Query 022565
Match_columns 295
No_of_seqs 154 out of 577
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 100.0 2.1E-29 4.5E-34 207.5 11.3 112 93-209 1-114 (120)
2 COG1661 Predicted DNA-binding 99.9 8.7E-26 1.9E-30 193.7 14.3 114 91-211 7-123 (141)
3 PF08387 FBD: FBD; InterPro: 81.8 0.42 9.1E-06 34.1 -0.1 42 16-59 6-50 (51)
4 PF03306 AAL_decarboxy: Alpha- 68.4 18 0.00039 33.6 6.8 101 102-208 88-199 (220)
5 TIGR01252 acetolac_decarb alph 51.9 70 0.0015 30.1 7.7 87 117-208 104-201 (232)
6 COG3527 AlsD Alpha-acetolactat 31.1 51 0.0011 31.4 3.3 98 103-204 93-201 (234)
7 PF11906 DUF3426: Protein of u 22.5 3.3E+02 0.0072 22.6 6.4 40 150-191 66-105 (149)
8 PF02196 RBD: Raf-like Ras-bin 22.4 3.5E+02 0.0077 20.5 6.5 44 92-137 9-54 (71)
9 smart00579 FBD domain in FBox 19.4 36 0.00077 25.1 -0.1 39 21-61 2-43 (72)
10 smart00455 RBD Raf-like Ras-bi 15.7 2.5E+02 0.0055 21.4 3.8 37 92-128 8-46 (70)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.96 E-value=2.1e-29 Score=207.52 Aligned_cols=112 Identities=32% Similarity=0.445 Sum_probs=101.2
Q ss_pred ceeEEEEecCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCC--CCCceeeeccEEEEEeeeeeeecCCCCCcC
Q 022565 93 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS--SGGTLTYEGRFEILSLSGSFMLTESQGTRS 170 (295)
Q Consensus 93 ~kphVIRL~pGEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~--~~~t~t~eGpfEILSLsGnIs~~dgg~t~~ 170 (295)
||+|++||+|||||+++|++||+++++.+++++|+|++++|+|++++. .....+++|+|||+||+|||+..++ +
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~ 76 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K 76 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence 799999999999999999999999999999999999999999999964 3358899999999999999999655 4
Q ss_pred CCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeC
Q 022565 171 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL 209 (295)
Q Consensus 171 p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~ 209 (295)
|+.|+|++|+|+||+++||||.++.+ ..++||+|..+.
T Consensus 77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~ 114 (120)
T PF03479_consen 77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITELS 114 (120)
T ss_dssp EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEET
T ss_pred CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEec
Confidence 89999999999999999999998877 668999999983
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.93 E-value=8.7e-26 Score=193.72 Aligned_cols=114 Identities=20% Similarity=0.311 Sum_probs=105.8
Q ss_pred CCceeEEEEecCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeeccEEEEEeeeeeeecCCCC
Q 022565 91 TNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQG 167 (295)
Q Consensus 91 ~~~kphVIRL~pGEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~~~---~t~t~eGpfEILSLsGnIs~~dgg~ 167 (295)
+.-+.|++||+||||+++.|.+||+++.+.+++++|||++++++|+|++.++ .+++++|+|||+||.|||+.++
T Consensus 7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~--- 83 (141)
T COG1661 7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD--- 83 (141)
T ss_pred ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence 4457899999999999999999999999999999999999999999999765 4889999999999999999998
Q ss_pred CcCCCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeCCC
Q 022565 168 TRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPG 211 (295)
Q Consensus 168 t~~p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~~~ 211 (295)
|+.|+|++|++++|+++||||.++++.. ++||+|.++...
T Consensus 84 ---p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~ 123 (141)
T COG1661 84 ---PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGE 123 (141)
T ss_pred ---CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEcccc
Confidence 7889999999999999999999999866 899999999443
No 3
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=81.82 E-value=0.42 Score=34.14 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=38.1
Q ss_pred hhhhhhcccceEEEEeeeeeecccee---EEEecccchhhcceeeee
Q 022565 16 KIVISSVDRSFFMFQFVTILALPVET---EVVSSQSNDQVASKVSAS 59 (295)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 59 (295)
..+..|+.++|-+++|.++...+.|+ +|+..++.-| +|+.|.
T Consensus 6 ~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~L--k~m~i~ 50 (51)
T PF08387_consen 6 SSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVL--KKMTIS 50 (51)
T ss_pred CCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhh--cEEEEE
Confidence 45789999999999999999999998 9999999999 888875
No 4
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=68.40 E-value=18 Score=33.56 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCCC-------ceeeeccEEEEEeeeeee----ecCCCCCcC
Q 022565 102 AGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG-------TLTYEGRFEILSLSGSFM----LTESQGTRS 170 (295)
Q Consensus 102 pGEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~~~~-------t~t~eGpfEILSLsGnIs----~~dgg~t~~ 170 (295)
.-++|-+.|.+..... .....+-.-|..+.+++|-.....+ ...-.-.||.=.+.|++. |.--++..-
T Consensus 88 ~~~~l~~~l~~~~~~~-N~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~~gi~v 166 (220)
T PF03306_consen 88 SKEELEAKLDELLPSK-NLFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYMGGINV 166 (220)
T ss_dssp EHHHHHHHHHHHSS-T-TS-EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGGBTTB-
T ss_pred CHHHHHHHHHHhcCCC-ceEEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhccccCC
Confidence 3457777777766533 4467778899999999998655432 111133477777777766 432222223
Q ss_pred CCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEe
Q 022565 171 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 208 (295)
Q Consensus 171 p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf 208 (295)
+--|||..=.| |.+||||.+-.+-. +++-+..+
T Consensus 167 ~G~HlHFls~D---r~~GGHvld~~~~~--~~v~~~~~ 199 (220)
T PF03306_consen 167 PGFHLHFLSDD---RTFGGHVLDFELDN--GTVEIDVF 199 (220)
T ss_dssp CEEEEEEEETT---SS-EEEEEEEEEEE--EEEEEEE-
T ss_pred ceEEEEEecCC---CCCCCCeEEEEece--EEEEEEec
Confidence 44466665543 78999999876644 44444444
No 5
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=51.89 E-value=70 Score=30.06 Aligned_cols=87 Identities=15% Similarity=0.277 Sum_probs=51.9
Q ss_pred CCccEEEEEeeceeeeEEEeCCCCCCC-------ceeeeccEEEEEeeeeee----ecCCCCCcCCCCceEEEEeCCCCc
Q 022565 117 GPRAICILSANGVISNVTLRQPDSSGG-------TLTYEGRFEILSLSGSFM----LTESQGTRSRSGGMSVSLASPDGR 185 (295)
Q Consensus 117 ~~iai~ILSAIGAVSnVTLr~~d~~~~-------t~t~eGpfEILSLsGnIs----~~dgg~t~~p~~HlHISLAd~dGq 185 (295)
.....+-+-.-|..++++.|---...+ ...=.-.||+-...|++. |.--.+..-+-.|+|.. + |-|
T Consensus 104 ~~N~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi~v~G~HlHFi--s-dDr 180 (232)
T TIGR01252 104 GKNVFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGINVAGYHLHFI--S-EDR 180 (232)
T ss_pred CCccEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhccccCCceEEEEEe--c-CCC
Confidence 345677888889999999998543321 111133488888888776 33211222233455554 3 337
Q ss_pred EEeeeecCceEEecceEEEEEEe
Q 022565 186 VVGGAVAGLLVAAGPVQVVVGSF 208 (295)
Q Consensus 186 V~GGHL~galIAAtTVEVVVgsf 208 (295)
.+||||.+-.+.. +.+-+..+
T Consensus 181 ~~GGHVld~~~~~--~~~~i~~~ 201 (232)
T TIGR01252 181 TFGGHVLDYIIDN--GTLEIGQI 201 (232)
T ss_pred CCCcceeEEEeee--eEEEEeec
Confidence 7899999766543 45545544
No 6
>COG3527 AlsD Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.06 E-value=51 Score=31.38 Aligned_cols=98 Identities=17% Similarity=0.257 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCCC-------ceeeeccEEEEEeeeeee----ecCCCCCcCC
Q 022565 103 GEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG-------TLTYEGRFEILSLSGSFM----LTESQGTRSR 171 (295)
Q Consensus 103 GEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~~~~-------t~t~eGpfEILSLsGnIs----~~dgg~t~~p 171 (295)
-||+.+.|..+..-.+. .+-+..-|....+..|..-.+.. ...-.=-||.=...|++. |....+-.-+
T Consensus 93 ~e~~~~~i~~~~~s~Nl-F~aiki~G~F~~v~~R~vp~q~~py~p~~e~~~~QPvf~~Env~GtiVGf~tP~~~~Gl~v~ 171 (234)
T COG3527 93 SEDVFSGISGTMDSENL-FYAIKITGIFKYVHVRMVPKQTPPYTPLAEVVKIQPVFEFENVKGTIVGFWTPEYFEGLAVA 171 (234)
T ss_pred HHHHHHHhhcccCCCce-EEEEEEeccccceEEEEEeccCCCCccHhhhhccCCceEEeecCceEEEecChHHhcccccC
Confidence 34888888776554443 44456667777777776443321 111111244445555554 4432222223
Q ss_pred CCceEEEEeCCCCcEEeeeecCceEEecceEEE
Q 022565 172 SGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVV 204 (295)
Q Consensus 172 ~~HlHISLAd~dGqV~GGHL~galIAAtTVEVV 204 (295)
-.|+|+. + |++.+|||+..-.+-.+++||=
T Consensus 172 GyHlHFi--t-DdrtfGGHV~D~~~~~~~veI~ 201 (234)
T COG3527 172 GYHLHFI--T-DDRTFGGHVLDFEIENGEVEIG 201 (234)
T ss_pred ceEEEEe--e-cCccccceEEEEEeeeEEEEEe
Confidence 3466654 3 8899999999877776666553
No 7
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=22.49 E-value=3.3e+02 Score=22.65 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=31.8
Q ss_pred cEEEEEeeeeeeecCCCCCcCCCCceEEEEeCCCCcEEeeee
Q 022565 150 RFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAV 191 (295)
Q Consensus 150 pfEILSLsGnIs~~dgg~t~~p~~HlHISLAd~dGqV~GGHL 191 (295)
.-+.+-++|++.+.... ..++.++-++|.|.+|+++.-.+
T Consensus 66 ~~~~l~v~g~i~N~~~~--~~~~P~l~l~L~D~~g~~l~~r~ 105 (149)
T PF11906_consen 66 GPGVLVVSGTIRNRADF--PQALPALELSLLDAQGQPLARRV 105 (149)
T ss_pred CCCEEEEEEEEEeCCCC--cccCceEEEEEECCCCCEEEEEE
Confidence 34788889999987664 35889999999999999875444
No 8
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=22.42 E-value=3.5e+02 Score=20.52 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=32.9
Q ss_pred CceeEEEEecCCCcHHHHHHHHHHhCCc--cEEEEEeeceeeeEEEeC
Q 022565 92 NFTPHVITINAGEDVMMKVISFSQQGPR--AICILSANGVISNVTLRQ 137 (295)
Q Consensus 92 ~~kphVIRL~pGEDVvesI~~farq~~i--ai~ILSAIGAVSnVTLr~ 137 (295)
+-++-++.+.||+-|-+.|...|++++. ..|.+.-.| .+-.|-+
T Consensus 9 ~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~--~~k~l~~ 54 (71)
T PF02196_consen 9 NGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG--EKKPLDW 54 (71)
T ss_dssp TTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE--EEEEE-T
T ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC--CCccccC
Confidence 4567889999999999999999999654 577777777 5555555
No 9
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=19.44 E-value=36 Score=25.09 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=32.5
Q ss_pred hcccceEEEEeeeeeecccee---EEEecccchhhcceeeeeee
Q 022565 21 SVDRSFFMFQFVTILALPVET---EVVSSQSNDQVASKVSASAL 61 (295)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 61 (295)
|+..+|=++|+.+....+.|+ +|+..++.-| +|++|...
T Consensus 2 cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~L--k~~~i~~~ 43 (72)
T smart00579 2 CLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCL--KKLTISVE 43 (72)
T ss_pred cchheEEEEEEEeccCcHHHHHHHHHHHhcchhh--eEEEEEee
Confidence 777888889999988888888 8999988888 88877653
No 10
>smart00455 RBD Raf-like Ras-binding domain.
Probab=15.66 E-value=2.5e+02 Score=21.35 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=28.9
Q ss_pred CceeEEEEecCCCcHHHHHHHHHHhCCc--cEEEEEeec
Q 022565 92 NFTPHVITINAGEDVMMKVISFSQQGPR--AICILSANG 128 (295)
Q Consensus 92 ~~kphVIRL~pGEDVvesI~~farq~~i--ai~ILSAIG 128 (295)
+-+...+.++||+-|.+.|...|++++. ..+.+.-.|
T Consensus 8 ~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 8 DNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 3467789999999999999999999655 345555545
Done!