Query 022563
Match_columns 295
No_of_seqs 219 out of 1153
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:29:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02812 5-formyltetrahydrofol 100.0 9.6E-54 2.1E-58 383.5 21.4 206 68-284 2-211 (211)
2 PRK10333 5-formyltetrahydrofol 100.0 1E-51 2.2E-56 362.6 20.2 180 80-286 2-182 (182)
3 PF01812 5-FTHF_cyc-lig: 5-for 100.0 2.7E-51 5.9E-56 359.4 18.1 183 73-280 1-186 (186)
4 TIGR02727 MTHFS_bact 5,10-meth 100.0 6.4E-50 1.4E-54 350.3 19.8 180 73-280 1-181 (181)
5 KOG3093 5-formyltetrahydrofola 100.0 1.5E-49 3.2E-54 342.8 15.1 196 67-281 2-200 (200)
6 COG0212 5-formyltetrahydrofola 100.0 4.9E-47 1.1E-51 335.5 20.2 186 71-286 3-190 (191)
7 KOG4410 5-formyltetrahydrofola 99.7 5.7E-17 1.2E-21 148.9 11.9 189 67-287 28-239 (396)
8 TIGR02910 sulfite_red_A sulfit 51.5 1.6E+02 0.0034 28.7 10.2 131 128-282 9-162 (334)
9 PRK01175 phosphoribosylformylg 50.9 30 0.00066 32.2 5.1 63 203-267 47-110 (261)
10 KOG0967 ATP-dependent DNA liga 38.1 9.7 0.00021 39.8 -0.3 47 207-262 561-611 (714)
11 COG1332 CRISPR system related 36.6 13 0.00029 36.3 0.4 15 221-235 304-318 (369)
12 PRK01631 hypothetical protein; 29.0 31 0.00067 26.4 1.2 18 37-54 30-47 (76)
13 PRK02539 hypothetical protein; 27.1 32 0.0007 26.8 1.1 29 37-65 31-62 (85)
14 PF03263 Cucumo_2B: Cucumoviru 26.3 2E+02 0.0043 23.1 5.3 34 65-98 10-46 (103)
15 PF10001 DUF2242: Uncharacteri 24.3 39 0.00084 28.0 1.1 13 225-237 106-118 (121)
16 TIGR01899 cas_TM1807_csm5 CRIS 24.0 30 0.00066 33.9 0.5 15 220-234 299-313 (365)
17 COG5384 Mpp10 U3 small nucleol 22.0 1.1E+02 0.0023 30.8 3.7 36 69-104 498-535 (569)
18 PRK13146 hisH imidazole glycer 21.9 32 0.00069 30.6 0.1 53 203-262 40-92 (209)
19 PLN02530 histidine-tRNA ligase 21.2 44 0.00096 33.8 1.0 67 205-280 327-408 (487)
20 PRK01546 hypothetical protein; 20.0 54 0.0012 25.2 1.0 18 37-54 32-49 (79)
No 1
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=100.00 E-value=9.6e-54 Score=383.49 Aligned_cols=206 Identities=66% Similarity=1.073 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcC
Q 022563 68 AIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQ 147 (295)
Q Consensus 68 ~~~~~K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~ 147 (295)
.+.+.|++||++++++|++++++++...|.+|+++|++++.|+++++|++|+|+++.+||||.+|++.+++
T Consensus 2 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~--------- 72 (211)
T PLN02812 2 EIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLREVDTSKILSEILQ--------- 72 (211)
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECCCCCCcCHHHHHHHHHH---------
Confidence 35678999999999999999999999999999999999999999999999999982239999999999999
Q ss_pred CC-cEEEeeeEecCCCceEEEEcCCC-cccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccC
Q 022563 148 MR-KKLYVPRVEDKNSNMRMLKISAV-KDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRG 225 (295)
Q Consensus 148 ~G-k~V~vP~v~~~~~~m~f~~~~~~-~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~G 225 (295)
.| |+|+||++......|.|+.|.+. ++|..|.|||+||.........+.+.+.....+|||||||||||++|+|||||
T Consensus 73 ~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG~G 152 (211)
T PLN02812 73 NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRG 152 (211)
T ss_pred cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCcCC
Confidence 99 99999999765446999999986 78999999999997531111100011113467899999999999999999999
Q ss_pred CcchhHHHHHhhhhHhhhhccCceEEEEEcCccccc--CCCCCCCCCcccCCEEEeCCceE
Q 022563 226 GGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVD--EESIPVTPYDVPVDALVSPRGFI 284 (295)
Q Consensus 226 gGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd--~~~lP~e~hDiplD~IITe~gii 284 (295)
||||||||+.++......+++++.+|||||++|+++ + ||+|+||++||+||||+|++
T Consensus 153 gGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~~~~--iP~e~hD~~ld~iiTe~~vi 211 (211)
T PLN02812 153 GGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILDEGS--VPVDETDVLVDALVTPSGVI 211 (211)
T ss_pred CchHHHHHHHhhhhhccccCCCceEEEEeeheeeECCCC--CCCccccccCCEEEcCCcCC
Confidence 999999999885211001123466899999999999 8 99999999999999999974
No 2
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=100.00 E-value=1e-51 Score=362.59 Aligned_cols=180 Identities=28% Similarity=0.484 Sum_probs=160.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcCCCcEEEeeeEec
Q 022563 80 IRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKKLYVPRVED 159 (295)
Q Consensus 80 ~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~~Gk~V~vP~v~~ 159 (295)
++++|++|+++++...|++|+++|.+++.|+++++|++|+|++ +||||.+|++.+++ .||+|+||+|.+
T Consensus 2 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~gk~v~lP~v~~ 70 (182)
T PRK10333 2 IRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD--GELDTQPLIEQLWR---------AGKRVYLPVLHP 70 (182)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEEEEeEEec
Confidence 5788999999999999999999999999999999999999998 69999999999999 999999999975
Q ss_pred C-CCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchhHHHHHhhh
Q 022563 160 K-NSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQK 238 (295)
Q Consensus 160 ~-~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~GgGYYDRfL~~~~~ 238 (295)
. ...|.|+.+++.++|.+|+|||+||..... . ......+|+|||||||||++|+|||||||||||||+.++.
T Consensus 71 ~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~~------~-~~~~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~ 143 (182)
T PRK10333 71 FSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR------D-VLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQH 143 (182)
T ss_pred CCCCEEEEEECCCCCccccCCCCCCCCCcccc------c-cCCcccCCEEEeCceEECCCCCcccCCcchHHHHHHHhcc
Confidence 4 245999999998999999999999974210 0 1134678999999999999999999999999999998753
Q ss_pred hHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCCceEec
Q 022563 239 LAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPI 286 (295)
Q Consensus 239 ~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gii~~ 286 (295)
.++.+||+||++|++++ ||+|+||+|||.||||+|++.+
T Consensus 144 -------~~~~~igla~~~Q~~~~--ip~e~hD~~ld~iiTe~~~~~~ 182 (182)
T PRK10333 144 -------YKTQPVGYAHDCQLVEK--LPVEEWDIPLPAVVTPSKVWEW 182 (182)
T ss_pred -------cCCcEEEEeeeeEEeCC--cCCCcccCcCCEEEeCCeEEeC
Confidence 13458999999999999 9999999999999999999864
No 3
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=100.00 E-value=2.7e-51 Score=359.39 Aligned_cols=183 Identities=34% Similarity=0.651 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcCCCcEE
Q 022563 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKKL 152 (295)
Q Consensus 73 K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~~Gk~V 152 (295)
|++||++++++|++|+++++...|+.|+++|.+++.++++++|++|+|++ +|+||.+|++.+++ +||+|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Ev~t~~li~~~~~---------~gk~v 69 (186)
T PF01812_consen 1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEYRKAQTIALYLPMG--GEVDTRPLIERALK---------DGKRV 69 (186)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHHHCTSEEEE----T--TS---HHHHHHHHH---------TTCEE
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhhhceEEEccCCC--CCCCHHHHHHHHHH---------cCCeE
Confidence 89999999999999999999999999999999999999999999999998 69999999999999 99999
Q ss_pred EeeeEecCC---CceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcch
Q 022563 153 YVPRVEDKN---SNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYY 229 (295)
Q Consensus 153 ~vP~v~~~~---~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~GgGYY 229 (295)
++|++..+. ..|.|..+...++|.+|.|||+||..... .......+|+|||||||||++|+|||||||||
T Consensus 70 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~-------~~~~~~~idlvlVP~lafd~~G~RLG~GgGyY 142 (186)
T PF01812_consen 70 YLPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESP-------PPDPPEEIDLVLVPGLAFDRNGNRLGYGGGYY 142 (186)
T ss_dssp EEEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCS-------EEGGGGG-SEEEEE-SEEETTSBEE-SSSTHH
T ss_pred ecceecccccccceeEEeecCCcccccccccCccCCccccc-------cccccccCCEEEeCcEEECCCCCeEecCCCHH
Confidence 999998865 24677888888999999999999975320 11112378999999999999999999999999
Q ss_pred hHHHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeC
Q 022563 230 DVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSP 280 (295)
Q Consensus 230 DRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe 280 (295)
||||+.++. ....+.+|||||++|++++ ||+|+||++||+||||
T Consensus 143 DR~L~~~~~-----~~~~~~~igl~~~~q~~~~--iP~e~hD~~ld~iiTe 186 (186)
T PF01812_consen 143 DRFLARLPP-----GRKKPLKIGLAFDFQIVDD--IPVEPHDIPLDAIITE 186 (186)
T ss_dssp HHHHHHHTS------SS--EEEEEE-GGGEES-------TTS-B-SEEEET
T ss_pred HhHHHhhhc-----ccCCCeEEEEeehhheeCC--CCCCcccccCCEEEcC
Confidence 999999864 1245789999999999998 9999999999999998
No 4
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=100.00 E-value=6.4e-50 Score=350.31 Aligned_cols=180 Identities=34% Similarity=0.584 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcCCCcEE
Q 022563 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKKL 152 (295)
Q Consensus 73 K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~~Gk~V 152 (295)
|++||++++++|++++.+++...|..++++|.+++.|+++++|++|+|++ +|+||.+|++.+++ .||+|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~--~E~~t~~li~~~~~---------~~k~v 69 (181)
T TIGR02727 1 KKELRKKLLERRKALSSEERKAASEAIAKRLLALIEWKNAKTIALYLPLR--GEVDTRPLIEQLLK---------EGKRV 69 (181)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEE
Confidence 67999999999999999999999999999999999999999999999998 69999999999998 99999
Q ss_pred EeeeEecCC-CceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchhH
Q 022563 153 YVPRVEDKN-SNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDV 231 (295)
Q Consensus 153 ~vP~v~~~~-~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~GgGYYDR 231 (295)
+||++...+ ..|.|..|...++|..++|||+||.... . .. .....+|+|||||||||++|+|||||||||||
T Consensus 70 ~lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~--~----~~-~~~~~idlvivP~lafD~~G~RLG~GgGyYDR 142 (181)
T TIGR02727 70 ALPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDS--T----EP-VDPDEIDLIIVPGVAFDRRGYRLGYGGGYYDR 142 (181)
T ss_pred EEEEEecCCCceeEEEecCCCCccccCCCCCCCCCCcc--c----Cc-CCcccCCEEEeCceEEcCCCccccCCcchHHH
Confidence 999997653 2356667776668999999999997421 0 01 13567899999999999999999999999999
Q ss_pred HHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeC
Q 022563 232 FLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSP 280 (295)
Q Consensus 232 fL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe 280 (295)
||+.++. .+.+|||+|++|++++ +|+|+||++||+||||
T Consensus 143 ~L~~~~~--------~~~~igv~~~~q~~~~--lp~e~~Di~ld~iiTe 181 (181)
T TIGR02727 143 FLANLKG--------KTVVVGLAFDFQLVDE--LPREPHDVPVDAIITE 181 (181)
T ss_pred HHHhccc--------CCCEEEEEecceeeCc--cCCCccCccCCEEeCC
Confidence 9998742 2348999999999999 9999999999999997
No 5
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=342.78 Aligned_cols=196 Identities=39% Similarity=0.670 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCc
Q 022563 67 EAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNG 146 (295)
Q Consensus 67 ~~~~~~K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~ 146 (295)
+.+...|+.||++++..+++|+++.+.++|++|+++++++++|+++++|++|+||++ +||+|..||+.+++
T Consensus 2 ~~i~~~K~~LR~~lk~~L~ald~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~-~Ev~T~~Ii~~~fq-------- 72 (200)
T KOG3093|consen 2 DAISATKRLLRRQLKRSLGALDAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDK-GEVDTGEIIKEAFQ-------- 72 (200)
T ss_pred chHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCc-ccccHHHHHHHHHh--------
Confidence 457788999999999999999999999999999999999999999999999999996 69999999999999
Q ss_pred CCCcEEEeeeEecCCCceEEEEcCCCccc---ccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeec
Q 022563 147 QMRKKLYVPRVEDKNSNMRMLKISAVKDL---VANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLG 223 (295)
Q Consensus 147 ~~Gk~V~vP~v~~~~~~m~f~~~~~~~~L---~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG 223 (295)
+||.||+|++...+..|.++++...+++ ..+.|||++|.+. ..+++.......+|||||||||||+.|.|||
T Consensus 73 -~gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~----~~re~~~~t~~~lDLiivPGvAFd~~g~RlG 147 (200)
T KOG3093|consen 73 -DGKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPG----GPREDALETGHPLDLIIVPGVAFDRKGARLG 147 (200)
T ss_pred -cCCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCC----CchhhhccCCCcceEEEecccccchhhhhcc
Confidence 9999999999776677999999887554 4578999999863 3455555444579999999999999999999
Q ss_pred cCCcchhHHHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCC
Q 022563 224 RGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPR 281 (295)
Q Consensus 224 ~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~ 281 (295)
+|+||||+||.++.... .+.+|.+||||+.+|++.+ ||+++||+.||.||||+
T Consensus 148 hGkGYYD~flkry~~~~---~~~kp~~vgL~l~EQI~~~--IPv~~~Dv~lD~vvt~~ 200 (200)
T KOG3093|consen 148 HGKGYYDDFLKRYQIHA---PEQKPLLVGLCLKEQILSE--IPVEEHDVKLDAVVTED 200 (200)
T ss_pred CCcchHHHHHHHHHHhc---cccCchhhhhhhhHhhccc--CCCCccceeeeEeecCC
Confidence 99999999999998653 5678999999999999998 99999999999999985
No 6
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=100.00 E-value=4.9e-47 Score=335.47 Aligned_cols=186 Identities=31% Similarity=0.566 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcCCCc
Q 022563 71 QKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRK 150 (295)
Q Consensus 71 ~~K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~~Gk 150 (295)
+.|++||++++++|.+|++..+...+..+++++..+..+.++++|++|+|++ +|+||.++++.+|+ +||
T Consensus 3 ~~K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~--~E~~~~~l~~~~l~---------~gk 71 (191)
T COG0212 3 ATKSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPLIRQALR---------RGK 71 (191)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccC--CCCCcHHHHHHHHH---------cCC
Confidence 5799999999999999999999999999999999999999999999999998 69999999999999 999
Q ss_pred EEEeeeEecCCCceEEEEcCCC--cccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcc
Q 022563 151 KLYVPRVEDKNSNMRMLKISAV--KDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGY 228 (295)
Q Consensus 151 ~V~vP~v~~~~~~m~f~~~~~~--~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~GgGY 228 (295)
+|++|++.+ ..+.|..+.+. ..+..+.|||.||.... . .+ .+ ..+|+||||+||||++|+||||||||
T Consensus 72 ~l~lP~~~~--~~~~f~~~~~~~~~~~~~~~~gi~eP~~~~---~---~~-~~-~~iDlvlvP~Vafd~~G~RLG~GgGy 141 (191)
T COG0212 72 RLLLPKLRD--YKLLFLRYIPDPLQPLIKNRFGILEPGEYG---R---KI-PP-PEIDLVLVPLVAFDKQGYRLGYGGGY 141 (191)
T ss_pred EEEEeEEEc--CcceeEEecCCCCcccccccccccCCCccC---C---cc-CC-CcCCEEEeCceeECCCCccccCCCch
Confidence 999999986 34778888887 88999999999998532 1 11 12 67899999999999999999999999
Q ss_pred hhHHHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCCceEec
Q 022563 229 YDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPI 286 (295)
Q Consensus 229 YDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gii~~ 286 (295)
|||||+.+. +.++.+||++|++|+++. +|.|+||+|||.||||++++.+
T Consensus 142 YDR~la~~~-------~~~~~~ig~~~~~Q~v~~--lP~e~hDv~ld~ivt~~~~~~~ 190 (191)
T COG0212 142 YDRYLANLR-------GRKTPTVGIAYDCQLVDH--LPREPHDVPLDAIVTEEGVIRC 190 (191)
T ss_pred HHHHHHhhc-------cCCCCEEEEEEeeeeecc--CCCCcccCcccEEEeCCceEec
Confidence 999999885 135679999999999999 9999999999999999999876
No 7
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=99.71 E-value=5.7e-17 Score=148.86 Aligned_cols=189 Identities=21% Similarity=0.295 Sum_probs=137.9
Q ss_pred hHHHHHHHHHHHHHHHHHhc----CCHHHH------HHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHH
Q 022563 67 EAIFQKKRSLRSKIRKDLKN----MDPIQR------SQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEI 136 (295)
Q Consensus 67 ~~~~~~K~~LRk~~~~~R~~----ls~~~r------~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~ 136 (295)
.++...|..+|.+++....+ +++.-. ...+.++|+.+.++..|+.|+.|-+-.. -.+..+...+
T Consensus 28 qd~~~~k~~iR~q~W~~me~~n~a~~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVnpD------~pl~~~r~L~ 101 (396)
T KOG4410|consen 28 QDIEPTKRSIRVQTWKKMEEGNVAIGPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVNPD------RPLHEFRELA 101 (396)
T ss_pred CCcchhHHHHHHHHHHHHhhcccccCCcchhhcCccccchHHHHHHhhhhHHHhhcceeecCCC------chHHHHHHHH
Confidence 35778899999999987543 333211 1346677888889999999999986542 2356666666
Q ss_pred HhcCCcCCCcCCCcEEEeeeEecCCCceEEEEcCCCcc-----ccc--ccCCcc---CCCCCCCCCCccccccccCCCCc
Q 022563 137 LSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKD-----LVA--NSMNIL---EPSLLDSDGNQCEDVMQASEPVD 206 (295)
Q Consensus 137 l~~~~~~~~~~~Gk~V~vP~v~~~~~~m~f~~~~~~~~-----L~~--g~~GI~---EP~~~~~~g~~~~~~~~~~~~iD 206 (295)
|. ..|++++|...... -.|..++...+ +.. ..-|+. -+.. ++..-.+|
T Consensus 102 L~---------~~Ksll~PspRlrt--glf~kv~~~~~ate~i~~~c~tsqgv~ky~~~IG-----------LDs~lkvD 159 (396)
T KOG4410|consen 102 LL---------ADKSLLLPSPRLRT--GLFLKVDVLADATEEIKKECLTSQGVQKYRSEIG-----------LDSGLKVD 159 (396)
T ss_pred hh---------cccceecCCchhhc--ceeeeeccCCCCcHHHHHHHHhhhhHHHhCcccc-----------cccCceEE
Confidence 76 78999999876543 23555554311 111 111221 1222 11234689
Q ss_pred EEEEeceeEeCCCCeeccCCcchhHHHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCC---CCcccCCEEEeCCce
Q 022563 207 LLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVT---PYDVPVDALVSPRGF 283 (295)
Q Consensus 207 LvIVPgLAFD~~G~RLG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e---~hDiplD~IITe~gi 283 (295)
||+|..||+++.|+|||.|-||-|--...+..++ +..+.+++|.++||||+||+ ||.| .||+|||+|.||+++
T Consensus 160 lvViGSVavs~~G~RiGkGeGfAdLeygmli~mG--Ai~~~TpvVTiVHDcQvVD~--iP~el~~~hD~pVDiI~TPTrv 235 (396)
T KOG4410|consen 160 LVVIGSVAVSREGYRIGKGEGFADLEYGMLIEMG--AITPKTPVVTIVHDCQVVDS--IPPELFQKHDTPVDIIATPTRV 235 (396)
T ss_pred EEEEeeEEecccceeeccCCchhhhhhHHHHHhc--ccCCCCceEEEEecceeecc--CCHHHHhhcCCCccEEeccceE
Confidence 9999999999999999999999999999988765 33456788999999999999 9975 899999999999999
Q ss_pred EecC
Q 022563 284 IPIS 287 (295)
Q Consensus 284 i~~~ 287 (295)
|+..
T Consensus 236 I~t~ 239 (396)
T KOG4410|consen 236 IRTP 239 (396)
T ss_pred EecC
Confidence 9885
No 8
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=51.52 E-value=1.6e+02 Score=28.66 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=68.2
Q ss_pred CcHHHHHHHHhcCCcCCCcCCCcEEEeeeEec-CC-----CceEEEEcCCCcccccccCCccCCCCCCCCCCcccccc--
Q 022563 128 DTSRIVSEILSNQTDEGNGQMRKKLYVPRVED-KN-----SNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVM-- 199 (295)
Q Consensus 128 dt~~Li~~~l~~~~~~~~~~~Gk~V~vP~v~~-~~-----~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~g~~~~~~~-- 199 (295)
++..+++.+.+ + ++|+.|+... ++ ....|.++.+.+++.-+ +.-..|... ..-..++.++
T Consensus 9 ~l~~ll~~L~~---------~-y~v~aPv~~~~~g~~~~~~~i~f~~i~~~~el~~~-~~~~~spK~-~lfP~~E~L~~f 76 (334)
T TIGR02910 9 EFNLLLQKLNK---------D-YKVYAPKALFGKGTFSDTDNIRYQEISGVEEIEFH-EKSHFSPKE-IILPITETLFYF 76 (334)
T ss_pred HHHHHHHHHHh---------C-CEEEeeEEEcCCCcccCCCeEEEEEcCChhhcccC-CCCCCCchh-hccCCcceeEEE
Confidence 46677877654 4 9999999852 22 25678888877776644 221111100 0000001110
Q ss_pred -----c--cCCCCcEEEEeceeEeCCCCe----eccCCcchhHHHHHhhhhHhhhhccCceEEEEEcCc----ccccCCC
Q 022563 200 -----Q--ASEPVDLLILPGLAFDRSGGR----LGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSL----QLVDEES 264 (295)
Q Consensus 200 -----~--~~~~iDLvIVPgLAFD~~G~R----LG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~----Qivd~~~ 264 (295)
. ....-..||. .=+.|.++-. +=-++||.|-|....+. +...||+.=.. .+..+
T Consensus 77 ~~~~~~~~~~~~~~~vif-vRpCDl~ai~~lD~vfl~~~~~D~yY~~rRe--------~~~iV~~~C~~~~~tCFC~S-- 145 (334)
T TIGR02910 77 TEDTVQEAETDKKNIIIF-LRSCDINAVKRLDYIYLKNGNEDYYYKRLRE--------KVKFVLIECEESFENCFCVS-- 145 (334)
T ss_pred EcCcccccCCCCCcEEEE-EeccchhHHHHHHHHhcCCCCCCHHHHHHHh--------CcEEEEEeCCCCCCCeeEec--
Confidence 0 0111235555 7888988732 22278999999987654 34556554322 12222
Q ss_pred CCCCCCcccCCEEEeCCc
Q 022563 265 IPVTPYDVPVDALVSPRG 282 (295)
Q Consensus 265 lP~e~hDiplD~IITe~g 282 (295)
.-+.+.| -.|+.+|+.+
T Consensus 146 mGt~p~~-g~Dl~lt~~~ 162 (334)
T TIGR02910 146 MGTNKTD-CYSAAVRFSE 162 (334)
T ss_pred cCCCCCC-CccEEEEEeC
Confidence 3334444 5566666643
No 9
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=50.85 E-value=30 Score=32.20 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=35.7
Q ss_pred CCCcEEEEeceeEeCCCCeeccCCcchhHHHHHhhhhHhhhhccCceEEEEEcCccccc-CCCCCC
Q 022563 203 EPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVD-EESIPV 267 (295)
Q Consensus 203 ~~iDLvIVPgLAFD~~G~RLG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd-~~~lP~ 267 (295)
...|.|++|| +|+ .|..++.|..+-.++...+....++......+++|+|.-+|++- .+.||-
T Consensus 47 ~~~DgLvipG-Gfs-~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg 110 (261)
T PRK01175 47 SDYDCLVIPG-GFS-AGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG 110 (261)
T ss_pred hhCCEEEECC-CCC-cccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence 4679999999 453 23457777654334322111100011122346899999999874 456775
No 10
>KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair]
Probab=38.07 E-value=9.7 Score=39.84 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=34.9
Q ss_pred EEEEeceeEeCCCCeeccCCcc----hhHHHHHhhhhHhhhhccCceEEEEEcCcccccC
Q 022563 207 LLILPGLAFDRSGGRLGRGGGY----YDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDE 262 (295)
Q Consensus 207 LvIVPgLAFD~~G~RLG~GgGY----YDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~ 262 (295)
|=+||.=|+-.+|.|.|.+||| ||---..+... .+||-.|+.+.+.+
T Consensus 561 lDLv~iga~~G~GrrtG~yg~fLlacyn~dteefqsi---------CKigtGFsD~~l~e 611 (714)
T KOG0967|consen 561 LDLVVIGAYYGRGRRTGWYGGFLLACYNPDTEEFQSI---------CKIGTGFSDEFLQE 611 (714)
T ss_pred eeeeeeeeeeccccccccccceeEEeecCchHHHHHH---------HhhcCCCCHHHHHH
Confidence 6678888999999999999998 55544444332 36888888876654
No 11
>COG1332 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=36.61 E-value=13 Score=36.32 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.2
Q ss_pred eeccCCcchhHHHHH
Q 022563 221 RLGRGGGYYDVFLKK 235 (295)
Q Consensus 221 RLG~GgGYYDRfL~~ 235 (295)
+||+|||||-.++-.
T Consensus 304 ~lG~GgG~~skTi~~ 318 (369)
T COG1332 304 HLGFGGGWRSKTIGI 318 (369)
T ss_pred EEecccceeeeeeee
Confidence 799999999776543
No 12
>PRK01631 hypothetical protein; Provisional
Probab=28.99 E-value=31 Score=26.36 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=15.4
Q ss_pred CCCCchhhhhhcccccce
Q 022563 37 HLPTTPLSAVSSNVRTNI 54 (295)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~ 54 (295)
.|+.+||.+||.++++.|
T Consensus 30 ~LR~eYl~~fR~~~~~~L 47 (76)
T PRK01631 30 MLRQNYTQTFRGSLDSIL 47 (76)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578899999999999933
No 13
>PRK02539 hypothetical protein; Provisional
Probab=27.08 E-value=32 Score=26.79 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=20.6
Q ss_pred CCCCchhhhhhccccc---ceeecCCCCCccc
Q 022563 37 HLPTTPLSAVSSNVRT---NIVMNNNVVDPHQ 65 (295)
Q Consensus 37 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 65 (295)
.|+.+||.+|+.+++. ||.+-...|+...
T Consensus 31 ~LR~eYl~~fR~~~~~~L~~i~ivD~~G~dVT 62 (85)
T PRK02539 31 KLREEYIEGYRRSVRHHIEGIKIVDEEGNDVT 62 (85)
T ss_pred HHHHHHHHHHHHHHHHHhccceEECCCCCCCC
Confidence 5788999999999999 5555544443333
No 14
>PF03263 Cucumo_2B: Cucumovirus protein 2B; InterPro: IPR004946 This family of cucumovirus proteins may be long-distance movement proteins. ; PDB: 2ZI0_B 3CZ3_C.
Probab=26.26 E-value=2e+02 Score=23.09 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=22.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHH
Q 022563 65 QLEAIFQKKRSLRSKIRKDLKN---MDPIQRSQEDTA 98 (295)
Q Consensus 65 ~~~~~~~~K~~LRk~~~~~R~~---ls~~~r~~~s~~ 98 (295)
.+.-+.+.|++-|+.-++.|+. -||.++......
T Consensus 10 kLarm~Ekkk~rR~~Hk~NRkeRGhKSPSEr~Rs~lr 46 (103)
T PF03263_consen 10 KLARMVEKKKQRRRSHKKNRKERGHKSPSERARSELR 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHhcCCCCHHHHHHHHHH
Confidence 4556778888888888887765 577776655444
No 15
>PF10001 DUF2242: Uncharacterized protein conserved in bacteria (DUF2242); InterPro: IPR018718 This family includes putative lipoproteins and uncharacterised proteins.
Probab=24.27 E-value=39 Score=28.00 Aligned_cols=13 Identities=31% Similarity=0.805 Sum_probs=10.4
Q ss_pred CCcchhHHHHHhh
Q 022563 225 GGGYYDVFLKKYQ 237 (295)
Q Consensus 225 GgGYYDRfL~~~~ 237 (295)
-+.|||||+..+.
T Consensus 106 ~~~FY~rFF~lv~ 118 (121)
T PF10001_consen 106 DGDFYDRFFQLVE 118 (121)
T ss_pred chhHHHHHHHHHH
Confidence 4689999998654
No 16
>TIGR01899 cas_TM1807_csm5 CRISPR-associated RAMP protein, Csm5 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.
Probab=24.00 E-value=30 Score=33.89 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.2
Q ss_pred CeeccCCcchhHHHH
Q 022563 220 GRLGRGGGYYDVFLK 234 (295)
Q Consensus 220 ~RLG~GgGYYDRfL~ 234 (295)
-|||+|+||+=.++.
T Consensus 299 ~~iG~g~G~~s~t~~ 313 (365)
T TIGR01899 299 LHIGWGGGLRSKTIG 313 (365)
T ss_pred EEeecccceeeeeeE
Confidence 599999999866653
No 17
>COG5384 Mpp10 U3 small nucleolar ribonucleoprotein component [Translation, ribosomal structure and biogenesis]
Probab=21.97 E-value=1.1e+02 Score=30.79 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHh
Q 022563 69 IFQKKRSLRSKIRKDLKN--MDPIQRSQEDTAVQDIVL 104 (295)
Q Consensus 69 ~~~~K~~LRk~~~~~R~~--ls~~~r~~~s~~i~~~L~ 104 (295)
-.+.|+.+|+.+++.|.. +...++...-..+...|.
T Consensus 498 ~~e~K~~~RR~~kRK~s~~~~~~~~KRS~~~~VV~~LS 535 (569)
T COG5384 498 TREDKNRLRRALKRKRSKANLPNVNKRSKRNDVVDTLS 535 (569)
T ss_pred hHHHHHHHHHHHHHhhhhhcccchhhccchhHHHHHHh
Confidence 567799999999887743 444444444455555554
No 18
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.88 E-value=32 Score=30.63 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=29.4
Q ss_pred CCCcEEEEeceeEeCCCCeeccCCcchhHHHHHhhhhHhhhhccCceEEEEEcCcccccC
Q 022563 203 EPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDE 262 (295)
Q Consensus 203 ~~iDLvIVPgLAFD~~G~RLG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~ 262 (295)
...|.||+||........+.=.--|+.++.+.... ....+++|+|+-.|++.+
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~PvlGiC~G~q~l~~ 92 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVL-------AAGRPFLGICVGMQLLFE 92 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHH-------hCCCcEEEECHHHHHHhh
Confidence 46799999996533221111111134444444321 123467999999998865
No 19
>PLN02530 histidine-tRNA ligase
Probab=21.21 E-value=44 Score=33.75 Aligned_cols=67 Identities=28% Similarity=0.459 Sum_probs=40.5
Q ss_pred CcEEEEecee---------EeCCC-CeeccCCcchhHHHHHhhhhHhhhhccCceEEEEEcCcccc----c-CCCCCCCC
Q 022563 205 VDLLILPGLA---------FDRSG-GRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLV----D-EESIPVTP 269 (295)
Q Consensus 205 iDLvIVPgLA---------FD~~G-~RLG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qiv----d-~~~lP~e~ 269 (295)
+|+-+|.|+. |+..| .+-=-|||=||+.+..+.. ...+.||+++...++ + .+.+| .
T Consensus 327 ~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg-------~~~pAvGFa~g~~~l~~~l~~~g~~p--~ 397 (487)
T PLN02530 327 FDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGG-------EDTPACGFGFGDAVIVELLKEKGLLP--E 397 (487)
T ss_pred EecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCC-------CCCCeeEEEEhHHHHHHHHHhcCCCC--C
Confidence 5777777775 44333 2333489999999998742 234578888874332 1 11133 3
Q ss_pred CcccCCEEEeC
Q 022563 270 YDVPVDALVSP 280 (295)
Q Consensus 270 hDiplD~IITe 280 (295)
|..+.|++|..
T Consensus 398 ~~~~~dVlVi~ 408 (487)
T PLN02530 398 LPHQVDDVVFA 408 (487)
T ss_pred CCCCCcEEEEE
Confidence 66677877654
No 20
>PRK01546 hypothetical protein; Provisional
Probab=20.02 E-value=54 Score=25.24 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.6
Q ss_pred CCCCchhhhhhcccccce
Q 022563 37 HLPTTPLSAVSSNVRTNI 54 (295)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~ 54 (295)
.|+.+||.+||.+++..|
T Consensus 32 ~LR~eYl~~fR~~~~~~L 49 (79)
T PRK01546 32 SLREQYLKGFRQNMLNEL 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578899999999999944
Done!