Your job contains 1 sequence.
>022567
MQGGEELSIEELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATA
KQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDAT
IEAITPNGYYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQ
SKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQTTKGKTK
KVGFFSGRKRESIFKSPDDPYGKVGVTGSGKGLTDFQKREKHLHLKGGGIADTDD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022567
(295 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065269 - symbol:AT2G02570 species:3702 "Arabi... 997 1.7e-100 1
DICTYBASE|DDB_G0293636 - symbol:DDB_G0293636 "putative sp... 251 1.9e-21 1
FB|FBgn0039977 - symbol:CG17454 species:7227 "Drosophila ... 165 7.3e-11 1
ZFIN|ZDB-GENE-030131-614 - symbol:smndc1 "survival motor ... 129 1.0e-10 2
UNIPROTKB|E1BQK7 - symbol:SMNDC1 "Uncharacterized protein... 120 4.0e-09 2
UNIPROTKB|G4MVK7 - symbol:MGG_08894 "Uncharacterized prot... 103 1.2e-08 3
MGI|MGI:1923729 - symbol:Smndc1 "survival motor neuron do... 109 2.4e-08 2
RGD|1309151 - symbol:Smndc1 "survival motor neuron domain... 109 2.4e-08 2
WB|WBGene00004891 - symbol:smr-1 species:6239 "Caenorhabd... 99 3.0e-08 2
UNIPROTKB|F1S5M7 - symbol:SMNDC1 "Uncharacterized protein... 109 3.0e-08 2
UNIPROTKB|J9NSV5 - symbol:SMNDC1 "Uncharacterized protein... 109 6.1e-08 2
UNIPROTKB|O75940 - symbol:SMNDC1 "Survival of motor neuro... 109 6.1e-08 2
UNIPROTKB|F1MS68 - symbol:SMNDC1 "Survival of motor neuro... 108 8.0e-08 2
UNIPROTKB|Q3T045 - symbol:SMNDC1 "Survival of motor neuro... 108 8.0e-08 2
UNIPROTKB|E2QYH2 - symbol:SMNDC1 "Uncharacterized protein... 109 1.5e-07 2
ASPGD|ASPL0000065073 - symbol:AN10945 species:162425 "Eme... 138 4.7e-07 1
MGI|MGI:109257 - symbol:Smn1 "survival motor neuron 1" sp... 115 0.00023 1
UNIPROTKB|Q98SU9 - symbol:SMN "Uncharacterized protein" s... 111 0.00054 1
UNIPROTKB|I3LSV5 - symbol:I3LSV5 "Uncharacterized protein... 111 0.00070 1
>TAIR|locus:2065269 [details] [associations]
symbol:AT2G02570 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0010413 "glucuronoxylan
metabolic process" evidence=RCA] [GO:0045492 "xylan biosynthetic
process" evidence=RCA] InterPro:IPR010304 Pfam:PF06003
InterPro:IPR002999 GO:GO:0005634 GO:GO:0005737 EMBL:CP002685
GO:GO:0006397 GO:GO:0003723 SMART:SM00333 PROSITE:PS50304 KO:K12839
OMA:NNKAYSK EMBL:BT002938 EMBL:BT004365 IPI:IPI00516996
RefSeq:NP_001077871.1 RefSeq:NP_178361.2 RefSeq:NP_849927.1
UniGene:At.21657 ProteinModelPortal:Q84K41 SMR:Q84K41 IntAct:Q84K41
PRIDE:Q84K41 EnsemblPlants:AT2G02570.1 EnsemblPlants:AT2G02570.2
EnsemblPlants:AT2G02570.4 GeneID:814787 KEGG:ath:AT2G02570
TAIR:At2g02570 InParanoid:Q84K41 PhylomeDB:Q84K41
ProtClustDB:CLSN2690631 Genevestigator:Q84K41 Uniprot:Q84K41
Length = 300
Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
Identities = 201/300 (67%), Positives = 235/300 (78%)
Query: 1 MQGG-EELSIEELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLAT 59
M GG EELSIE+L S++STYKEQL+QVR+LL DP NSEYADMEKEL EVIALTEE+LAT
Sbjct: 1 MVGGVEELSIEQLASSISTYKEQLEQVRQLLSEDPRNSEYADMEKELKEVIALTEEVLAT 60
Query: 60 AKQNAISVSETGTSASASPNL--LQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWY 117
AKQN IS+S+ G SA A+P L+ KT + ++ K VGTKVQAV+S+DGEWY
Sbjct: 61 AKQNEISLSDAGVSAEATPGSPDLEGAWEKTGLRNDPIHEGKFPVGTKVQAVFSDDGEWY 120
Query: 118 DATIEAITPNGYYVTYDSWGNKEEVDPANVRPV--NLLVEAEKVAEATKLAIKRKIEQAA 175
DATIEA T NGY+V YD WGNKEEVDP NVRP+ N +VEAE++A+ATK A+KRKIE+AA
Sbjct: 121 DATIEAHTANGYFVAYDEWGNKEEVDPDNVRPIEQNAIVEAERLAQATKNALKRKIEKAA 180
Query: 176 ASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXX 235
+SD+Q+K+LPAKL I+P+DPEDVK AKRKKIHAFKSK RFEQLEV QNK+QN W
Sbjct: 181 SSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKSKARFEQLEVVQNKKQNDWQQFQTT 240
Query: 236 XXXXXXXXXXXXRKRESIFKSPDDPYGKVGVTGSGKGLTDFQKREKHLHLKGGGIADTDD 295
RK+ESIFKSP+DP+GKVGVTGSGKGLTDFQKREKHLHLK G TD+
Sbjct: 241 KAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLTDFQKREKHLHLKSGNAEGTDE 300
>DICTYBASE|DDB_G0293636 [details] [associations]
symbol:DDB_G0293636 "putative splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR002999 dictyBase:DDB_G0293636 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:AAFI02000218 KO:K12839
RefSeq:XP_629067.1 ProteinModelPortal:Q54BG2
EnsemblProtists:DDB0233601 GeneID:8629359 KEGG:ddi:DDB_G0293636
eggNOG:KOG3026 InParanoid:Q54BG2 OMA:MTESQQF Uniprot:Q54BG2
Length = 324
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 71/222 (31%), Positives = 112/222 (50%)
Query: 61 KQNAISVSETGTSASASPNLLQSKENKTESGSISDN---QEKLAVGTKVQAVYSEDGEWY 117
K N I + + ++ N + N S I DN + K+ VG+ + YS DG WY
Sbjct: 100 KNNNIIIPPPTINKKSTFN--DNDNNNIPSNIIEDNSFSETKMTVGSVCEGQYSVDGIWY 157
Query: 118 DATIEAITPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAA 176
A I++I +G + VTY +GN E + +RP ++ +A T L K+ ++ A
Sbjct: 158 RAKIDSINKDGTFVVTYTDYGNTETLTFDKIRPPTRSLKL--LANQT-LEQKKYLQ---A 211
Query: 177 SDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXXX 236
D Q + +P L I P+D E+VK K+KKIH+ KS R +++E ++ AW
Sbjct: 212 PD-QIQVIPKSLKILPEDSEEVKKQKQKKIHSIKSMNRLKKVEEEGKQKTQAWKDFVNKP 270
Query: 237 XXXXXXXXXXXRKRESIFKSPDDPYGKVGVTGSGKGLTDFQK 278
RK+ S+F + D + KVGV GSG+G+T+ Q+
Sbjct: 271 KKSIPGTFTD-RKKTSMFSTGDGIHSKVGVIGSGRGMTESQQ 311
>FB|FBgn0039977 [details] [associations]
symbol:CG17454 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR010304 Pfam:PF06003 InterPro:IPR002999 GO:GO:0005737
EMBL:AE014296 GO:GO:0003723 SMART:SM00333 PROSITE:PS50304
GO:GO:0071011 GO:GO:0000398 GO:GO:0000381
GeneTree:ENSGT00560000077236 eggNOG:NOG251685 KO:K12839 HSSP:Q16637
OMA:NNKAYSK EMBL:AY061350 RefSeq:NP_001138001.1 UniGene:Dm.33433
SMR:Q95RI7 STRING:Q95RI7 EnsemblMetazoa:FBtr0299868 GeneID:7354399
KEGG:dme:Dmel_CG17454 UCSC:CG17454-RA FlyBase:FBgn0039977
InParanoid:Q95RI7 OrthoDB:EOG4G79FG GenomeRNAi:7354399
NextBio:20902822 Uniprot:Q95RI7
Length = 243
Score = 165 (63.1 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 46/129 (35%), Positives = 65/129 (50%)
Query: 15 NLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATA--KQNAISVSETGT 72
+L YK QLQQV L DP N E + +L EVI LT +L+ T +QN S E +
Sbjct: 4 DLHNYKLQLQQVEAALQTDPENEELLKLRSDLDEVITLTRDLIQTQLEEQNKSSYVEPSS 63
Query: 73 SASASPNLLQSKENKT-ESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAITPNGYY- 130
+ S N E E+ + + G K QA + ED ++YDATIE I+ G
Sbjct: 64 TKRDSSNYFDEIEAALLEAEKLVSAAKIWKKGDKCQAKWKEDRQYYDATIEDISSTGEVN 123
Query: 131 VTYDSWGNK 139
V +D++ N+
Sbjct: 124 VIFDAYQNR 132
Score = 108 (43.1 bits), Expect = 0.00099, P = 0.00099
Identities = 37/150 (24%), Positives = 62/150 (41%)
Query: 136 WGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDP 195
W + A + ++ E + +A + + + +++ P+ P+
Sbjct: 102 WKEDRQYYDATIEDISSTGEVNVIFDAYQNRSTTHVNELRERTIRNEVFPSNKRHRPNQK 161
Query: 196 EDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFK 255
E +K K+KK + RF+ LE + +N W K SIF
Sbjct: 162 EYLKKRKQKK------QQRFKDLEEERESDKNKWLNFNNKNQKKNGM------KARSIFA 209
Query: 256 SPDDPYGKVGV--TGS-GKGLTDFQKREKH 282
SPD+ G+VGV G+ GKG+TDF EK+
Sbjct: 210 SPDNVSGRVGVGTCGTAGKGMTDFTVGEKY 239
>ZFIN|ZDB-GENE-030131-614 [details] [associations]
symbol:smndc1 "survival motor neuron domain
containing 1" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR010304 Pfam:PF06003 InterPro:IPR002999
ZFIN:ZDB-GENE-030131-614 GO:GO:0005737 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 GO:GO:0015030
SMART:SM00333 PROSITE:PS50304 GeneTree:ENSGT00560000077236
CTD:10285 eggNOG:NOG251685 HOGENOM:HOG000007521 HOVERGEN:HBG057021
KO:K12839 OrthoDB:EOG4H464Q EMBL:BC045967 EMBL:BC067338
IPI:IPI00492042 RefSeq:NP_997766.1 UniGene:Dr.75917 HSSP:Q16637
ProteinModelPortal:Q7ZV80 STRING:Q7ZV80 PRIDE:Q7ZV80
Ensembl:ENSDART00000031547 GeneID:572679 KEGG:dre:572679
InParanoid:Q7ZV80 OMA:NNKAYSK NextBio:20891003 Bgee:Q7ZV80
Uniprot:Q7ZV80
Length = 237
Score = 129 (50.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
EEL LS YK QLQQV L DP N + ++K+L EVI LT++LL + Q A +
Sbjct: 3 EELMKQLSNYKAQLQQVEAALSIDPDNEDLLKLQKDLQEVIELTKDLLTS--QPAEGTTS 60
Query: 70 TGTSASASPN 79
T +S + +P+
Sbjct: 61 TKSSETVAPS 70
Score = 76 (31.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 34/128 (26%), Positives = 54/128 (42%)
Query: 160 AEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKR--KKIHAFKSKMRFEQ 217
AE L + +K+E+ D + K P ++++A +R KK A K R ++
Sbjct: 114 AEVMPLHMLKKVEEGRIRD----EIDGK----PKSKKELQAEQREYKKKKAQKKVQRMKE 165
Query: 218 LEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFKSPDDPYGKVGVTGSG---KGLT 274
LE + +++ W KR SIF SP+ GKVGV G K +T
Sbjct: 166 LEQEREDQKSKWQQFNNKAYSKNKKGQV---KR-SIFASPESVNGKVGVGTCGIADKPMT 221
Query: 275 DFQKREKH 282
+ K+
Sbjct: 222 QYNDTSKY 229
>UNIPROTKB|E1BQK7 [details] [associations]
symbol:SMNDC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR010304
Pfam:PF06003 InterPro:IPR002999 GO:GO:0005634 GO:GO:0005737
GO:GO:0006397 GO:GO:0003723 SMART:SM00333 PROSITE:PS50304
GeneTree:ENSGT00560000077236 CTD:10285 KO:K12839 OMA:NNKAYSK
EMBL:AADN02030883 IPI:IPI00582553 RefSeq:XP_421753.2
Ensembl:ENSGALT00000013945 GeneID:423889 KEGG:gga:423889
NextBio:20826290 Uniprot:E1BQK7
Length = 238
Score = 120 (47.3 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNADNEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD 62
Query: 70 TGTSASASPN 79
+ SASA P+
Sbjct: 63 S--SASALPS 70
Score = 100 (40.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/112 (32%), Positives = 54/112 (48%)
Query: 54 EELLATAK--QNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYS 111
E+LL K Q I +++ S S L S + + ++ + K VG + A++S
Sbjct: 30 EDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSS---ASALPSHSWK--VGDRCMAIWS 84
Query: 112 EDGEWYDATIEAITP-NGYY-VTYDSWGNKEEVDPANVRPVNLLVEAEKVAE 161
EDG+ Y+A IE I NG VT+ +GN E N++PV E K E
Sbjct: 85 EDGQCYEAEIEEIDEENGTAAVTFAGYGNAEVTPLFNLKPVE---EGRKAKE 133
Score = 72 (30.4 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 36/128 (28%), Positives = 52/128 (40%)
Query: 160 AEATKLAIKRKIEQA--AASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQ 217
AE T L + +E+ A D +K + K I + K+KK A K R ++
Sbjct: 114 AEVTPLFNLKPVEEGRKAKEDSGNKPMSKKEMIAQQ-----REYKKKK--ALKKAQRIKE 166
Query: 218 LEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFKSPDDPYGKVGVTGSG---KGLT 274
LE + ++ W KR SIF SP+ GKVGV G K +T
Sbjct: 167 LEQEREDQKVKWQQFNNRAYSKNKKGQV---KR-SIFASPESVTGKVGVGTCGIADKPMT 222
Query: 275 DFQKREKH 282
+Q K+
Sbjct: 223 QYQDTSKY 230
>UNIPROTKB|G4MVK7 [details] [associations]
symbol:MGG_08894 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CM001232 KO:K12839 RefSeq:XP_003713923.1
ProteinModelPortal:G4MVK7 EnsemblFungi:MGG_08894T0 GeneID:2679880
KEGG:mgr:MGG_08894 Uniprot:G4MVK7
Length = 328
Score = 103 (41.3 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 173 QAAASDFQSKS--LPAKLHINPDDPED--VKAAKRKKIHAFKSKMRFEQLEVTQNKRQNA 228
Q+AA+ S L A + P P+D AA K + FK ++LE +NK Q+
Sbjct: 216 QSAAAMRNSSGVVLSASPSLYPQKPQDGGEGAADAKPVKKFKKIKATKELEAGKNKWQD- 274
Query: 229 WXXXXXXXXXXXXXXXXXXRKRESIFKSPDDPYGKVGVTGSGKGLTDFQKREKHLH 284
+K++S+F++P+ +G+VG TGSG+ + R +H++
Sbjct: 275 ---------FNAKSKFGKSQKKDSMFRTPEGVHGRVGFTGSGQAMRKDASRSRHIY 321
Score = 76 (31.8 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 7 LSIEELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAIS 66
+SI + + + Y EQL+ V L DP + E +++EL I++ EE +A +
Sbjct: 1 MSIAQFEEDKAQYVEQLEIVLSSLKDDPDSVELQALKEELESAISMIEESIAELRPKKTQ 60
Query: 67 VSETGTSASASP 78
+ASP
Sbjct: 61 APPPPPPKAASP 72
Score = 51 (23.0 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 111 SEDGEWYDATIEAITPNG----YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEAT 163
S D +Y A I ++T + Y V + S+G E + +++PV + K A+ T
Sbjct: 125 SGDKGFYPARITSVTGSSSARMYTVKFKSYGTVETLRSHDIKPVTAPAQKRK-ADGT 180
>MGI|MGI:1923729 [details] [associations]
symbol:Smndc1 "survival motor neuron domain containing 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR010304 Pfam:PF06003
InterPro:IPR002999 MGI:MGI:1923729 GO:GO:0005737 GO:GO:0006915
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0015030 SMART:SM00333 PROSITE:PS50304
GeneTree:ENSGT00560000077236 CTD:10285 eggNOG:NOG251685
HOGENOM:HOG000007521 HOVERGEN:HBG057021 KO:K12839 OrthoDB:EOG4H464Q
OMA:NNKAYSK EMBL:DQ479929 EMBL:AK078834 EMBL:AK090047 EMBL:BC058779
EMBL:BC098223 IPI:IPI00221714 RefSeq:NP_766017.1 UniGene:Mm.313687
ProteinModelPortal:Q8BGT7 SMR:Q8BGT7 STRING:Q8BGT7
PhosphoSite:Q8BGT7 PaxDb:Q8BGT7 PRIDE:Q8BGT7 DNASU:76479
Ensembl:ENSMUST00000025997 GeneID:76479 KEGG:mmu:76479
UCSC:uc008hws.1 InParanoid:Q8BGT7 NextBio:345220 Bgee:Q8BGT7
CleanEx:MM_SMNDC1 Genevestigator:Q8BGT7
GermOnline:ENSMUSG00000025024 Uniprot:Q8BGT7
Length = 238
Score = 109 (43.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD 62
Query: 70 TGTSASASP 78
+ AS P
Sbjct: 63 S--FASTQP 69
Score = 78 (32.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 41/149 (27%), Positives = 59/149 (39%)
Query: 140 EEVDPAN-VRPVNLLVEAEKVAEATKLAIKRKIEQA--AASDFQSKSLPAKLHINPDDPE 196
EE+D N + V AE T L + +E+ A D +K + K I
Sbjct: 95 EEIDEENGTAAITFAVYGN--AEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQ--- 149
Query: 197 DVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFKS 256
+ K+KK A K R ++LE + ++ W KR SIF S
Sbjct: 150 --REYKKKK--ALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQV---KR-SIFAS 201
Query: 257 PDDPYGKVGVTGSG---KGLTDFQKREKH 282
P+ GKVGV G K +T +Q K+
Sbjct: 202 PESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>RGD|1309151 [details] [associations]
symbol:Smndc1 "survival motor neuron domain containing 1"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR010304 Pfam:PF06003 InterPro:IPR002999 RGD:1309151
GO:GO:0005737 GO:GO:0006915 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 GO:GO:0015030
SMART:SM00333 PROSITE:PS50304 GeneTree:ENSGT00560000077236
CTD:10285 eggNOG:NOG251685 HOGENOM:HOG000007521 HOVERGEN:HBG057021
KO:K12839 OrthoDB:EOG4H464Q HSSP:Q16637 OMA:NNKAYSK EMBL:BC097986
EMBL:BC098697 IPI:IPI00370325 IPI:IPI00627069 RefSeq:NP_001020571.1
RefSeq:NP_001030311.1 UniGene:Rn.103854 UniGene:Rn.216487
ProteinModelPortal:Q4QQU6 STRING:Q4QQU6 PRIDE:Q4QQU6
Ensembl:ENSRNOT00000020539 GeneID:287768 KEGG:rno:287768
InParanoid:Q4QQU6 NextBio:626977 Genevestigator:Q4QQU6
Uniprot:Q4QQU6
Length = 238
Score = 109 (43.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLTSSD 62
Query: 70 TGTSASASP 78
+ AS P
Sbjct: 63 S--FASTQP 69
Score = 78 (32.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 41/149 (27%), Positives = 59/149 (39%)
Query: 140 EEVDPAN-VRPVNLLVEAEKVAEATKLAIKRKIEQA--AASDFQSKSLPAKLHINPDDPE 196
EE+D N + V AE T L + +E+ A D +K + K I
Sbjct: 95 EEIDEENGTAAITFAVYGN--AEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQ--- 149
Query: 197 DVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFKS 256
+ K+KK A K R ++LE + ++ W KR SIF S
Sbjct: 150 --REYKKKK--ALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQV---KR-SIFAS 201
Query: 257 PDDPYGKVGVTGSG---KGLTDFQKREKH 282
P+ GKVGV G K +T +Q K+
Sbjct: 202 PESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>WB|WBGene00004891 [details] [associations]
symbol:smr-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] GO:GO:0009792 GO:GO:0042127
EMBL:FO081503 GO:GO:0007281 GO:GO:0040020
GeneTree:ENSGT00560000077236 HOGENOM:HOG000007521 KO:K12839
GeneID:175281 KEGG:cel:CELE_Y71D11A.2 UCSC:Y71D11A.2b CTD:175281
NextBio:887510 RefSeq:NP_001022932.1 ProteinModelPortal:Q95Y51
SMR:Q95Y51 PRIDE:Q95Y51 EnsemblMetazoa:Y71D11A.2a.1
EnsemblMetazoa:Y71D11A.2a.2 WormBase:Y71D11A.2a InParanoid:Q95Y51
OMA:KATRGAM ArrayExpress:Q95Y51 Uniprot:Q95Y51
Length = 239
Score = 99 (39.9 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 16 LSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAK 61
L++YK QLQQV L+ DP N E ++++L E+I+L E+L T K
Sbjct: 5 LASYKLQLQQVEAALLGDPTNVELLKLKEDLGEIISLQEDLAETDK 50
Score = 89 (36.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 39/159 (24%), Positives = 71/159 (44%)
Query: 69 ETGTSASASPNLLQSKENKTESGSISDNQ--EKLAVGTKVQAVYSEDGEWYDATIEAITP 126
+ G S +L ++ + ++ ++ Q K VG +V A + DG+ A I+++TP
Sbjct: 34 DLGEIISLQEDLAETDKAESSERAVVAPQVIHKWTVGERVIAPHP-DGKKVFARIDSLTP 92
Query: 127 NGYYVTYDSWGNKEEVDPANVR-PV-----NLLVEAEKVAEATKLAIKRKIEQAAASDFQ 180
G +T+ S G K VDPA+++ P N + K A +K QA +
Sbjct: 93 AGVAITFTSTGTKTIVDPADLQLPPENQRKNYAFDNTKSAAGPSTQHGKKEWQAEKERRR 152
Query: 181 SKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLE 219
K+L K + + +K ++K F +K + L+
Sbjct: 153 QKAL--KKQQKQKELDSIKDGEKKSWQKFNTKANAKGLK 189
>UNIPROTKB|F1S5M7 [details] [associations]
symbol:SMNDC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR010304
Pfam:PF06003 InterPro:IPR002999 GO:GO:0005634 GO:GO:0005737
GO:GO:0006397 GO:GO:0003723 SMART:SM00333 PROSITE:PS50304
GeneTree:ENSGT00560000077236 OMA:NNKAYSK EMBL:CT737363
Ensembl:ENSSSCT00000028296 Uniprot:F1S5M7
Length = 238
Score = 109 (43.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD 62
Query: 70 TGTSASASP 78
+ AS P
Sbjct: 63 S--FASTQP 69
Score = 77 (32.2 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 41/148 (27%), Positives = 58/148 (39%)
Query: 140 EEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQA--AASDFQSKSLPAKLHINPDDPED 197
EE+D N + AE T L + +E+ A D SK + K I
Sbjct: 95 EEIDEENGTAA-ITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGSKPMSKKEMIAQQ---- 149
Query: 198 VKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFKSP 257
+ K+KK A K R ++LE + ++ W KR SIF SP
Sbjct: 150 -REYKKKK--ALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQV---KR-SIFASP 202
Query: 258 DDPYGKVGVTGSG---KGLTDFQKREKH 282
+ GKVGV G K +T +Q K+
Sbjct: 203 ESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>UNIPROTKB|J9NSV5 [details] [associations]
symbol:SMNDC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR010304 Pfam:PF06003 InterPro:IPR002999 GO:GO:0005634
GO:GO:0005737 GO:GO:0006397 GO:GO:0003723 SMART:SM00333
PROSITE:PS50304 GeneTree:ENSGT00560000077236 CTD:10285 KO:K12839
EMBL:AAEX03015524 RefSeq:XP_535011.2 ProteinModelPortal:J9NSV5
Ensembl:ENSCAFT00000048029 GeneID:477817 KEGG:cfa:477817
Uniprot:J9NSV5
Length = 238
Score = 109 (43.4 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD 62
Query: 70 TGTSASASP 78
+ AS P
Sbjct: 63 S--FASTQP 69
Score = 74 (31.1 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 40/148 (27%), Positives = 58/148 (39%)
Query: 140 EEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQA--AASDFQSKSLPAKLHINPDDPED 197
EE+D N + AE T L + +E+ A D +K + K I
Sbjct: 95 EEIDEENGTAA-ITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQ---- 149
Query: 198 VKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFKSP 257
+ K+KK A K R ++LE + ++ W KR SIF SP
Sbjct: 150 -REYKKKK--ALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQV---KR-SIFASP 202
Query: 258 DDPYGKVGVTGSG---KGLTDFQKREKH 282
+ GKVGV G K +T +Q K+
Sbjct: 203 ESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>UNIPROTKB|O75940 [details] [associations]
symbol:SMNDC1 "Survival of motor neuron-related-splicing
factor 30" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR010304 Pfam:PF06003 InterPro:IPR002999
GO:GO:0005737 GO:GO:0006915 GO:GO:0006917 GO:GO:0016607
EMBL:CH471066 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0015030 SMART:SM00333 PROSITE:PS50304 GO:GO:0000375
EMBL:AL360182 CTD:10285 eggNOG:NOG251685 HOGENOM:HOG000007521
HOVERGEN:HBG057021 KO:K12839 OrthoDB:EOG4H464Q OMA:NNKAYSK
EMBL:AF083385 EMBL:AF107463 EMBL:AK314013 EMBL:BC011234
IPI:IPI00025176 RefSeq:NP_005862.1 UniGene:Hs.632093 PDB:4A4F
PDB:4A4H PDBsum:4A4F PDBsum:4A4H ProteinModelPortal:O75940
SMR:O75940 IntAct:O75940 MINT:MINT-4527315 STRING:O75940
PhosphoSite:O75940 PaxDb:O75940 PeptideAtlas:O75940 PRIDE:O75940
DNASU:10285 Ensembl:ENST00000369592 Ensembl:ENST00000369603
GeneID:10285 KEGG:hsa:10285 UCSC:uc001kzc.4 GeneCards:GC10M112042
HGNC:HGNC:16900 MIM:603519 neXtProt:NX_O75940 PharmGKB:PA134990780
InParanoid:O75940 ChiTaRS:SMNDC1 GenomeRNAi:10285 NextBio:38968
Bgee:O75940 CleanEx:HS_SMNDC1 Genevestigator:O75940
GermOnline:ENSG00000119953 Uniprot:O75940
Length = 238
Score = 109 (43.4 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD 62
Query: 70 TGTSASASP 78
+ AS P
Sbjct: 63 S--FASTQP 69
Score = 74 (31.1 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 40/148 (27%), Positives = 58/148 (39%)
Query: 140 EEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQA--AASDFQSKSLPAKLHINPDDPED 197
EE+D N + AE T L + +E+ A D +K + K I
Sbjct: 95 EEIDEENGTAA-ITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQ---- 149
Query: 198 VKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFKSP 257
+ K+KK A K R ++LE + ++ W KR SIF SP
Sbjct: 150 -REYKKKK--ALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQV---KR-SIFASP 202
Query: 258 DDPYGKVGVTGSG---KGLTDFQKREKH 282
+ GKVGV G K +T +Q K+
Sbjct: 203 ESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>UNIPROTKB|F1MS68 [details] [associations]
symbol:SMNDC1 "Survival of motor neuron-related-splicing
factor 30" species:9913 "Bos taurus" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR010304 Pfam:PF06003 InterPro:IPR002999 GO:GO:0005634
GO:GO:0005737 GO:GO:0006397 GO:GO:0003723 SMART:SM00333
PROSITE:PS50304 GeneTree:ENSGT00560000077236 IPI:IPI00694358
UniGene:Bt.36226 OMA:NNKAYSK EMBL:DAAA02059202
Ensembl:ENSBTAT00000000722 Uniprot:F1MS68
Length = 238
Score = 108 (43.1 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD 62
Query: 70 TGTSASASP 78
AS P
Sbjct: 63 N--FASTQP 69
Score = 74 (31.1 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 40/148 (27%), Positives = 58/148 (39%)
Query: 140 EEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQA--AASDFQSKSLPAKLHINPDDPED 197
EE+D N + AE T L + +E+ A D +K + K I
Sbjct: 95 EEIDEENGTAA-ITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQ---- 149
Query: 198 VKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFKSP 257
+ K+KK A K R ++LE + ++ W KR SIF SP
Sbjct: 150 -REYKKKK--ALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQV---KR-SIFASP 202
Query: 258 DDPYGKVGVTGSG---KGLTDFQKREKH 282
+ GKVGV G K +T +Q K+
Sbjct: 203 ESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>UNIPROTKB|Q3T045 [details] [associations]
symbol:SMNDC1 "Survival of motor neuron-related-splicing
factor 30" species:9913 "Bos taurus" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR010304 Pfam:PF06003 InterPro:IPR002999 GO:GO:0005737
GO:GO:0006915 GO:GO:0008380 GO:GO:0016607 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 GO:GO:0015030 SMART:SM00333
PROSITE:PS50304 EMBL:BC102568 IPI:IPI00694358 RefSeq:NP_001030414.1
UniGene:Bt.36226 ProteinModelPortal:Q3T045 STRING:Q3T045
PRIDE:Q3T045 GeneID:520500 KEGG:bta:520500 CTD:10285
eggNOG:NOG251685 HOGENOM:HOG000007521 HOVERGEN:HBG057021
InParanoid:Q3T045 KO:K12839 OrthoDB:EOG4H464Q NextBio:20873121
Uniprot:Q3T045
Length = 238
Score = 108 (43.1 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD 62
Query: 70 TGTSASASP 78
AS P
Sbjct: 63 N--FASTQP 69
Score = 74 (31.1 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 40/148 (27%), Positives = 58/148 (39%)
Query: 140 EEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQA--AASDFQSKSLPAKLHINPDDPED 197
EE+D N + AE T L + +E+ A D +K + K I
Sbjct: 95 EEIDEENGTAA-ITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQ---- 149
Query: 198 VKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFKSP 257
+ K+KK A K R ++LE + ++ W KR SIF SP
Sbjct: 150 -REYKKKK--ALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQV---KR-SIFASP 202
Query: 258 DDPYGKVGVTGSG---KGLTDFQKREKH 282
+ GKVGV G K +T +Q K+
Sbjct: 203 ESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>UNIPROTKB|E2QYH2 [details] [associations]
symbol:SMNDC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR010304 Pfam:PF06003 InterPro:IPR002999 GO:GO:0005634
GO:GO:0005737 GO:GO:0006397 GO:GO:0003723 SMART:SM00333
PROSITE:PS50304 GeneTree:ENSGT00560000077236 OMA:NNKAYSK
EMBL:AAEX03015524 Ensembl:ENSCAFT00000017054 NextBio:20853236
Uniprot:E2QYH2
Length = 292
Score = 109 (43.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+
Sbjct: 58 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD 117
Query: 70 TGTSASASP 78
+ AS P
Sbjct: 118 S--FASTQP 124
Score = 74 (31.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 40/148 (27%), Positives = 58/148 (39%)
Query: 140 EEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQA--AASDFQSKSLPAKLHINPDDPED 197
EE+D N + AE T L + +E+ A D +K + K I
Sbjct: 150 EEIDEENGTAA-ITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQ---- 204
Query: 198 VKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXXXXXXXXXXXXXXRKRESIFKSP 257
+ K+KK A K R ++LE + ++ W KR SIF SP
Sbjct: 205 -REYKKKK--ALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQV---KR-SIFASP 257
Query: 258 DDPYGKVGVTGSG---KGLTDFQKREKH 282
+ GKVGV G K +T +Q K+
Sbjct: 258 ESVTGKVGVGTCGIADKPMTQYQDTSKY 285
>ASPGD|ASPL0000065073 [details] [associations]
symbol:AN10945 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002999 EMBL:BN001304
PROSITE:PS50304 EnsemblFungi:CADANIAT00000614 HOGENOM:HOG000215701
OMA:FYPARIT Uniprot:C8VBJ7
Length = 289
Score = 138 (53.6 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 66/292 (22%), Positives = 124/292 (42%)
Query: 9 IEELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTE----ELL-ATAKQN 63
+ L + + +K QL+ V+ L DP N+E ++ EL E+I LTE EL AT +
Sbjct: 4 VAALEAEVKEFKLQLETVQSSLQVDPDNTELQSLKAELEELINLTETSIAELRPATPQPT 63
Query: 64 AISVSETGT--SASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVY-SEDGEWYDAT 120
G+ ++ P S +T+ + S +V V A + S D +Y A
Sbjct: 64 TAPAKLKGSRDDNASKPGYRNSTAEQTDDNTNS-GPASFSVNEHVLARWVSGDNSFYPAR 122
Query: 121 IEAITPNG----YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRK-IEQAA 175
I +IT + Y V++ S+G E + +++P++ ++ A+ + + + Q
Sbjct: 123 ITSITGSSSNPVYIVSFKSYGTVESLTAKDLKPISNSDSRKRKADGSPGSSNHSPVPQPP 182
Query: 176 ASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWXXXXXX 235
+ + A INP A+++ A R +V++ + N
Sbjct: 183 ----HASVISAAADINP---ALANQARKEPSKATDGPAR--PAKVSRKVKANKELEAGKN 233
Query: 236 XXXXXXXXXXXXRKRESIFKSPDDPYGKVGVTGSGKGLTDFQKREKHLHLKG 287
RK +S+F++ + +VG TGSG+ + R +H++ +G
Sbjct: 234 KWKDFASKTKIGRK-DSMFRTGEGVNARVGFTGSGQQMRKDPTRTRHVYQQG 284
>MGI|MGI:109257 [details] [associations]
symbol:Smn1 "survival motor neuron 1" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007019 "microtubule depolymerization"
evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=ISO]
[GO:0017134 "fibroblast growth factor binding" evidence=ISO]
InterPro:IPR010304 Pfam:PF06003 InterPro:IPR002999 MGI:MGI:109257
GO:GO:0005634 GO:GO:0005737 GO:GO:0005730 GO:GO:0008380
GO:GO:0007268 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0007409 GO:GO:0015030 SMART:SM00333 PROSITE:PS50304
GO:GO:0007019 CTD:6606 eggNOG:NOG296671 HOVERGEN:HBG000211
KO:K13129 OMA:GYYLGLK OrthoDB:EOG4W9J54 HOGENOM:HOG000232199
EMBL:U63294 EMBL:U77714 EMBL:Y12835 EMBL:BC045158 IPI:IPI00129918
RefSeq:NP_001239558.1 RefSeq:NP_035550.1 UniGene:Mm.2025
ProteinModelPortal:P97801 SMR:P97801 IntAct:P97801 STRING:P97801
PhosphoSite:P97801 PaxDb:P97801 PRIDE:P97801
Ensembl:ENSMUST00000022147 GeneID:20595 KEGG:mmu:20595
InParanoid:P97801 NextBio:298911 Bgee:P97801 CleanEx:MM_SMN1
Genevestigator:P97801 GermOnline:ENSMUSG00000021645 Uniprot:P97801
Length = 288
Score = 115 (45.5 bits), Expect = 0.00023, P = 0.00023
Identities = 45/162 (27%), Positives = 81/162 (50%)
Query: 35 GNSEYADMEKELSEVIALTEELLATAKQNAIS---VSETGTSASASPNLLQSKENKTESG 91
G S+ +D+ + + +I ++ +A+ K +A+ + ET + +K+NK++
Sbjct: 23 GQSDDSDIWDDTA-LIKAYDKAVASFK-HALKNGDICETPDKPKGTARRKPAKKNKSQKK 80
Query: 92 SISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT--PNGYYVTYDSWGNKEEVDPANVRP 149
+ + ++ VG K AV+SEDG Y ATI +I V Y +GN+EE N+
Sbjct: 81 NATTPLKQWKVGDKCSAVWSEDGCIYPATITSIDFKRETCVVVYTGYGNREE---QNLS- 136
Query: 150 VNLLVEAEKVAEATKLAIKRKIEQAAASDFQ--SKSLPAKLH 189
+LL +VA +T+ + Q + D + S+SL +K H
Sbjct: 137 -DLLSPTCEVANSTEQNTQENESQVSTDDSEHSSRSLRSKAH 177
>UNIPROTKB|Q98SU9 [details] [associations]
symbol:SMN "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR010304
Pfam:PF06003 InterPro:IPR002999 GO:GO:0005634 GO:GO:0005737
GO:GO:0006397 GO:GO:0003723 SMART:SM00333 PROSITE:PS50304
eggNOG:NOG296671 GeneTree:ENSGT00560000077236 HOVERGEN:HBG000211
KO:K13129 OMA:GYYLGLK OrthoDB:EOG4W9J54 CTD:39844
HOGENOM:HOG000232199 HSSP:Q16637 EMBL:AADN02070647 EMBL:AF322650
IPI:IPI00579170 RefSeq:NP_989530.1 UniGene:Gga.3961 SMR:Q98SU9
STRING:Q98SU9 Ensembl:ENSGALT00000003821 GeneID:374025
KEGG:gga:374025 InParanoid:Q98SU9 NextBio:20813552 Uniprot:Q98SU9
Length = 264
Score = 111 (44.1 bits), Expect = 0.00054, P = 0.00054
Identities = 42/130 (32%), Positives = 64/130 (49%)
Query: 27 RELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAIS---VSETGTSAS--ASPNLL 81
R L G S+ +DM + + +I ++ +A+ K NA+ SE A
Sbjct: 4 RVLFRRGAGQSDDSDMWDDTA-LIKAYDKAVASFK-NALKNGDCSEPSDKQEQRAGVKRK 61
Query: 82 QSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT-PNGY-YVTYDSWGNK 139
SK+N+ + S + ++ VG AV+SEDG Y ATI +I G VTY +GNK
Sbjct: 62 NSKKNRNRNKSNAVPLKQWKVGDSCNAVWSEDGNVYPATIASINLKRGTCVVTYTGYGNK 121
Query: 140 EEVDPANVRP 149
EE + A++ P
Sbjct: 122 EEQNLADLLP 131
>UNIPROTKB|I3LSV5 [details] [associations]
symbol:I3LSV5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR010304
Pfam:PF06003 InterPro:IPR002999 GO:GO:0005634 GO:GO:0005737
GO:GO:0006397 GO:GO:0003723 SMART:SM00333 PROSITE:PS50304
GeneTree:ENSGT00560000077236 EMBL:FP102558
Ensembl:ENSSSCT00000030798 OMA:DESSGIC Uniprot:I3LSV5
Length = 296
Score = 111 (44.1 bits), Expect = 0.00070, P = 0.00070
Identities = 39/152 (25%), Positives = 76/152 (50%)
Query: 35 GNSEYADMEKELSEVIALTEELLATAKQNAIS---VSETGTSASASPNLLQSKENKTESG 91
G S+ D+ + + +I ++ +A+ K +A+ +SE A+P K+NK +
Sbjct: 32 GQSDDLDIWDDTA-LIKAYDKAVASFK-HALKNGDISEASDKPKATPKRKPPKKNKNQKK 89
Query: 92 SISDNQEKLAVGTKVQAVYSEDGEWYDATIEAITPNGYYVTYDSWGNKEEVDPANVRPVN 151
+ + + ++ VG + A++SEDG Y ATI++ V Y +G++EE N+ +
Sbjct: 90 NNTASLKQWKVGDRCSAIWSEDGCIYPATIDSFKRETCIVVYTGYGHREE---QNL--YD 144
Query: 152 LLVEAEKVAEATKLAIKRKIEQAAASDFQSKS 183
LL +VA T+ + ++ S +S+S
Sbjct: 145 LLSPTSEVANNTEENAQENENESQISTDESES 176
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.307 0.125 0.341 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 295 277 0.00080 115 3 11 23 0.49 34
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 588 (63 KB)
Total size of DFA: 179 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.63u 0.08s 30.71t Elapsed: 00:00:01
Total cpu time: 30.64u 0.08s 30.72t Elapsed: 00:00:01
Start: Fri May 10 06:13:16 2013 End: Fri May 10 06:13:17 2013