BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022565
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
GN=ESC PE=2 SV=1
Length = 311
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 12/122 (9%)
Query: 96 HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQP---------DSSGGTLT 146
HV+ ++ G D++ V +++++ R + +L NG +SNVTLRQP GG +T
Sbjct: 116 HVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVT 175
Query: 147 YEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVG 206
GRFEILSL+G+ + + +S+ LA G+VVGG+V L+A+ PV ++
Sbjct: 176 LHGRFEILSLTGTVLPPPAPPGAGG---LSIFLAGGQGQVVGGSVVAPLIASAPVILMAA 232
Query: 207 SF 208
SF
Sbjct: 233 SF 234
>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
Length = 632
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 103 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSF 160
G+D+ ++ ++Q P +A +LSA G +S TLR D +G L E R EIL+LSGS
Sbjct: 480 GQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHLLSE-RLEILALSGSL 537
>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
GN=glmU PE=3 SV=1
Length = 621
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 103 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFM 161
G+D+ ++ F++Q P +A +LSA G +S TLR D + L E R EIL+LSGS
Sbjct: 478 GQDLKQELERFARQQPLQAGFVLSAVGSLSQATLRLADQTEDYLLSE-RLEILALSGSLC 536
Query: 162 LTESQGTRSRSGGMSVSLASPD--GRVVGG 189
G+ + LA D GR GG
Sbjct: 537 ----------PDGVHLHLAVADAQGRTWGG 556
>sp|P30002|TEGU_HHV6G Large tegument protein OS=Human herpesvirus 6A (strain GS) GN=U31
PE=3 SV=1
Length = 2077
Score = 35.8 bits (81), Expect = 0.35, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 204 VVGSFLPGNQQEQKPKKQKAESIPA--IVTPA---PSIVGVIPVNNAEKEGTDGHRQQNS 258
++ P N + +P KQ +E++ + P P++ G++P + + TD + + S
Sbjct: 1977 ILNQLPPNNTESTRPGKQTSETLTTKNLSEPKFKKPAVTGLMPKSQSIILSTDTNVPETS 2036
Query: 259 SPLKPNTASSPFR-----RDNWPTIQEPINST 285
+K NTAS+ + R+ E IN+T
Sbjct: 2037 PDVKANTASAAIKDVTLAREKINEFSESINTT 2068
>sp|P52340|DEN_HHV6U Deneddylase U31 OS=Human herpesvirus 6A (strain Uganda-1102) GN=U31
PE=3 SV=1
Length = 2077
Score = 35.4 bits (80), Expect = 0.53, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 204 VVGSFLPGNQQEQKPKKQKAESI--PAIVTPA---PSIVGVIPVNNAEKEGTDGHRQQNS 258
++ P N + +P KQ +E++ + P P++ G++P + + TD + + S
Sbjct: 1977 ILNQLPPNNTESTRPGKQTSETLTNKNLSEPKFKKPAVTGLMPKSQSIILSTDTNVPETS 2036
Query: 259 SPLKPNTASSPFR-----RDNWPTIQEPINST 285
+K NTAS+ + R+ E IN+T
Sbjct: 2037 PDVKANTASAAIKDVTLAREKINEFSESINTT 2068
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo
sapiens GN=CTDP1 PE=1 SV=3
Length = 961
Score = 35.0 bits (79), Expect = 0.64, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 210 PGNQQEQKPKKQKAESIPAIVTPAPSI---------VGVIPVNNAEKEGTDGHRQQNSSP 260
PG+++ Q KK + P+P + GV P N EK + + + ++P
Sbjct: 333 PGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATP 392
Query: 261 LKPNTASSPFRRDNWPTIQEPINS 284
P RD WP Q P +S
Sbjct: 393 RDSPRPGKPDERDIWPPAQAPTSS 416
>sp|P17971|KCNAL_DROME Potassium voltage-gated channel protein Shal OS=Drosophila
melanogaster GN=Shal PE=1 SV=2
Length = 571
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 184 GRVVGG--AVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAE 224
G++VGG +++G+LV A PV V+V +F Q Q+ K+KA+
Sbjct: 383 GKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQ 425
>sp|Q8I4B0|KCNSK_CAEEL Potassium voltage-gated channel protein shk-1 OS=Caenorhabditis
elegans GN=shk-1 PE=2 SV=1
Length = 536
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 181 SPDGRVVGG--AVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAE 224
SP G+VVGG A+ G+L A PV ++V +F +QE + K++
Sbjct: 482 SPFGKVVGGMCAMIGVLTLALPVPIIVANFKHFYRQENRLASMKSK 527
>sp|Q81CH1|CLPP1_BACCR ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
cereus (strain ATCC 14579 / DSM 31) GN=clpP1 PE=3 SV=1
Length = 193
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 43 VVSSQSNDQVASKVSASALFIYVKSSALDLPIFLN 77
++ S+ NDQVAS V A LF+ + + D+ +++N
Sbjct: 31 IIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYIN 65
>sp|Q5RAJ5|STK36_PONAB Serine/threonine-protein kinase 36 OS=Pongo abelii GN=STK36 PE=2
SV=1
Length = 1315
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 25/143 (17%)
Query: 137 QPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSR--SGGMSVSLASPDGRVVGGAVAGL 194
QPD S TL + +L +L E+ SR S SL + V+ G + GL
Sbjct: 574 QPDDSERTLRRD------NLMCFTVLCEAMDGNSRAISKAFYSSLLTTKQVVLDGLLRGL 627
Query: 195 LVAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHR 254
V PV PG Q +P ++++E IP ++ A + + PV + DG
Sbjct: 628 TVPQLPVHTP-----PGAPQVSQPLREQSEDIPGAISSALAAICTAPVGL--PDCWDGKE 680
Query: 255 Q----------QNSSPLKPNTAS 267
Q ++SS L+P+ S
Sbjct: 681 QVCWHLANQLTEDSSQLRPSLVS 703
>sp|Q736T1|CLPP1_BACC1 ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
cereus (strain ATCC 10987) GN=clpP1 PE=3 SV=1
Length = 193
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 43 VVSSQSNDQVASKVSASALFIYVKSSALDLPIFLN 77
++ S+ NDQVAS V A LF+ + + D+ +++N
Sbjct: 31 IIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYIN 65
>sp|Q6HHU9|CLPP1_BACHK ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
thuringiensis subsp. konkukian (strain 97-27) GN=clpP1
PE=3 SV=1
Length = 193
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 43 VVSSQSNDQVASKVSASALFIYVKSSALDLPIFLN 77
++ S+ NDQVAS V A LF+ + + D+ +++N
Sbjct: 31 IIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYIN 65
>sp|Q81PL4|CLPP1_BACAN ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
anthracis GN=clpP1 PE=3 SV=1
Length = 193
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 43 VVSSQSNDQVASKVSASALFIYVKSSALDLPIFLN 77
++ S+ NDQVAS V A LF+ + + D+ +++N
Sbjct: 31 IIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYIN 65
>sp|Q63AG0|CLPP1_BACCZ ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
cereus (strain ZK / E33L) GN=clpP1 PE=3 SV=1
Length = 193
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 43 VVSSQSNDQVASKVSASALFIYVKSSALDLPIFLN 77
++ S+ NDQVAS V A LF+ + + D+ +++N
Sbjct: 31 IIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYIN 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,211,008
Number of Sequences: 539616
Number of extensions: 4378128
Number of successful extensions: 12766
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 12748
Number of HSP's gapped (non-prelim): 50
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)