BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022565
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HX0|A Chain A, Three-Dimensional Structure Of The Hypothetical Protein
From Salmonella Cholerae-Suis (Aka Salmonella Enterica)
At The Resolution 1.55 A. Northeast Structural Genomics
Target Scr59
Length = 154
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 103 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFM 161
G++V ++ +F QQ RA I G +++V LR T + G FE++SL+G+
Sbjct: 28 GQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLE 86
Query: 162 LT 163
LT
Sbjct: 87 LT 88
>pdb|2NMU|A Chain A, Crystal Structure Of The Hypothetical Protein From
Salmonella Typhimurium Lt2. Northeast Structural
Genomics Consortium Target Str127
Length = 156
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 103 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFM 161
G++V ++ +F QQ RA I G +++V LR T + G FE++SL+G+
Sbjct: 28 GQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLE 86
Query: 162 LT 163
LT
Sbjct: 87 LT 88
>pdb|2P6Y|A Chain A, X-Ray Structure Of The Protein Q9km02_vibch From Vibrio
Cholerae At The Resolution 1.63 A. Northeast Structural
Genomics Consortium Target Vcr80
Length = 142
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 98 ITINAGEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSL 156
+ + G D+ +++ QQ A I S G +S + +R DS TL FEILSL
Sbjct: 7 LRLTRGXDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSL 65
Query: 157 SGSF 160
SG+
Sbjct: 66 SGTL 69
>pdb|4H2F|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form I (Open)
In Complex With Adenosine
pdb|4H2G|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Adenosine
Length = 546
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 120 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 168
++CIL+ G+ S + R + GT+T+E +L G+F L + +G+
Sbjct: 382 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 426
>pdb|4H1Y|P Chain P, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Psb11552
Length = 546
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 120 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 168
++CIL+ G+ S + R + GT+T+E +L G+F L + +G+
Sbjct: 382 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 426
>pdb|4H1S|A Chain A, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
pdb|4H1S|B Chain B, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
Length = 530
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 120 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 168
++CIL+ G+ S + R + GT+T+E +L G+F L + +G+
Sbjct: 360 SMCILNGGGIRSPIDER----NNGTITWENLAAVLPFGGTFDLVQLKGS 404
>pdb|4H2I|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Iii
(Closed) In Complex With Ampcp
Length = 532
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 120 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 168
++CIL+ G+ S + R + GT+T+E +L G+F L + +G+
Sbjct: 360 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 404
>pdb|4H2B|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Baicalin
Length = 547
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 120 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 168
++CIL+ G+ S + R + GT+T+E +L G+F L + +G+
Sbjct: 383 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 427
>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
Length = 196
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 11 WIAWMKIVISSVDRSFFMFQFVTILALPVETEVVSSQSNDQVASKVSASALFIYVKSSAL 70
+ ++ VI + DR + + L L ++S + ND VAS + A LF+ +
Sbjct: 1 MMGYIPYVIENTDRGERSYDIYSRL-LKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEK 59
Query: 71 DLPIFLN 77
D+ +++N
Sbjct: 60 DIGLYIN 66
>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
Length = 196
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 11 WIAWMKIVISSVDRSFFMFQFVTILALPVETEVVSSQSNDQVASKVSASALFIYVKSSAL 70
+ ++ VI + DR + + L L ++S + ND VAS + A LF+ +
Sbjct: 1 MMGYIPYVIENTDRGERSYDIYSRL-LKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEK 59
Query: 71 DLPIFLN 77
D+ +++N
Sbjct: 60 DIGLYIN 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,329,685
Number of Sequences: 62578
Number of extensions: 251815
Number of successful extensions: 443
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 12
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)