BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022567
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZV80|SPF30_DANRE Survival of motor neuron-related-splicing factor 30 OS=Danio rerio
GN=smndc1 PE=2 SV=1
Length = 237
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 127/281 (45%), Gaps = 62/281 (22%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
EEL LS YK QLQQV L DP N + ++K+L EVI LT++LL + Q A +
Sbjct: 3 EELMKQLSNYKAQLQQVEAALSIDPDNEDLLKLQKDLQEVIELTKDLLTS--QPAEGTTS 60
Query: 70 TGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG 128
T +S + +P+ VG A +S+DG+ Y+A IE I NG
Sbjct: 61 TKSSETVAPS------------------HSWRVGDHCMATWSQDGQVYEAEIEEIDNENG 102
Query: 129 Y-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAK 187
+T+ +GN A V P+++L +K+E+ D +
Sbjct: 103 TAAITFAGYGN------AEVMPLHML---------------KKVEEGRIRD--------E 133
Query: 188 LHINPDDPEDVKAAKRKKIHAFKSK--MRFEQLEVTQNKRQNAWQQFQT-TKGKTKKVGF 244
+ P ++++A +R+ K R ++LE + +++ WQQF K KK
Sbjct: 134 IDGKPKSKKELQAEQREYKKKKAQKKVQRMKELEQEREDQKSKWQQFNNKAYSKNKK--- 190
Query: 245 FSGRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREKH 282
G+ + SIF SP+ GKVGV G K +T + K+
Sbjct: 191 --GQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKY 229
>sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing factor 30 OS=Xenopus
tropicalis GN=smndc1 PE=2 SV=1
Length = 238
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 126/281 (44%), Gaps = 61/281 (21%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L+ YK QLQQV L + N + ++K+L EVI LT++LL++ SE
Sbjct: 3 EDLAKQLAGYKAQLQQVESALTANGENEDLLKLKKDLQEVIELTKDLLSS------QPSE 56
Query: 70 TGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWY-DATIEAITPNG 128
T A ++ + SGS S VG K AV+S+DG+WY E NG
Sbjct: 57 TADDAC---------DDMSASGSQS-----WKVGEKCMAVWSDDGQWYEAEIEEIDEENG 102
Query: 129 Y-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAK 187
+T+ +GN E N+RPV E K E S +LP
Sbjct: 103 TAAITFAGYGNAEVTSLLNLRPVE---EGRKAKE------------------DSGNLPM- 140
Query: 188 LHINPDDPEDVKAAKRK--KIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TKGKTKKVGF 244
+++ AA+R+ K A K R ++LE + ++ WQQF K KK
Sbjct: 141 ------SKKEMIAAQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNKAYSKNKK--- 191
Query: 245 FSGRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREKH 282
G+ + SIF SP+ GKVGV G K +T +Q K+
Sbjct: 192 --GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>sp|O75940|SPF30_HUMAN Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens
GN=SMNDC1 PE=1 SV=1
Length = 238
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 122/279 (43%), Gaps = 57/279 (20%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T Q + +++
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLST--QPSETLAS 60
Query: 70 TGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWY-DATIEAITPNG 128
+ + AS P VG K AV+SEDG+ Y E NG
Sbjct: 61 SDSFASTQPT------------------HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENG 102
Query: 129 Y-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAK 187
+T+ +GN E N++PV E K E D +K + K
Sbjct: 103 TAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKK 143
Query: 188 LHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TKGKTKKVGFFS 246
I + + KK A K R ++LE + ++ WQQF K KK
Sbjct: 144 EMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK----- 191
Query: 247 GRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREKH 282
G+ + SIF SP+ GKVGV G K +T +Q K+
Sbjct: 192 GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>sp|Q5R591|SPF30_PONAB Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii
GN=SMNDC1 PE=2 SV=1
Length = 238
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 122/279 (43%), Gaps = 57/279 (20%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T Q + +++
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLST--QPSETLAS 60
Query: 70 TGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWY-DATIEAITPNG 128
+ + AS P VG K A++SEDG+ Y E NG
Sbjct: 61 SDSFASTQPT------------------HSWKVGDKCMAIWSEDGQCYEAEIEEIDEENG 102
Query: 129 Y-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAK 187
+T+ +GN E N++PV E K E D +K + K
Sbjct: 103 TAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKK 143
Query: 188 LHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TKGKTKKVGFFS 246
I + + KK A K R ++LE + ++ WQQF K KK
Sbjct: 144 EMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK----- 191
Query: 247 GRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREKH 282
G+ + SIF SP+ GKVGV G K +T +Q K+
Sbjct: 192 GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>sp|Q4QQU6|SPF30_RAT Survival of motor neuron-related-splicing factor 30 OS=Rattus
norvegicus GN=Smndc1 PE=2 SV=1
Length = 238
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 122/279 (43%), Gaps = 57/279 (20%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T Q + +++
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLST--QPSETLTS 60
Query: 70 TGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWY-DATIEAITPNG 128
+ + AS P VG K AV+SEDG+ Y E NG
Sbjct: 61 SDSFASTQPT------------------HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENG 102
Query: 129 Y-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAK 187
+T+ +GN E N++PV E K E D +K + K
Sbjct: 103 TAAITFAVYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKK 143
Query: 188 LHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TKGKTKKVGFFS 246
I + + KK A K R ++LE + ++ WQQF K KK
Sbjct: 144 EMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK----- 191
Query: 247 GRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREKH 282
G+ + SIF SP+ GKVGV G K +T +Q K+
Sbjct: 192 GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>sp|Q8BGT7|SPF30_MOUSE Survival of motor neuron-related-splicing factor 30 OS=Mus musculus
GN=Smndc1 PE=2 SV=1
Length = 238
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 122/279 (43%), Gaps = 57/279 (20%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T Q + +++
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLST--QPSETLAS 60
Query: 70 TGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWY-DATIEAITPNG 128
+ + AS P VG K AV+SEDG+ Y E NG
Sbjct: 61 SDSFASTQPT------------------HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENG 102
Query: 129 Y-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAK 187
+T+ +GN E N++PV E K E D +K + K
Sbjct: 103 TAAITFAVYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKK 143
Query: 188 LHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TKGKTKKVGFFS 246
I + + KK A K R ++LE + ++ WQQF K KK
Sbjct: 144 EMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK----- 191
Query: 247 GRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREKH 282
G+ + SIF SP+ GKVGV G K +T +Q K+
Sbjct: 192 GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>sp|Q3T045|SPF30_BOVIN Survival of motor neuron-related-splicing factor 30 OS=Bos taurus
GN=SMNDC1 PE=2 SV=1
Length = 238
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 121/279 (43%), Gaps = 57/279 (20%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSE 69
E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T Q + +++
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLST--QPSETLAS 60
Query: 70 TGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWY-DATIEAITPNG 128
+ AS P VG K A++SEDG+ Y E NG
Sbjct: 61 SDNFASTQPT------------------HSWKVGDKCMAIWSEDGQCYEAEIEEIDEENG 102
Query: 129 Y-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAK 187
+T+ +GN E N++PV E K E D +K + K
Sbjct: 103 TAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKK 143
Query: 188 LHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TKGKTKKVGFFS 246
I + + KK A K R ++LE + ++ WQQF K KK
Sbjct: 144 EMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK----- 191
Query: 247 GRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREKH 282
G+ + SIF SP+ GKVGV G K +T +Q K+
Sbjct: 192 GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230
>sp|A9CPT4|TDRD1_ORYLA Tudor domain-containing protein 1 OS=Oryzias latipes GN=tdrd1 PE=2
SV=1
Length = 1133
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 81 LQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNGYYVTYDSWGNK 139
LQ K + SG + + A GT A +SED +WY A + A T V Y +GN
Sbjct: 417 LQLKLREHCSGVETQQDFRPAPGTVCCAQFSEDKQWYRAQVLAYSTEKSVCVGYIDFGNS 476
Query: 140 EEVDPANVRPVN-LLVEAEKVAEATKLAIKRKIEQAAASDFQSKSL 184
EEVD ++RP++ L+ K A + LA + +E + + + S L
Sbjct: 477 EEVDLNHLRPISPALLALPKQAISCILAGVQPVEDSWSEECISTML 522
>sp|Q5RE18|SMN_PONAB Survival motor neuron protein OS=Pongo abelii GN=SMN1 PE=2 SV=1
Length = 294
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 67 VSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-- 124
+ ET + +P +K+NK++ + + + ++ VG K A++SEDG Y ATI +I
Sbjct: 59 ICETSGKSKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDF 118
Query: 125 TPNGYYVTYDSWGNKEE 141
V Y +GN+EE
Sbjct: 119 KRETCVVVYTGYGNREE 135
>sp|P97801|SMN_MOUSE Survival motor neuron protein OS=Mus musculus GN=Smn1 PE=1 SV=1
Length = 288
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 83 SKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI--TPNGYYVTYDSWGNKE 140
+K+NK++ + + ++ VG K AV+SEDG Y ATI +I V Y +GN+E
Sbjct: 72 AKKNKSQKKNATTPLKQWKVGDKCSAVWSEDGCIYPATITSIDFKRETCVVVYTGYGNRE 131
Query: 141 EVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASD--FQSKSLPAKLH 189
E + + +LL +VA +T+ + Q + D S+SL +K H
Sbjct: 132 EQNLS-----DLLSPTCEVANSTEQNTQENESQVSTDDSEHSSRSLRSKAH 177
>sp|Q16637|SMN_HUMAN Survival motor neuron protein OS=Homo sapiens GN=SMN1 PE=1 SV=1
Length = 294
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 67 VSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-- 124
+ ET +P +K+NK++ + + + ++ VG K A++SEDG Y ATI +I
Sbjct: 59 ICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDF 118
Query: 125 TPNGYYVTYDSWGNKEE 141
V Y +GN+EE
Sbjct: 119 KRETCVVVYTGYGNREE 135
>sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=2
SV=2
Length = 1180
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 96 NQEKLAVGTKVQAVYSEDGEWYDATIEAITPNGYY-VTYDSWGNKEEVDPANVRPV 150
N K +G A ++ DG WY A ++ I PNG+ V + +GN EEV +R +
Sbjct: 759 NGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMI 814
>sp|O02771|SMN_CANFA Survival motor neuron protein OS=Canis familiaris GN=SMN1 PE=2 SV=1
Length = 287
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 67 VSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT- 125
+SE ++P +K+NK++ + + ++ VG K AV+SEDG Y ATI +I
Sbjct: 54 ISEASDKPKSTPKRKPAKKNKSQKKNATTALKQWKVGDKCSAVWSEDGCIYPATIASIDF 113
Query: 126 -PNGYYVTYDSWGNKEEVDPANVRPVNLLVEAEKVA 160
V Y +GN+EE NV +LL A +VA
Sbjct: 114 KRETCVVVYTGYGNREE---QNVS--DLLSPACEVA 144
>sp|Q58EK5|TDRD1_DANRE Tudor domain-containing protein 1 OS=Danio rerio GN=tdrd1 PE=2 SV=2
Length = 1175
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 101 AVGTKVQAVYSEDGEWYDATIEAITP-NGYYVTYDSWGNKEEVDPANVRPVN--LLVEAE 157
A GT +++SED +WY A + A + + V Y +GN EEV+ +RP++ LL A
Sbjct: 455 APGTVCCSLFSEDNQWYRAKVLAYSSEDRVCVGYIDFGNSEEVELNRLRPISKELLALAT 514
Query: 158 KVAEATKLAIK 168
+ + IK
Sbjct: 515 QAIPCSLAGIK 525
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 96 NQEKLAVGTKVQAVYSEDGEWYDATIEAITPNGYYVTYDSWGNKEEVDPANVRPVN 151
NQ G A +S D WY A + +T +V Y +GN E V +++ P+
Sbjct: 922 NQCHPLPGASCCAQFSGDKNWYRAVVLEVTTKHAHVIYSDYGNMETVPLSSILPIT 977
>sp|Q6NRP6|TDRD3_XENLA Tudor domain-containing protein 3 OS=Xenopus laevis GN=tdrd3 PE=2
SV=1
Length = 650
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 87 KTESGSISDNQEKLAV--------GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSW 136
K +SGSI ++ AV G + A+Y ED ++Y A +EA+ +G V + +
Sbjct: 534 KKKSGSIKPDKPLEAVYSGFSWRSGDECLALYWEDNKYYRAEVEALHSSGTTAVVKFSDY 593
Query: 137 GNKEEVDPANVRPV 150
GN EEV N+RP+
Sbjct: 594 GNYEEVLLENIRPI 607
>sp|Q5ZMS6|TDRD3_CHICK Tudor domain-containing protein 3 OS=Gallus gallus GN=TDRD3 PE=2
SV=1
Length = 741
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 103 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPVN 151
G + A+Y ED ++Y A +EA+ +G V + +GN EEV +N+RP++
Sbjct: 648 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPIH 698
>sp|Q4R4F8|SMN_MACFA Survival motor neuron protein OS=Macaca fascicularis GN=SMN1 PE=2
SV=1
Length = 294
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 67 VSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-- 124
+ ET +P +K+NK++ + + ++ VG K A++SEDG Y ATI ++
Sbjct: 59 ICETSGKPKTTPKRKPAKKNKSQKKNTAAPLKQWKVGDKCSAIWSEDGCIYPATIASVDF 118
Query: 125 TPNGYYVTYDSWGNKEE 141
V Y +GN+EE
Sbjct: 119 KRETCVVVYTGYGNREE 135
>sp|Q8HYB8|SMN_FELCA Survival of motor neuron protein OS=Felis catus GN=SMN1 PE=2 SV=1
Length = 290
Score = 38.5 bits (88), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 67 VSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT- 125
+SE +P +K+NK++ + + ++ VG K A++SEDG Y ATI +I
Sbjct: 56 ISEASDKPKGTPKRKPAKKNKSQKKNTTAALKQWKVGDKCSAIWSEDGCVYPATIASIDF 115
Query: 126 -PNGYYVTYDSWGNKEE 141
V Y +GN+EE
Sbjct: 116 KRETCVVVYTGYGNREE 132
>sp|Q6P1U3|TDRD3_XENTR Tudor domain-containing protein 3 OS=Xenopus tropicalis GN=tdrd3
PE=2 SV=2
Length = 710
Score = 38.1 bits (87), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 103 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPV 150
G + A+Y ED ++Y A +EA+ +G V + +GN EEV N+RP+
Sbjct: 621 GDECLALYWEDNKYYRAEVEALHSSGTTAVVKFSDYGNYEEVLLENIRPI 670
>sp|Q6NYG6|TDRD3_DANRE Tudor domain-containing protein 3 OS=Danio rerio GN=tdrd3 PE=2 SV=1
Length = 733
Score = 38.1 bits (87), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 102 VGTKVQAVYSEDGEWYDATIEAITPNG--YYVTYDSWGNKEEVDPANVRPVNL 152
G + A+Y ED ++Y A I+A+ P+G V + +GN EEV +++P+++
Sbjct: 642 AGDQCLALYWEDNKFYRARIDAVHPSGSTAVVVFSDYGNCEEVLLDSIKPLHM 694
>sp|Q2HJG4|TDRD3_BOVIN Tudor domain-containing protein 3 OS=Bos taurus GN=TDRD3 PE=2 SV=1
Length = 722
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 103 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPV 150
G + A+Y ED ++Y A +EA+ +G V + +GN EEV +N+RP+
Sbjct: 630 GDECLALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIRPI 679
>sp|Q99MV1|TDRD1_MOUSE Tudor domain-containing protein 1 OS=Mus musculus GN=Tdrd1 PE=1
SV=2
Length = 1172
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 96 NQEKLAVGTKVQAVYSEDGEWYDATIEAITPNGYY-VTYDSWGNKEEV 142
N K +G A +S DG WY A ++ I P+G V + +GN EEV
Sbjct: 753 NGFKAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEEV 800
>sp|P25823|TUD_DROME Maternal protein tudor OS=Drosophila melanogaster GN=tud PE=1 SV=2
Length = 2515
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 102 VGTKVQAVYSEDGEWYDATIEAITPNGYYVTYDSWGNKEEVDPANVRPVNL-LVEAEKVA 160
+GT A +SEDG Y A + A+ Y V Y +GN E + +++ + L+E + A
Sbjct: 458 LGTACVARFSEDGHLYRAMVCAVYAQRYRVVYVDYGNSELLSASDLFQIPPELLEIKPFA 517
Query: 161 EATKLAIKRKIEQAAAS---DFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQ 217
LA ++IE S F+ ++ + PE V + + ++ + M E
Sbjct: 518 FRFALAGTKEIEPIDDSMKRIFKKSAIYRNFELTVQAPESVGSMQTCHLNQNGTNM-LEL 576
Query: 218 LEVTQNKRQN 227
L +N RQ+
Sbjct: 577 LRQLKNSRQS 586
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 95 DNQEKLAVGTKVQAVYSEDGEWYDATIEAITPNG--YYVTYDSWGNKEEV 142
D+ +K VG ++ AV S DG WY A I N + V Y +GN EE+
Sbjct: 1351 DSLKKFDVG-QICAVRSSDGNWYRARISGKDSNAACFEVFYIDYGNTEEI 1399
>sp|Q66HC1|TDRD3_RAT Tudor domain-containing protein 3 OS=Rattus norvegicus GN=Tdrd3
PE=2 SV=1
Length = 651
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 103 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPV 150
G + A+Y ED ++Y A +EA+ +G V + +GN EEV +N++PV
Sbjct: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPV 608
>sp|Q91W18|TDRD3_MOUSE Tudor domain-containing protein 3 OS=Mus musculus GN=Tdrd3 PE=1
SV=4
Length = 743
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 103 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPV 150
G + A+Y ED ++Y A +EA+ +G V + +GN EEV +N++PV
Sbjct: 651 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPV 700
>sp|Q9H7E2|TDRD3_HUMAN Tudor domain-containing protein 3 OS=Homo sapiens GN=TDRD3 PE=1
SV=1
Length = 651
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 103 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPV 150
G + A+Y ED ++Y A +EA+ +G V + +GN EEV +N++P+
Sbjct: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 608
>sp|Q8N5A5|ZGPAT_HUMAN Zinc finger CCCH-type with G patch domain-containing protein
OS=Homo sapiens GN=ZGPAT PE=1 SV=3
Length = 531
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEK---ELSEVIALTEELLATAKQNAI 65
E L S L TY+ QLQQV L +SE AD+ + +L E+I LTE L + +++++
Sbjct: 4 ESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSL 62
>sp|O35876|SMN_RAT Survival motor neuron protein OS=Rattus norvegicus GN=Smn1 PE=2
SV=1
Length = 289
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 102 VGTKVQAVYSEDGEWYDATIEAIT--PNGYYVTYDSWGNKEEVDPANVRPVNLLVEAEKV 159
G K AV+SEDG Y ATI ++ V Y +GNKEE + + +LL +V
Sbjct: 92 AGDKCSAVWSEDGCVYPATITSVDLKRETCVVVYTGYGNKEEQNLS-----DLLSPTCEV 146
Query: 160 AEATKLAIKRKIEQAAASD--FQSKSLPAKLH 189
A T+ + Q + D S+SL +K H
Sbjct: 147 ANNTEQNTQENESQVSTDDSEHSSRSLRSKAH 178
>sp|Q9UFH2|DYH17_HUMAN Dynein heavy chain 17, axonemal OS=Homo sapiens GN=DNAH17 PE=1 SV=2
Length = 4485
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 44 KELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTES-----GSISDNQE 98
+E+ E++ + + AKQN +S+ SA+P L + K+NK E+ G I++ +
Sbjct: 769 QEVREILHNLQNRMQKAKQNIEGISQAMKDWSANP-LFERKDNKKEALLDLDGRIANLNK 827
Query: 99 KLA----VGTKVQAVYSEDGEWYDATIEAITPNGYYVTYD 134
+ A G K+QA+ +E+ E + A ++ Y + D
Sbjct: 828 RYAAVRDAGVKIQAMVAENAELFRADTLSLPWKDYVIYID 867
>sp|O18870|SMN_BOVIN Survival motor neuron protein OS=Bos taurus GN=SMN1 PE=2 SV=2
Length = 287
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 82 QSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI--TPNGYYVTYDSWGNK 139
+S +NK++ + + ++ VG A++SEDG Y ATI +I V Y +GN+
Sbjct: 69 KSAKNKSQRKNTTSPSKQWKVGDNCCAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNR 128
Query: 140 EE 141
EE
Sbjct: 129 EE 130
>sp|O94519|SPF30_SCHPO Splicing factor spf30 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=spf30 PE=1 SV=1
Length = 311
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 16 LSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQN 63
L YK QL V+ L P N E +E +L E+I+LTE LL + +N
Sbjct: 5 LEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVEN 52
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 226 QNAWQQFQTTKGKTKKVGFFSGRKRESIFKSPDDPYGKVGVTGSGKGLTDFQKREKHLH 284
QN+W+QF KT +VG SIFKS +D G+ G + REKH++
Sbjct: 246 QNSWKQFAARGVKTGRVGKRKKIGESSIFKSTEDFPGRTNPKNFG-NVARSGHREKHIY 303
>sp|Q78PY7|SND1_MOUSE Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus
GN=Snd1 PE=1 SV=1
Length = 910
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 28/117 (23%)
Query: 43 EKELSEVIALTEELLATAKQNAISVSE-------------TGTSASASPNLLQSKENKTE 89
E+ + EV+ + EE +A + V+E TGT L+++ N
Sbjct: 663 ERPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLE---KLMENMRNDIS 719
Query: 90 S-----GSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNGYYVTYDSWGNKE 140
S GS + + + + V DGEWY A +E + +P +V Y +GN+E
Sbjct: 720 SHPPVEGSYAPRRGEFCIAKFV------DGEWYRARVEKVESPAKVHVFYIDYGNRE 770
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp
PE=1 SV=3
Length = 805
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 157 EKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFE 216
E A KLAI+ IE + ++ P+ + + DDP V +R F+ MRF
Sbjct: 689 EICQRACKLAIRESIENEIRRERDRQTNPSAMEVEEDDP--VPEIRRDH---FEEAMRFA 743
Query: 217 QLEVTQNKRQNAWQQFQTTKGKTKKVGFF 245
+ V+ N + ++ F T +++ G F
Sbjct: 744 RRSVSDNDIRK-YEMFAQTLQQSRGFGSF 771
>sp|Q66X93|SND1_RAT Staphylococcal nuclease domain-containing protein 1 OS=Rattus
norvegicus GN=Snd1 PE=2 SV=1
Length = 909
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 113 DGEWYDATIEAI-TPNGYYVTYDSWGNKE 140
DGEWY A +E + +P +V Y +GN+E
Sbjct: 741 DGEWYRARVEKVESPAKVHVFYIDYGNRE 769
>sp|Q5REU4|SND1_PONAB Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii
GN=SND1 PE=2 SV=1
Length = 910
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 113 DGEWYDATIEAI-TPNGYYVTYDSWGNKE 140
DGEWY A +E + +P +V Y +GN+E
Sbjct: 742 DGEWYRARVEKVESPAKIHVFYIDYGNRE 770
>sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens
GN=SND1 PE=1 SV=1
Length = 910
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 113 DGEWYDATIEAI-TPNGYYVTYDSWGNKE 140
DGEWY A +E + +P +V Y +GN+E
Sbjct: 742 DGEWYRARVEKVESPAKIHVFYIDYGNRE 770
>sp|Q863B3|SND1_BOVIN Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus
GN=SND1 PE=1 SV=1
Length = 910
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 113 DGEWYDATIEAI-TPNGYYVTYDSWGNKE 140
DGEWY A +E + +P +V Y +GN+E
Sbjct: 742 DGEWYRARVEKVESPAKVHVFYIDYGNRE 770
>sp|Q17QX2|ZGPAT_BOVIN Zinc finger CCCH-type with G patch domain-containing protein
OS=Bos taurus GN=ZGPAT PE=2 SV=1
Length = 513
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEK---ELSEVIALTEELLATAKQNAI 65
E L + L TY QLQQV L SE AD+ + +L E+I LTE L + +++ +
Sbjct: 4 ESLQTALRTYDAQLQQVELALGAGLDPSELADLRQLQGDLKELIELTEASLVSVRKSKL 62
>sp|Q1IWX3|GLMU_DEIGD Bifunctional protein GlmU OS=Deinococcus geothermalis (strain DSM
11300) GN=glmU PE=3 SV=1
Length = 481
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 15/151 (9%)
Query: 16 LSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSAS 75
L Y+++ QVR +HDP A+ +L++ A+ + TA A + ++
Sbjct: 208 LELYRQEGAQVRAFKLHDPDEVMGANDRVQLAQAAAVLRRRINTAHMQAGVTLQDPSTIQ 267
Query: 76 ASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAITPNGYYVTYDS 135
+ ++ E G I Q ++A G + A Y +++ G V S
Sbjct: 268 IEDTVTLGRDVTLEPGVILRGQTRVADGVTIGA--------YSVVTDSVLEEGVIVKPHS 319
Query: 136 ------WGNKEEVDP-ANVRPVNLLVEAEKV 159
G +V P A +RP +L E+ +
Sbjct: 320 VLEGAHVGKGSDVGPFARLRPGTVLEESVHI 350
>sp|C5IJB0|ZGPAT_SHEEP Zinc finger CCCH-type with G patch domain-containing protein
OS=Ovis aries GN=ZGPAT PE=2 SV=1
Length = 513
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 10 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEK---ELSEVIALTEELLATAKQNAIS 66
E L + L TY QLQQV L SE AD+ + +L E+I LTE L + +++ +
Sbjct: 4 ESLQTALRTYDAQLQQVELALGAGLDPSELADLRQLQGDLKELIELTEASLVSIRKSKLL 63
Query: 67 VSETG 71
+ G
Sbjct: 64 AALDG 68
>sp|B3SRX5|VP4_ROTWI Outer capsid protein VP4 OS=Rotavirus A (isolate Human/United
States/WI61/1983 G9-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
PE=3 SV=1
Length = 775
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 172 EQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQ 231
E SDF + + + H+NP D + + K+ + +++ LE+ ++ QN +
Sbjct: 94 ESTNNSDFWTAVVAVEPHVNPVDRQYTVFGENKQFNVRNDSDKWKFLEMFRSSSQNEFYN 153
Query: 232 FQTTKGKTKKVGF--FSGR 248
+T TK VG + GR
Sbjct: 154 RRTLTSHTKLVGILKYGGR 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.126 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,870,301
Number of Sequences: 539616
Number of extensions: 4591808
Number of successful extensions: 13774
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 13664
Number of HSP's gapped (non-prelim): 207
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)