BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022563
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HXT|A Chain A, Structure Of Human Mthfs
pdb|3HY3|A Chain A, Structure Of Human Mthfs With 10-Formyltetrahydrofolate
pdb|3HY4|A Chain A, Structure Of Human Mthfs With N5-Iminium Phosphate
pdb|3HY6|A Chain A, Structure Of Human Mthfs With Adp
Length = 203
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 19/171 (11%)
Query: 68 AIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREV 127
A+ KRSLR ++++ L+ M +R ++ + V+ S ++ S+ I ++S E+
Sbjct: 5 AVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EI 62
Query: 128 DTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKD---LVANSMNILE 184
+T I+ +I Q K ++PR ++++M M++I + ++ L S NI +
Sbjct: 63 ETEEIIKDIF---------QRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQ 113
Query: 185 PSLLDSDGNQCEDVMQASEPVDLLILPGLAFDXXXXXXXXXXXYYDVFLKK 235
P +G+ E+ + ++ +DL+ +PGL FD YYD +LK+
Sbjct: 114 PG----EGDVREEAL-STGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKR 159
>pdb|1SOU|A Chain A, Nmr Structure Of Aquifex Aeolicus 5,10-
Methenyltetrahydrofolate Synthetase: Northeast
Structural Genomics Consortium Target Qr46
Length = 194
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 80/207 (38%), Gaps = 35/207 (16%)
Query: 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRI 132
K LR K+ N+ +R + V + FK S+ + Y C EVD + +
Sbjct: 3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALY--CPIKGEVDLTPL 60
Query: 133 VSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDG 192
E+L K+L +P+VE + + + ++ + L + I+EP
Sbjct: 61 FPEVLKE----------KELILPKVE--GNEISLYRVHSPACLGVGAFGIMEP------- 101
Query: 193 NQCEDVMQASEPVDLLILPGLAFDXXXXXXXXXXXYYDVFLKKYQKLAQEQKWKQPXXXX 252
E E VD + +PG+AFD YYD LK+ + L +
Sbjct: 102 --VEGERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLLKRVKGLKVGVAYSFQVF-- 157
Query: 253 XXXXXXXVDEESIPVTPYDVPVDALVS 279
E +P +D+PVD LV+
Sbjct: 158 ----------ERLPRDAWDIPVDVLVT 174
>pdb|1WKC|A Chain A, Crystal Structure Of A 5-Formyltetrahydrofolate
Cycloligase-Related Protein From Thermus Thermophilus
Hb8
Length = 184
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 27/129 (20%)
Query: 151 KLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLIL 210
+ Y+P+V K L + L +LEP+ D +DL+++
Sbjct: 64 RYYLPKVAGKG-----LTVHPFGPLAPGPFGLLEPTTPPEDPRV----------LDLVVV 108
Query: 211 PGLAFDXXXXXXXXXXXYYDVFLKKYQKLAQEQKWKQPXXXXXXXXXXXVDEESIPVTPY 270
PGLAFD +YD FLK+ + + ++P P+
Sbjct: 109 PGLAFDREGYRLGHGQGFYDRFLKEVRA------------ATVGVVPQALLFPALPRDPW 156
Query: 271 DVPVDALVS 279
DVPVD L +
Sbjct: 157 DVPVDHLAT 165
>pdb|2JCB|A Chain A, The Crystal Structure Of 5-Formyl-Tetrahydrofolate
Cycloligase From Bacillus Anthracis (Ba4489)
pdb|2JCB|B Chain B, The Crystal Structure Of 5-Formyl-Tetrahydrofolate
Cycloligase From Bacillus Anthracis (Ba4489)
Length = 200
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 40/217 (18%)
Query: 71 QKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVL----ESSWFKASRNICAYISCASLRE 126
++K LR +I +++M+ + + + T + IV + W +A I+ + E
Sbjct: 11 EEKLRLRKQI---IEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAK---TIGITLSMENE 64
Query: 127 VDTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEP- 185
V+T I+ + EG K++ VP+ + M +IS L MN+ EP
Sbjct: 65 VNTYPIIEKAWK----EG-----KRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPI 115
Query: 186 SLLDSDGNQCEDVMQASEPVDLLILPGLAFDXXXXXXXXXXXYYDVFLKKYQKLAQEQKW 245
L + N ++ +DL I+PG+A+ YYD +L Y+ +
Sbjct: 116 PALTEEVN--------ADEIDLQIVPGVAYTERGERIGYGGGYYDRYLVHYKGKTLSLAY 167
Query: 246 KQPXXXXXXXXXXXVDEESIPVTPYDVPVDALVSPRG 282
E IPV P+D V+ +++ +G
Sbjct: 168 SFQMV------------EHIPVEPFDKNVEKIITEKG 192
>pdb|1YDM|A Chain A, X-ray Structure Of Northeast Structural Genomics Target
Sr44
pdb|1YDM|B Chain B, X-ray Structure Of Northeast Structural Genomics Target
Sr44
pdb|1YDM|C Chain C, X-ray Structure Of Northeast Structural Genomics Target
Sr44
Length = 187
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 22/80 (27%)
Query: 205 VDLLILPGLAFDXXXXXXXXXXXYYDVFLKKYQK-----LAQEQKWKQPXXXXXXXXXXX 259
+DL I+PG+ FD YYD +L +Y+ L + Q +
Sbjct: 116 IDLXIVPGVCFDVNGFRVGFGGGYYDRYLSEYEGKTVSLLLECQLFAH------------ 163
Query: 260 VDEESIPVTPYDVPVDALVS 279
+P P+D+PV L++
Sbjct: 164 -----VPRLPHDIPVHKLIT 178
>pdb|2KC2|A Chain A, Nmr Structure Of The F1 Domain (Residues 86-202) Of The
Talin
Length = 128
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 86 NMDPIQRSQEDTAVQDIVLESSWFKASR--NICAYISCASLREVDTSRIVSEILSNQTDE 143
+M P++ D V+ I+++ S ICA I + D +V E++ + DE
Sbjct: 10 HMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN---HDEYSLVRELMEEKKDE 66
Query: 144 GNGQMRKKLYVPRVEDKNSNMR 165
G G +RK + R E K ++
Sbjct: 67 GTGTLRKDKTLLRDEKKMEKLK 88
>pdb|1UED|A Chain A, Crystal Structure Of Oxyc A Cytochrome P450 Implicated In
An Oxidative C-C Coupling Reaction During Vancomycin
Biosynthesis.
pdb|1UED|B Chain B, Crystal Structure Of Oxyc A Cytochrome P450 Implicated In
An Oxidative C-C Coupling Reaction During Vancomycin
Biosynthesis
Length = 406
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 62 DPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISC 121
+P Q+E +F+ + + ++ + P+Q A++D+V++ KA Y+ C
Sbjct: 264 NPGQIELLFESPEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAG----DYVLC 319
Query: 122 ASL 124
+ L
Sbjct: 320 SIL 322
>pdb|3TE6|A Chain A, Crystal Structure Of The S. Cerevisiae Sir3 Aaa+ Domain
pdb|3TE6|B Chain B, Crystal Structure Of The S. Cerevisiae Sir3 Aaa+ Domain
Length = 318
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 76 LRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASR-NICAYISCASL 124
+ S RK+L D I + A D + E WF S+ N+C IS +L
Sbjct: 70 ITSSARKELPIFDYIHIDALELAGXDALYEKIWFAISKENLCGDISLEAL 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,330,786
Number of Sequences: 62578
Number of extensions: 251199
Number of successful extensions: 593
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 16
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)