BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022570
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|S Chain S, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|T Chain T, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|U Chain U, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|O Chain O, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|P Chain P, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|Q Chain Q, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|Y Chain Y, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|Z Chain Z, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|AA Chain a, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|BB Chain b, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|V Chain V, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|W Chain W, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|X Chain X, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|M Chain M, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|L Chain L, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|K Chain K, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|J Chain J, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|I Chain I, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|H Chain H, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|N Chain N, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|F Chain F, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|E Chain E, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|D Chain D, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|C Chain C, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|B Chain B, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|A Chain A, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 pdb|3MT6|G Chain G, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
          Length = 207

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 113/210 (53%), Gaps = 14/210 (6%)

Query: 65  DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
           D+F    P   ++ MVI  TS     +   D+ S L K R+++L       +  LI+A+ 
Sbjct: 8   DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61

Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXX 184
           L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G      
Sbjct: 62  LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113

Query: 185 XXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
                          P+S +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173

Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           + EQIE D  R ++ S  EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203


>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|B Chain B, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|C Chain C, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|D Chain D, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|E Chain E, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|F Chain F, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|G Chain G, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|H Chain H, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|I Chain I, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|J Chain J, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|K Chain K, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|L Chain L, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|M Chain M, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|N Chain N, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|O Chain O, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|P Chain P, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|Q Chain Q, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|R Chain R, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|S Chain S, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|T Chain T, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|U Chain U, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|V Chain V, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|W Chain W, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|X Chain X, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|Y Chain Y, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|Z Chain Z, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|AA Chain a, The Structure Of A V6a Variant Of Clpp.
 pdb|1YG8|BB Chain b, The Structure Of A V6a Variant Of Clpp
          Length = 193

 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 101/180 (56%), Gaps = 8/180 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   +IYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ 129

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct: 130 GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189


>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 pdb|1YG6|A Chain A, Clpp
 pdb|1YG6|B Chain B, Clpp
 pdb|1YG6|C Chain C, Clpp
 pdb|1YG6|D Chain D, Clpp
 pdb|1YG6|E Chain E, Clpp
 pdb|1YG6|F Chain F, Clpp
 pdb|1YG6|G Chain G, Clpp
 pdb|1YG6|H Chain H, Clpp
 pdb|1YG6|I Chain I, Clpp
 pdb|1YG6|J Chain J, Clpp
 pdb|1YG6|K Chain K, Clpp
 pdb|1YG6|L Chain L, Clpp
 pdb|1YG6|M Chain M, Clpp
 pdb|1YG6|N Chain N, Clpp
 pdb|2FZS|A Chain A, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|B Chain B, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|C Chain C, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|D Chain D, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|E Chain E, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|F Chain F, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|G Chain G, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|H Chain H, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|I Chain I, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|J Chain J, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|K Chain K, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|L Chain L, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|M Chain M, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 pdb|2FZS|N Chain N, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
          Length = 193

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 101/180 (56%), Gaps = 8/180 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   +IYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ 129

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct: 130 GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189


>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
          Length = 193

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 101/180 (56%), Gaps = 8/180 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   +IYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ 129

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct: 130 GQATDIEIHCREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189


>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role
           For The N- Terminus Of Human Mitochondrial Clpp
 pdb|1TG6|B Chain B, Crystallography And Mutagenesis Point To An Essential Role
           For The N- Terminus Of Human Mitochondrial Clpp
 pdb|1TG6|C Chain C, Crystallography And Mutagenesis Point To An Essential Role
           For The N- Terminus Of Human Mitochondrial Clpp
 pdb|1TG6|D Chain D, Crystallography And Mutagenesis Point To An Essential Role
           For The N- Terminus Of Human Mitochondrial Clpp
 pdb|1TG6|E Chain E, Crystallography And Mutagenesis Point To An Essential Role
           For The N- Terminus Of Human Mitochondrial Clpp
 pdb|1TG6|F Chain F, Crystallography And Mutagenesis Point To An Essential Role
           For The N- Terminus Of Human Mitochondrial Clpp
 pdb|1TG6|G Chain G, Crystallography And Mutagenesis Point To An Essential Role
           For The N- Terminus Of Human Mitochondrial Clpp
          Length = 277

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 98/180 (54%), Gaps = 8/180 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L + RIV +      SV  L++A+ L+LQ E  +KPI++YINS G        G 
Sbjct: 74  DIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG--------GV 125

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   AIYD M Y+  PI T CVG                     P+S IMI QP G   
Sbjct: 126 VTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR 185

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQATD+ I  +E+  +K +L  +YAKH  ++ + IE+ + R +Y SP EA E+GI+DKVL
Sbjct: 186 GQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 245


>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
 pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
 pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
 pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
 pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
 pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
 pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
 pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
          Length = 199

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 104/190 (54%), Gaps = 9/190 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 69

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQ 129

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQAT++EIA K +  ++ +L K+ A+  G+  E IE D  R  + S  EA+EYG+IDK+L
Sbjct: 130 GQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189

Query: 275 -YTEKSPEDH 283
            +TE     H
Sbjct: 190 THTEDKKHHH 199


>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From
           Staphylococcus Aureus
 pdb|3ST9|B Chain B, Crystal Structure Of Clpp In Heptameric Form From
           Staphylococcus Aureus
 pdb|3ST9|C Chain C, Crystal Structure Of Clpp In Heptameric Form From
           Staphylococcus Aureus
 pdb|3ST9|D Chain D, Crystal Structure Of Clpp In Heptameric Form From
           Staphylococcus Aureus
 pdb|3ST9|E Chain E, Crystal Structure Of Clpp In Heptameric Form From
           Staphylococcus Aureus
 pdb|3ST9|F Chain F, Crystal Structure Of Clpp In Heptameric Form From
           Staphylococcus Aureus
 pdb|3ST9|G Chain G, Crystal Structure Of Clpp In Heptameric Form From
           Staphylococcus Aureus
 pdb|3STA|V Chain V, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|A Chain A, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|B Chain B, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|C Chain C, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|E Chain E, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|F Chain F, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|G Chain G, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|I Chain I, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|K Chain K, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|L Chain L, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|M Chain M, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|N Chain N, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|S Chain S, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
 pdb|3STA|T Chain T, Crystal Structure Of Clpp In Tetradecameric Form From
           Staphylococcus Aureus
          Length = 197

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 8/183 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 21  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 72

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T  FAIYD + ++KP + T+C+G                     P++ +MI QP+G  +
Sbjct: 73  VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 132

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQAT++EIA   +   + +L ++ ++  G++ E+I+ D  R  + +  EA EYG+ID+V+
Sbjct: 133 GQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 192

Query: 275 YTE 277
             E
Sbjct: 193 VPE 195


>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3QWD|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus
 pdb|3V5E|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
 pdb|3V5E|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus In
           The Active, Extended Conformation
          Length = 203

 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 8/183 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T  FAIYD + ++KP + T+C+G                     P++ +MI QP+G  +
Sbjct: 71  VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 130

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQAT++EIA   +   + +L ++ ++  G++ E+I+ D  R  + +  EA EYG+ID+V+
Sbjct: 131 GQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190

Query: 275 YTE 277
             E
Sbjct: 191 VPE 193


>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|B Chain B, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|C Chain C, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|D Chain D, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|E Chain E, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|F Chain F, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|G Chain G, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|H Chain H, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|I Chain I, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|J Chain J, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|K Chain K, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|L Chain L, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|M Chain M, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|N Chain N, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|O Chain O, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|P Chain P, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|Q Chain Q, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|R Chain R, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|S Chain S, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|T Chain T, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|U Chain U, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|V Chain V, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|W Chain W, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|X Chain X, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|Y Chain Y, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|Z Chain Z, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|AA Chain a, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
 pdb|3V5I|BB Chain b, The Crystal Structure Of The Mutant Clpp S98a
           (Staphylococcus Aureus)
          Length = 203

 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 8/183 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T  FAIYD + ++KP + T+C+G                     P++ +MI QP+G  +
Sbjct: 71  VTAGFAIYDTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 130

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQAT++EIA   +   + +L ++ ++  G++ E+I+ D  R  + +  EA EYG+ID+V+
Sbjct: 131 GQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190

Query: 275 YTE 277
             E
Sbjct: 191 VPE 193


>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
 pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
          Length = 196

 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 96/180 (53%), Gaps = 8/180 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV L      SV   I+A+ L+L+ ED EK I LYINS G        G 
Sbjct: 20  DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPG--------GV 71

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   +IYD M +++P + T+C+G                     P S IMI QP+G  +
Sbjct: 72  ITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQ 131

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQA+D+EI   E+  +K  +  + A++ G++ EQI  D  R  Y S  EA EYG+IDKVL
Sbjct: 132 GQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVL 191


>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
 pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
          Length = 196

 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 96/180 (53%), Gaps = 8/180 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV L      SV   I+A+ L+L+ ED EK I LYINS G        G 
Sbjct: 20  DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPG--------GV 71

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   +IYD M +++P + T+C+G                     P S IMI QP+G  +
Sbjct: 72  ITSGLSIYDTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQ 131

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQA+D+EI   E+  +K  +  + A++ G++ EQI  D  R  Y S  EA EYG+IDKVL
Sbjct: 132 GQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVL 191


>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
           Dfp
 pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
           Dfp
 pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
           Dfp
 pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
           Dfp
 pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
           Dfp
 pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
           Dfp
 pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
           Dfp
          Length = 197

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 103/184 (55%), Gaps = 9/184 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 71  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQ 130

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQAT++EIA K +  ++ +L K+ A+  G+  E IE D  R  + S  EA+EYG+IDK+L
Sbjct: 131 GQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190

Query: 275 -YTE 277
            +TE
Sbjct: 191 THTE 194


>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
           State
 pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
           State
 pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
           State
 pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
           State
 pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
           State
 pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
           State
 pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
           State
          Length = 196

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 103/184 (55%), Gaps = 9/184 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 69

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQ 129

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQAT++EIA K +  ++ +L K+ A+  G+  E IE D  R  + S  EA+EYG+IDK+L
Sbjct: 130 GQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189

Query: 275 -YTE 277
            +TE
Sbjct: 190 THTE 193


>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
          Length = 199

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 100/180 (55%), Gaps = 8/180 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 69

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQ 129

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQAT++EIA K +  ++ +L K+ A+  G+  E IE D  R  + S  EA+EYG+IDK+L
Sbjct: 130 GQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189


>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|B Chain B, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|C Chain C, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|D Chain D, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|E Chain E, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|F Chain F, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|G Chain G, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|H Chain H, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|I Chain I, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|J Chain J, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|K Chain K, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|L Chain L, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|M Chain M, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 pdb|3Q7H|N Chain N, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
          Length = 195

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 94/180 (52%), Gaps = 8/180 (4%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+R+++L          L +A+ L+L+ E+  K I LYINS G        G 
Sbjct: 20  DIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINLYINSPG--------GA 71

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T A AIYD   +VKP + TLC+G                     P S++ I Q +G  +
Sbjct: 72  VTSAXAIYDTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQ 131

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           GQ TD++I  K+ + V  +L ++ AKH GK  E++E D  R  + +P EAVEYG+ID + 
Sbjct: 132 GQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSIF 191


>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 pdb|3P2L|B Chain B, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 pdb|3P2L|C Chain C, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 pdb|3P2L|D Chain D, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 pdb|3P2L|E Chain E, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 pdb|3P2L|F Chain F, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 pdb|3P2L|G Chain G, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
          Length = 201

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 92/193 (47%), Gaps = 8/193 (4%)

Query: 87  TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT 146
           TA  +   D+ S L K RIV+L          L++A+ L+L+ ED +K IY YINS G  
Sbjct: 14  TAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGX 73

Query: 147 KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMI 206
                  Y+T  F        +KP + T+C+G                     PSS I I
Sbjct: 74  VTAGXGVYDTXQF--------IKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXI 125

Query: 207 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 266
            QP+G   GQA+D+EI  K +  +K  L K+ A H G+  E I  D  R  +    EA  
Sbjct: 126 HQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFXXADEAKA 185

Query: 267 YGIIDKVLYTEKS 279
           YG+ID V+ + ++
Sbjct: 186 YGLIDHVIESREA 198


>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium
           Falciparum
 pdb|4GM2|B Chain B, The Crystal Structure Of A Peptidase From Plasmodium
           Falciparum
 pdb|4GM2|C Chain C, The Crystal Structure Of A Peptidase From Plasmodium
           Falciparum
 pdb|4GM2|D Chain D, The Crystal Structure Of A Peptidase From Plasmodium
           Falciparum
 pdb|4GM2|E Chain E, The Crystal Structure Of A Peptidase From Plasmodium
           Falciparum
 pdb|4GM2|F Chain F, The Crystal Structure Of A Peptidase From Plasmodium
           Falciparum
 pdb|4GM2|G Chain G, The Crystal Structure Of A Peptidase From Plasmodium
           Falciparum
          Length = 205

 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 3/183 (1%)

Query: 98  SYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE-- 155
           S L   RI++L     P ++E I+++ LYL+YE   KPI+LYINSTG     + +     
Sbjct: 23  SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI 82

Query: 156 TEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRI-E 214
           T+  +I DV+ Y+   ++T C+G                      +S+  + Q    I  
Sbjct: 83  TDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPF 142

Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
            QAT++EI  KE+ N K +++++ +K+  K    I   + R KYF+  EAV++ +ID +L
Sbjct: 143 NQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHIL 202

Query: 275 YTE 277
             E
Sbjct: 203 EKE 205


>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme
 pdb|4HNK|B Chain B, Crystal Structure Of An Enzyme
 pdb|4HNK|C Chain C, Crystal Structure Of An Enzyme
 pdb|4HNK|D Chain D, Crystal Structure Of An Enzyme
 pdb|4HNK|E Chain E, Crystal Structure Of An Enzyme
 pdb|4HNK|F Chain F, Crystal Structure Of An Enzyme
 pdb|4HNK|G Chain G, Crystal Structure Of An Enzyme
 pdb|4HNK|H Chain H, Crystal Structure Of An Enzyme
 pdb|4HNK|I Chain I, Crystal Structure Of An Enzyme
 pdb|4HNK|J Chain J, Crystal Structure Of An Enzyme
 pdb|4HNK|K Chain K, Crystal Structure Of An Enzyme
 pdb|4HNK|L Chain L, Crystal Structure Of An Enzyme
 pdb|4HNK|M Chain M, Crystal Structure Of An Enzyme
 pdb|4HNK|N Chain N, Crystal Structure Of An Enzyme
          Length = 219

 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 3/186 (1%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           ++ S L   RI++L     P ++E I+++ LYL+YE   KPI+LYINSTG     + +  
Sbjct: 34  NIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINL 93

Query: 155 E--TEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGR 212
              T+  +I DV+ Y+   ++T C+G                      +S+  + Q    
Sbjct: 94  NGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSI 153

Query: 213 I-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIID 271
           I   QAT++EI  KE+ N K +++++ +K+  K    I   + R KYF+  EAV++ +ID
Sbjct: 154 IPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLID 213

Query: 272 KVLYTE 277
            +L  E
Sbjct: 214 HILEKE 219


>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|H Chain H, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|I Chain I, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|J Chain J, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|K Chain K, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|L Chain L, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|M Chain M, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CE3|N Chain N, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
          Length = 200

 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 100 LYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAF 159
           L   RI++LG      +   + A+ L L  ED  K I LYINS G        G  +   
Sbjct: 24  LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISAGM 75

Query: 160 AIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATD 219
           AIYD M      I T  +G                     P + I++ QP+G + G A D
Sbjct: 76  AIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAAD 135

Query: 220 VEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           + I  ++   +K E+ +L A+  G+  E+IEAD  R ++F+ +EA+EYG +D ++
Sbjct: 136 IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 190


>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|B Chain B, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|C Chain C, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|D Chain D, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|E Chain E, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|F Chain F, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|G Chain G, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|H Chain H, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|I Chain I, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|J Chain J, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|K Chain K, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|L Chain L, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|M Chain M, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 pdb|2C8T|N Chain N, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
          Length = 206

 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 100 LYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAF 159
           L   RI++LG      +   + A+ L L  ED  K I LYINS G        G  +   
Sbjct: 25  LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISAGM 76

Query: 160 AIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATD 219
           AIYD M      I T  +G                     P + I++ QP+G + G A D
Sbjct: 77  AIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAAD 136

Query: 220 VEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           + I  ++   +K E+ +L A+  G+  E+IEAD  R ++F+ +EA+EYG +D ++
Sbjct: 137 IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 191


>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CBY|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CBY|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CBY|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CBY|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CBY|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 pdb|2CBY|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
          Length = 208

 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 100 LYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAF 159
           L   RI++LG      +   + A+ L L  ED  K I LYINS G        G  +   
Sbjct: 24  LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISAGM 75

Query: 160 AIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATD 219
           AIYD M      I T  +G                     P + I++ QP+G + G A D
Sbjct: 76  AIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAAD 135

Query: 220 VEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
           + I  ++   +K E+ +L A+  G+  E+IEAD  R ++F+ +EA+EYG +D ++
Sbjct: 136 IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 190


>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 pdb|2F6I|B Chain B, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 pdb|2F6I|C Chain C, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 pdb|2F6I|D Chain D, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 pdb|2F6I|E Chain E, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 pdb|2F6I|F Chain F, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 pdb|2F6I|G Chain G, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
          Length = 215

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 9/195 (4%)

Query: 83  FTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINS 142
           F      +    D+  + +K RI+YL         + ++++ LYL   +    I +YINS
Sbjct: 19  FQGHMDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINS 77

Query: 143 TGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSS 202
            G        G   E  AI D+  Y+K  I T+  G                     P+ 
Sbjct: 78  PG--------GSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNC 129

Query: 203 TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPS 262
            IMI QP+G   G   D+EI  KE+  +K  L    +    +T E IE D  R  Y +  
Sbjct: 130 RIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNAL 189

Query: 263 EAVEYGIIDKVLYTE 277
           EA +YGIID+V+ T+
Sbjct: 190 EAKQYGIIDEVIETK 204


>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp
 pdb|1Y7O|B Chain B, The Structure Of Streptococcus Pneumoniae A153p Clpp
 pdb|1Y7O|C Chain C, The Structure Of Streptococcus Pneumoniae A153p Clpp
 pdb|1Y7O|D Chain D, The Structure Of Streptococcus Pneumoniae A153p Clpp
 pdb|1Y7O|E Chain E, The Structure Of Streptococcus Pneumoniae A153p Clpp
 pdb|1Y7O|F Chain F, The Structure Of Streptococcus Pneumoniae A153p Clpp
 pdb|1Y7O|G Chain G, The Structure Of Streptococcus Pneumoniae A153p Clpp
          Length = 218

 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 10/181 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ L      +    ++A+ L+L  +D  K IYLY+N+ G        G 
Sbjct: 37  DIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYLYVNTPG--------GS 88

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            +   AI D   ++K  + T+  G                     P++   I QP G   
Sbjct: 89  VSAGLAIVDTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXIHQPXGGTG 148

Query: 215 GQAT--DVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDK 272
           G     D+ IA + +   +  L K+ A++ G++ E++ AD  R  + S  E +EYG ID+
Sbjct: 149 GGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSXEKVHADAERDNWXSAQETLEYGFIDE 208

Query: 273 V 273
           +
Sbjct: 209 I 209


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,305,951
Number of Sequences: 62578
Number of extensions: 332764
Number of successful extensions: 785
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 23
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)