E + R+++ +L+ +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KFLMSPIKTEQR 103
Query: 217 FCQAMEGSYVELADKLAGNGVKVGKF---RADGDQKEYAKQKLQ 257
M Y+E D+L + K+ R +Q L
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--QPYLKLRQALL 145
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 34.4 bits (79), Expect = 0.029
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
LV +A WC C+ + E+AD+ G + V K + DQ K + PT+
Sbjct: 32 AILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKL--NIDQNPGTAPKYGIRGIPTL 88
Query: 265 LFF 267
L F
Sbjct: 89 LLF 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.034
Identities = 42/255 (16%), Positives = 72/255 (28%), Gaps = 88/255 (34%)
Query: 92 KGNDI----WNFLRTMDVPINSLHS--QGYISIGCEPCTRPVLPGQHEREGRWWWEDAKA 145
+GNDI L+ D + + YI+ RP + +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYIT-ARIMAKRP-FDKKSNSA---LFRAVGE 151
Query: 146 KECGLHKGNIKQEDAAVNGNGNGAGNASEAV---ADIFNS-----QNLVTLNRTGMENLA 197
L A+ G G GN + D++ + +L+ + + L
Sbjct: 152 GNAQLV---------AIFG---GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 198 RLDHRQEP----------WL----------VVLYAP-------------WCQFCQAMEGS 224
R E WL +L P + + + +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 225 YVELADKLAG-----NGVKVGKFRADGDQKE--YAKQKLQLGSFPTILF---------FP 268
EL L G G+ A+ D E + + + T+LF +P
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI----TVLFFIGVRCYEAYP 315
Query: 269 KHSSKPIKYPSERRD 283
++S P PS D
Sbjct: 316 -NTSLP---PSILED 326
Score = 29.2 bits (65), Expect = 1.9
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 41/119 (34%)
Query: 96 IWNFLRTM-DVPINSL---HSQG-Y---------ISIGCEPCTRPVLPGQHEREGRWWWE 141
+ L++ +P ++ HS G Y +SI E V R G
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI--ESLVEVV----FYR-GMTMQV 1795
Query: 142 DAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVADI----------------FNSQN 184
E G + A+N A + EA+ + +N +N
Sbjct: 1796 AVPRDELGRSNYGM----IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Score = 27.3 bits (60), Expect = 7.8
Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 49/135 (36%)
Query: 7 EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVV 66
E AL + S E V V R + RS ++
Sbjct: 1766 EYAALASLADVMSI-ESL------VEVVF--------YRGMTMQVAVPRDELGRSNYGMI 1810
Query: 67 QVDP--------------VFEGLEGGVGSLVKWNPVAN---------VKGN--------D 95
++P V E + G LV+ + N G+ +
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVE---IVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 96 IWNFLRTMDVPINSL 110
+ NF++ + I L
Sbjct: 1868 VLNFIKLQKIDIIEL 1882
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 33.1 bits (75), Expect = 0.046
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 205 PWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 261
P +V+ + CQ+ QA++ + E+ + + + + K +
Sbjct: 46 PLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIML-NLMHETTDKNLSPDG---QYV 101
Query: 262 PTILFF 267
P I+F
Sbjct: 102 PRIMFV 107
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 31.6 bits (71), Expect = 0.098
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 213 PWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQKEYAKQKLQLGSFPTILFF 267
WC C E E ++ +VG+ D ++ L++ + PT+L +
Sbjct: 41 SWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKY 99
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 31.9 bits (72), Expect = 0.17
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 203 QEPWLVV-LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 261
+ +VV +Y + C A+ S LA + VK K RA A +
Sbjct: 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS---NTGAGDRFSSDVL 173
Query: 262 PTILFF 267
PT+L +
Sbjct: 174 PTLLVY 179
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 30.8 bits (68), Expect = 0.50
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 200 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 259
H ++ + A WC CQ + + D++ V+ Q + + +
Sbjct: 194 AHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV--PYVECSPNGPGTPQAQEC-TEAGIT 250
Query: 260 SFPTILF 266
S+PT +
Sbjct: 251 SYPTWII 257
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 30.0 bits (67), Expect = 0.54
Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 174 EAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLY---------APWCQFCQAMEGS 224
+ + + + ++T+ +N L + +LY CQ C E +
Sbjct: 9 DDILQLKDDTGVITVT---ADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKT 65
Query: 225 YVELADKLAGNGVKVGK--FRADGDQKEYAKQKLQLGSFPTILFF-PKHSSKPIKYPSER 281
Y +AD + + F D ++ + L+L + P ++ + P S+K ++ +
Sbjct: 66 YHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKT 125
Query: 282 RD 283
Sbjct: 126 SP 127
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 28.5 bits (63), Expect = 1.1
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 208 VVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
+Y A WC CQ + + D++ V+ Q + + + S+PT +
Sbjct: 16 GTMYGAYWCPHCQDQKELFGAAFDQV--PYVECSPNGPGTPQAQ-ECTEAGITSYPTWII 72
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 28.8 bits (65), Expect = 2.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 157 QEDAAVNGNGNGAGNAS-EAVADIFNSQNLVT 187
+ DA++ G G GAGNA E +
Sbjct: 222 RVDASLAGMGAGAGNAPLEVFIAVAERLGWNH 253
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 28.1 bits (62), Expect = 2.3
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAME 222
+ +P ++ C C+ ME
Sbjct: 38 LGMEYARQHNKPVMLDFTGYGCVNCRKME 66
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 28.1 bits (63), Expect = 3.0
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 159 DAAVNGNGNGAGNAS-EAVADIFNSQNLVTLNRTGMENLAR 198
DA + G G GAGN E + N + + ++ + N+
Sbjct: 216 DATITGMGRGAGNLKMELLLTYLNKHHGLNVDFNVLGNIIT 256
>3byq_A Uncharacterized protein DUF1185; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE PG4; 1.70A {Bordetella bronchiseptica
RB50} SCOP: d.79.9.1
Length = 193
Score = 27.9 bits (62), Expect = 3.3
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 25 HQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVD 69
H +R L +A + + + G R +PV +
Sbjct: 94 HGAVWHEAGGWAMRSVLGEPKAMVPAVKAVATAGYRMMVPVHYIH 138
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 26.5 bits (59), Expect = 9.0
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV 239
L D + +P LV ++ WC C+ E + +LA GV +
Sbjct: 49 RRLTEADLKGKPALVNVWGTWCPSCRV-EHPELT---RLAEQGVVI 90
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 26.1 bits (58), Expect = 9.0
Identities = 10/66 (15%), Positives = 20/66 (30%)
Query: 200 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 259
+P ++ +APWC CQ ++A + K +
Sbjct: 22 SLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVK 81
Query: 260 SFPTIL 265
+F +
Sbjct: 82 TFTQLA 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.430
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,575,573
Number of extensions: 266289
Number of successful extensions: 778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 136
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)