Query 022562
Match_columns 295
No_of_seqs 239 out of 564
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 07:30:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.7 1.4E-16 4.8E-21 119.6 7.8 66 83-150 6-71 (72)
2 2yum_A ZZZ3 protein, zinc fing 99.6 2.9E-15 9.9E-20 112.6 6.1 54 84-138 6-64 (75)
3 2yus_A SWI/SNF-related matrix- 99.5 2.6E-15 8.8E-20 115.9 4.6 49 83-133 15-63 (79)
4 2elk_A SPCC24B10.08C protein; 99.5 4.3E-15 1.5E-19 107.7 5.4 48 86-134 9-57 (58)
5 1x41_A Transcriptional adaptor 99.5 1.1E-14 3.7E-19 105.9 5.6 51 84-135 6-56 (60)
6 1guu_A C-MYB, MYB proto-oncoge 99.5 9.2E-14 3.1E-18 97.6 6.6 49 85-134 2-50 (52)
7 1gvd_A MYB proto-oncogene prot 99.4 1.3E-13 4.4E-18 97.0 5.7 47 86-133 3-49 (52)
8 2eqr_A N-COR1, N-COR, nuclear 99.4 2.4E-13 8.4E-18 99.5 7.3 54 79-137 5-58 (61)
9 2d9a_A B-MYB, MYB-related prot 99.4 4.4E-13 1.5E-17 96.8 5.8 50 84-134 6-55 (60)
10 1ity_A TRF1; helix-turn-helix, 99.4 1.3E-12 4.4E-17 97.1 7.4 54 81-135 5-60 (69)
11 1w0t_A Telomeric repeat bindin 99.3 1.5E-12 5E-17 92.2 6.6 47 86-133 2-50 (53)
12 2dim_A Cell division cycle 5-l 99.3 1.7E-12 5.7E-17 96.5 6.1 51 83-134 6-56 (70)
13 3sjm_A Telomeric repeat-bindin 99.3 2.9E-12 9.9E-17 95.1 6.9 49 84-133 9-59 (64)
14 2iw5_B Protein corest, REST co 99.3 3.5E-12 1.2E-16 116.2 5.4 50 82-133 129-178 (235)
15 2yqk_A Arginine-glutamic acid 99.2 1.2E-11 4.3E-16 91.3 7.1 53 81-137 4-56 (63)
16 2din_A Cell division cycle 5-l 99.2 2.3E-11 7.7E-16 89.5 7.2 52 84-138 7-58 (66)
17 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.1E-11 3.8E-16 94.7 5.7 52 81-133 13-67 (73)
18 2ltp_A Nuclear receptor corepr 98.8 1.7E-12 5.9E-17 101.5 0.0 51 84-136 14-64 (89)
19 2crg_A Metastasis associated p 99.2 4.3E-11 1.5E-15 90.3 7.3 46 83-129 5-50 (70)
20 2xag_B REST corepressor 1; ami 99.2 1.3E-11 4.6E-16 122.0 5.5 50 83-134 377-426 (482)
21 1irz_A ARR10-B; helix-turn-hel 99.2 5.5E-11 1.9E-15 89.5 7.2 56 82-139 3-63 (64)
22 1gv2_A C-MYB, MYB proto-oncoge 99.2 2.8E-11 9.5E-16 95.2 5.7 47 86-133 4-50 (105)
23 2k9n_A MYB24; R2R3 domain, DNA 99.1 5.3E-11 1.8E-15 94.6 5.6 47 87-134 2-48 (107)
24 2ckx_A NGTRF1, telomere bindin 99.1 1.4E-10 4.8E-15 90.5 7.8 51 87-137 1-54 (83)
25 2aje_A Telomere repeat-binding 99.1 1.5E-10 5.2E-15 94.1 7.6 57 80-136 7-66 (105)
26 3osg_A MYB21; transcription-DN 99.1 1E-10 3.4E-15 95.6 6.5 51 81-133 6-56 (126)
27 3zqc_A MYB3; transcription-DNA 99.1 1E-10 3.5E-15 95.9 5.8 46 87-133 3-48 (131)
28 2cjj_A Radialis; plant develop 99.1 1.7E-10 5.7E-15 91.9 6.2 52 86-138 8-62 (93)
29 2k9n_A MYB24; R2R3 domain, DNA 99.1 2.4E-10 8.1E-15 90.8 7.0 52 85-138 52-103 (107)
30 1h8a_C AMV V-MYB, MYB transfor 99.1 1.5E-10 5.2E-15 94.2 5.7 48 85-133 26-73 (128)
31 2roh_A RTBP1, telomere binding 99.0 6.4E-10 2.2E-14 92.7 9.2 58 80-137 25-85 (122)
32 1wgx_A KIAA1903 protein; MYB D 99.0 1.5E-10 5.1E-15 89.0 4.6 45 87-132 9-56 (73)
33 2juh_A Telomere binding protei 99.0 8.9E-10 3E-14 91.7 8.1 57 81-137 12-71 (121)
34 1gv2_A C-MYB, MYB proto-oncoge 99.0 5E-10 1.7E-14 88.0 5.7 47 85-133 55-101 (105)
35 3osg_A MYB21; transcription-DN 99.0 9.5E-10 3.3E-14 89.7 7.2 51 85-137 61-111 (126)
36 2llk_A Cyclin-D-binding MYB-li 98.9 1.3E-09 4.5E-14 83.3 5.9 45 83-130 20-64 (73)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.7E-09 5.9E-14 82.3 6.3 46 85-132 7-55 (72)
38 3zqc_A MYB3; transcription-DNA 98.9 1.5E-09 5E-14 89.0 5.9 51 85-137 53-103 (131)
39 1h89_C C-MYB, MYB proto-oncoge 98.9 1.9E-09 6.4E-14 90.6 5.6 48 85-133 57-104 (159)
40 4a69_C Nuclear receptor corepr 98.9 1.1E-09 3.8E-14 86.8 3.7 63 64-129 22-84 (94)
41 1h8a_C AMV V-MYB, MYB transfor 98.9 1.7E-09 6E-14 87.9 4.7 47 84-132 77-123 (128)
42 4eef_G F-HB80.4, designed hema 98.8 1.2E-09 4.2E-14 84.4 1.1 47 83-130 17-66 (74)
43 1h89_C C-MYB, MYB proto-oncoge 98.7 1.2E-08 4E-13 85.7 4.3 47 84-132 108-154 (159)
44 1x58_A Hypothetical protein 49 98.5 1.3E-07 4.5E-12 70.8 6.1 47 84-131 6-54 (62)
45 1ign_A Protein (RAP1); RAP1,ye 98.3 2.9E-07 9.8E-12 84.6 4.7 50 85-135 7-61 (246)
46 1fex_A TRF2-interacting telome 97.6 5.7E-05 1.9E-09 55.2 4.5 48 86-133 2-57 (59)
47 2xag_B REST corepressor 1; ami 97.4 2E-05 6.9E-10 78.2 0.0 41 87-129 190-230 (482)
48 1ofc_X ISWI protein; nuclear p 97.4 0.00015 5.2E-09 68.2 5.8 48 85-132 211-272 (304)
49 1ofc_X ISWI protein; nuclear p 97.3 0.00034 1.2E-08 65.8 6.8 49 87-136 111-159 (304)
50 3hm5_A DNA methyltransferase 1 96.9 0.0017 5.8E-08 51.9 6.4 43 87-131 31-78 (93)
51 4b4c_A Chromodomain-helicase-D 96.8 0.0025 8.6E-08 54.9 6.8 51 86-137 134-197 (211)
52 4b4c_A Chromodomain-helicase-D 96.7 0.002 6.9E-08 55.5 5.7 54 83-136 4-60 (211)
53 2ebi_A DNA binding protein GT- 96.7 0.002 6.8E-08 49.0 4.7 54 83-137 1-67 (86)
54 1ug2_A 2610100B20RIK gene prod 96.5 0.0067 2.3E-07 48.8 7.0 50 82-132 29-80 (95)
55 2xb0_X Chromo domain-containin 95.3 0.011 3.6E-07 54.8 3.7 27 87-113 169-195 (270)
56 2y9y_A Imitation switch protei 95.2 0.025 8.4E-07 54.8 5.9 48 88-136 125-173 (374)
57 2lr8_A CAsp8-associated protei 93.9 0.0047 1.6E-07 47.3 0.0 47 84-132 12-60 (70)
58 4iej_A DNA methyltransferase 1 94.7 0.07 2.4E-06 42.7 6.3 51 87-138 31-85 (93)
59 2hzd_A Transcriptional enhance 94.0 0.083 2.8E-06 41.4 5.4 47 84-131 4-70 (82)
60 2y9y_A Imitation switch protei 94.0 0.069 2.4E-06 51.7 5.9 51 85-136 227-291 (374)
61 1ign_A Protein (RAP1); RAP1,ye 81.5 2 6.9E-05 39.6 5.5 28 108-136 173-200 (246)
62 2xb0_X Chromo domain-containin 80.5 3.7 0.00013 37.9 6.9 43 87-129 4-49 (270)
63 2li6_A SWI/SNF chromatin-remod 49.3 18 0.00061 28.7 4.1 29 107-136 71-99 (116)
64 2eqy_A RBP2 like, jumonji, at 40.6 56 0.0019 26.1 5.9 34 107-141 64-101 (122)
65 2jrz_A Histone demethylase jar 37.6 34 0.0012 27.2 4.1 32 107-139 62-97 (117)
66 2lm1_A Lysine-specific demethy 35.1 72 0.0025 24.5 5.5 32 107-139 66-101 (107)
67 1kkx_A Transcription regulator 33.0 31 0.0011 27.9 3.2 31 107-138 70-100 (123)
68 2cxy_A BAF250B subunit, HBAF25 32.8 54 0.0018 26.2 4.6 32 107-139 73-108 (125)
69 1ig6_A MRF-2, modulator recogn 32.0 25 0.00085 27.3 2.4 29 107-136 55-88 (107)
70 1c20_A DEAD ringer protein; DN 30.5 62 0.0021 25.9 4.6 34 107-141 74-112 (128)
71 2rq5_A Protein jumonji; develo 27.3 33 0.0011 27.8 2.4 32 107-139 64-100 (121)
72 2lc3_A E3 ubiquitin-protein li 24.1 44 0.0015 26.4 2.5 58 79-137 6-81 (88)
73 2kk0_A AT-rich interactive dom 24.1 82 0.0028 25.9 4.3 32 107-139 86-122 (145)
74 2jxj_A Histone demethylase jar 23.3 42 0.0014 25.4 2.2 29 107-136 58-90 (96)
75 3o2i_A Uncharacterized protein 23.1 50 0.0017 27.0 2.7 26 86-111 48-74 (125)
76 4ard_A Capsid protein P27; vir 23.0 81 0.0028 25.9 4.0 47 107-157 38-84 (116)
77 2gu0_A Nonstructural protein 2 21.7 29 0.00098 32.7 1.1 36 105-148 219-254 (312)
78 4g0a_A Non-structural protein 21.5 32 0.0011 32.4 1.4 55 87-149 195-258 (317)
79 1x3u_A Transcriptional regulat 21.1 1.7E+02 0.0058 20.0 4.9 45 89-138 17-61 (79)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=1.4e-16 Score=119.55 Aligned_cols=66 Identities=33% Similarity=0.527 Sum_probs=60.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhhcccccCCCcccc
Q 022562 83 RKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFD 150 (295)
Q Consensus 83 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~~~~k~krR~Sl~d 150 (295)
..+..+||+|||++|++++++||. +|..|| .+|++||..||+.||++||.+..+.+..+++.+||+
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia-~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR-RWTKIS-KLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 345668999999999999999999 999999 799999999999999999999988888888999885
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.9e-15 Score=112.60 Aligned_cols=54 Identities=35% Similarity=0.489 Sum_probs=48.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCC-----CChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGK-----GDWRGISRNFVKTRTPTQVASHAQKYFLRRSN 138 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGk-----GdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~~ 138 (295)
.+..+||+|||++|+++|++||. ++|..|| .+|++||..||+.||++||.++.+
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA-~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHH-HHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHH-HHhCCCCHHHHHHHHHHHHHHHHh
Confidence 34557999999999999999996 6999999 899999999999999999987654
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.55 E-value=2.6e-15 Score=115.94 Aligned_cols=49 Identities=31% Similarity=0.483 Sum_probs=44.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 83 RKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 83 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
+....+||+|||++|++||++|| ++|..|| .+|++||..||+.||++|+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTSC
T ss_pred cccCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHhc
Confidence 34467899999999999999999 6999999 7999999999999998763
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=4.3e-15 Score=107.73 Aligned_cols=48 Identities=25% Similarity=0.585 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHH
Q 022562 86 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYFL 134 (295)
Q Consensus 86 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~-TRT~~QVrSHAQKYF~ 134 (295)
..+||+|||++|++++++||.++|..|| .+|+ +||..||+.|+++||+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHcc
Confidence 3469999999999999999988999999 7999 9999999999999986
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1.1e-14 Score=105.94 Aligned_cols=51 Identities=27% Similarity=0.532 Sum_probs=46.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 135 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r 135 (295)
-...+||+|||++|++++++||.++|..|| .+|++||..||+.||++||..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHccC
Confidence 345579999999999999999988999999 799999999999999999864
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.46 E-value=9.2e-14 Score=97.63 Aligned_cols=49 Identities=29% Similarity=0.460 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 134 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~ 134 (295)
+.++||+||+++|++++++||.++|..|| .+|++||..||+.||++|+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHH-HTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHHcC
Confidence 34679999999999999999999999999 79999999999999998863
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.43 E-value=1.3e-13 Score=97.03 Aligned_cols=47 Identities=28% Similarity=0.438 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 86 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 86 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
.++||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998999999 7999999999999999875
No 8
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=99.52 Aligned_cols=54 Identities=19% Similarity=0.387 Sum_probs=47.8
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022562 79 ASRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRS 137 (295)
Q Consensus 79 ~~~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~ 137 (295)
..++|+...+||+|||++|++||.+||+ +|..|| .+|++||..||+.| ||...+
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v~~---Yy~~Kk 58 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCVLY---YYLTKK 58 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHHHH---HHHHTC
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHH---HHHhcC
Confidence 4578899999999999999999999998 999999 89999999999875 555443
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=4.4e-13 Score=96.80 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=45.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 134 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~ 134 (295)
.+..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHH-HHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHccCCCHHHHHHHHHHHcC
Confidence 455689999999999999999977999999 79999999999999988753
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.36 E-value=1.3e-12 Score=97.05 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=49.1
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC--CCCHHHHHHHHHHHHHH
Q 022562 81 RERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYFLR 135 (295)
Q Consensus 81 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~--TRT~~QVrSHAQKYF~r 135 (295)
..+++..+||+||+++|++++++||.++|..|| .+++ +||..||+.+|.+|+..
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHH-HHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHH-HHcCcCCCCHHHHHHHHHHHcCC
Confidence 456778889999999999999999988999999 7999 99999999999988654
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.35 E-value=1.5e-12 Score=92.25 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC--CCCHHHHHHHHHHHH
Q 022562 86 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYF 133 (295)
Q Consensus 86 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~--TRT~~QVrSHAQKYF 133 (295)
..+||+||+++|++++++||.++|..|| .+++ +||..||+.+|.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988999999 7899 999999999998875
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=96.50 Aligned_cols=51 Identities=18% Similarity=0.450 Sum_probs=46.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022562 83 RKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 134 (295)
Q Consensus 83 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~ 134 (295)
..+..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+.
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHH-HHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHhcCCCHHHHHHHHHHHcC
Confidence 4556789999999999999999988999999 79999999999999988753
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.32 E-value=2.9e-12 Score=95.11 Aligned_cols=49 Identities=29% Similarity=0.478 Sum_probs=42.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC--CCCHHHHHHHHHHHH
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYF 133 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~--TRT~~QVrSHAQKYF 133 (295)
.+..+||+||+++|++++++||.++|..|| .+++ +||..||+.+|.+|.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAIS-KNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHH-hhcCCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999999999999 5654 899999999998764
No 14
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.26 E-value=3.5e-12 Score=116.23 Aligned_cols=50 Identities=28% Similarity=0.482 Sum_probs=45.7
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 82 ERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 82 ~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
..+...+||+||+++|++||.+||+ ||..|| .+|+|||..||+.||++|.
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IA-k~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHH-HHHSSCCHHHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 3466788999999999999999998 999999 7999999999999998774
No 15
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=91.32 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=44.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022562 81 RERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRS 137 (295)
Q Consensus 81 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~ 137 (295)
+.+.....||+||+++|++||.+||+ ||..|++++|++||..||.. -||...+
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~---fYY~wKk 56 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELIT---FYYYWKK 56 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHH---HHHHHHC
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHH---HHhcccC
Confidence 44566678999999999999999999 99999954899999999986 4555443
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.3e-11 Score=89.46 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=45.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSN 138 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~~ 138 (295)
.+..+||.||+++|++++++||. +|..||+ +++ ||..||+.||++|+....+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhc
Confidence 34467999999999999999999 9999994 665 9999999999999877654
No 17
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.22 E-value=1.1e-11 Score=94.71 Aligned_cols=52 Identities=25% Similarity=0.490 Sum_probs=45.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 81 RERKRGVPWTEEEHKLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 81 ~~rkk~~~WTeEEh~~FLegL~kyGk---GdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
+.+....+||.||+++|++||++||+ .+|..|| .+|++||..||+.||+++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 44556778999999999999999994 4899999 8999999999999998764
No 18
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-12 Score=101.48 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=45.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 136 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl 136 (295)
-+.++||+||+++|++++++||. +|..|| .+|++||..||+.||++|+.++
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA-~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIA-RMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 34567999999999999999999 999999 7999999999999999886543
No 19
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.18 E-value=4.3e-11 Score=90.29 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=42.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHH
Q 022562 83 RKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHA 129 (295)
Q Consensus 83 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHA 129 (295)
|+....||+||+++|++||.+||+ ||..|++++|++||..||..++
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHH
Confidence 577788999999999999999999 9999995489999999999865
No 20
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.18 E-value=1.3e-11 Score=121.98 Aligned_cols=50 Identities=28% Similarity=0.486 Sum_probs=45.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022562 83 RKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 134 (295)
Q Consensus 83 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~ 134 (295)
.+...+||+||+.+|++||.+||+ ||+.|| .+|+|||..||++|+++|+.
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA-~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHH-HHHSSCCHHHHHHHHHHTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHhCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999 999999 79999999999999987643
No 21
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.17 E-value=5.5e-11 Score=89.52 Aligned_cols=56 Identities=30% Similarity=0.477 Sum_probs=48.7
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCC---hhhhhhhhcC--CCCHHHHHHHHHHHHHHhhhc
Q 022562 82 ERKRGVPWTEEEHKLFLLGLQKVGKGD---WRGISRNFVK--TRTPTQVASHAQKYFLRRSNL 139 (295)
Q Consensus 82 ~rkk~~~WTeEEh~~FLegL~kyGkGd---Wk~IAr~~V~--TRT~~QVrSHAQKYF~rl~~~ 139 (295)
.+|....||+|+|++|++|++++|. + |++|. .+++ ..|..||+||.|||+.++.+.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il-~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKIL-DLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHH-HHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4678889999999999999999994 5 88998 5765 579999999999999988764
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.16 E-value=2.8e-11 Score=95.19 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 86 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 86 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
.++||+||+++|++++++||.++|..|| .+|++||..||+.|+++|+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhcc
Confidence 4679999999999999999998999999 7999999999999998875
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.12 E-value=5.3e-11 Score=94.58 Aligned_cols=47 Identities=32% Similarity=0.451 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022562 87 VPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 134 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~ 134 (295)
+.||+||+++|++++++||.++|..|| .+|++||..||+.||.+|+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHH-HHTTTSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHh-hhcCCCCHHHHHHHHHHHHc
Confidence 569999999999999999998999999 79999999999999988753
No 24
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.12 E-value=1.4e-10 Score=90.54 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhh---hcCCCCHHHHHHHHHHHHHHhh
Q 022562 87 VPWTEEEHKLFLLGLQKVGKGDWRGISRN---FVKTRTPTQVASHAQKYFLRRS 137 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~---~V~TRT~~QVrSHAQKYF~rl~ 137 (295)
.+||+||++.|++|+++||.|+|..|++. ++..||..||+.+|.+++.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 37999999999999999999999999954 3789999999999998876544
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.10 E-value=1.5e-10 Score=94.11 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=48.5
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhh---cCCCCHHHHHHHHHHHHHHh
Q 022562 80 SRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRR 136 (295)
Q Consensus 80 ~~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~---V~TRT~~QVrSHAQKYF~rl 136 (295)
...+++..+||+||++.|++|+++||.|+|..|++.+ +..||..||+.+|.+++.+-
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3567888899999999999999999999999999643 27899999999999876543
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.10 E-value=1e-10 Score=95.56 Aligned_cols=51 Identities=20% Similarity=0.383 Sum_probs=46.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 81 RERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 81 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
....+.++||+||+++|++++++||. +|..|| .++++||..||+.||.+|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhc
Confidence 44566778999999999999999999 999999 7999999999999999886
No 27
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.08 E-value=1e-10 Score=95.89 Aligned_cols=46 Identities=26% Similarity=0.455 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 87 VPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
++||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhcc
Confidence 579999999999999999988999999 7999999999999999886
No 28
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.07 E-value=1.7e-10 Score=91.87 Aligned_cols=52 Identities=29% Similarity=0.503 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022562 86 GVPWTEEEHKLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKYFLRRSN 138 (295)
Q Consensus 86 ~~~WTeEEh~~FLegL~kyGk---GdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~~ 138 (295)
..+||.||+++|+++|.+||+ .+|..|| .+|++||..||+.||++++.....
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA-~~vpGRT~~q~k~ry~~l~~dv~~ 62 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEILVEDIKY 62 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHHHHHH
Confidence 457999999999999999985 4799999 899999999999999988766543
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.06 E-value=2.4e-10 Score=90.81 Aligned_cols=52 Identities=27% Similarity=0.482 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSN 138 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~~ 138 (295)
+.++||+||+.+|++++++||. +|..|| .+|++||..||+.|+..+..+..+
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKIS-KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHH-HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 4578999999999999999998 999999 799999999999999877666544
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.05 E-value=1.5e-10 Score=94.20 Aligned_cols=48 Identities=27% Similarity=0.457 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
+.++||+||+++|++++++||.++|..|| .++++||..||+.||++|+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHH-HHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHH-HHhcCCcHHHHHHHHHHhc
Confidence 45679999999999999999998999999 8999999999999998875
No 31
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.05 E-value=6.4e-10 Score=92.67 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=49.9
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhh---cCCCCHHHHHHHHHHHHHHhh
Q 022562 80 SRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRRS 137 (295)
Q Consensus 80 ~~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~---V~TRT~~QVrSHAQKYF~rl~ 137 (295)
...|++..+||+||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++..-.
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 3556778899999999999999999999999999643 388999999999998875543
No 32
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.03 E-value=1.5e-10 Score=89.01 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CChhhhhhhhcCCCCHHHHHHHHHHH
Q 022562 87 VPWTEEEHKLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKY 132 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~kyGk---GdWk~IAr~~V~TRT~~QVrSHAQKY 132 (295)
..||+||+++|++||..|++ ++|..|| .+|++||..||+.|++..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA-~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 45999999999999999997 5899999 899999999999988754
No 33
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.00 E-value=8.9e-10 Score=91.69 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=49.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhh---cCCCCHHHHHHHHHHHHHHhh
Q 022562 81 RERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRRS 137 (295)
Q Consensus 81 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~---V~TRT~~QVrSHAQKYF~rl~ 137 (295)
..+++..+||+||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++....
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 457778899999999999999999999999999654 489999999999998876543
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.98 E-value=5e-10 Score=88.01 Aligned_cols=47 Identities=23% Similarity=0.572 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
+.++||+||+++|++++++||. +|..|| .+|++||..||+.|+..+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHH-TTCTTCCHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998 999999 7999999999999987653
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.97 E-value=9.5e-10 Score=89.75 Aligned_cols=51 Identities=25% Similarity=0.471 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRS 137 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~ 137 (295)
+.++||+||+++|++++++||. +|..|| .++++||..||+.||..+..++.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIA-KFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHhcC
Confidence 4568999999999999999997 999999 79999999999999987765544
No 36
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=83.27 Aligned_cols=45 Identities=24% Similarity=0.300 Sum_probs=40.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHH
Q 022562 83 RKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQ 130 (295)
Q Consensus 83 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQ 130 (295)
.-+.++||+||++++++++++||. +|..|| .++ +||..||+.+|.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA-~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIG-AAL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHH-HHH-TSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHH-HHh-CCCHHHHHHHHH
Confidence 345568999999999999999998 699999 688 999999999885
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.91 E-value=1.7e-09 Score=82.29 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhcCCCCHHHHHHHHHHH
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKY 132 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGk---GdWk~IAr~~V~TRT~~QVrSHAQKY 132 (295)
+...||.||+++|..+|.+|+. .+|.+|| .++ .||..||+.||+++
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA-~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIA-HEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHH-TSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHh-CCCHHHHHHHHHHH
Confidence 3457999999999999999995 4699999 688 69999999998765
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.90 E-value=1.5e-09 Score=89.02 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRS 137 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~ 137 (295)
+.++||+||+++|++++.+||. +|..|| .+|++||..||+.||..|+.+..
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIA-KLIPGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHT-TTSTTCCHHHHHHHHHHTTGGGC
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHh
Confidence 3458999999999999999997 999999 79999999999999988765543
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.87 E-value=1.9e-09 Score=90.55 Aligned_cols=48 Identities=27% Similarity=0.399 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
+.++||+||+.+|++++++||.++|..|| .++++||..||+.|+++|+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHh
Confidence 45789999999999999999988999999 7999999999999998875
No 40
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.86 E-value=1.1e-09 Score=86.83 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=49.3
Q ss_pred CcccCCCCccCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHH
Q 022562 64 GYASADDGVHNNSSRASRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHA 129 (295)
Q Consensus 64 gY~S~dd~v~~s~~~~~~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHA 129 (295)
.|++.+++|.--. .....|+....||+|||++|.+++.+||+ +|..|| +++++||..||..|+
T Consensus 22 ~f~d~n~lv~dp~-~~~~~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 22 KFINMNGLMADPM-KVYKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLYY 84 (94)
T ss_dssp CCBCTTSBBSCHH-HHHHHHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHHHHH
T ss_pred eecccCCcccCHH-HHHhccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence 4555444443211 12345677889999999999999999999 999998 899999999999854
No 41
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.85 E-value=1.7e-09 Score=87.94 Aligned_cols=47 Identities=26% Similarity=0.551 Sum_probs=42.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 132 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKY 132 (295)
-+.++||+||+++|++++++||. +|..|| .+|++||..||+.|+..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHG-GGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998 999999 799999999999988644
No 42
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.77 E-value=1.2e-09 Score=84.42 Aligned_cols=47 Identities=34% Similarity=0.680 Sum_probs=40.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhhcCCCCHHHHHHHHH
Q 022562 83 RKRGVPWTEEEHKLFLLGLQKVGKG---DWRGISRNFVKTRTPTQVASHAQ 130 (295)
Q Consensus 83 rkk~~~WTeEEh~~FLegL~kyGkG---dWk~IAr~~V~TRT~~QVrSHAQ 130 (295)
+..+..||.||+++|..||.+|+++ +|.+|| .+|++||..||+.|+|
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA-~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVA-QYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSSCSSCCSSSTTTG-GGSCSSCHHHHHGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHcCCCCHHHHHHHHH
Confidence 4556789999999999999999986 899999 8999999999999986
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.67 E-value=1.2e-08 Score=85.67 Aligned_cols=47 Identities=23% Similarity=0.549 Sum_probs=42.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 132 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKY 132 (295)
.+..+||+||+++|++++++||. +|..|| .+|++||..||+.|+..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCC-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998 999999 799999999999988643
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.53 E-value=1.3e-07 Score=70.85 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhh--hhcCCCCHHHHHHHHHH
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGKGDWRGISR--NFVKTRTPTQVASHAQK 131 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr--~~V~TRT~~QVrSHAQK 131 (295)
++..+||+||++.+++|+++||+ .|..|+. .|+..||...++..+.+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~ 54 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR 54 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHH
Confidence 35567999999999999999999 9999995 37789999999997753
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.34 E-value=2.9e-07 Score=84.64 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC-----hhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGKGD-----WRGISRNFVKTRTPTQVASHAQKYFLR 135 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGkGd-----Wk~IAr~~V~TRT~~QVrSHAQKYF~r 135 (295)
+..+||+||++.+++.+++||..+ |..|| .+++.||..||+.||.+|+.+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHhh
Confidence 345799999999999999998854 99999 799999999999999988754
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.62 E-value=5.7e-05 Score=55.24 Aligned_cols=48 Identities=10% Similarity=0.273 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 022562 86 GVPWTEEEHKLFLLGLQKV--------GKGDWRGISRNFVKTRTPTQVASHAQKYF 133 (295)
Q Consensus 86 ~~~WTeEEh~~FLegL~ky--------GkGdWk~IAr~~V~TRT~~QVrSHAQKYF 133 (295)
..+||+||+..+++.|.+| |..-|+.|++..+..+|-.++|.|+.||+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999 76799999954799999999999998864
No 47
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.43 E-value=2e-05 Score=78.21 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHH
Q 022562 87 VPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHA 129 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHA 129 (295)
..||+||+.+|.+||.+||+ +|..|+ .+|++||..+|..|+
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~-~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQ-QMLPDKSIASLVKFY 230 (482)
T ss_dssp -------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHH-HHcCCCCHHHHHHHh
Confidence 46999999999999999999 999999 799999999999864
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.41 E-value=0.00015 Score=68.23 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhh-----------hhcCCCCHHHHHHHHHHH
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGK---GDWRGISR-----------NFVKTRTPTQVASHAQKY 132 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGk---GdWk~IAr-----------~~V~TRT~~QVrSHAQKY 132 (295)
++..||+|||+.||-+|.+||. |+|..|.. -|+.+||+.++..|++--
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 5567999999999999999999 99999952 389999999999999643
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.31 E-value=0.00034 Score=65.85 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 022562 87 VPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 136 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl 136 (295)
.-||..+-..|+.|+.+||+.+|..|| ..|+++|..+|+.|++-|+.+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA-~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHT-TSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhH
Confidence 359999999999999999999999999 7999999999999998776655
No 50
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.93 E-value=0.0017 Score=51.86 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhc-----CCCCHHHHHHHHHH
Q 022562 87 VPWTEEEHKLFLLGLQKVGKGDWRGISRNFV-----KTRTPTQVASHAQK 131 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V-----~TRT~~QVrSHAQK 131 (295)
..||.||...+++.+++||- +|-.|+ +.. +.||..+++.++-.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~-DRy~~~~~~~Rt~EdLK~RyY~ 78 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIH-DRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHH-HHSCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-Ceeeeh-hhhccCCCCCCCHHHHHHHHHH
Confidence 67999999999999999999 999999 555 57999999996533
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.77 E-value=0.0025 Score=54.89 Aligned_cols=51 Identities=24% Similarity=0.530 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhh-------------hcCCCCHHHHHHHHHHHHHHhh
Q 022562 86 GVPWTEEEHKLFLLGLQKVGKGDWRGISRN-------------FVKTRTPTQVASHAQKYFLRRS 137 (295)
Q Consensus 86 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~-------------~V~TRT~~QVrSHAQKYF~rl~ 137 (295)
...||++||+.||.|+.+||.|+|..|-.+ +..+++..++..++ .|++++-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~-~~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRA-DYLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHH-HHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHH-HHHHHHH
Confidence 456999999999999999999999999631 12456677888888 4766654
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.71 E-value=0.002 Score=55.49 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=42.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC--CCChhhhhhh-hcCCCCHHHHHHHHHHHHHHh
Q 022562 83 RKRGVPWTEEEHKLFLLGLQKVG--KGDWRGISRN-FVKTRTPTQVASHAQKYFLRR 136 (295)
Q Consensus 83 rkk~~~WTeEEh~~FLegL~kyG--kGdWk~IAr~-~V~TRT~~QVrSHAQKYF~rl 136 (295)
+.+...||+.|-+.|+.|+.+|| .++|..|++. -+..||...|+.+++-+..+.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 56677899999999999999999 6899999842 256899999998887766553
No 53
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.66 E-value=0.002 Score=49.01 Aligned_cols=54 Identities=19% Similarity=0.396 Sum_probs=40.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC---------CCChhhhhhhhcC----CCCHHHHHHHHHHHHHHhh
Q 022562 83 RKRGVPWTEEEHKLFLLGLQKVG---------KGDWRGISRNFVK----TRTPTQVASHAQKYFLRRS 137 (295)
Q Consensus 83 rkk~~~WTeEEh~~FLegL~kyG---------kGdWk~IAr~~V~----TRT~~QVrSHAQKYF~rl~ 137 (295)
+++...||.+|-..||++....- +..|..|| +.+. .||+.||+..+.+-...-.
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia-~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQIS-SKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 45677899999999999987532 13899999 4543 6999999998865444433
No 54
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.51 E-value=0.0067 Score=48.78 Aligned_cols=50 Identities=24% Similarity=0.385 Sum_probs=44.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhhcCCCCHHHHHHHHHHH
Q 022562 82 ERKRGVPWTEEEHKLFLLGLQKVGK--GDWRGISRNFVKTRTPTQVASHAQKY 132 (295)
Q Consensus 82 ~rkk~~~WTeEEh~~FLegL~kyGk--GdWk~IAr~~V~TRT~~QVrSHAQKY 132 (295)
.-+.-+.||.||++..|...++-|. ..|..|| ..++.|++.||..+.|..
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA-~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVIS-QQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH-HHHSSCCHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHH-HHHccCCHHHHHHHHHHH
Confidence 3467788999999999999999984 5899999 799999999999998864
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.29 E-value=0.011 Score=54.83 Aligned_cols=27 Identities=41% Similarity=0.837 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhh
Q 022562 87 VPWTEEEHKLFLLGLQKVGKGDWRGIS 113 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~kyGkGdWk~IA 113 (295)
+.|+.+|+..||.||-+||.|.|..|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 469999999999999999999999996
No 56
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.15 E-value=0.025 Score=54.78 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHHHh
Q 022562 88 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYFLRR 136 (295)
Q Consensus 88 ~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~-TRT~~QVrSHAQKYF~rl 136 (295)
-||..+=..|+.|+.+||+.+...|| ..|. ++|..+|+.+++-|+.+.
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA-~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIA-RELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHH-SSCCCSSSHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHH-HHHccCCCHHHHHHHHHHHHHhh
Confidence 59999999999999999999999999 7887 999999999887666544
No 57
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.87 E-value=0.0047 Score=47.27 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=40.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhhcCCCCHHHHHHHHHHH
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGK--GDWRGISRNFVKTRTPTQVASHAQKY 132 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGk--GdWk~IAr~~V~TRT~~QVrSHAQKY 132 (295)
..-+.||.|||+..|...++-|. ..|..|| ..+ .||+.||..+.|..
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA-~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLA-AKL-DKNPNQVSERFQQL 60 (70)
Confidence 45677999999999999999985 5899999 566 79999999988754
No 58
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.66 E-value=0.07 Score=42.66 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhc----CCCCHHHHHHHHHHHHHHhhh
Q 022562 87 VPWTEEEHKLFLLGLQKVGKGDWRGISRNFV----KTRTPTQVASHAQKYFLRRSN 138 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V----~TRT~~QVrSHAQKYF~rl~~ 138 (295)
..||.||-..|++..++|+- +|--|+..|- ..||..+++.++-..-.++.+
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35999999999999999998 9999995554 379999999977544444443
No 59
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=94.03 E-value=0.083 Score=41.42 Aligned_cols=47 Identities=30% Similarity=0.362 Sum_probs=35.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCC---------------CChhhhhhhhc-----CCCCHHHHHHHHHH
Q 022562 84 KRGVPWTEEEHKLFLLGLQKVGK---------------GDWRGISRNFV-----KTRTPTQVASHAQK 131 (295)
Q Consensus 84 kk~~~WTeEEh~~FLegL~kyGk---------------GdWk~IAr~~V-----~TRT~~QVrSHAQK 131 (295)
+....|.++=+..|++||..|-. |+=..|+ .|+ .+||.+||.||-|-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs-~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIA-RYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHH-HHHHHHHSCCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHH-HHHHHHHcccCCccchhHHHHH
Confidence 45667999999999999999963 1222344 344 67999999999984
No 60
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.01 E-value=0.069 Score=51.69 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhh-----------hhcCCCCHHHHHHHHHHHHHHh
Q 022562 85 RGVPWTEEEHKLFLLGLQKVGK---GDWRGISR-----------NFVKTRTPTQVASHAQKYFLRR 136 (295)
Q Consensus 85 k~~~WTeEEh~~FLegL~kyGk---GdWk~IAr-----------~~V~TRT~~QVrSHAQKYF~rl 136 (295)
++..||+||++.+|-+|-+||. |.|..|-. -|+.+||+.++..|+. .++++
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~-tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN-TLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH-HHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH-HHHHH
Confidence 4557999999999999999999 99999932 2489999999999885 55444
No 61
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=81.51 E-value=2 Score=39.55 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=25.0
Q ss_pred ChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 022562 108 DWRGISRNFVKTRTPTQVASHAQKYFLRR 136 (295)
Q Consensus 108 dWk~IAr~~V~TRT~~QVrSHAQKYF~rl 136 (295)
.|+.|| .+.++||...+|.++.|+..+.
T Consensus 173 ~fk~ia-~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFA-EEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHH-HHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHH-HHCCCCChhhHHHHHHHHHhhc
Confidence 799999 7999999999999998887554
No 62
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=80.47 E-value=3.7 Score=37.92 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHhC--CCChhhhhh-hhcCCCCHHHHHHHH
Q 022562 87 VPWTEEEHKLFLLGLQKVG--KGDWRGISR-NFVKTRTPTQVASHA 129 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~kyG--kGdWk~IAr-~~V~TRT~~QVrSHA 129 (295)
+.||+-|-+.|+.+|.+|| .++|..|++ .-+..|+...++.-+
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~ 49 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETY 49 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 4599999999999999999 479999964 235568877666433
No 63
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.33 E-value=18 Score=28.74 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=22.9
Q ss_pred CChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 022562 107 GDWRGISRNFVKTRTPTQVASHAQKYFLRR 136 (295)
Q Consensus 107 GdWk~IAr~~V~TRT~~QVrSHAQKYF~rl 136 (295)
+.|+.|+ ..++--...+++.|+.||+...
T Consensus 71 ~~W~~Va-~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 71 QQWSMVA-QRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp TCHHHHH-HHHTSCCTTHHHHHHHHHHSHH
T ss_pred CcHHHHH-HHhCCChHHHHHHHHHHHHHHH
Confidence 5999999 5666555889999999996543
No 64
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.59 E-value=56 Score=26.12 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=23.7
Q ss_pred CChhhhhhhhcCCC-C---HHHHHHHHHHHHHHhhhccc
Q 022562 107 GDWRGISRNFVKTR-T---PTQVASHAQKYFLRRSNLNR 141 (295)
Q Consensus 107 GdWk~IAr~~V~TR-T---~~QVrSHAQKYF~rl~~~~k 141 (295)
+.|+.|++ .++-- + ..+++.|++||+.......+
T Consensus 64 k~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~ 101 (122)
T 2eqy_A 64 RKWTKIAT-KMGFAPGKAVGSHIRGHYERILNPYNLFLS 101 (122)
T ss_dssp TTHHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHHHHh
Confidence 59999994 55432 2 35889999999776665443
No 65
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=37.60 E-value=34 Score=27.18 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=22.2
Q ss_pred CChhhhhhhhcCCCC----HHHHHHHHHHHHHHhhhc
Q 022562 107 GDWRGISRNFVKTRT----PTQVASHAQKYFLRRSNL 139 (295)
Q Consensus 107 GdWk~IAr~~V~TRT----~~QVrSHAQKYF~rl~~~ 139 (295)
+.|+.|++ .++--. ..+++.|+.||+......
T Consensus 62 ~~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~ 97 (117)
T 2jrz_A 62 RRWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPYEMY 97 (117)
T ss_dssp TTHHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 58999994 554322 568899999986554443
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=35.09 E-value=72 Score=24.51 Aligned_cols=32 Identities=6% Similarity=0.198 Sum_probs=22.4
Q ss_pred CChhhhhhhhcCC-CC---HHHHHHHHHHHHHHhhhc
Q 022562 107 GDWRGISRNFVKT-RT---PTQVASHAQKYFLRRSNL 139 (295)
Q Consensus 107 GdWk~IAr~~V~T-RT---~~QVrSHAQKYF~rl~~~ 139 (295)
+.|+.|++ .++- .+ ..+++.|+.||+......
T Consensus 66 ~~W~~va~-~lg~~~~~~~~~~lk~~Y~k~L~~yE~~ 101 (107)
T 2lm1_A 66 RKWAKVAN-RMQYPSSKSVGATLKAHYERILHPFEVY 101 (107)
T ss_dssp TTHHHHHH-HTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 58999995 5543 32 468889999987655443
No 67
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=33.03 E-value=31 Score=27.91 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=24.5
Q ss_pred CChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022562 107 GDWRGISRNFVKTRTPTQVASHAQKYFLRRSN 138 (295)
Q Consensus 107 GdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~~ 138 (295)
+.|+.|+ ..++--...+++.++.||+.....
T Consensus 70 k~W~~Va-~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 70 QQWSMVA-QRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHH-HHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHCCChHHHHHHHHHHHHHHHHH
Confidence 5899999 566555589999999999766554
No 68
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=32.83 E-value=54 Score=26.24 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=22.4
Q ss_pred CChhhhhhhhcCCCC----HHHHHHHHHHHHHHhhhc
Q 022562 107 GDWRGISRNFVKTRT----PTQVASHAQKYFLRRSNL 139 (295)
Q Consensus 107 GdWk~IAr~~V~TRT----~~QVrSHAQKYF~rl~~~ 139 (295)
+.|+.|++ .++--+ ..+++.|+.||+......
T Consensus 73 ~~W~~Va~-~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 73 KKWRELAT-NLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp TCHHHHHH-HTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 59999994 554433 458889999987665543
No 69
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=31.97 E-value=25 Score=27.32 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=20.4
Q ss_pred CChhhhhhhhcC-----CCCHHHHHHHHHHHHHHh
Q 022562 107 GDWRGISRNFVK-----TRTPTQVASHAQKYFLRR 136 (295)
Q Consensus 107 GdWk~IAr~~V~-----TRT~~QVrSHAQKYF~rl 136 (295)
+.|+.|++ .++ |-...+++.|+.||+...
T Consensus 55 ~~W~~Va~-~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 55 RQWKHIYD-ELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp TTHHHHHH-HHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred CcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 59999995 444 223468999999986443
No 70
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=30.54 E-value=62 Score=25.91 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=23.7
Q ss_pred CChhhhhhhhcCC-C----CHHHHHHHHHHHHHHhhhccc
Q 022562 107 GDWRGISRNFVKT-R----TPTQVASHAQKYFLRRSNLNR 141 (295)
Q Consensus 107 GdWk~IAr~~V~T-R----T~~QVrSHAQKYF~rl~~~~k 141 (295)
+.|+.|++ .++- . ...+++.|+.||+.......+
T Consensus 74 k~W~~Va~-~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~ 112 (128)
T 1c20_A 74 KLWQEIIK-GLHLPSSITSAAFTLRTQYMKYLYPYECEKK 112 (128)
T ss_dssp TTHHHHHH-HTCCCSSCCSHHHHHHHHHHHHTHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 58999995 4442 2 257899999999766555443
No 71
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=27.26 E-value=33 Score=27.84 Aligned_cols=32 Identities=13% Similarity=0.418 Sum_probs=22.7
Q ss_pred CChhhhhhhhcC-CC----CHHHHHHHHHHHHHHhhhc
Q 022562 107 GDWRGISRNFVK-TR----TPTQVASHAQKYFLRRSNL 139 (295)
Q Consensus 107 GdWk~IAr~~V~-TR----T~~QVrSHAQKYF~rl~~~ 139 (295)
+.|+.|++ -++ .. ...+++.|+.||+......
T Consensus 64 k~W~~Va~-~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~ 100 (121)
T 2rq5_A 64 KKWNKLAD-MLRIPKTAQDRLAKLQEAYCQYLLSYDSL 100 (121)
T ss_dssp TCHHHHHH-HTCCCTTCSSHHHHHHHHHHTTHHHHHHC
T ss_pred CcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHhHHHHCc
Confidence 69999995 443 22 2468999999997665544
No 72
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=24.14 E-value=44 Score=26.40 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=38.3
Q ss_pred ccccccCCCCCCHHH-----------HHHHHHHHHHhCC----CChhh---hhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022562 79 ASRERKRGVPWTEEE-----------HKLFLLGLQKVGK----GDWRG---ISRNFVKTRTPTQVASHAQKYFLRRS 137 (295)
Q Consensus 79 ~~~~rkk~~~WTeEE-----------h~~FLegL~kyGk----GdWk~---IAr~~V~TRT~~QVrSHAQKYF~rl~ 137 (295)
...+..+++.||.|+ .+-++.-|+..|. -.|+. |. +...|+.-.|...-+.++|..-.
T Consensus 6 ~~~~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniK-NVaKtanK~qLiaAY~~lfE~~~ 81 (88)
T 2lc3_A 6 KEKENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNK-SIRKNRNCSQLIAAYKDFCEHGT 81 (88)
T ss_dssp HHHCSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHH-HHHHHSCHHHHHHHHHHHHHHTC
T ss_pred cccccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHH-HHHhcCcHHHHHHHHHHHHhccc
Confidence 345667889999999 4455666666663 12322 22 44568888899888877776543
No 73
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=24.06 E-value=82 Score=25.92 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=22.5
Q ss_pred CChhhhhhhhcCC-C----CHHHHHHHHHHHHHHhhhc
Q 022562 107 GDWRGISRNFVKT-R----TPTQVASHAQKYFLRRSNL 139 (295)
Q Consensus 107 GdWk~IAr~~V~T-R----T~~QVrSHAQKYF~rl~~~ 139 (295)
+.|+.|++ .++- . ...+++.++.||+......
T Consensus 86 ~~W~~Va~-~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 86 KLWREITK-GLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp TCHHHHHH-HTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred CcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 69999995 4432 2 2568999999996555544
No 74
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=23.29 E-value=42 Score=25.38 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=19.7
Q ss_pred CChhhhhhhhcCC-C---CHHHHHHHHHHHHHHh
Q 022562 107 GDWRGISRNFVKT-R---TPTQVASHAQKYFLRR 136 (295)
Q Consensus 107 GdWk~IAr~~V~T-R---T~~QVrSHAQKYF~rl 136 (295)
+.|+.|++ .++- . ...+++.|++||+...
T Consensus 58 ~~W~~v~~-~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 58 KKWSKVGS-RLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp TTHHHHHH-HHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHH-HhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 59999995 4432 2 2558888888886543
No 75
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=23.05 E-value=50 Score=27.04 Aligned_cols=26 Identities=35% Similarity=0.671 Sum_probs=21.3
Q ss_pred CCCCCHHHH-HHHHHHHHHhCCCChhh
Q 022562 86 GVPWTEEEH-KLFLLGLQKVGKGDWRG 111 (295)
Q Consensus 86 ~~~WTeEEh-~~FLegL~kyGkGdWk~ 111 (295)
...||+||- .++|+|++.-...+|+.
T Consensus 48 ~~~~TE~EF~~LLLEA~~~sSsS~W~~ 74 (125)
T 3o2i_A 48 SEYWTEDEFYNLLLEAFQRSSASDWHL 74 (125)
T ss_dssp SSCCCHHHHHHHHHHHHTTSCSCCHHH
T ss_pred cccccHHHHHHHHHHHHHhccCCcHHH
Confidence 456999996 67889999888889985
No 76
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=23.03 E-value=81 Score=25.87 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=23.6
Q ss_pred CChhhhhhhhcCCCCHHHHHHHHHHHHHHhhhcccccCCCcccccccCCCC
Q 022562 107 GDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVA 157 (295)
Q Consensus 107 GdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~~~~k~krR~Sl~dit~d~~~ 157 (295)
.||+.|+|..+...--.+-.+-+.+.-.-+.+.|..-. .++|.|...
T Consensus 38 ~DWkslar~~L~pgq~llW~se~~e~cr~qa~~N~~~~----~~it~d~Lt 84 (116)
T 4ard_A 38 TDWNTLVRAVLSGGDHLLWKSEFFENCRDTAKRNQQAG----NGWDFDMLT 84 (116)
T ss_pred HhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHhcc----CCccHHHHh
Confidence 59999998776443333333433222222223332211 267777655
No 77
>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C}
Probab=21.68 E-value=29 Score=32.70 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=24.7
Q ss_pred CCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhhcccccCCCcc
Q 022562 105 GKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSL 148 (295)
Q Consensus 105 GkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~~~~k~krR~Sl 148 (295)
|+|.||.+- -.||++||-..|...+..+|+.+-.+.
T Consensus 219 GkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~~~f 254 (312)
T 2gu0_A 219 GKRHWRLVL--------HSQLMSHAERLDRKIKSDKKHGRQFSY 254 (312)
T ss_dssp SSSEEEEEE--------GGGHHHHHHHHHHHHHCCC-------C
T ss_pred CCccEEEEe--------hHHhhhhHHHHHHHHhhhhhcCCCccc
Confidence 788898875 469999999999999887776543333
No 78
>4g0a_A Non-structural protein 2; RNA triphosphatase, RNA binding, hydrolase activity, nucleot binding, metal ION binding, HOST cell cytoplasm; 2.10A {Simian 11 rotavirus} PDB: 1l9v_A 2r7c_A* 2r7j_A 2r7p_A* 2r8f_A* 4g0j_A
Probab=21.52 E-value=32 Score=32.43 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHH---------HhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhhcccccCCCccc
Q 022562 87 VPWTEEEHKLFLLGLQ---------KVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLF 149 (295)
Q Consensus 87 ~~WTeEEh~~FLegL~---------kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~~~~k~krR~Sl~ 149 (295)
.+=.+.+.+.|..-|+ .+|+|.||.+- -.||+.||-..|...+..+|+.+-.+..
T Consensus 195 ~pi~d~~~kelvAelRwqyNkFAvItHGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~~~fn 258 (317)
T 4g0a_A 195 KPISDVHVKELVAELRWQYNKFAVITHGKGHYRIVK--------YSSVANHADRVYATFKSNVKTGVNNDFN 258 (317)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTEEEECCSSSSEEEEE--------GGGHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCchHHHHHHHHHHHHhhcceEEEecCCccEEEEe--------hHHhhhhHHHHHHHHhhhhccCCCcchh
Confidence 3455666666666554 23889998886 4699999999999988877765444433
No 79
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.09 E-value=1.7e+02 Score=19.99 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022562 89 WTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSN 138 (295)
Q Consensus 89 WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~rl~~ 138 (295)
+|+.|.+.|.. + ..|. ..+.|| ..++ -+...|+.|-.+-+.++..
T Consensus 17 L~~~e~~vl~l-~-~~g~-s~~eIA-~~l~-is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGL-PNKSIA-YDLD-ISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHH-H-TTTC-CHHHHH-HHTT-SCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHH-H-HcCC-CHHHHH-HHHC-cCHHHHHHHHHHHHHHHcC
Confidence 67777777766 4 4565 899999 5555 3777788777766666554
Done!