BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022566
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++++D+DG TPLH A Q+G ++ V++L+KY DVN DN G TPLH+A + +I +VL
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D +G TPLH+A Q + +I +VLL GAD + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 81 ITPLHLAAIRGH 92
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
W PL + +++ D G TPLH A + G ++ V++L+K DVN
Sbjct: 48 WTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
+D+ G+TPLH+A + + +I +VLL NGAD + + K GKTA D+S+ G + DLA+
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE----DLAE 163
Query: 288 LLKIL 292
+L+ L
Sbjct: 164 ILQKL 168
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPLH A G ++ V++L+K DVN D+ G TPLH+A + + +I +VL
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L NGAD + G T L ++ G
Sbjct: 100 LKNGADVNASDSHGFTPLHLAAKRGH 125
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D GWTPLH+A + +I +VLL NGAD + K G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 81 VTPLHLAARRGH 92
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
+ PL + +++ DKDG TPLH A + G ++ V++L+K DVN
Sbjct: 48 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
D +G+TPLH+A + + +I +VLL GAD + + K GKTA D+S+ G + DLA+
Sbjct: 108 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNE----DLAE 163
Query: 288 LLK 290
+L+
Sbjct: 164 ILQ 166
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ DKDG TPLH A + G ++ V++L+K DVN D +G+TPLH+A + + +I +VL
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L GAD + K KDG T L ++ G
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGH 125
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D +G+TPLH+A + + +I +VLL GAD + K KDG
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 81 YTPLHLAAREGH 92
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 165 TAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNV 224
+ W PL + + +++VD G TPL A G ++ V++L+K
Sbjct: 45 ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 225 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD 284
DVN D EG TPLH+A + +I +VLL NGAD + + K GKTA D+S+ G + D
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE----D 160
Query: 285 LAKLLKIL 292
LA++L+ L
Sbjct: 161 LAEILQKL 168
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPLH A G ++ V++L+K DVN D+ G TPL +A + +I +VL
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L NGAD + +G T L ++ +G
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGH 125
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D GWTPLH+A + + +I +VLL NGAD + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 267 KTALDMSLCYGR 278
T L ++ +G
Sbjct: 81 MTPLRLAALFGH 92
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 163 ISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKY 222
+ A PL+ L + +++ D +G TPLH A G ++ V++L+K
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 223 NVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
DVN D G T I+I + N D+A++L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQ 214
NAT N G + PL + + +++ D G TPLH A G ++
Sbjct: 41 NATDNDG------YTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLE 94
Query: 215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 274
V++L+K+ DVN DN+G TPLH+A + + +I +VLL +GAD + + K GKTA D+S+
Sbjct: 95 IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 275 CYGRDFKSYDLAKLLK 290
G + DLA++L+
Sbjct: 155 DNGNE----DLAEILQ 166
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D DG TPLH A G ++ V++L+K DVN +D G TPLH+A + + +I +VL
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L +GAD + DG T L ++ YG
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGH 125
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN DN+G+TPLH+A + + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 267 KTALDMS------------LCYGRDFKSYD 284
T L ++ L +G D +YD
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYD 110
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ DK G TPLH A G ++ V++L+KY DVN D +G+TPLH+A + + +I +VL
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 168
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 12/97 (12%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G TPLH V G ++ +++L+KY DVN +D GWTPLH+A + +I +VLL GAD
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 260 SRKTKDGKTALDMS------------LCYGRDFKSYD 284
+ G T L ++ L YG D + D
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD 143
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D G TPLH+ + + + +I +VLL AD + K G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 267 KTALDMS------------LCYGRDFKSYD 284
T L ++ L YG D + D
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D DG TPLHYA + G + VKLLI DVN D++G TPLH A + +++I K+L
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
+ GAD + DG+T LD++ +G + ++ KLL+
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNE----EIVKLLE 156
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D DG TPLHYA + G + VKLLI DVN D++G TPLH A + +++I K+L
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
+ GAD + K DG+T L + G
Sbjct: 90 ISKGADVNAKDSDGRTPLHYAAKEGH 115
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G VK LI+ DVN +D++G TPLH A + +++I K+L+ GAD + K DG
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 267 KTALDMSLCYGR 278
+T L + G
Sbjct: 71 RTPLHYAAKEGH 82
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQ 214
NA N G PL +S + +D+ D G TPLH A G ++
Sbjct: 41 NAVDNTG------LTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLE 94
Query: 215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 274
V++L+KY DVN D G TPLH+A + +I +VLL GAD + + K GKTA D+S+
Sbjct: 95 IVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 275 CYGRDFKSYDLAK 287
G + DLAK
Sbjct: 155 DNGNE----DLAK 163
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 12/104 (11%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++VD G TPLH A G ++ V++L+K+ DV+ AD G+TPLH+A + + +I +VL
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 284
L GAD + G T L ++ L YG D + D
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++LI DVN DN G TPLH+A S + +I +VLL +GAD G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 267 KTALDMS------------LCYGRDFKSYDL 285
T L ++ L YG D ++D+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDM 111
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 65/98 (66%), Gaps = 4/98 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++VD +G TPLH A +G ++ V++L+KY DVN D G TPL++A + +I +VL
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
L +GAD + + K GKTA D+S+ D + DLA++L+
Sbjct: 121 LKHGADVNAQDKFGKTAFDISI----DIGNEDLAEILQ 154
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
++ D G TPLH A VG ++ V++L++ DVN D G TPLH+A + +I +VLL
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 254 INGADKSRKTKDGKTALDMSLCYGR 278
GAD + K G T L ++ +G
Sbjct: 89 KYGADVNAKDATGITPLYLAAYWGH 113
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ D N D+ G TPLH+A + +I +VLL NGAD + +G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 69 TTPLHLAASLGH 80
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
+ PL + +++ DKDG TPLH A + G ++ V++L+K DVN
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
D +G+TPLH+A + + +I +VLL GAD + + K GKT D+++ G + D+A+
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHE----DIAE 151
Query: 288 LLK 290
+L+
Sbjct: 152 VLQ 154
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ DKDG TPLH A + G ++ V++L+K DVN D +G+TPLH+A + + +I +VL
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L GAD + K KDG T L ++ G
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGH 113
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D +G+TPLH+A + + +I +VLL GAD + K KDG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 69 YTPLHLAAREGH 80
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D DG TPLHYA + G + VKLL+ D N D++G TPLH A ++ +++I K+LL G
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 257 ADKSRKTKDGKTALDMSLCYGRD 279
AD + DG+T LD++ +G +
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNE 149
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
++ D DG TPLHYA + G + VKLL+ D N D++G TPLH A ++ +++I K+LL
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 254 INGADKSRKTKDGKTALDMSLCYGR 278
GAD + K DG+T L + G
Sbjct: 91 SKGADPNAKDSDGRTPLHYAAENGH 115
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G VK L++ D N +D++G TPLH A ++ +++I K+LL GAD + K DG
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 267 KTALDMSLCYGR 278
+T L + G
Sbjct: 71 RTPLHYAAENGH 82
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQ 214
NA+ ++G W PL + +++ D G TPLH A G ++
Sbjct: 41 NASDHVG------WTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLE 94
Query: 215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 274
V++L+K DVN D+ G+TPLH+A + +I +VLL +GAD + + K GKTA D+S+
Sbjct: 95 VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 275 CYGRDFKSYDLAKLLKIL 292
G + DLA++L+ L
Sbjct: 155 DNGNE----DLAEILQKL 168
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPLH A G ++ V++L+K DVN D+ G TPLH+A + ++ +VL
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L NGAD + +G T L ++ G
Sbjct: 100 LKNGADVNANDHNGFTPLHLAANIGH 125
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN +D+ GWTPLH+A + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 81 VTPLHLAADRGH 92
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 57/87 (65%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D DG TPLH+A + G + VKLLI DVN D++G TPLH A ++ ++++ K+L
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRD 279
+ GAD + DG+T LD++ +G +
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNE 149
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D DG TPLH+A + G + VKLLI DVN D++G TPLH A ++ ++++ K+L
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
+ GAD + K DG+T L + G
Sbjct: 90 ISKGADVNAKDSDGRTPLHHAAENGH 115
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G VK LI+ DVN +D++G TPLH A ++ ++++ K+L+ GAD + K DG
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 267 KTALDMSLCYGR 278
+T L + G
Sbjct: 71 RTPLHHAAENGH 82
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D GATPLH A G ++ V++L+K+ DVN D EG+TPLH+A + +I +VL
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 168
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 12/104 (11%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPLH A + G ++ V++L+KY DVN DN G TPLH+A + + +I +VL
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 284
L +GAD + K +G T L ++ L YG D + D
Sbjct: 100 LKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D G TPLH+A ++ + +I +VLL GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 81 ATPLHLAADNGH 92
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA 229
PL + Q+ +++ D G TPLH A G ++ V++L+K+ DVN
Sbjct: 42 PLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
Query: 230 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
D GWTPLH+A S +I +VLL +GAD + + G TA D+S+ G++ DLA++L
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQE----DLAEIL 157
Query: 290 K 290
+
Sbjct: 158 Q 158
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D +G TPLH A G ++ V++L+K DVN +D+ G TPLH+A + +I +VL
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L +GAD + + G T L ++ G+
Sbjct: 92 LKHGADVNAYDRAGWTPLHLAALSGQ 117
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A G V++L+ DVN D+ G TPLH+A + +I +VLL NGAD + G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 267 KTALDMS------------LCYGRDFKSYDLA 286
T L ++ L +G D +YD A
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRA 104
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D DG TPLH A G ++ V++L+KY DVN D G TPLH+A + +I +VL
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 168
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G+TPLH A +G + V++L+K+ DVN D +GWTPLH+A + + +I +VL
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L GAD + + G T L ++ G
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGH 125
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D++G TPLH+A + +I +VLL +GAD + + DG
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 267 KTALDMS------------LCYGRDFKSYD 284
T L ++ L YG D + D
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQD 110
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
+ PL + +++ DKDG TPLH A + G ++ V++L+K DVN
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
D +G+TPLH+A + + +I +VLL GAD + + K GKT D+++ G + D+A+
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNE----DIAE 151
Query: 288 LLK 290
+L+
Sbjct: 152 VLQ 154
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ DKDG TPLH A + G ++ V++L+K DVN D +G+TPLH+A + + +I +VL
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L GAD + K KDG T L ++ G
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGH 113
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D +G+TPLH+A + + +I +VLL GAD + K KDG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 69 YTPLHLAAREGH 80
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
W PL + +++ D G+TPLH A G ++ V++L+K DVN
Sbjct: 48 WTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
D+ G TPLH+A + +I +VLL GAD + + K GKTA D+S+ G + DLA+
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNE----DLAE 163
Query: 288 LLKIL 292
+L+ L
Sbjct: 164 ILQKL 168
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPLH A G ++ V++L+K DVN D G TPLH+A + +I +VL
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 284
L NGAD + K +G T L ++ L YG D + D
Sbjct: 100 LKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQD 143
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN AD GWTPLH+A + +I +VLL NGAD + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 267 KTALDMSLCYGR 278
T L ++ +G
Sbjct: 81 STPLHLAAHFGH 92
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 65/98 (66%), Gaps = 4/98 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++++D G+TPLH A + G ++ V++L+KY DVN D G TPLH+A + + +I +VL
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
L GAD + + K GKTA D+S+ G + DLA++L+
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQ 166
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPLH A +VG ++ V++L+K DVN D G TPLH+A + + +I +VL
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 284
L GAD + G T L ++ L YG D + D
Sbjct: 100 LKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQD 143
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D G TPLH+A + + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 81 STPLHLAAKRGH 92
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA 229
PL + + +++ DK G TPLH A G ++ V++L+K DVN
Sbjct: 50 PLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Query: 230 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
D G+TPLH+A + + +I +VLL GAD + + K GKTA D+S+ G + DLA++L
Sbjct: 110 DTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE----DLAEIL 165
Query: 290 KIL 292
+ L
Sbjct: 166 QKL 168
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPLH A G ++ V++L+K+ DVN AD G TPLH+A + +I +VL
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 284
L NGAD + G T L ++ L YG D + D
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQD 143
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D+ G TPLH+A + +I +VLL +GAD + K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 267 KTALDMSLCYGR 278
T L ++ YG
Sbjct: 81 DTPLHLAALYGH 92
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++++D G+TPLH A +G ++ V++L+K+ DVN D G TPLH+A + +I +VL
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 168
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPLH A G ++ V++L+K+ DVN D G TPLH+A + +I +VL
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L +GAD + G T L ++ G
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGH 125
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D G TPLH+A + +I +VLL +GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 81 STPLHLAALIGH 92
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D DG TPLH A + G + VKLL+ D N D++G TPLH+A ++ ++++ K+L
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L GAD + K DGKT L ++ G
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGH 115
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D DG TPLH A + G + VKLL+ D N D++G TPLH+A ++ ++++ K+LL G
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 257 ADKSRKTKDGKTALDMSLCYGRD 279
AD + DG+T LD++ +G +
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNE 149
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G VK L++ DVN +D++G TPLH+A ++ ++++ K+LL GAD + K DG
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 267 KTALDMSLCYGR 278
KT L ++ G
Sbjct: 71 KTPLHLAAENGH 82
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D+ G TPLH A ++ V++L+K+ DVN DN+G TPLH+A + +I +VL
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D +G TPLH+A + +I +VLL +GAD + DG
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 267 KTALDMSLCYGR 278
T L ++ +G
Sbjct: 81 STPLHLAALFGH 92
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++++D G+TPLH A +G ++ V++L+K+ DVN D G TPLH+A + +I +VL
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 168
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPLH A G ++ V++L+K+ DVN D G TPLH+A + +I +VL
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L +GAD + G T L ++ G
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGH 125
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D G TPLH+A + +I +VLL +GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 81 STPLHLAALIGH 92
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++++D G TPLH A + G ++ V++L+K+ DVN +D+ G TPLH+A + +I +VL
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D+ G TPLH+A + + +I +VLL +GAD + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 267 KTALDMSLCYGR 278
+T L ++ G
Sbjct: 81 RTPLHLAATVGH 92
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQ 214
NA N G PL S + +D+ D G TPLH A G ++
Sbjct: 41 NAADNTGTT------PLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLE 94
Query: 215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 274
V++L+K DVN D++G TPLH+A + +I +VLL +GAD + + K GKTA D+S+
Sbjct: 95 IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 275 CYGRDFKSYDLAKLLKIL 292
G + DLA++L+ L
Sbjct: 155 DNGNE----DLAEILQKL 168
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPLH A G ++ V++L+K+ DV+ +D G+TPLH+A + +I +VL
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYG 277
L NGAD + DG T L ++ +G
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWG 124
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN ADN G TPLH+A S + +I +VLL +GAD G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 267 KTALDMSLCYGR 278
T L ++ +G
Sbjct: 81 YTPLHLAAYWGH 92
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 56/85 (65%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ DK+G TPLH A + G ++ VKLL++ DVN D G TPLH+A ++ + ++ K+L
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 253 LINGADKSRKTKDGKTALDMSLCYG 277
L GAD + K K+G+T L ++ G
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNG 112
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
+G TPLH A + G ++ VKLL++ DVN D G TPLH+A ++ + ++ K+LL GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 259 KSRKTKDGKTALDMSLCYG 277
+ K K+G+T L ++ G
Sbjct: 61 VNAKDKNGRTPLHLAARNG 79
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ DK+G TPLH A + G ++ VKLL++ DVN D G TPLH+A ++ + ++ K+L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 253 LINGA 257
L GA
Sbjct: 121 LEAGA 125
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++++D G TPLH A + G ++ V++L+K+ DVN +D G TPLH+A + +I +VL
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D+ G TPLH+A + + +I +VLL +GAD + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 267 KTALDMSLCYGR 278
+T L ++ G
Sbjct: 81 RTPLHLAATVGH 92
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G TPLH A +G ++ V++L+K DVN N G TPLH+A + + +I +VLL +GAD
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 260 SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
+ + K GKTA D+S+ G + DLA++L+ L
Sbjct: 107 NAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L DVN D G TPLH+A + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 267 KTALDMS 273
+T L ++
Sbjct: 81 RTPLHLA 87
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++++D G TPLH A + G ++ V++L+K+ DVN D G TPLH+A + +I +VL
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D+ G TPLH+A + + +I +VLL +GAD + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 267 KTALDMSLCYGR 278
+T L ++ G
Sbjct: 81 RTPLHLAATVGH 92
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D+ G TPL+ A G ++ V++L+K DVN D G+TPLH+A + +IA+VL
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNE----DLAEILQKL 135
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D G TPL++A + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 267 KTALDMSLCYGR 278
T L ++ G
Sbjct: 81 FTPLHLAAFIGH 92
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 67.4 bits (163), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
+G TPLH A + G ++ VKLL++ DVN D G TPLH+A ++ + ++ K+LL GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 259 KSRKTKDGKTALDMS 273
+ K K+G+T L ++
Sbjct: 61 VNAKDKNGRTPLHLA 75
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ DK+G TPLH A + G ++ VKLL++ DVN D G TPLH+A ++ + ++ K+L
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 253 LINGA 257
L GA
Sbjct: 88 LEAGA 92
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ DK G TPLH A ++ V++L+K DVN D G TPLH+ + +I +VL
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
L +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D G TPLH+A + + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 267 KTALDMSLCYGR 278
+T L + YG
Sbjct: 81 ETPLHLVAMYGH 92
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+ + DK G PLH A G + +LL+K+ VNVAD +TPLH A +I K+L
Sbjct: 70 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 129
Query: 253 LINGADKSRKTKDGKTALDM 272
L +GAD ++K +DG T LD+
Sbjct: 130 LQHGADPTKKNRDGNTPLDL 149
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGW--TPLHIAIQSRNRDIAKVLLINGADKSRKTK 264
A + G +++VK L VN D EG TPLH A + + LL +GAD K K
Sbjct: 17 AAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 265 DGKTALDMSLCYGRDFKSYDLAKLL 289
G L + YG Y++A+LL
Sbjct: 76 GGLVPLHNACSYGH----YEVAELL 96
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+ + DK G PLH A G + +LL+K+ VNVAD +TPLH A +I K+L
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 253 LINGADKSRKTKDGKTALDM 272
L +GAD ++K +DG T LD+
Sbjct: 128 LQHGADPTKKNRDGNTPLDL 147
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGW--TPLHIAIQSRNRDIAKVLLINGADKSRKTK 264
A + G +++VK L VN D EG TPLH A + + LL +GAD K K
Sbjct: 15 AAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 265 DGKTALDMSLCYGRDFKSYDLAKLL 289
G L + YG Y++A+LL
Sbjct: 74 GGLVPLHNACSYGH----YEVAELL 94
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+ + DK G PLH A G + +LL+K+ VNVAD +TPLH A +I K+L
Sbjct: 72 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 131
Query: 253 LINGADKSRKTKDGKTALDM 272
L +GAD ++K +DG T LD+
Sbjct: 132 LQHGADPTKKNRDGNTPLDL 151
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGW--TPLHIAIQSRNRDIAKVLLINGADKSRKTK 264
A + G +++VK L VN D EG TPLH A + + LL +GAD K K
Sbjct: 19 AAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 265 DGKTALDMSLCYGRDFKSYDLAKLL 289
G L + YG Y++A+LL
Sbjct: 78 GGLVPLHNACSYGH----YEVAELL 98
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
KDG TPLH A + G + VK L+ DVN +G TPLH+A ++ + +I K+LL GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 258 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
D + ++KDG T ++ G +++ KLL
Sbjct: 67 DVNARSKDGNTPEHLAKKNGH----HEIVKLL 94
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ KDG TPLH A + G + VKLL+ DVN +G TP H+A ++ + +I K+L
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 253 LINGAD 258
GAD
Sbjct: 95 DAKGAD 100
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 153 NQNATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGA 212
++ A NLG S PL + + +D+ + G TPLH A G
Sbjct: 266 SKQANGNLGNKS--GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN 323
Query: 213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 272
++ VK L+++ DVN G++PLH A Q + DI +LL NGA + + DG T L +
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383
Query: 273 S 273
+
Sbjct: 384 A 384
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQ 214
NA PNL +TA PL + + K G TPLH A + G ++
Sbjct: 103 NANPNLA--TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160
Query: 215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 273
+LL++ + N A G TPLH+A+ N DI K+LL G +G T L ++
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 154 QNATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAM 213
+ A+PN+ + PL + +++ KD TPLH A ++G
Sbjct: 36 RGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93
Query: 214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 273
VKLL++ N + N+A G TPLHIA + + + LL A ++ TK G T L ++
Sbjct: 94 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153
Query: 274 LCYGR 278
YG+
Sbjct: 154 AKYGK 158
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
+K G TPLH Q G + +LIK+ V V+ G+TPLH+A N + K LL +
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Query: 257 ADKSRKTKDGKTALDMSLCYGR 278
AD + KTK G + L + G
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGH 356
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G TPLH A Q G + V LL+ + N+ + G TPLH+ Q + +A VL+ +G
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 260 SRKTKDGKTALDMSLCYG 277
T+ G T L ++ YG
Sbjct: 305 DATTRMGYTPLHVASHYG 322
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
TPLH A +G + VK L++ NV++ + TPLH+A ++ + ++AK LL N A +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 262 KTKDGKTALDMSLCYGRDFKSYDLAKLL 289
K KD +T L C R ++ KLL
Sbjct: 76 KAKDDQTPLH---CAAR-IGHTNMVKLL 99
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
+ PL ++R ++ K+G TPLH AV + VKLL+ +
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
G+TPLHIA + ++A+ LL G + ++ G T L ++ G
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH 257
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G TPLH A + G +++V L++ +G+TPLH+A + +A++LL A
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 260 SRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
+ K+G T L +++ + + D+ KLL
Sbjct: 173 NAAGKNGLTPLHVAVHH----NNLDIVKLL 198
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
+G TPLH A + ++ + L++Y N +G TPLH+A Q + ++ +LL A+
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 259 KSRKTKDGKTALDM 272
+ K G T L +
Sbjct: 271 GNLGNKSGLTPLHL 284
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
+ +G T LH AV G + VK L+++ V+VN AD++GWTPLH A N + K L+ +G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 257 ADKSRKT-KDGKTALD 271
A T D +TA D
Sbjct: 127 AAVFAMTYSDMQTAAD 142
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
G V+ +I D ++ ++EG T LH A+ + + +I K L+ G + + DG T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
+ +G T LH AV G + VK L+++ V+VN AD++GWTPLH A N + K L+ +G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 257 ADKSRKT-KDGKTALD 271
A T D +TA D
Sbjct: 127 AAVFAMTYSDMQTAAD 142
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
G V+ +I D ++ ++EG T LH A+ + + +I K L+ G + + DG T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 271 DMS 273
+
Sbjct: 108 HCA 110
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D+D T LH+A G + V+ L++ V VN D+ GW+PLHIA + +I K LL+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 257 ADKSRKTKDGKTAL 270
A + ++G T L
Sbjct: 97 AHVNAVNQNGCTPL 110
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D+ D AT +H A G ++ V +L+ Y N+ D EG TPLH+A + AK L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 254 INGADKSRKTKDGKTALDMS 273
GA + K+ KT L ++
Sbjct: 193 TQGASIYIENKEEKTPLQVA 212
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D G +PLH A G + VK L+ VN + G TPLH A +IA +L
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 253 LINGADKSRKTKDGKTALDMSLCYG 277
L GA+ K TA+ + G
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKG 150
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
K G T LH A G + +KLLI+ DVN+ D +GWTPLH A + ++L+ N
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 258 DKSRKTKDGKTALDMS 273
D K G+TA D++
Sbjct: 257 DMEAVNKVGQTAFDVA 272
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
I+ + DG T LH A + VK L++ ++N DNEGW PLH A DIA+ L
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 253 LINGADKSRKTKDGKTALDM 272
+ GA +G T LD+
Sbjct: 126 ISQGAHVGAVNSEGDTPLDI 145
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
DGA L A G + V L++ D+N A+ +G T LH A N D+ K L+ NGA+
Sbjct: 40 DGAVFL-AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 259 KSRKTKDGKTALDMSLCYG 277
++ +G L + G
Sbjct: 99 INQPDNEGWIPLHAAASCG 117
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D+D T LH+A G + V+ L++ V VN D+ GW+PLHIA + +I K LL+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 257 ADKSRKTKDGKTAL 270
A + ++G T L
Sbjct: 97 AHVNAVNQNGCTPL 110
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D+ D AT +H A G ++ V +L+ Y N+ D EG TPLH+A + AK L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 254 INGADKSRKTKDGKTALDMS 273
GA + K+ KT L ++
Sbjct: 193 TQGASIYIENKEEKTPLQVA 212
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D G +PLH A G + VK L+ VN + G TPLH A +IA +L
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 253 LINGADKSRKTKDGKTALDMSLCYG 277
L GA+ K TA+ + G
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKG 150
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 153 NQNATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGA 212
N N + G+ ST PL ++R + + DK G PLH A G
Sbjct: 48 NVNCHASDGRKST----PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103
Query: 213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 272
+ +LL+K+ VN D +TPLH A ++ +LL +GAD + GK+A+DM
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
Query: 273 S--------LCYGRDFKSY---------DLAKLLKILPVE 295
+ L Y +FK + DLAK+ K L +E
Sbjct: 164 APTPELRERLTY--EFKGHSLLQAAREADLAKVKKTLALE 201
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 216 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC 275
+ LL NV+ + +D TPLH+A I ++LL +GAD K K G L +
Sbjct: 41 MALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS 100
Query: 276 YGRDFKSYDLAKLL 289
YG Y++ +LL
Sbjct: 101 YGH----YEVTELL 110
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ +KD TPLH A + +++L K+ +N D+ G T LH A + + ++L
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Query: 253 LINGADKSRKTKDGKTALDM 272
L G+D S + G TA M
Sbjct: 300 LSYGSDPSIISLQGFTAAQM 319
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 202 TPLHYAV---QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
T LH AV Q +LL++ +VN + + TPLH+A + + D+ +VL +GA
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 259 KSRKTKDGKTALDMSLCYGR 278
+ G+TAL + G
Sbjct: 273 MNALDSLGQTALHRAALAGH 292
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 58.5 bits (140), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DVN D +G+TPLH+A + + +I +VLL GAD + + K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 267 KTALDMSLCYGRDFKSYDLAKLLK 290
KTA D+S+ G + DLA++L+
Sbjct: 69 KTAFDISIDNGNE----DLAEILQ 88
Score = 52.4 bits (124), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ DKDG TPLH A + G ++ V++L+K DVN D G T I+I + N D+A++L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D+D T LH+A G + V+ L++ V VN D+ GW+PLHIA + +I K LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
A + ++G T L Y +++A +L
Sbjct: 97 AQVNAVNQNGCTPLH----YAASKNRHEIAVML 125
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D+ D AT +H A G ++ + +L+ Y N+ D EG TPLH+A + AK+L+
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 192
Query: 254 INGADKSRKTKDGKTALDMS 273
GA + K+ KT L ++
Sbjct: 193 SQGASIYIENKEEKTPLQVA 212
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D G +PLH A G + VK L+ VN + G TPLH A +IA +L
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 253 LINGADKSRKTKDGKTALDMSLCYG 277
L GA+ K TA+ + G
Sbjct: 126 LEGGANPDAKDHYEATAMHRAAAKG 150
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D+D T LH+A G + V+ L++ V VN D+ GW+PLHIA + +I K LL G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
A + ++G T L Y +++A +L
Sbjct: 98 AQVNAVNQNGCTPLH----YAASKNRHEIAVML 126
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D+ D AT +H A G ++ + +L+ Y N+ D EG TPLH+A + AK+L+
Sbjct: 134 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 193
Query: 254 INGADKSRKTKDGKTALDMS 273
GA + K+ KT L ++
Sbjct: 194 SQGASIYIENKEEKTPLQVA 213
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D G +PLH A G + VK L+ VN + G TPLH A +IA +L
Sbjct: 67 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 126
Query: 253 LINGADKSRKTKDGKTALDMSLCYG 277
L GA+ K TA+ + G
Sbjct: 127 LEGGANPDAKDHYEATAMHRAAAKG 151
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D G +P+H A + G + ++K+L+++ DVNV D G P+H+A+Q + + L
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 129
Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
+D R+ G T L+++L G + DL +L+
Sbjct: 130 SDLHRRDARGLTPLELALQRG----AQDLVDILQ 159
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D++++ G T L + G+ L+K NV D G +P+H A ++ D KVL+
Sbjct: 36 DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 94
Query: 254 INGADKSRKTKDGKTALDMSLC 275
+GAD + DG AL + L
Sbjct: 95 EHGADVN--VPDGTGALPIHLA 114
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D G +P+H A + G + ++K+L+++ DVNV D G P+H+A+Q + + L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123
Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
+D R+ G T L+++L G + DL +L+
Sbjct: 124 SDLHRRDARGLTPLELALQRG----AQDLVDILQ 153
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D++++ G T L + G+ L+K NV D G +P+H A ++ D KVL+
Sbjct: 30 DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 88
Query: 254 INGADKSRKTKDGKTALDMSLC 275
+GAD + DG AL + L
Sbjct: 89 EHGADVN--VPDGTGALPIHLA 108
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D D+ G +H A + G + +++ L+++ DVN+ DNEG PLH+A + + + + L+
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 INGADK-SRKTKDGKTALDMSLCYGRD 279
+ A + G TA D++ YGR+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRN 150
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
TPLH A G V++L+K+ DVN D T LH A + ++++ ++L+ GAD
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Query: 262 KTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
++K KTA D+S+ G + DLA++L+
Sbjct: 129 QSKFCKTAFDISIDNGNE----DLAEILQ 153
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G +PLH A Q G + ++L++ V + TPLH+A + +I +VLL +GAD
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 260 SRKTKDGKTAL 270
+ K TAL
Sbjct: 94 NAKDMLKMTAL 104
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 233 GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS------------LCYGRDF 280
G +PLH+A Q + +VLL G + +TK +T L M+ L +G D
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 281 KSYDLAKL 288
+ D+ K+
Sbjct: 94 NAKDMLKM 101
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D D+ G +H A + G + +++ L+++ DVN+ DNEG PLH+A + + + + L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 INGADK-SRKTKDGKTALDMSLCYGRD 279
+ A + G TA D++ YGR+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRN 150
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D D+ G +H A + G + +++ L+++ DVN+ DNEG PLH+A + + + + L+
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 INGADK-SRKTKDGKTALDMSLCYGRD 279
+ A + G TA D++ YGR+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRN 150
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D D+ G +H A + G + +++ L+++ DVN+ DNEG PLH+A + + + + L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 INGADK-SRKTKDGKTALDMSLCYGRD 279
+ A + G TA D++ YGR+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRN 150
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G PLHYA G ++ ++ L+ D+N D TPL A+ + K+LL GADK
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 260 SRKTKDGKTALDMS 273
+ K DG TAL+ +
Sbjct: 95 TVKGPDGLTALEAT 108
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 206 YAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
+A++ G + VK + DVN G PLH A +I + LL+ GAD
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 60
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 169 RPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 228
+PL Q+ I++ DK TPL AV G + VKLL+ D V
Sbjct: 37 KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Query: 229 ADNEGWTPLHIAIQSRNRDIAKVLL 253
+G T A+++ + K LL
Sbjct: 97 KGPDGLT----ALEATDNQAIKALL 117
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G PLHYA G ++ ++ L+ D+N D TPL A+ + K+LL GADK
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 260 SRKTKDGKTALDMS 273
+ K DG TA + +
Sbjct: 100 TVKGPDGLTAFEAT 113
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 206 YAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
+A++ G + VK + DVN G PLH A +I + LL+ GAD
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 169 RPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 228
+PL Q+ I++ DK TPL AV G + VKLL+ D V
Sbjct: 42 KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Query: 229 ADNEGWTPLHIAIQSRNRDIAKVLL 253
+G T A ++ + K LL
Sbjct: 102 KGPDGLT----AFEATDNQAIKALL 122
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DV D G TPLH+A ++ + ++ K+LL GAD + + K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 267 KTALDMSLCYGRDFKSYDLAKLLK 290
KTA D+S+ G + DLA++L+
Sbjct: 73 KTAFDISIDNGNE----DLAEILQ 92
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
DK+G+TPLH A + G ++ VKLL++ DVN D G T I+I + N D+A++L
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A + G V++L+ DV D G TPLH+A ++ + ++ K+LL GAD + K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 267 KTALDMSLCYGRDFKSYDLAKLLK 290
KTA D+S+ G + DLA++L+
Sbjct: 91 KTAFDISIDNGNE----DLAEILQ 110
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
DK+G+TPLH A + G ++ VKLL++ DV D G T I+I + N D+A++L
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D D+ G +H A + G + +++ L++ DVN+ DNEG PLH+A + + + + L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 INGADK-SRKTKDGKTALDMSLCYGRD 279
+ A + G TA D++ YGR+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRN 150
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D G +PLH+A + G V++LI +NV + TPLH+A +RDI + L
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 285
L AD + + G L + +G+D + DL
Sbjct: 92 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
I+ +++ TPLH A G V+ L++Y D+N + G PLH A +A+ L
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 253 LINGADKSRKTKDGKTALD 271
+ NGA S K G+ +D
Sbjct: 125 VANGALVSICNKYGEMPVD 143
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 225 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 277
D+N D+ G++PLH A + + ++L++ GA + + T L ++ +G
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D G TPL YA G + V LL+++ +N ++N+G T LH A+ ++ + ++LL++G
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208
Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP 293
A K +TA+D C ++ K + +LL+++P
Sbjct: 209 ASVQVLNKRQRTAVD---CAEQNSK---IMELLQVVP 239
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
+ D A PLH A Q G Q VK L+ N N D G TPL A + ++ +LL +G
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Query: 257 ADKSRKTKDGKTAL 270
A + G TAL
Sbjct: 176 ASINASNNKGNTAL 189
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ +DG++PLH A G + LL+K+ + + + PLH+A Q + + K L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 253 LINGADKSRKTKDGKTALDMSLCYG 277
L + A ++K G T L + C G
Sbjct: 139 LDSNAKPNKKDLSGNTPL-IYACSG 162
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D G +PLH+A + G V++LI +NV + TPLH+A +RDI + L
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 86
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 285
L AD + + G L + +G+D + DL
Sbjct: 87 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
I+ +++ TPLH A G V+ L++Y D+N + G PLH A +A+ L
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119
Query: 253 LINGADKSRKTKDGKTALD 271
+ NGA S K G+ +D
Sbjct: 120 VANGALVSICNKYGEMPVD 138
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 225 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
D+N D+ G++PLH A + + ++L++ GA + + T L ++ +G
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 79
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
D+ GAT LH A + K L++ + D N+ DN G TPLH A+ + + + ++L+ N
Sbjct: 53 TDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Query: 256 GA-DKSRKTKDGKTAL 270
A D + DG T L
Sbjct: 113 RATDLDARMHDGTTPL 128
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+D+ DG TPL A ++ ++ LI + DVN D+ G + LH A N D A VL
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
L NGA+K + +T L ++ G SY+ AK+L
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREG----SYETAKVL 209
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
D G TPLH AV A ++LI+ D++ ++G TPL +A + + + L+ +
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 256 GADKSRKTKDGKTAL 270
AD + GK+AL
Sbjct: 147 HADVNAVDDLGKSAL 161
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++VD G + LH+A V + + +L+K + ++ +N TPL +A + + + AKVL
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Query: 253 LINGADK 259
L + A++
Sbjct: 210 LDHFANR 216
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKV 251
+++ + DG TPLH AV + V+LL D+N + G TPLH+A++++ + ++
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 252 LLINGADKSRKTKDGKTALDMSL 274
LL GAD + + G+T L +L
Sbjct: 211 LLKAGADPTARMYGGRTPLGSAL 233
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G TPLH AV+ A ++LL+K D G TPL A+ N +A++L +GA +
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
Query: 260 SRKTKD 265
D
Sbjct: 252 PEDGGD 257
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G T LH A +G +V+ L V VA+ G T LH+A + R A VLL
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 260 SRKTKD 265
R D
Sbjct: 105 PRDASD 110
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKV 251
+++ + DG TPLH AV + V+LL D+N + G TPLH+A++++ + ++
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 252 LLINGADKSRKTKDGKTALDMSL 274
LL GAD + + G+T L +L
Sbjct: 211 LLKAGADPTARMYGGRTPLGSAL 233
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G TPLH AV+ A ++LL+K D G TPL A+ N +A++L +GA +
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
Query: 260 SRKTKD 265
D
Sbjct: 252 PEDGGD 257
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
G T LH A +G +V+ L V VA+ G T LH+A + R A VLL
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 260 SRKTKD 265
R D
Sbjct: 105 PRDASD 110
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 156 ATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQS 215
A N+ S + PL + + +D D +G+T LH A + G +
Sbjct: 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92
Query: 216 VK-LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
V+ LL +DVN D+ GWTP+ A + ++ D+ K+LL G+D
Sbjct: 93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 167 KWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDV 226
K PL + + ID+ +D TPL A + +++VK LIK V
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 227 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLA 286
+ D EG T LH+A + + ++ + LL NG DG + + ++K DL
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT---PMIWATEYKHVDLV 127
Query: 287 KLL 289
KLL
Sbjct: 128 KLL 130
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D G TP+ +A + + VKLL+ D+N+ DNE LH A S DIA++L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 253 LINGADKSRKTKDGKTALDMS 273
L D G + L ++
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIA 184
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 53/123 (43%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
W P+ T + I+ D + LH+A G + ++L+ D++
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
+ G +PLHIA + D + L +D + K K+G+T L + + + + ++K
Sbjct: 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231
Query: 288 LLK 290
L+
Sbjct: 232 ALQ 234
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
D+ G T LH A + + K L++ + D N+ DN G TPLH A+ + + + ++L+ N
Sbjct: 53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Query: 256 GA-DKSRKTKDGKTAL 270
A D + DG T L
Sbjct: 113 RATDLDARMHDGTTPL 128
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+D+ DG TPL A ++ ++ LI + DVN D+ G + LH A N D A VL
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
L NGA+K + +T L ++ G SY+ AK+L
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREG----SYETAKVL 209
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
D G TPLH AV A ++LI+ D++ ++G TPL +A + + + L+ +
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 256 GADKSRKTKDGKTAL 270
AD + GK+AL
Sbjct: 147 HADVNAVDDLGKSAL 161
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++VD G + LH+A V + + +L+K + ++ +N TPL +A + + + AKVL
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Query: 253 LINGADK 259
L + A++
Sbjct: 210 LDHFANR 216
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
D+ G T LH A + + K L++ + D N+ DN G TPLH A+ + + + ++L+ N
Sbjct: 54 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 113
Query: 256 GA-DKSRKTKDGKTAL 270
A D + DG T L
Sbjct: 114 RATDLDARMHDGTTPL 129
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+D+ DG TPL A ++ ++ LI + DVN D+ G + LH A N D A VL
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
L NGA+K + +T L ++ G SY+ AK+L
Sbjct: 178 LKNGANKDMQNNREETPLFLAAREG----SYETAKVL 210
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
D G TPLH AV A ++LI+ D++ ++G TPL +A + + + L+ +
Sbjct: 88 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 147
Query: 256 GADKSRKTKDGKTAL 270
AD + GK+AL
Sbjct: 148 HADVNAVDDLGKSAL 162
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++VD G + LH+A V + + +L+K + ++ +N TPL +A + + + AKVL
Sbjct: 151 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 210
Query: 253 LINGADK 259
L + A++
Sbjct: 211 LDHFANR 217
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
D+ G T LH A + + K L++ + D N+ DN G TPLH A+ + + + ++L+ N
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 256 GA-DKSRKTKDGKTAL 270
A D + DG T L
Sbjct: 81 RATDLDARMHDGTTPL 96
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+D+ DG TPL A ++ ++ LI + DVN D+ G + LH A N D A VL
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
L NGA+K + +T L ++ G SY+ AK+L
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREG----SYETAKVL 177
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
D G TPLH AV A ++LI+ D++ ++G TPL +A + + + L+ +
Sbjct: 55 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114
Query: 256 GADKSRKTKDGKTAL 270
AD + GK+AL
Sbjct: 115 HADVNAVDDLGKSAL 129
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++VD G + LH+A V + + +L+K + ++ +N TPL +A + + + AKVL
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177
Query: 253 LINGADK 259
L + A++
Sbjct: 178 LDHFANR 184
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D G +P+H A + G + ++K+L+++ DVN D+ G P+H+AI+ + + L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 131
Query: 257 ADKSRKTKDGKTALDMS 273
+D + G T L+++
Sbjct: 132 SDLHHRDASGLTPLELA 148
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D++++ G T L + G+ L+K NV D G +P+H A ++ D KVL+
Sbjct: 38 DALNRFGKTALQV-MMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 96
Query: 254 INGADKSRKTKDGKTALDMSLCYGR 278
+GAD + G + +++ G
Sbjct: 97 EHGADVNALDSTGSLPIHLAIREGH 121
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D G +P+H A + G + ++K+L+++ DVN D+ G P+H+AI+ + + L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 129
Query: 257 ADKSRKTKDGKTALDMS 273
+D + G T L+++
Sbjct: 130 SDLHHRDASGLTPLELA 146
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
D++++ G T L + G+ L+K NV D G +P+H A ++ D KVL+
Sbjct: 36 DALNRFGKTALQV-MMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 94
Query: 254 INGADKSRKTKDGKTALDMSLCYGR 278
+GAD + G + +++ G
Sbjct: 95 EHGADVNALDSTGSLPIHLAIREGH 119
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
+ L A G VK+L+ VDVN D G TPL A+ + K+LL +GAD +
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 146
Query: 262 KTKDGKTALDMSLCYG-RDFKSYDLAKLLKIL 292
+T G ++D+++ G R + + LLK+L
Sbjct: 147 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 178
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D +G TPL YAV ++ VK+L++ D + + G+ + +A+ R + +V+
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 200 GATPL--HYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
GA L H G M + I+ +N D EG+TPL A + + LL NGA
Sbjct: 17 GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 76
Query: 258 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
D K ++AL ++ G D+ K+L
Sbjct: 77 DPQLLGKGRESALSLACSKGYT----DIVKML 104
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
+ L A G VK+L+ VDVN D G TPL A+ + K+LL +GAD +
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130
Query: 262 KTKDGKTALDMSLCYG-RDFKSYDLAKLLKIL 292
+T G ++D+++ G R + + LLK+L
Sbjct: 131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D +G TPL YAV ++ VK+L++ D + + G+ + +A+ R + +V+
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 226 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 285
+N D EG+TPL A + + LL NGAD K ++AL ++ G D+
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT----DI 84
Query: 286 AKLL 289
K+L
Sbjct: 85 VKML 88
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
+ L A G VK+L+ VDVN D G TPL A+ + K+LL +GAD +
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 128
Query: 262 KTKDGKTALDMSLCYG-RDFKSYDLAKLLKIL 292
+T G ++D+++ G R + + LLK+L
Sbjct: 129 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 160
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D +G TPL YAV ++ VK+L++ D + + G+ + +A+ R + +V+
Sbjct: 93 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 226 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 285
+N D EG+TPL A + + LL NGAD K ++AL ++ G D+
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT----DI 82
Query: 286 AKLL 289
K+L
Sbjct: 83 VKML 86
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKV 251
+ + + +G T LH A G + V+LL+ DVN + G T LH+A+ +N D+ +
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 252 LLINGADKSRKTKDGKTALDMSLCYGR 278
LL GAD +R T G + ++ +GR
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLT--WGR 194
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIK------YNVDVNVADNEGWTPLHIAIQSRNRDIAK 250
D G TPLH A + G + SV +L + + + + G T LH+A I +
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 251 VLLINGAD-KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
+L+ GAD +++ +G+TAL +++ D ++ DL LL
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAV----DLQNPDLVSLL 170
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 198 KDGATPLHYAV----QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
+DG + LH A+ + M+ ++ + +N +N TPLH+A+ + +IA+ LL
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 254 INGADKSRKTKDGKTALDMS 273
G D + G T L ++
Sbjct: 66 GAGCDPELRDFRGNTPLHLA 85
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
TPLH AV + + L+ D + D G TPLH+A +
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKV 251
+ + + +G T LH A G + V+LL+ DVN + G T LH+A+ +N D+ +
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 252 LLINGADKSRKTKDGKTALDMSLCYGR 278
LL GAD +R T G + ++ +GR
Sbjct: 167 LLKCGADVNRVTYQGYSPYQLT--WGR 191
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIK------YNVDVNVADNEGWTPLHIAIQSRNRDIAK 250
D G TPLH A + G + SV +L + + + + G T LH+A I +
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 131
Query: 251 VLLINGAD-KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
+L+ GAD +++ +G+TAL +++ D ++ DL LL
Sbjct: 132 LLVSLGADVNAQEPCNGRTALHLAV----DLQNPDLVSLL 167
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 196 VDKDGATPLHYAV----QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKV 251
+ +DG + LH A+ + M+ ++ + +N +N TPLH+A+ + +IA+
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 252 LLINGADKSRKTKDGKTALDMS 273
LL G D + G T L ++
Sbjct: 61 LLGAGCDPELRDFRGNTPLHLA 82
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
TPLH AV + + L+ D + D G TPLH+A +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 84
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
+++G T LH A+ V LI +VN D+ GWTPLH A + I L+ +G
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 257 ADKSRKT-KDGKTALD 271
A T DG TA +
Sbjct: 111 AAIFATTLSDGATAFE 126
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
A G ++ V+ +K D + + EG T LH AI N I L+ GA+ + G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 267 KTALDMS 273
T L +
Sbjct: 88 WTPLHCA 94
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
D+ G T LH A + + K L++ + D + DN G TPLH A+ + + + ++LL N
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN 77
Query: 256 GA-DKSRKTKDGKTAL 270
A D + DG T L
Sbjct: 78 RATDLDARMHDGTTPL 93
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+D+ DG TPL A ++ ++ LI + DVN D+ G + LH A N D A VL
Sbjct: 82 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
L NGA+K + +T L ++ G SY+ AK+L
Sbjct: 142 LKNGANKDMQNNKEETPLFLAAREG----SYETAKVL 174
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 41/67 (61%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++VD G + LH+A V + + +L+K + ++ +N+ TPL +A + + + AKVL
Sbjct: 115 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 174
Query: 253 LINGADK 259
L + A++
Sbjct: 175 LDHFANR 181
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
D G TPLH AV A ++L++ D++ ++G TPL +A + + + L+ +
Sbjct: 52 DNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINS 111
Query: 256 GADKSRKTKDGKTAL 270
AD + GK+AL
Sbjct: 112 HADVNAVDDLGKSAL 126
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 201 ATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 260
+TPLH+A + G + V L+KY D ++ D EG + +H+A Q + I L+ G D
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 261 RKTKDGKTAL 270
++G T L
Sbjct: 137 MMDQNGMTPL 146
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 193 IDSVDKDGATPLHYAV-QVGAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAK 250
+D +D++G TPL +A + ++ +LL+ +NV VN+ D T LH A+ + N +
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 251 VLLINGADKSRKTKDGKTALDMS 273
+LL GA+ + G++ALD++
Sbjct: 195 LLLEAGANVDAQNIKGESALDLA 217
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVN-VADNEGWTPLHIAIQSRNRDIAKVLLIN 255
DK+ T LH+A + VK I V+ + + TPLH A + + + L+
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 256 GADKSRKTKDGKTALDMSLCYGR-DFKSYDLAK 287
GAD S +G + + ++ +G +Y +AK
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNV---ADNEGWTPLHIAIQSRNRDIAKVLL 253
D+DG PLH++V A + L+ +VN+ D+ GWTP HIA N ++ K L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 254 IN--GADKSRKTKDGKTALDMSL 274
D ++ T G T L +++
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAV 115
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNV--DVNVADNEGWTPLHIAIQSRNRDIAKV 251
D D G TP H A VG ++ VK L + D+N N+G T LH+A+ + ++++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 252 LLINGADKSRKTKDGKTALDMSLCYG 277
L+ NGA K K + L + G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVG 151
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
DK PLH A VG+++ ++LL VN D +GWTPL A+ + D A VLL+
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVE 195
Query: 256 --GADKSRKTKDGKTALDMSL 274
GA+ G A D++L
Sbjct: 196 KYGAEYDLVDNKGAKAEDVAL 216
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNV---ADNEGWTPLHIAIQSRNRDIAKVLL 253
D+DG PLH++V A + L+ +VN+ D+ GWTP HIA N ++ K L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 254 IN--GADKSRKTKDGKTALDMSL 274
D ++ T G T L +++
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAV 115
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNV--DVNVADNEGWTPLHIAIQSRNRDIAKV 251
D D G TP H A VG ++ VK L + D+N N+G T LH+A+ + ++++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 252 LLINGADKSRKTKDGKTALDMSLCYG 277
L+ NGA K K + L + G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVG 151
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
DK PLH A VG+++ ++LL VN D +GWTPL A+ + D A VLL+
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVE 195
Query: 256 --GADKSRKTKDGKTALDMSL 274
GA+ G A D++L
Sbjct: 196 KYGAEYDLVDNKGAKAEDVAL 216
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNV---ADNEGWTPLHIAIQSRNRDIAKVLL 253
D+DG PLH++V A + L+ +VN+ D+ GWTP HIA N ++ K L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 254 IN--GADKSRKTKDGKTALDMSL 274
D ++ T G T L +++
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAV 115
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNV--DVNVADNEGWTPLHIAIQSRNRDIAKV 251
D D G TP H A VG ++ VK L + D+N N+G T LH+A+ + ++++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 252 LLINGADKSRKTKDGKTALDMSLCYG 277
L+ NGA K K + L + G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVG 151
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
DK PLH A VG+++ ++LL VN D +GWTPL A+ + D A VLL+
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVE 195
Query: 256 --GADKSRKTKDGKTALDMSL 274
GA+ G A D++L
Sbjct: 196 KYGAEYDLVDNKGAKAEDVAL 216
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
K+ + L A G V LL++ +VD+N+ D G TPL A++ + + LL GA
Sbjct: 67 KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126
Query: 258 DKSRKTKDGKTALDMSLCYG 277
D + + G T +D+++ G
Sbjct: 127 DLTTEADSGYTPMDLAVALG 146
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
I+ D +G TPL YAV+ ++ V+ L+ D+ + G+TP+ +A+ R + +V+
Sbjct: 95 INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
DG TPL A ++ V+ LI + D+N ADN G T LH A N + +LL++ A
Sbjct: 116 HDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA 175
Query: 258 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
++ + +T L ++ G SY+ +K L
Sbjct: 176 NRDAQDDKDETPLFLAAREG----SYEASKAL 203
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 195 SVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 254
++DK G T LH A + + K L+ D N DN G TPLH A+ + + ++LL
Sbjct: 46 TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLR 105
Query: 255 NGA-DKSRKTKDGKTAL 270
N A + + + DG T L
Sbjct: 106 NRATNLNARMHDGTTPL 122
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
I++ D G T LH+A V ++V +L+ ++ + + D++ TPL +A + + + +K L
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 203
Query: 253 LINGADK 259
L N A++
Sbjct: 204 LDNFANR 210
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+S D G TPLH AV AM ++L++ ++N ++G TPL +A + + + L
Sbjct: 78 NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 253 LINGADKSRKTKDGKTAL 270
+ AD + GKTAL
Sbjct: 138 ITADADINAADNSGKTAL 155
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
K+ + L A G V LL++ +VD+N+ D G TPL A+ + + LL GA
Sbjct: 67 KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGA 126
Query: 258 DKSRKTKDGKTALDMSLCYG 277
D + + G T +D+++ G
Sbjct: 127 DLTTEADSGYTPMDLAVALG 146
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
I+ D +G TPL YAV ++ V+ L+ D+ + G+TP+ +A+ R + +V+
Sbjct: 95 INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D G PLH+A +G L +K D+ D+EG PL IA+++ N DI +L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
+D ATPL A ++ + + L++ +VN AD+ G PLH A + +A + L GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 258 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI 291
D + +G+ L +++ + + D+ LL++
Sbjct: 293 DLGARDSEGRDPLTIAM----ETANADIVTLLRL 322
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D G PLH+A +G L +K D+ D+EG PL IA+++ N DI +L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
+D ATPL A ++ + + L++ +VN AD+ G PLH A + +A + L GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 258 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI 291
D + +G+ L +++ + + D+ LL++
Sbjct: 293 DLGARDSEGRDPLTIAM----ETANADIVTLLRL 322
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ D G PLH+A +G L +K D+ D+EG PL IA+++ N DI +L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
+D ATPL A ++ + + L++ +VN AD+ G PLH A + +A + L GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 258 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI 291
D + +G+ L +++ + + D+ LL++
Sbjct: 293 DLGARDSEGRDPLTIAM----ETANADIVTLLRL 322
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D G TPLH A G ++ V+LL+++ VN + +PLH A ++ + DI K+LL G
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 257 ADKS 260
A ++
Sbjct: 100 ASRN 103
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
G T LH A G + SV+ L++ D NV D+ GWTPLH A + + ++LL
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 166 AKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVD 225
A W PL ++ +++ +PLH A + G + VKLL+ Y
Sbjct: 42 AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Query: 226 VNVADNEGWTPL 237
N + G P+
Sbjct: 102 RNAVNIFGLRPV 113
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++ D G TPL +++ G + L+++ +VN + EG TPL +A + +I K L
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
L GAD S + G TA + +GR
Sbjct: 154 LELGADISARDLTGLTAEASARIFGR 179
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D +G+T L +AV+ + + L+ +VN D G TPL +I +++ LL +G
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 257 ADKSRKTKDGKTALDMSLCYGR 278
A+ + + +G+T L ++ YGR
Sbjct: 125 ANVNDRNLEGETPLIVASKYGR 146
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
+ D A+P+H A + G ++ V LI Y +++ + TPL++A +++ R K LL +G
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 257 ADKSR-KTKD------GKTALDMSLCYGRDFKSYDLAK 287
AD ++ K +D +TA + C DF + AK
Sbjct: 158 ADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAK 195
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
++ + D +PLH A G + VK+L+K+ VN + TPL A S + D +L
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88
Query: 253 LINGA 257
L +GA
Sbjct: 89 LQHGA 93
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 201 ATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 260
TPL+ A + VK L++ DVN + +PLH ++ + ++A +L+ GAD
Sbjct: 135 GTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTASEELACLLMDFGADTQ 193
Query: 261 RKTKDGKTALDM 272
K +GK +++
Sbjct: 194 AKNAEGKRPVEL 205
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
+P+H A G S++ LI VN+ + +PLH A + K+LL +GA +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 262 KTKDGKTALDMSLCYGRDFKSYDLAKLL 289
T D T L + G S+D LL
Sbjct: 65 VTADWHTPLFNACVSG----SWDCVNLL 88
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKY----NVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
D+DG TPLH AV G + +V L+ ++++ +N TPLH+A+ + + ++L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
+ GA + G+TA ++ C R
Sbjct: 66 VTAGASPMALDRHGQTAAHLA-CEHR 90
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKV 251
+++ + DG T LH AV ++V+LL++ D++ D G +PL A+++ + + ++
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 252 LLINGADKSRKTKDGKTAL 270
LL +GA+ + + G +AL
Sbjct: 169 LLQHGANVNAQMYSGSSAL 187
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 193 IDSVD-KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKV 251
ID+VD K G +PL +AV+ ++ V+LL+++ +VN G + LH A + +
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRT 201
Query: 252 LLINGADKSRKTKDGKTAL 270
L+ +GAD S K T L
Sbjct: 202 LVRSGADSSLKNCHNDTPL 220
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA---- 257
TPLH AV V+LL+ D G T H+A + R+ + LL + A
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 258 DKSRKTKDGKTALDMSL 274
D + DG TAL +++
Sbjct: 108 DLEARNYDGLTALHVAV 124
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 195 SVDKDGATPLHYAVQVGAMQSVKLLIKY----NVDVNVADNEGWTPLHIAIQSRNRDIAK 250
++D+ G T H A + + ++ L+ +D+ + +G T LH+A+ + ++ +
Sbjct: 74 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133
Query: 251 VLLINGAD-KSRKTKDGKTAL 270
+LL GAD + K G++ L
Sbjct: 134 LLLERGADIDAVDIKSGRSPL 154
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKV 251
+D+VD++G T L + +G+ + V+LL + D++ D G T LH+A ++ +
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 252 LLINGADKSRKTKDGKTALDMS 273
L+ GAD + + G TAL+++
Sbjct: 129 LVELGADIEVEDERGLTALELA 150
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
+ D A+P+H A + G ++ V LI Y +++ + TPL++A +++ R K LL +G
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 257 ADKSR-KTKDG------KTALDMSLCYGRDFKSYDLAK 287
AD ++ K +D +TA + C DF + AK
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%)
Query: 164 STAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN 223
+ + W P+ + ++ + D +PLH A G + VK+L+K+
Sbjct: 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115
Query: 224 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
VN + TPL A S + D +LL +GA
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 149
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 201 ATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 260
TPL+ A + VK L++ DVN + +PLH +++ + ++A +L+ GAD
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQ 249
Query: 261 RKTKDGKTALDM 272
K +GK +++
Sbjct: 250 AKNAEGKRPVEL 261
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
+P+H A G S++ LI VN+ + +PLH A + K+LL +GA +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 262 KTKDGKTALDMSLCYGRDFKSYDLAKLL 289
T D T L + G S+D LL
Sbjct: 121 VTADWHTPLFNACVSG----SWDCVNLL 144
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 200 GATPLHYAVQVGAMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQSRN-----RDIAKVLL 253
G L A + G + +VKLL++ D++ ++ G+T L A+ R +DI K+L+
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 254 INGADKSRKTKDGKTALDMS 273
NGAD+S K G+TA+D +
Sbjct: 166 ENGADQSIKDNSGRTAMDYA 185
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTP-LHIAIQSRNRDIAKV 251
+D VD +G TPL+ AV ++ K LI D+N+ ++ +P L+ Q R +A +
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 252 LLINGADKSRKTKDGKTAL 270
L D ++ + G AL
Sbjct: 92 LKHATPDLNKHNRYGGNAL 110
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 216 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
VKLL++ D ++ DN G T + A Q +I+K+L
Sbjct: 161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKV 251
+D+VD++G T L + +G+ + V+LL + D++ D G T LH+A ++ +
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 252 LLINGADKSRKTKDGKTALDMS 273
L+ GAD + + G TAL+++
Sbjct: 130 LVELGADIEVEDERGLTALELA 151
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 249
G PL +A VG+ + V+LLI++ D+ D+ G T LHI I N+ A
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 232 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD-------------GKTALDMSLCYGR 278
EG T LHIA+ ++N ++ + LL GA S + G+ L + C G
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 279 D 279
+
Sbjct: 134 E 134
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
++ G TPLH AVQ+ V+LL+++ D + G TP +A + + + K+ L G
Sbjct: 56 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKG 115
Query: 257 ADKSRKTKDGKTALDMSLCYGR 278
AD + G TA + YG+
Sbjct: 116 ADVNECDFYGFTAFMEAAVYGK 137
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPL-HIAIQSRNRD---IAKVL 252
K GAT L A + G ++ +K+L+ + DVN DN G L H + S + D I +L
Sbjct: 166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 225
Query: 253 LINGADKSRKTKDGKTALDMSL 274
L +GAD + + + GKT L +++
Sbjct: 226 LDHGADVNVRGERGKTPLILAV 247
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
K+GATP A G+++ +KL + DVN D G+T A K L GA
Sbjct: 90 KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 149
Query: 258 ----------DKSRKTKDGKTAL 270
D+ R K G TAL
Sbjct: 150 NVNLRRKTKEDQERLRKGGATAL 172
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 15/78 (19%)
Query: 218 LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL------INGADKSRKTKDGKTALD 271
LL+ + DVNV G TPL +A++ ++ + + LL IN D DGKTAL
Sbjct: 224 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD-----SDGKTALL 278
Query: 272 MSLCYGRDFKSYDLAKLL 289
+++ + K +A+LL
Sbjct: 279 LAV----ELKLKKIAELL 292
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
++ G TPLH AVQ+ V+LL+++ D + G TP +A + + + K+ L G
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95
Query: 257 ADKSRKTKDGKTALDMSLCYGR 278
AD + G TA + YG+
Sbjct: 96 ADVNECDFYGFTAFMEAAVYGK 117
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPL-HIAIQSRNRD---IAKVL 252
K GAT L A + G ++ +K+L+ + DVN DN G L H + S + D I +L
Sbjct: 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205
Query: 253 LINGADKSRKTKDGKTALDMSL 274
L +GAD + + + GKT L +++
Sbjct: 206 LDHGADVNVRGERGKTPLILAV 227
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
K+GATP A G+++ +KL + DVN D G+T A K L GA
Sbjct: 70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
Query: 258 ----------DKSRKTKDGKTAL 270
D+ R K G TAL
Sbjct: 130 NVNLRRKTKEDQERLRKGGATAL 152
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 15/78 (19%)
Query: 218 LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL------INGADKSRKTKDGKTALD 271
LL+ + DVNV G TPL +A++ ++ + + LL IN D DGKTAL
Sbjct: 204 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD-----SDGKTALL 258
Query: 272 MSLCYGRDFKSYDLAKLL 289
+++ + K +A+LL
Sbjct: 259 LAV----ELKLKKIAELL 272
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+D+ DG TPL A ++ ++ LI + DVN D+ G + LH A N D A VL
Sbjct: 8 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 67
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
L NGA+K + +T L ++ G SY+ AK+L
Sbjct: 68 LKNGANKDMQNNKEETPLFLAAREG----SYETAKVL 100
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 41/67 (61%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+++VD G + LH+A V + + +L+K + ++ +N+ TPL +A + + + AKVL
Sbjct: 41 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 100
Query: 253 LINGADK 259
L + A++
Sbjct: 101 LDHFANR 107
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVK-LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKV 251
++ +DK G+T L++A G V+ L + N+++N + G T LH A DI ++
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 252 LLINGADKSRKTKDGKTALDMS 273
LL GA + + K A D +
Sbjct: 159 LLAKGARTDLRNIEKKLAFDXA 180
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+D G+T LHY + +KLL++ + +A+ G TPL IA + ++ ++L
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 202 TPLHYAVQV---GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
T LH AV+ ++ V L++ + +++ +G T LH + N + K+LL A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 259 KSRKTKDGKTALDMS 273
+ G+T LD++
Sbjct: 231 IEIANESGETPLDIA 245
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+D +K G + LH+A+ + ++ +DVN DNE PL++++++ + K L
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKEL 263
Query: 253 L 253
L
Sbjct: 264 L 264
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 200 GATPLHYAVQVGA--MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD 247
G T LH+ V +G ++ +K+L++ D TPL A + RNR+
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNRE 187
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
D + +H A + G V+ LI+ V + + G T LH+A + D AK L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 272
+ K I DVN D + TPL +A+ +R R + L GAD + K ++AL
Sbjct: 146 VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQ 205
Query: 273 SLCYGRDF 280
+ RDF
Sbjct: 206 AAA-NRDF 212
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
DS G T LHYA QV VK L+ + + + D +G TP+ +A Q ++ L
Sbjct: 273 DSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 253 LINGA 257
+ GA
Sbjct: 333 IQQGA 337
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
D D+DG TP+ A Q G ++ V LI+ V D T +A + + +I +
Sbjct: 307 DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR 246
VD+ G TPLH+ + ++ VK L+K+ + DN G + L A++S N
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+D+ DG T LHYA +KLL+K V + G T L IA + +++ ++L
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 204 LHYAVQVGAMQSVKL---LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 260
LH AV+V S+ L +I+ ++ +G T LH A D K+LL A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 261 RKTKDGKTALDMS 273
+ G+TALD++
Sbjct: 254 TVNEAGETALDIA 266
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
+D+ DG T LHYA +KLL+K V + G T L IA + +++ ++L
Sbjct: 200 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 204 LHYAVQVGAMQSVKL---LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 260
LH AV+V S+ L +I+ ++ +G T LH A D K+LL A
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 261 RKTKDGKTALDMS 273
+ G+TALD++
Sbjct: 235 TVNEAGETALDIA 247
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
D G + +YA+ ++ V L+ N+ +NE PLH A + I K+LL +G
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSG 85
Query: 257 ADKSRKTKDGKTAL 270
D S+ G TAL
Sbjct: 86 LDDSQFDDKGNTAL 99
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGW-TPLHIAIQSRNRDIAKVLL 253
D G T L+YAV G Q+VKL +K N + GW T + A+ + I L
Sbjct: 92 DDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFL 149
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 203 PLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
PLH A + + VK+L+ +D + D++G T L+ A+ S N K+ +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFV 115
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 232 EGWTPLHIAIQSRNRDIAKVLLINGAD 258
+G T LHIAI+ RN + +L+ NGAD
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGAD 126
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE--------------GWTPLHIAIQSRN 245
G T LH A++ V LL++ DV A N G PL +A +
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 246 RDIAKVLLING---ADKSRKTKDGKTAL 270
I K LL N AD S + G T L
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVL 188
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNV-DVNVADNEGWTPL---HIAIQSRNRDI 248
++ D +G T LHY+V V+ L+ V V+ + G++P+ +A DI
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 249 AKVLLIN--GADKSRKTKDGKTALDMSLCYGR 278
VL + G ++ ++ G+TAL +++ +GR
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGR 195
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 229 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKL 288
A G T L +A+ D+ K LL AD + + DG TAL M C + ++A L
Sbjct: 179 ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL-MCAC---EHGHKEIAGL 234
Query: 289 LKILP 293
L +P
Sbjct: 235 LLAVP 239
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 232 EGWTPLHIAIQSRNRDIAKVLLINGAD 258
+G + LHIAI+ R+ K+L+ NGAD
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGAD 115
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 232 EGWTPLHIAIQSRNRDIAKVLLINGAD 258
+G + LHIAI+ R+ K+L+ NGAD
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGAD 128
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal
That Trichomaglin Is A Novel S-Like Ribonuclease
Length = 209
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN----GADKSRKTKDGKTA 269
+++KL +KYNVD + D +A S+ D+ +++ GA + +
Sbjct: 122 KTLKLFMKYNVDKALEDAG-----IVASNSKMYDLKDIVVAVESAVGARPKLRCDEEGLV 176
Query: 270 LDMSLCYGRDFKSYDLAKL 288
+SLC+ +DFK D ++
Sbjct: 177 QKLSLCFDKDFKPRDCVQV 195
>pdb|2HCV|A Chain A, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2HCV|B Chain B, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2HCV|C Chain C, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2HCV|D Chain D, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2I56|A Chain A, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I56|B Chain B, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I56|C Chain C, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I56|D Chain D, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I57|A Chain A, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|2I57|B Chain B, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|2I57|C Chain C, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|2I57|D Chain D, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|3ITX|A Chain A, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITX|B Chain B, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITX|C Chain C, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITX|D Chain D, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|A Chain A, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|B Chain B, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|C Chain C, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|D Chain D, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|A Chain A, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|B Chain B, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|C Chain C, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|D Chain D, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|A Chain A, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|B Chain B, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|C Chain C, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|D Chain D, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|A Chain A, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|B Chain B, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|C Chain C, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|D Chain D, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
Length = 438
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 208 VQVGAMQSVKLLIKYN--VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 263
+ GA++ +L + +N VD +G+ P H+ QS N LIN A++ R+
Sbjct: 292 LDAGAIEPYRLFLVFNELVDAEARGVKGFHPAHMIDQSHNVTDPIESLINSANEIRRA 349
>pdb|3ITL|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITL|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITL|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITL|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITO|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
pdb|3ITO|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
pdb|3ITO|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
pdb|3ITO|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
Length = 438
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 208 VQVGAMQSVKLLIKYN--VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 263
+ GA++ +L + +N VD +G+ P H+ QS N LIN A++ R+
Sbjct: 292 LDAGAIEPYRLFLVFNELVDAEARGVKGFHPAHMINQSHNVTDPIESLINSANEIRRA 349
>pdb|4GJI|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJJ|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
Length = 438
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 208 VQVGAMQSVKLLIKYN--VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 263
+ GA++ +L + +N VD +G+ P H+ QS N LIN A++ R+
Sbjct: 292 LDAGAIEPYRLFLVFNELVDAEARGVKGFHPAHMIDQSHNVTDPIESLINSANEIRRA 349
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVD--------VNVADNEGWTPLHIAIQSR 244
I +D G T + Y +Q+G + + K I +NV+ +NV D G T + +
Sbjct: 23 ILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCY 82
Query: 245 NRDIAKVL-LINGADKSRKTKDGK 267
D A V+ +++ DK R + K
Sbjct: 83 YADTAAVIFVVDSTDKDRMSTASK 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,283,336
Number of Sequences: 62578
Number of extensions: 185932
Number of successful extensions: 768
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 356
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)