RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022560
(295 letters)
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase
{Escherichia coli [TaxId: 562]}
Length = 215
Score = 92.9 bits (230), Expect = 3e-23
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 1 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRA--WITGQRKDQSPG 58
R L+ +G ++ + KV P+ RALK L A W G R++QS
Sbjct: 103 YRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG- 161
Query: 59 TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI 118
+R+ +PV+ + + K P+ + I+ +L+ + + L +GY+S+
Sbjct: 162 SRANLPVLAIQ----------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSV 211
Query: 119 GC 120
G
Sbjct: 212 GD 213
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 58.2 bits (140), Expect = 2e-11
Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEY 251
+ + R +V + + + + + +
Sbjct: 10 LSFEKTVERFPYSVVKFDIASPYGEKHEA--FTAFSKSAHKATKDLLIATVGVKDYGELE 67
Query: 252 -----AKQKLQLGSFPTILFFPKHSSKPIKYPSER-RDVDSLMAFVD 292
+ K+ +FP+I F ++ + ++ PS +D+L AFV
Sbjct: 68 NKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVS 114
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 52.0 bits (124), Expect = 3e-09
Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 181 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG---- 236
+++ + L+ ++ + + LV + + E + LA+ A +
Sbjct: 2 HTKGALPLD---TVTFYKVIPKSKFVLVKFDTQYPYGEKQDE--FKRLAENSASSDDLLV 56
Query: 237 --VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS-SKPIKYPSERRDVDSLMAFVD 292
V + + + + K KL S+P F P+ Y V ++ ++
Sbjct: 57 AEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAV-KVGAIQRWLK 114
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 51.4 bits (122), Expect = 5e-09
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 194 ENLARLDHRQEPWLVVLYAPWC------QFCQAMEGSYVELADKLAGNGVKVGKFRADGD 247
+N + + E ++ + P + + E A L GV G ++ D
Sbjct: 19 KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD 78
Query: 248 QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
K L +I F + + I+Y E D+L+ F+
Sbjct: 79 AAVAKKLGLT--EEDSIYVFKED--EVIEYDGE-FSADTLVEFLL 118
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 50.8 bits (120), Expect = 3e-08
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 16/99 (16%)
Query: 28 CCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEG---------- 77
+ G A G R+D+ +R++ V +
Sbjct: 111 DIMKTEGLKQALDKHGFDAAFGGARRDEE-KSRAKERVYSFRDSKHRWDPKNQRPELWNV 169
Query: 78 -----GVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLH 111
G ++ P++N DIW ++ +PI L+
Sbjct: 170 YNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLY 208
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 48.7 bits (115), Expect = 4e-08
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
+ L+ YAPWC C+A+ Y EL A + K A D G FPT
Sbjct: 21 KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQG-FPT 79
Query: 264 ILFFPKHS-SKPIKYPSERRDVDSLMAFVD 292
I +P + +P+ Y R V+ L+ F+
Sbjct: 80 IKLYPAGAKGQPVTYSGS-RTVEDLIKFIA 108
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 46.4 bits (109), Expect = 3e-07
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 184 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 243
+++ L + N A + LV YAPWC C+A+ Y + A KL G ++ +
Sbjct: 8 HVLVLRK---SNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAK 64
Query: 244 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
D ++ Q+ + +PTI FF + K + R+ D ++ ++
Sbjct: 65 VDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLK 113
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 45.4 bits (107), Expect = 5e-07
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
Query: 200 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 259
L+ EL + +V AD +Q E + +
Sbjct: 27 RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAV--ADLEQSEAIGDRFNVR 84
Query: 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294
FP L F K S L+ + ++
Sbjct: 85 RFPATLVFTDG--KLRGALSGIHPWAELLTLMRSI 117
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 43.6 bits (102), Expect = 2e-06
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
LV +A WC C+ + E+AD+ K+ + + DQ K + P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 263 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294
T+L F + L F+DA
Sbjct: 77 TLLLFKN--GEVAATKVGALSKGQLKEFLDAN 106
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 43.5 bits (102), Expect = 3e-06
Identities = 10/94 (10%), Positives = 20/94 (21%), Gaps = 4/94 (4%)
Query: 201 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 260
L+ EL + +V + + + +
Sbjct: 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVF--R 91
Query: 261 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294
FP L F + L+ + L
Sbjct: 92 FPATLVFTGG--NYRGVLNGIHPWAELINLMRGL 123
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 43.3 bits (101), Expect = 5e-06
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
+ LV+ YAPWC C+ + +Y ELAD A V + D + + ++ +PT
Sbjct: 31 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE--GYPT 88
Query: 264 ILFFPK-HSSKPIKYPSERRDVDSLMAFVD 292
I+ +P S+ + Y R +DSL F+
Sbjct: 89 IVLYPGGKKSESVVYQGS-RSLDSLFDFIK 117
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 42.1 bits (98), Expect = 6e-06
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 241
S+ ++T+ E+ + ++P LV +A WC CQ M A+ +
Sbjct: 1 SKGVITITDAEFESE--VLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLK---V 55
Query: 242 FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
+ + D +K ++ P + + + D L++F+D
Sbjct: 56 VKLEIDPNPTTVKKYKVEGVPALRLVKG--EQILDSTEGVISKDKLLSFLD 104
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 40.3 bits (93), Expect = 3e-05
Identities = 10/110 (9%), Positives = 26/110 (23%), Gaps = 1/110 (0%)
Query: 182 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 241
N+ L T + ++E + C +C+ G+ + + + +
Sbjct: 5 LDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINS 64
Query: 242 FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
A + ++ S + F
Sbjct: 65 EEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSS-MSAQEIKDFA 113
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 37.5 bits (86), Expect = 3e-04
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 253
N + +P LV +A WC C+ M E A+ A V V K + D+
Sbjct: 8 ANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAK--LNVDENPETT 64
Query: 254 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294
+ + S PT++ F +P+K + + L A + +
Sbjct: 65 SQFGIMSIPTLILFKGG--EPVKQLIGYQPKEQLEAQLADV 103
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 35.8 bits (82), Expect = 7e-04
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
+ V +P C +C + + G K+ + D + L + P I
Sbjct: 5 IEVFTSPTCPYCPMAI---EVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61
Query: 267 FPKHSSKPIKYPSERRDVDSLMAFVDAL 294
+++ + L ++
Sbjct: 62 NGV-----VRF-VGAPSREELFEAINDE 83
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 36.4 bits (83), Expect = 0.001
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 253
+ P +V+++ WC C+A++ + E + + V + +++ +
Sbjct: 16 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFV-MVNLEDEEEPKDE 74
Query: 254 QKLQLGSFPTILFFPKHSSKPIKY 277
G + + F S K
Sbjct: 75 DFSPDGGYIPRILFLDPSGKVHPE 98
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 34.4 bits (78), Expect = 0.004
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 253
E+ + Q+ +V A WC C+ + + ELA K E
Sbjct: 17 EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWN 76
Query: 254 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
+ + PT +F K + + D D L V
Sbjct: 77 VE----AMPTFIFLKD--GKLVDK-TVGADKDGLPTLVA 108
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 33.7 bits (76), Expect = 0.006
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 204 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 263
P LV +APWC C+ + E+A + V + + D+ + + S PT
Sbjct: 20 VPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCV---KLNTDESPNVASEYGIRSIPT 76
Query: 264 ILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
I+ F K + +++ V+
Sbjct: 77 IMVFKGG--KKCETIIGAVPKATIVQTVE 103
>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin
containing protein Txnl5) {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 34.0 bits (77), Expect = 0.006
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 191 TGMENLARL--DHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNG----V 237
+G E R H + WC C E E ++
Sbjct: 7 SGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYC 66
Query: 238 KVGKFRADGDQKEYAKQKLQLGSFPTILFF 267
+VG+ D ++ L++ + PT+L +
Sbjct: 67 QVGEKPYWKDPNNDFRKNLKVTAVPTLLKY 96
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 33.2 bits (75), Expect = 0.010
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+P ++ ++ WC C+AM Y +LA++ + + + ++L + P
Sbjct: 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEE---YLDVIFLKLDCNQENKTLAKELGIRVVP 81
Query: 263 TILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 295
T + + + D L+ + A R
Sbjct: 82 TFKILKE--NSVVGE-VTGAKYDKLLEAIQAAR 111
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 32.9 bits (74), Expect = 0.010
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 253
LA+ +P +V A WC C+ + + L++ AG V + D D
Sbjct: 15 AQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAVAAVA 71
Query: 254 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
+ + + PT + D L A V
Sbjct: 72 EAAGITAMPTFHVYKD--GVKADD-LVGASQDKLKALVA 107
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 119
Score = 33.3 bits (75), Expect = 0.010
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 173 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 232
EAVA +V L ++ + L +APWC C+ M YV+ A+ L
Sbjct: 2 QEAVAP--EDSAVVKLAT---DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL 56
Query: 233 AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
+ + + +Q + + FP++ F R ++++ F+
Sbjct: 57 VEKNITLAQIDCTENQDLCMEHNIP--GFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMI 114
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 31.4 bits (70), Expect = 0.025
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 207 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 266
+ + +P C C A + E+A++ V + + + + + PTI+
Sbjct: 6 IELFTSPMCPHCPAAKRVVEEVANE---MPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62
Query: 267 FPK 269
Sbjct: 63 NGD 65
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 32.0 bits (72), Expect = 0.034
Identities = 15/135 (11%), Positives = 42/135 (31%), Gaps = 7/135 (5%)
Query: 164 GNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAME- 222
+G +AD+F + + + + ++ + CQ +
Sbjct: 3 SGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNR 62
Query: 223 --GSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIK---Y 277
S + + + + + + + + Y Q +LG FP + + + +
Sbjct: 63 DVWSNEAVKNIIREHFIFWQVYHDSEEGQRY-IQFYKLGDFPYVSILDPRTGQKLVEWHQ 121
Query: 278 PSERRDVDSLMAFVD 292
+D + F+
Sbjct: 122 LDVSSFLDQVTGFLG 136
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 31.3 bits (70), Expect = 0.036
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 199 LDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL 258
+V C C + ++ +++ + D Q + +
Sbjct: 17 SGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSN----KYPQAVFLEVDVHQCQGTAATNNI 72
Query: 259 GSFPTILFF 267
+ PT FF
Sbjct: 73 SATPTFQFF 81
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 30.9 bits (69), Expect = 0.082
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 199 LDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL 258
L ++ W C M+ +A+K+ V D + + +L
Sbjct: 18 LSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIY---LVDITEVPDFNKMYEL 74
Query: 259 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
T++FF +K I + + + ++
Sbjct: 75 YDPCTVMFF--FRNKHIMIDLGTGNNNKINWAME 106
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 96
Score = 29.7 bits (66), Expect = 0.12
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 193 MENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA 252
+E + +D + Y+ C C + + +A N G +
Sbjct: 7 LEQIRDID--GDFEFETYYSLSCHNCPDVVQALNLMAVL---NPRIKHTAIDGGTFQNEI 61
Query: 253 KQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
++ + P + K ++ R + ++A VD
Sbjct: 62 TER-NVMGVPAVFVNGK------EFGQGRMTLTEIVAKVD 94
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 29.7 bits (66), Expect = 0.14
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 200 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 259
+ +V A WC C+ ++ + L++K + D D + + ++
Sbjct: 17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF----LEVDVDDCQDVASECEVK 72
Query: 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 294
PT FF K K ++ + + L A ++ L
Sbjct: 73 CMPTFQFF-KKGQKVGEFSG--ANKEKLEATINEL 104
>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
catalytic domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 310
Score = 30.7 bits (68), Expect = 0.18
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 132 HEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNAS-EAVADIFNSQNLVT-LN 189
H R + + + GNG GN + S+ + ++
Sbjct: 225 HPHNDRGTAVA---AAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQID 281
Query: 190 RTGMENLARL 199
+ ++ + R
Sbjct: 282 FSNIDEIRRT 291
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 30.3 bits (67), Expect = 0.18
Identities = 17/117 (14%), Positives = 30/117 (25%), Gaps = 4/117 (3%)
Query: 166 GNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY 225
G+G AVA L E L R+ + L+V WC CQ +
Sbjct: 19 GHGLATEQGAVARFRQKLESNGLPSALTERLQRI--ERRYRLLVAGEMWCPDCQINLAAL 76
Query: 226 VELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 282
+ + + ++ ++ + ER
Sbjct: 77 DFAQRLQPNIELA--IISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERP 131
>d3byqa1 d.79.9.1 (A:2-192) Uncharacterized protein BB2672
{Bordetella bronchiseptica [TaxId: 518]}
Length = 191
Score = 30.1 bits (68), Expect = 0.22
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 3 PDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSE 62
D +EV + G+ E H +R L +A + + + G R
Sbjct: 72 KDNIEVYSKAAIVGVDGEME--HGAVWHEAGGWAMRSVLGEPKAMVPAVKAVATAGYRMM 129
Query: 63 IPVVQVD 69
+PV +
Sbjct: 130 VPVHYIH 136
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 28.7 bits (63), Expect = 0.32
Identities = 8/89 (8%), Positives = 24/89 (26%), Gaps = 3/89 (3%)
Query: 206 WLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTI 264
++V P C +C + A + K+ + + + + + P I
Sbjct: 18 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKI 77
Query: 265 LFFPKHSSKPIKYPSERRDVDSLMAFVDA 293
+ + + + +
Sbjct: 78 VIQVN--GEDRVEFEGAYPEKMFLEKLLS 104
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 28.9 bits (64), Expect = 0.65
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 201 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 260
+ +V +Y + C A+ S LA + VK K RA A +
Sbjct: 118 QKVTTIVVNIYEDGVRGCDALNSSLECLAAE--YPMVKFCKIRASNTG---AGDRFSSDV 172
Query: 261 FPTILFF 267
PT+L +
Sbjct: 173 LPTLLVY 179
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 28.3 bits (62), Expect = 0.72
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 185 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV 239
L TL + + +P L+ +A WC C + G + A + +
Sbjct: 5 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANL 59
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 28.0 bits (61), Expect = 0.91
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 200 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADK 231
++P L+ ++ C C+ E DK
Sbjct: 26 LIGEKPTLIHFWSISCHLCKEAMPQVNEFRDK 57
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 26.7 bits (58), Expect = 1.4
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE 250
T + + E +V +A WC C+ + Y E + + D D+
Sbjct: 6 TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVF----IKVDVDEVS 61
Query: 251 YAKQKLQLGSFPTILFFPK 269
+K + S PT +
Sbjct: 62 EVTEKENITSMPTFKVYKN 80
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin M [TaxId: 3562]}
Length = 104
Score = 26.4 bits (57), Expect = 2.0
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 203 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 262
+ P +V +APWC C+ + ELA + +G + ++ + D+ + + S P
Sbjct: 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAPGIATQYNIRSIP 73
Query: 263 TILFFPKHSSKPIKYPSERRDVDSLMAFVD 292
T+LFF + + +L ++
Sbjct: 74 TVLFFKNG--ERKESIIGAVPKSTLTDSIE 101
>d2qtpa1 d.79.9.1 (A:3-171) Uncharacterized protein SPO0826
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 169
Score = 26.6 bits (59), Expect = 2.4
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 3 PDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSE 62
P+ E G E + PLR+A++ A + +K SPG +
Sbjct: 71 PEQAESYGKSAMVGENGELEHA-AAILHPKLGAPLRKAVEKGAALVPSSKKMGSPGQVLD 129
Query: 63 IPVVQVD 69
+P+ D
Sbjct: 130 VPLGHKD 136
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 26.0 bits (56), Expect = 2.8
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 194 ENLARLDHRQEPWLVVLYAPWCQFCQAM 221
E L + + + +V A WC C+ +
Sbjct: 19 EQLQKANESKTLVVVDFTASWCGPCRFI 46
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 26.8 bits (59), Expect = 2.9
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVEL--ADKLAGNGV---KVGKF-RA 244
G E +ARL H+ + + EL +K A G K G F A
Sbjct: 34 VGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELA 93
Query: 245 DG 246
DG
Sbjct: 94 DG 95
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 26.0 bits (56), Expect = 3.2
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 191 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE 250
+E + + A WC C+ +E ++A V + D D
Sbjct: 14 YSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAY----EFPTVKFAKVDADNNS 69
Query: 251 YAKQKLQLGSFPTILFF 267
K ++ PT +
Sbjct: 70 EIVSKCRVLQLPTFIIA 86
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 26.0 bits (56), Expect = 5.1
Identities = 15/136 (11%), Positives = 37/136 (27%), Gaps = 7/136 (5%)
Query: 67 QVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIG--CEPCT 124
V ++ + +A + + + D+ Y I +
Sbjct: 145 HAQGTICYTISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYG 204
Query: 125 RPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNAS-EAVADIFNSQ 183
+ H + + + D A++ G G+ E+VA++
Sbjct: 205 QKTQINLHCHSTTGV---TEVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESVAEMLEGT 261
Query: 184 NLVT-LNRTGMENLAR 198
T L+ + +
Sbjct: 262 GYTTNLDYDRLHKIRD 277
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 25.9 bits (56), Expect = 6.5
Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 28/187 (14%)
Query: 111 HSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAG 170
G +G + P LP G + + + + + A
Sbjct: 274 GGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNF-------LAL 326
Query: 171 NASEAVADIFNSQNLVTLNRTGMENLARLDHR-QEPWLVVLYAPWCQFCQAMEGSYVELA 229
+ A + L + N L +E V Y +
Sbjct: 327 VRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPE---- 382
Query: 230 DKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIK-YPSERRDVDSLM 288
G + + AK L+LG P ++FP + + P+E ++L
Sbjct: 383 ------GFRA---------LDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLE 427
Query: 289 AFVDALR 295
AF +A+
Sbjct: 428 AFAEAMG 434
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 24.7 bits (54), Expect = 9.4
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 31 VRKVRPLRRALKGLR 45
++R R L+ LR
Sbjct: 95 ESRIRAQRTKLRELR 109
>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 102
Score = 24.4 bits (53), Expect = 10.0
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 260 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 291
I F+ +P+ P + + ++ FV
Sbjct: 65 KLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFV 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.430
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,155,887
Number of extensions: 51442
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 46
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)