BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022562
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
           Protein
          Length = 72

 Score = 40.4 bits (93), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 87  VPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133
           V WT EE +LF  GL K G+  W  IS+  + +RT  QV S+A++YF
Sbjct: 10  VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYF 54


>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
 pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
          Length = 55

 Score = 34.3 bits (77), Expect = 0.079,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 89  WTEEEHKLFLLGLQKVGKGDWRGISRNF 116
           WT EE +    G+QK G+G+W  IS+N+
Sbjct: 5   WTVEESEWVKAGVQKYGEGNWAAISKNY 32


>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
          Length = 67

 Score = 34.3 bits (77), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 71  GVHNNSSRASRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNF 116
           G H   S  +  +K+   WT EE +    G+QK G+G+W  IS+N+
Sbjct: 1   GSHMEDSTTNITKKQ--KWTVEESEWVKAGVQKYGEGNWAAISKNY 44


>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
 pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
          Length = 64

 Score = 33.9 bits (76), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 89  WTEEEHKLFLLGLQKVGKGDWRGISRNF 116
           WT EE +    G+QK G+G+W  IS+N+
Sbjct: 14  WTVEESEWVKAGVQKYGEGNWAAISKNY 41


>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
          Length = 64

 Score = 33.5 bits (75), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 89  WTEEEHKLFLLGLQKVGKGDWRGISRNF 116
           WT EE +    G+QK G+G+W  IS+N+
Sbjct: 14  WTVEESEWVKAGVQKYGEGNWAAISKNY 41


>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
          Length = 63

 Score = 33.5 bits (75), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 89  WTEEEHKLFLLGLQKVGKGDWRGISRNF 116
           WT EE +    G+QK G+G+W  IS+N+
Sbjct: 13  WTVEESEWVKAGVQKYGEGNWAAISKNY 40


>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
           Human Transcriptional Adaptor 2-Like, Isoform B
          Length = 60

 Score = 30.0 bits (66), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 89  WTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133
           WT +E    L  +   G G+W+ ++ N + T+T  +   H  KYF
Sbjct: 11  WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYF 54


>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
           Complex With A Dna Duplex
          Length = 271

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 89  WTEEEHKLFLLGLQKVGKGDWRGI 112
           WT+EE +  L+G+ K G G W  I
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195


>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
           Chromatin- Remodelling Protein Chd1
          Length = 270

 Score = 28.1 bits (61), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 89  WTEEEHKLFLLGLQKVGKGDWRGI 112
           WT+EE +  L+G+ K G G W  I
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.126    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,213,973
Number of Sequences: 62578
Number of extensions: 229983
Number of successful extensions: 403
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 9
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)