Query 022563
Match_columns 295
No_of_seqs 219 out of 1153
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:30:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hy3_A 5-formyltetrahydrofolat 100.0 1.4E-55 4.8E-60 391.6 21.5 196 66-283 3-201 (203)
2 1ydm_A Hypothetical protein YQ 100.0 1.1E-54 3.7E-59 381.4 14.7 186 72-287 1-186 (187)
3 2jcb_A 5-formyltetrahydrofolat 100.0 2.3E-54 7.9E-59 383.4 16.8 187 68-284 8-194 (200)
4 1sou_A 5,10-methenyltetrahydro 100.0 4.8E-53 1.7E-57 373.2 17.8 183 73-290 3-185 (194)
5 1wkc_A HB8 TT1367 protein; str 100.0 9.8E-51 3.3E-55 355.8 16.9 176 73-292 3-179 (184)
6 1sbq_A H91_ORF164, 5,10-methen 100.0 1.1E-46 3.8E-51 331.5 15.5 161 72-281 27-189 (189)
7 3cdk_A Succinyl-COA:3-ketoacid 47.5 34 0.0012 30.0 6.2 66 203-280 150-219 (241)
8 3rrl_A Succinyl-COA:3-ketoacid 34.8 68 0.0023 28.1 6.0 68 202-281 149-220 (235)
9 1k6d_A Acetate COA-transferase 32.6 48 0.0016 28.5 4.6 34 203-236 147-181 (220)
10 2hep_A UPF0291 protein YNZC; S 25.6 8 0.00027 29.1 -1.5 18 37-54 32-49 (85)
No 1
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=100.00 E-value=1.4e-55 Score=391.58 Aligned_cols=196 Identities=30% Similarity=0.539 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCC
Q 022563 66 LEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGN 145 (295)
Q Consensus 66 ~~~~~~~K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~ 145 (295)
|+++...|++||++++++|++|+++++..+|.+|+++|++++.|+++++|++|+|++ +||||.+|++.+++
T Consensus 3 ~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~------- 73 (203)
T 3hy3_A 3 AAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DEIETEEIIKDIFQ------- 73 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTCHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH-------
Confidence 667889999999999999999999999999999999999999999999999999998 59999999999999
Q ss_pred cCCCcEEEeeeEecCCCceEEEEcCCCc---ccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCee
Q 022563 146 GQMRKKLYVPRVEDKNSNMRMLKISAVK---DLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRL 222 (295)
Q Consensus 146 ~~~Gk~V~vP~v~~~~~~m~f~~~~~~~---~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RL 222 (295)
.||+|+||++...+..|.|+.|.+.+ .|.+|.|||+||.... ...+.+ ....+|||||||||||++|+||
T Consensus 74 --~gk~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~----~~~~~~-~~~~~DlvlVP~vaFD~~G~RL 146 (203)
T 3hy3_A 74 --RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGD----VREEAL-STGGLDLIFMPGLGFDKHGNRL 146 (203)
T ss_dssp --TTCEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTC----CCCBGG-GTTCCSEEEECCSEECTTCCEE
T ss_pred --CCCEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCcc----cccccc-CccCCCEEEeCCeEECCCCcee
Confidence 99999999997655579999998864 5789999999997421 011111 3457999999999999999999
Q ss_pred ccCCcchhHHHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCCce
Q 022563 223 GRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGF 283 (295)
Q Consensus 223 G~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gi 283 (295)
|||||||||||+.++.. .+.++.+|||+|++|++++ ||+|+||++||+||||+|+
T Consensus 147 G~GgGyYDR~L~~~~~~----~~~~~~~igla~~~Q~~~~--lP~e~hDi~ld~iiTe~~~ 201 (203)
T 3hy3_A 147 GRGKGYYDAYLKRCLQH----QEVKPYTLALAFKEQICLQ--VPVNENDMKVDEVLYEDSS 201 (203)
T ss_dssp CSSSCHHHHHHHHHTTT----CSSCCEEEEECCGGGBCSC--CCCC--CCCCSEEECC---
T ss_pred cCCCchHHHHHHHhhhh----cCCCCeEEEEecHHhccCC--CCCCcccccCCEEEeCCCc
Confidence 99999999999987531 1345778999999999999 9999999999999999986
No 2
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-54 Score=381.36 Aligned_cols=186 Identities=26% Similarity=0.435 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcCCCcE
Q 022563 72 KKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKK 151 (295)
Q Consensus 72 ~K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~~Gk~ 151 (295)
.|++||++++++|++|+++++..+|.+|+++|++++.|+++++|++|+|++ +|+||.+|++.+|+ +||+
T Consensus 1 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~gk~ 69 (187)
T 1ydm_A 1 MKSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPVIEQAWE---------EGKQ 69 (187)
T ss_dssp ---CHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHTCSEEECCCCCT--TSCCCHHHHHHHHH---------TTCE
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHHhhhCCEEEEECCCC--CCCCHHHHHHHHHH---------CCCE
Confidence 388999999999999999999999999999999999999999999999998 69999999999999 9999
Q ss_pred EEeeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchhH
Q 022563 152 LYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDV 231 (295)
Q Consensus 152 V~vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~GgGYYDR 231 (295)
|+||++...+..|.|+.|++.++|.+|.|||+||.... ... .+...+|||||||||||++|+|||||||||||
T Consensus 70 v~lP~~~~~~~~m~f~~~~~~~~L~~~~~gi~EP~~~~------~~~-~~~~~iDlvivP~vafD~~G~RLG~GgGyYDR 142 (187)
T 1ydm_A 70 VCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEK------TKE-VNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDR 142 (187)
T ss_dssp EEEECC---CCCCCEEECCCCTTHHHHHTTSCCCC--C------CCC-CCGGGCCEEECCCSEEETTSCEECCSCCSTTT
T ss_pred EEEeEEecCCCcEEEEEeCCCCccCcCCCCCCCCCCcc------ccc-CCccCCCEEEeCCeEECCCCCcccCCccHHHH
Confidence 99999864344699999999899999999999997421 001 12357899999999999999999999999999
Q ss_pred HHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCCceEecC
Q 022563 232 FLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPIS 287 (295)
Q Consensus 232 fL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gii~~~ 287 (295)
||+.++ ..+||++|++|++++ ||+|+||++||+||||+++++|.
T Consensus 143 ~L~~~~----------~~~igla~~~Q~~~~--lP~e~hD~~ld~iiTe~~~~~~~ 186 (187)
T 1ydm_A 143 YLSEYE----------GKTVSLLLECQLFAH--VPRLPHDIPVHKLITEDRIISCF 186 (187)
T ss_dssp GGGTCC----------SEEEEECCGGGEESC--CCCCTTCCCCSEEECSSCEEECC
T ss_pred HHHhCC----------CCEEEEEeHHHhcCC--CCCccccCcCCEEEECCcEEecc
Confidence 998763 257999999999998 99999999999999999999885
No 3
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Probab=100.00 E-value=2.3e-54 Score=383.44 Aligned_cols=187 Identities=27% Similarity=0.496 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcC
Q 022563 68 AIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQ 147 (295)
Q Consensus 68 ~~~~~K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~ 147 (295)
-+.+.|++||++++++|++|+++++..+|.+|+++|++++.|+++++|++|+|++ +|+||.+|++.+|+
T Consensus 8 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~--------- 76 (200)
T 2jcb_A 8 HVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME--NEVNTYPIIEKAWK--------- 76 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTSHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------
Confidence 4678999999999999999999999999999999999999999999999999998 69999999999999
Q ss_pred CCcEEEeeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCc
Q 022563 148 MRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGG 227 (295)
Q Consensus 148 ~Gk~V~vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~GgG 227 (295)
+||+|+||++...+..|.|+.|++.++|.+|.|||+||.... ... .+...+|||||||||||++|+|||||||
T Consensus 77 ~gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~------~~~-~~~~~iDlvlVP~vAfD~~G~RLG~GgG 149 (200)
T 2jcb_A 77 EGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPAL------TEE-VNADEIDLQIVPGVAYTERGERIGYGGG 149 (200)
T ss_dssp TTCEEEEEEEETTTTEEEEEEESSGGGEEEEETTEEEECGGG------CEE-CCGGGCSEEECCCSEECTTSCEECSSSC
T ss_pred CCCEEEEeEEEcCCCcEEEEEeCCCcccccCCCCCCCCCCcc------ccc-CCccCCCEEEECCeEECCCCCeeccCCc
Confidence 999999999976555799999999999999999999997421 001 1345789999999999999999999999
Q ss_pred chhHHHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCCceE
Q 022563 228 YYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFI 284 (295)
Q Consensus 228 YYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gii 284 (295)
||||||+.++ ..+||++|++|++++ ||+|+||+|||+||||++++
T Consensus 150 yYDR~La~~~----------~~~igla~~~Q~v~~--lP~e~hDi~ld~iiTe~~~~ 194 (200)
T 2jcb_A 150 YYDRYLVHYK----------GKTLSLAYSFQMVEH--IPVEPFDKNVEKIITEKGTM 194 (200)
T ss_dssp HHHHHTTTCC----------SEEEEECCGGGBCSC--CCCCTTCCCCSEEEETTEEE
T ss_pred hHHHHHhhcC----------CCEEEEEehhhccCC--CCCCccCCcCCEEEECCeEE
Confidence 9999998763 257999999999998 99999999999999999998
No 4
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=100.00 E-value=4.8e-53 Score=373.18 Aligned_cols=183 Identities=30% Similarity=0.507 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcCCCcEE
Q 022563 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKKL 152 (295)
Q Consensus 73 K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~~Gk~V 152 (295)
|++||++++++|++++++++..+|.+|+++|++++.|+++++|++|+|++ +|+||.+|++.+|+ + |+|
T Consensus 3 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~-k~v 70 (194)
T 1sou_A 3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK---------E-KEL 70 (194)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH---------H-SEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------c-CCE
Confidence 89999999999999999999999999999999999999999999999998 69999999999999 8 999
Q ss_pred EeeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchhHH
Q 022563 153 YVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVF 232 (295)
Q Consensus 153 ~vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~GgGYYDRf 232 (295)
+||++ . +..|.|+.|++.++|.+|.|||+||... .. .....+|||||||||||++|+||||||||||||
T Consensus 71 ~lP~~-~-~~~m~f~~~~~~~~L~~g~~GI~EP~~~--------~~-~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~ 139 (194)
T 1sou_A 71 ILPKV-E-GNEISLYRVHSPACLGVGAFGIMEPVEG--------ER-VNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRL 139 (194)
T ss_dssp EEEEE-S-SSSEEEEEESSSCCCEECSSSCEECCSS--------EE-ECGGGCSEEEECCSCBCSSSCBCCSCCSSHHHH
T ss_pred EEEEe-c-CCeeEEEEECCCCccCCCCCCCCCCCcc--------cc-CCCCCCCEEEECCeEECCCCceeccCCcHHHHH
Confidence 99998 3 3469999999999999999999999631 01 123578999999999999999999999999999
Q ss_pred HHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCCceEecCCCc
Q 022563 233 LKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPVA 290 (295)
Q Consensus 233 L~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gii~~~~~~ 290 (295)
|+.++ +.+||++|++|++++ ||+|+||+|||+||||++++++....
T Consensus 140 L~~~~----------~~~igla~~~Q~v~~--lP~e~hDi~ld~iiTe~~~~~~~~~~ 185 (194)
T 1sou_A 140 LKRVK----------GLKVGVAYSFQVFER--LPRDAWDIPVDVLVTEKNVRRLRDGR 185 (194)
T ss_dssp HHHCC----------SEEEEECCGGGBCSC--CCCCSCCCCCSEEECSSCEEESCCCC
T ss_pred HHhcC----------CCEEEEEchHhccCC--CCCCcccccCCEEEECCeEEEecCCC
Confidence 99763 257999999999998 99999999999999999999997554
No 5
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6
Probab=100.00 E-value=9.8e-51 Score=355.79 Aligned_cols=176 Identities=29% Similarity=0.480 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcCCCcEE
Q 022563 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKKL 152 (295)
Q Consensus 73 K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~~Gk~V 152 (295)
|++||++++++|+++++++ +|.+|+++|++++.|+++++|++|+|++ +|+||.+|++ |+ + |+|
T Consensus 3 K~~lR~~~~~~r~~l~~~~---~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~--~~---------~-k~v 65 (184)
T 1wkc_A 3 KAELRRRARAAWRRLDLKA---LSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLME--AY---------P-ARY 65 (184)
T ss_dssp HHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHH--HS---------C-CEE
T ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhChhhhcCCEEEEECCCC--CCcCHHHHHH--hh---------c-CCE
Confidence 8999999999999999987 7889999999999999999999999998 6999999999 77 8 999
Q ss_pred EeeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchhHH
Q 022563 153 YVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVF 232 (295)
Q Consensus 153 ~vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~GgGYYDRf 232 (295)
+||++.++ .|.|+.|+ +|.+|.|||+|| ... . .....+|||||||||||++|+||||||||||||
T Consensus 66 ~lP~~~~~--~m~f~~~~---~L~~~~~gi~EP-~~~--------~-~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~ 130 (184)
T 1wkc_A 66 YLPKVAGK--GLTVHPFG---PLAPGPFGLLEP-TTP--------P-EDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRF 130 (184)
T ss_dssp EEEEEETT--EEEEEESC---CBC-------CB-CSC--------C-BCGGGCSEEEECCSEEETTSCEECCSSCHHHHH
T ss_pred EEeEEeCC--ceEEEEec---ccCCCCCCCCCC-CCc--------c-CCCCCCCEEEECcEEECCCCCEeeCCccHHHHH
Confidence 99998644 69999997 899999999999 321 0 123578999999999999999999999999999
Q ss_pred HHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCCceEecCCC-ccc
Q 022563 233 LKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPV-AIE 292 (295)
Q Consensus 233 L~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gii~~~~~-~~~ 292 (295)
|+.++ +.+||++|++|++++ ||+|+||++||+||||+++++++.. .+|
T Consensus 131 L~~~~----------~~~igl~~~~Q~~~~--lp~e~hD~~ld~iiT~~~~~~~~~~~~~p 179 (184)
T 1wkc_A 131 LKEVR----------AATVGVVPQALLFPA--LPRDPWDVPVDHLATEAGVEAVKRPAPGP 179 (184)
T ss_dssp HHHCC----------SEEEEECCGGGEESC--CCCCTTCCCCSEEEETTEEEECCCC----
T ss_pred HHhcC----------CCEEEEEchhhccCC--CCCccccCccCEEEECCEEEEcCCCCCCC
Confidence 99763 357999999999998 9999999999999999999999765 444
No 6
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Probab=100.00 E-value=1.1e-46 Score=331.48 Aligned_cols=161 Identities=23% Similarity=0.410 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcccc-CCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcCCCc
Q 022563 72 KKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFK-ASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRK 150 (295)
Q Consensus 72 ~K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~-~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~~Gk 150 (295)
.|++||++++++|++++++++..+|.+|+++|++++.|+ ++++|++|+|++ +|+||.+|++.+|+ +||
T Consensus 27 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~gk 95 (189)
T 1sbq_A 27 DKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK---------INQ 95 (189)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH---------HTT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHhHhhCCEEEEECCCC--CCCCHHHHHHHHHH---------cCC
Confidence 499999999999999999999999999999999999999 999999999998 69999999999999 999
Q ss_pred -EEEeeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcch
Q 022563 151 -KLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYY 229 (295)
Q Consensus 151 -~V~vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~GgGYY 229 (295)
+|+||++..+ ..|.|+.|++. |. ....+|||||||||||++|+|||||||||
T Consensus 96 ~~v~lP~~~~~-~~m~f~~~~~~------------~~--------------~~~~iDlvlVP~vAfD~~G~RLG~GgGyY 148 (189)
T 1sbq_A 96 IRAVYPKVISD-TEIIFIDQETN------------TF--------------EPNQIDCFLIPLVGFNKDNYRLGFGKGYY 148 (189)
T ss_dssp CEEEEEEECSS-SCEEEECTTCC------------EE--------------CGGGCCEEEEECSEECTTCCEECCSSCHH
T ss_pred CeEEEeEEccC-CceEEEEeCCC------------CC--------------CcccCCEEEECceEECCCCCEeecCCchH
Confidence 9999999643 45999998754 21 12357999999999999999999999999
Q ss_pred hHHHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCC
Q 022563 230 DVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPR 281 (295)
Q Consensus 230 DRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~ 281 (295)
||||+.++. ++.+|||+|++|+++ ||+|+||+|||+||||+
T Consensus 149 DR~La~~~~--------~~~~igla~~~Q~v~---lP~e~hDiplD~IiTe~ 189 (189)
T 1sbq_A 149 DRYLMQLTR--------QQPKIGIAYSFQKGD---FLADPWDVQLDLIINDE 189 (189)
T ss_dssp HHHGGGCCS--------CCCEEEEECGGGBCC---CCCCTTSCCCSEEEECC
T ss_pred HHHHHhcCC--------CCCEEEEechHheeC---CCCCcccCcCCEEEcCC
Confidence 999997632 356899999999987 99999999999999995
No 7
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=47.47 E-value=34 Score=29.96 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=43.8
Q ss_pred CCCcEEEEeceeEeCCCC-eeccCCcchhHHHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCccc---CCEEE
Q 022563 203 EPVDLLILPGLAFDRSGG-RLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVP---VDALV 278 (295)
Q Consensus 203 ~~iDLvIVPgLAFD~~G~-RLG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDip---lD~II 278 (295)
-.+|+.||=+-.-|++|| .+|...++||..++..-+ .+|.-+ .++++.+.++.+.-.+| ||+||
T Consensus 150 l~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~a~aAk----------~VIveV--n~~vp~g~l~p~~v~ipg~~VD~VV 217 (241)
T 3cdk_A 150 ITGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGK----------ITIAEA--EEIVEAGELDPDHIHTPGIYVQHVV 217 (241)
T ss_dssp CCEEEEEEEEEEEETTCCEECCGGGCTTHHHHHHHEE----------EEEEEE--EEEECTTSSCTTTCSBCGGGCSEEE
T ss_pred CCCcEEEEEeccCCCCCeEEEecCchhhHHHHHHhCC----------EEEEEE--eCCCCccccCCceEEeChHHeEEEE
Confidence 468999999999999998 777788899976664321 233322 33444333554555564 89988
Q ss_pred eC
Q 022563 279 SP 280 (295)
Q Consensus 279 Te 280 (295)
-.
T Consensus 218 ~~ 219 (241)
T 3cdk_A 218 LG 219 (241)
T ss_dssp EC
T ss_pred Ec
Confidence 63
No 8
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=34.83 E-value=68 Score=28.06 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=45.1
Q ss_pred CCCCcEEEEeceeEeCCCCee-ccCCcchhHHHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCccc---CCEE
Q 022563 202 SEPVDLLILPGLAFDRSGGRL-GRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVP---VDAL 277 (295)
Q Consensus 202 ~~~iDLvIVPgLAFD~~G~RL-G~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDip---lD~I 277 (295)
...+|+.||-+-.-|++||=. +...++|+..++..-+ .+| +=-.++++.+.++.+.-.+| ||+|
T Consensus 149 a~~~DvAli~a~~aD~~GN~~~~~~~~~~~~~~a~aA~----------~vI--veve~iv~~g~l~p~~v~ipg~~VD~V 216 (235)
T 3rrl_A 149 AITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAAK----------ICV--AEVEEIVPAGELDPDEIHLPGIYVQHI 216 (235)
T ss_dssp CCCEEEEEEECSEEETTCCEECCGGGCTTHHHHHHTEE----------EEE--EEESEEECTTSSCTTTCSBCGGGCSEE
T ss_pred CCCCeEEEEEeeecCCCceEEEecCcccccHHHHHhcC----------EEE--EEEeeccccCccCCceEEeChHHeEEE
Confidence 457899999999999999754 4445688987765311 223 33344555444665666677 9999
Q ss_pred EeCC
Q 022563 278 VSPR 281 (295)
Q Consensus 278 ITe~ 281 (295)
|--+
T Consensus 217 V~~~ 220 (235)
T 3rrl_A 217 YKGE 220 (235)
T ss_dssp EECS
T ss_pred EECC
Confidence 8643
No 9
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=32.58 E-value=48 Score=28.48 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=29.0
Q ss_pred CCCcEEEEeceeEeCCCC-eeccCCcchhHHHHHh
Q 022563 203 EPVDLLILPGLAFDRSGG-RLGRGGGYYDVFLKKY 236 (295)
Q Consensus 203 ~~iDLvIVPgLAFD~~G~-RLG~GgGYYDRfL~~~ 236 (295)
-.+|+.||=+-.-|++|| .+|...++||..++..
T Consensus 147 l~~DVAli~a~~aD~~Gn~~~~~~~~~~~~~~a~a 181 (220)
T 1k6d_A 147 LRADLALIRAHRCDTLGNLTYQLSARNFNPLIALA 181 (220)
T ss_dssp CCEEEEEEEEEEEETTCCEECCHHHHTTHHHHHHH
T ss_pred CCCcEEEEEeecCCCCceEEEecCCccccHHHHHh
Confidence 468999999999999998 7777789999997653
No 10
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=25.57 E-value=8 Score=29.07 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=9.9
Q ss_pred CCCCchhhhhhcccccce
Q 022563 37 HLPTTPLSAVSSNVRTNI 54 (295)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~ 54 (295)
.|+.+||.+|+++++..|
T Consensus 32 ~LR~eYl~~fR~~~r~~L 49 (85)
T 2hep_A 32 KLRQEYLKGFRSSMKNTL 49 (85)
T ss_dssp HHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578899999999999944
Done!