RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022564
(295 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 322 bits (825), Expect = e-109
Identities = 167/267 (62%), Positives = 209/267 (78%), Gaps = 1/267 (0%)
Query: 18 TWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEG 77
+ + L PL+ D E+ DII+ E RQ GLELI SENF S +V++A+GS + NKYS G
Sbjct: 3 SHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLG 62
Query: 78 YPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137
YPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGSP+NF VYTAL++PH
Sbjct: 63 YPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHG 122
Query: 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 197
RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYIDYD+LE++A LF PK
Sbjct: 123 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPK 182
Query: 198 LIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH 257
LI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+PSPFE+ VVTTTTH
Sbjct: 183 LIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTH 242
Query: 258 KSLRGPRGAMIFFRKGVKEIN-KQGKE 283
K+LRG R MIF+R+GV+ ++ K GKE
Sbjct: 243 KTLRGCRAGMIFYRRGVRSVDPKTGKE 269
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 305 bits (782), Expect = e-102
Identities = 169/272 (62%), Positives = 208/272 (76%)
Query: 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 83
L DPE+ ++++ EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RY
Sbjct: 5 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRY 64
Query: 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 143
YGG E +D E LCQ+RALEAF LDP +WGVNVQ SGSP+N VYTALL+PHDRIM LD
Sbjct: 65 YGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLD 124
Query: 144 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA 203
LP GGHL+HGY +D K+ISA SIFFE+MPY+LN TG IDY+QL +A LFRP+LI+AG
Sbjct: 125 LPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT 184
Query: 204 SAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 263
SAYARL DY R+R+VC++ KA +LADMAHISGLVAA VIPSPF++AD+VTTTTHK+LRG
Sbjct: 185 SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 244
Query: 264 RGAMIFFRKGVKEINKQGKEFTCRCFMIMKKK 295
R +IF+RKGVK ++ + F
Sbjct: 245 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINF 276
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 276 bits (708), Expect = 4e-92
Identities = 116/254 (45%), Positives = 165/254 (64%), Gaps = 10/254 (3%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
L DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
EY+D+ E L ++RA + F + Q SG+ +N VY +L+ D ++ ++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANV----QPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 206
GGHL+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY
Sbjct: 120 GGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266
R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 267 MIFFRKGV-KEINK 279
MI ++ K+I+K
Sbjct: 235 MILCQEQFAKQIDK 248
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 274 bits (701), Expect = 6e-91
Identities = 121/254 (47%), Positives = 167/254 (65%), Gaps = 10/254 (3%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
+ D E+ +E EK RQ + +ELI SEN+TS VMQA GS +TNKY+EGYPG RYYGG
Sbjct: 7 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGG 66
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
EY+D+ E L RA E F D NVQ SGS +NF VYTALL+P D ++ ++L H
Sbjct: 67 CEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAH 122
Query: 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 206
GGHL+HG ++ + +PY ++ TG+IDY LEK A +PK+I+ G SAY
Sbjct: 123 GGHLTHG-----SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAY 176
Query: 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266
+ + D+ ++R++ + A + DMAH++GLVAAGV P+P +A VVTTTTHK+L GPRG
Sbjct: 177 SGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGG 236
Query: 267 MIFFRKGVKEINKQ 280
+I + G +E+ K+
Sbjct: 237 LILAKGGSEELYKK 250
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 100 bits (249), Expect = 1e-24
Identities = 31/278 (11%), Positives = 69/278 (24%), Gaps = 40/278 (14%)
Query: 46 WKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEY-IDMAESL-------- 96
+K L+ S G K+ G ++G + D+ +
Sbjct: 4 FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63
Query: 97 -------CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGH 149
+K A + D S +N V +AL+ D ++ H
Sbjct: 64 HEGPAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSV 119
Query: 150 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK----------LI 199
+ + + + D ++ + A P+ +
Sbjct: 120 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAV 179
Query: 200 VAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP----------SPFEYA 249
+ + +Y+ + K + D A + ++ P +
Sbjct: 180 IQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPG 239
Query: 250 DVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEFTCR 287
+V + HK G +K +
Sbjct: 240 IIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKH 277
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 98.1 bits (243), Expect = 1e-23
Identities = 31/256 (12%), Positives = 70/256 (27%), Gaps = 44/256 (17%)
Query: 67 GSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVN--VQSLSGSPS 124
G+V + + G + G+ E+ + +G + + G +
Sbjct: 53 GAVTQSMQAAMMRGDEAFSGSRSYYALA--------ESVK---NIFGYQYTIPTHQGRGA 101
Query: 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS--------IFFETMPYRLN 176
L+K ++ LD S+ + T+ S ++ I
Sbjct: 102 EQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRY 161
Query: 177 ESTGYIDYDQLEKSATLFRPKLIV---------AGASAYARLYDYERIRKVCNKQKAIML 227
+ G D + LE+ P + + L + + + + K ++
Sbjct: 162 DFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVV 221
Query: 228 ADMAHISGLVAAGVIPSP--------------FEYADVVTTTTHKSLRGPRGAMIFFRKG 273
D A + ++YAD++ + K P G ++ +
Sbjct: 222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDD 281
Query: 274 VKEINKQGKEFTCRCF 289
C
Sbjct: 282 SFFDVYTECRTLCVVQ 297
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 78.1 bits (191), Expect = 6e-17
Identities = 34/267 (12%), Positives = 73/267 (27%), Gaps = 45/267 (16%)
Query: 51 LIPSEN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR 106
L+PS + S A+ ++ G Y G+ + +A E F
Sbjct: 37 LLPSSAVYIDLLTDSGTNAMSDHQ---WAAMITGDEAYAGSRNYYDLK----DKAKELFN 89
Query: 107 LDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166
D + + G + ++ LLK + P H T
Sbjct: 90 YD-----YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCK 144
Query: 167 FFETM------PYRLNESTGYIDYDQLEKSATLFRPKLI---------VAGASAYARLYD 211
+ ++ G D +L+++ I + + +
Sbjct: 145 AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSN 204
Query: 212 YERIRKVCNKQKAIMLADMAHISGLVAAG--------------VIPSPFEYADVVTTTTH 257
+ + ++ + ++ D A VI ++YAD +T +
Sbjct: 205 LKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAK 264
Query: 258 KSLRGPRGAMIFFRKGVKEINKQGKEF 284
K G ++ R + +
Sbjct: 265 KDPLLNIGGLVAIRDNEEIFTLARQRC 291
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 71.0 bits (173), Expect = 2e-14
Identities = 29/254 (11%), Positives = 62/254 (24%), Gaps = 51/254 (20%)
Query: 51 LIPSEN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR 106
L+ S++ + S A+ ++ G Y G+E E + +
Sbjct: 37 LLNSKDIYIDLLTDSGTNAMSDKQ---WAGMMIGDEAYAGSENFYHLE--------KTVK 85
Query: 107 LDPEKWGVN--VQSLSGSPSNFQVYTALLKPHDRIMA---LDLPHGGHLSHGYQTDTKKI 161
E +G V + G + + +KP + +G
Sbjct: 86 ---ELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNG-----ATF 137
Query: 162 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI---------VAGASAYARLYDY 212
+ G ID ++L + I + +
Sbjct: 138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANM 197
Query: 213 ERIRKVCNKQKAIMLADMAHIS--------------GLVAAGVIPSPFEYADVVTTTTHK 258
+ ++ + + D + ++ F YAD T + K
Sbjct: 198 RAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK 257
Query: 259 SLRGPRGAMIFFRK 272
G +
Sbjct: 258 DCLVNIGGFLCMND 271
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 39.9 bits (92), Expect = 3e-04
Identities = 27/229 (11%), Positives = 58/229 (25%), Gaps = 20/229 (8%)
Query: 65 AVGSVMTNKYSEGYPGARYYGGNEYIDMA------ESLCQKRALEAFRLDPEKWGVNVQS 118
+ R + A +L K F+
Sbjct: 77 YSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATP 136
Query: 119 LSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178
+S S +A K + + + + SH +++ + L+
Sbjct: 137 ISTGMSISLCLSAARKKYGSNVVI----YPYASHKSPIKAVSFVGMNMRL--VETVLDGD 190
Query: 179 TGYIDYDQLEKSATLFRPK------LIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 232
Y+ + +E + L D I K+C + + A+
Sbjct: 191 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 250
Query: 233 ISGLVAAGVIPSPF--EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279
D V +++ K+L P G + + + I +
Sbjct: 251 AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE 299
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 34.4 bits (78), Expect = 0.014
Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 120 SGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST 179
S +N ++ LL D I++ L H + K+ + + + RL E+
Sbjct: 113 SCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAR 172
Query: 180 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 239
L + +F S + + + + + +K A+++ D +H G V
Sbjct: 173 EAGARHVLIATDGVF---------SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGE 223
Query: 240 GVIPSPFEY-----ADVVTTTTHKSLRGPRGAMIFFRKGVKE 276
S D++T T K+L G G RK V E
Sbjct: 224 NGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVE 265
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 27.6 bits (60), Expect = 1.9
Identities = 23/176 (13%), Positives = 47/176 (26%), Gaps = 37/176 (21%)
Query: 8 AVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVG 67
+ + W + ++ + + + + L PSE +
Sbjct: 187 EILGDLGKEIPWGEDID---TEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNK 243
Query: 68 SVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNF 126
+ + Y G G + + ++ L+PE + +++ G P
Sbjct: 244 PEICRAFDLEYRGVEISSGGQREHRHD--ILVEQIKEKGLNPESFEFYLKAFRYGMP--- 298
Query: 127 QVYTALLKPH-------DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175
PH +R++ D I V I F RL
Sbjct: 299 --------PHGGFGLGAERLIKQ------------MLDLPNIREV-ILFPRDRRRL 333
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia
coli [TaxId: 562]}
Length = 60
Score = 24.9 bits (54), Expect = 2.6
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 15 NGVTWPKQLNAPLEVVDPEIA 35
NGV+ + P+ ++ PE+A
Sbjct: 15 NGVSVDYETETPMTLLVPEVA 35
>d2fbaa1 a.102.1.1 (A:1-492) Glucoamylase {Yeast (Saccharomycopsis
fibuligera) [TaxId: 4944]}
Length = 492
Score = 25.6 bits (55), Expect = 10.0
Identities = 11/106 (10%), Positives = 24/106 (22%), Gaps = 5/106 (4%)
Query: 78 YPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK-PH 136
YP Y G L A + ++ + N+ + +
Sbjct: 346 YPEDVYNGDGSSEGNPWFLATAYAAQVPYKLAYDAKSASNDITINKINYDFFNKYIVDLS 405
Query: 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSI----FFETMPYRLNES 178
A + G + F + + +N+
Sbjct: 406 TINSAYQSSDSVTIKSGSDEFNTVADNLVTFGDSFLQVILDHINDD 451
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,125,998
Number of extensions: 51057
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 15
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)