BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022570
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4,
chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1
Length = 305
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 205/257 (79%), Positives = 231/257 (89%)
Query: 39 FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
F+SP+ GS+SSD G +LR + LNP +F SKP+ V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49 FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108
Query: 99 YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
YL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168
Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQAT 218
FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQAT
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228
Query: 219 DVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278
DVEIARKE+K++K E+VKLY+KH GK+PEQIEAD++RPKYFSP+EAVEYGIIDKV+Y E+
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNER 288
Query: 279 SPEDHGVVSDLKKAQLI 295
+D GVVSDLKKAQLI
Sbjct: 289 GSQDRGVVSDLKKAQLI 305
>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR
PE=3 SV=1
Length = 225
Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 138/198 (69%), Gaps = 11/198 (5%)
Query: 88 AWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIY 137
A++ PPPDL S L K RIVYLGM S VT+LI+A+ LYLQ++D +KPIY
Sbjct: 15 AFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIY 74
Query: 138 LYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR 196
YINSTGT+ G+ +G+ETEAFAI D + Y+KPP+ T+C+G A G AA++L +G KG R
Sbjct: 75 FYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYR 134
Query: 197 AALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP 256
A+LP +TI++ Q +GQATD++I KE+ + K ++++ + + G+T E++ D+ R
Sbjct: 135 ASLPHATIVLNQNRTGAQGQATDIQIRAKEVISNKQTMLEILSLNTGQTQEKLAKDMDRT 194
Query: 257 KYFSPSEAVEYGIIDKVL 274
Y +P++A EYG+ID+VL
Sbjct: 195 FYLTPAQAKEYGLIDRVL 212
>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechococcus elongatus (strain PCC 7942) GN=clpR
PE=3 SV=1
Length = 228
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/189 (47%), Positives = 131/189 (69%), Gaps = 11/189 (5%)
Query: 102 KNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGE 150
K RI+YLGM S VTELI+A+ LYL++++ EKPIY YINSTGT+ G+
Sbjct: 31 KERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGD 90
Query: 151 KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210
+GYETEAFAI D M Y+KPP+ T+C+G A G AA++L G GNRA+LP +TI++ QP
Sbjct: 91 AIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQPR 150
Query: 211 GRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGII 270
+GQA+D++I KE+ K +++++A++ G+ P+++ D R Y +P++AVEYG+I
Sbjct: 151 TGAQGQASDIQIRAKEVLANKRTMLEIFARNTGQDPDRLARDTDRMLYMTPAQAVEYGLI 210
Query: 271 DKVLYTEKS 279
D+VL + K
Sbjct: 211 DRVLDSRKD 219
>sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3,
chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1
Length = 330
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 125/187 (66%), Gaps = 3/187 (1%)
Query: 92 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGE 150
PPPDL S L RIVY+GM VP+VTEL++AE +YLQ+ D ++PIY+YINSTGTT+ GE
Sbjct: 118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGE 177
Query: 151 KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210
+G E+E FAIYD + +K + T+CVG A G+A LLL AG KG R +P + MI+QP
Sbjct: 178 TVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPR 237
Query: 211 GRIEG--QATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 268
G A+DV I KE+ + LV+L +KH G + E + +RRP Y +A E+G
Sbjct: 238 VPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFG 297
Query: 269 IIDKVLY 275
+ID++L+
Sbjct: 298 VIDRILW 304
>sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1,
chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1
Length = 387
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 120/189 (63%), Gaps = 2/189 (1%)
Query: 93 PPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TKGGEK 151
PPDL S L RI YLGM VP+VTEL++A+F++L Y++ KPIYLYINS GT + E
Sbjct: 169 PPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMET 228
Query: 152 LGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP-I 210
+G ETEA+AI D + Y K ++T+ G A+G+AA+LL G KG RA P S+ + P +
Sbjct: 229 VGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKV 288
Query: 211 GRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGII 270
R G A D+ I KE+ ++L AK GK+ EQI DI+RPKY A++YGI
Sbjct: 289 NRSSGAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQAAIDYGIA 348
Query: 271 DKVLYTEKS 279
DK+ ++ S
Sbjct: 349 DKIADSQDS 357
>sp|Q7NEW1|CLPP2_GLOVI ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter
violaceus (strain PCC 7421) GN=clpP2 PE=3 SV=1
Length = 218
Score = 164 bits (416), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYD 163
RIVYLG V EL++A+ LYL+ ED KPI +YINS G G+ET AFA+YD
Sbjct: 37 RIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVA------GFETSAFAVYD 90
Query: 164 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIA 223
M +V+ PI T+C+G A G +ALL+ AG KG R +LP+S I++ QP G GQATD+ I
Sbjct: 91 TMRHVRMPIKTICLGLAGGFSALLMAAGTKGQRMSLPNSRIILYQPYGGARGQATDINIR 150
Query: 224 RKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+E+ K L +L + H GKT EQI+ D R Y SP EAV YG+IDKVL
Sbjct: 151 AQELLTTKRTLNQLLSIHTGKTVEQIDKDTERLFYMSPQEAVSYGLIDKVL 201
>sp|Q6D827|CLPP_ERWCT ATP-dependent Clp protease proteolytic subunit OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=clpP PE=3 SV=1
Length = 207
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 124/206 (60%), Gaps = 8/206 (3%)
Query: 69 KSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQ 128
+ + ++P + +V TA + D+ S L K RI++L + L++A+ L+L+
Sbjct: 6 EQERQAPHMALVPMVVEQTARGERSYDIYSRLLKERIIFLTGQVEDYMANLVVAQMLFLE 65
Query: 129 YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 188
E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL
Sbjct: 66 AENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLL 117
Query: 189 GAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQ 248
AGAKG R LP+S +MI QP+G +GQATD+EI KE+ VKA++ +L AKH G+ E
Sbjct: 118 TAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEA 177
Query: 249 IEADIRRPKYFSPSEAVEYGIIDKVL 274
IE D R ++ S SEAVEYG++D V
Sbjct: 178 IERDTERDRFLSASEAVEYGLVDSVF 203
>sp|Q60107|CLPP_YEREN ATP-dependent Clp protease proteolytic subunit OS=Yersinia
enterocolitica GN=clpP PE=3 SV=1
Length = 207
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MV+ TS + D+ S L K RI++L + LI A+ L+L+ E+
Sbjct: 12 PNMALVPMVVEQTS---RGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK I+LYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIFLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI KE+ VK+ + +L AKH GK+ E+IE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D V
Sbjct: 181 DTERDRFLSADEAVEYGLVDSVF 203
>sp|A1JNN2|CLPP_YERE8 ATP-dependent Clp protease proteolytic subunit OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=clpP PE=3 SV=1
Length = 207
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MV+ TS + D+ S L K RI++L + LI A+ L+L+ E+
Sbjct: 12 PNMALVPMVVEQTS---RGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK I+LYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIFLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI KE+ VK+ + +L AKH GK+ E+IE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D V
Sbjct: 181 DTERDRFLSADEAVEYGLVDSVF 203
>sp|C4XH03|CLPP_DESMR ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio
magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
GN=clpP PE=3 SV=1
Length = 202
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 8/187 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L ++RI+ LG + V LI A+ L+L+ ED EK I++YINS G G
Sbjct: 19 DIYSRLLRDRIILLGSAVDDYVANLICAQLLFLESEDPEKEIFMYINSPG--------GV 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
+ AIYD M YV PP+ TLC+G A ALLL AGA G R ALP S IMI QP G +
Sbjct: 71 VSAGLAIYDTMQYVMPPVSTLCLGQAASMGALLLCAGATGMRYALPHSRIMIHQPSGGYQ 130
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
GQATD+EI KE + + L ++ AKH G++ E+I+ D R + S EAV YG+IDKVL
Sbjct: 131 GQATDIEIHAKETRRTRETLNEIMAKHTGQSMERIQVDTERDNFMSAEEAVAYGLIDKVL 190
Query: 275 YTEKSPE 281
+ + E
Sbjct: 191 TSRERLE 197
>sp|Q9X5N0|CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus GN=clpP2 PE=3 SV=1
Length = 206
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 113/179 (63%), Gaps = 8/179 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV LG V +I+A+ L+L+ ED +K I LYINS G G
Sbjct: 21 DIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GS 72
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M YVK P+ T+CVG A A+LL AGAKG R ALPSS IMI QP+G +
Sbjct: 73 VTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVR 132
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 273
GQATD+EI KE+ +KA+L +L KH G++ E++E D R + SEA YGIID++
Sbjct: 133 GQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEI 191
>sp|O67357|CLPP_AQUAE ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus
(strain VF5) GN=clpP PE=3 SV=1
Length = 201
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 114/180 (63%), Gaps = 8/180 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L ++RIV LG V LI+A+ L+L+ +D +K IYLYINS G G
Sbjct: 26 DIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYLYINSPG--------GS 77
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M Y+KP + T+C+G A A+LL AGA G R ALP S IMI QP+G I+
Sbjct: 78 VTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPGKRYALPHSRIMIHQPLGGIQ 137
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
GQATD+ I +E+K +K L+ + AKH G+ ++I DI R + SP EA +YG+IDKV+
Sbjct: 138 GQATDIIIHAEEIKRIKEMLIDILAKHTGQPKDKIANDIERDYFMSPYEAKDYGLIDKVI 197
>sp|B4EU53|CLPP_PROMH ATP-dependent Clp protease proteolytic subunit OS=Proteus mirabilis
(strain HI4320) GN=clpP PE=3 SV=1
Length = 207
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 127/208 (61%), Gaps = 12/208 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MVI TS + D+ S L K RI++L + LI+A+ L+L+ E+
Sbjct: 12 PNMALVPMVIEQTS---RGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK I LYINS G G T +IYD M Y+K + T+C+G A A LL AG
Sbjct: 69 PEKDINLYINSPG--------GVITAGMSIYDTMQYIKADVSTICMGQACSMGAFLLSAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD++I +E+ VK+ + +L A+H GK+ E+IE
Sbjct: 121 AKGKRICLPNSRVMIHQPLGGYQGQATDIQIHAQEILKVKSRMNELMAQHTGKSIEEIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVLYTEKS 279
D R ++ S +EA+EYG++DKV YT++S
Sbjct: 181 DTERDRFLSANEALEYGLVDKV-YTQRS 207
>sp|Q1DAT0|CLPP1_MYXXD ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1
Length = 206
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 113/179 (63%), Gaps = 8/179 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV LG V +I+A+ L+L+ ED +K I LYINS G G
Sbjct: 21 DIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GS 72
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M YVK P+ T+CVG A A+LL AGAKG R ALPSS IMI QP+G +
Sbjct: 73 VTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVR 132
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 273
GQATD+EI KE+ +KA+L +L KH G++ E++E D R + SEA YGIID++
Sbjct: 133 GQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEI 191
>sp|P0A1D7|CLPP_SALTY ATP-dependent Clp protease proteolytic subunit OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MVI TS + D+ S L K R+++L + LI+A+ L+L+ E+
Sbjct: 12 PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G++ EQIE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D +L
Sbjct: 181 DTERDRFLSAPEAVEYGLVDSIL 203
>sp|P0A1D8|CLPP_SALTI ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi
GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MVI TS + D+ S L K R+++L + LI+A+ L+L+ E+
Sbjct: 12 PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G++ EQIE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D +L
Sbjct: 181 DTERDRFLSAPEAVEYGLVDSIL 203
>sp|B4TMC6|CLPP_SALSV ATP-dependent Clp protease proteolytic subunit OS=Salmonella
schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MVI TS + D+ S L K R+++L + LI+A+ L+L+ E+
Sbjct: 12 PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G++ EQIE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D +L
Sbjct: 181 DTERDRFLSAPEAVEYGLVDSIL 203
>sp|B4SWU1|CLPP_SALNS ATP-dependent Clp protease proteolytic subunit OS=Salmonella
newport (strain SL254) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MVI TS + D+ S L K R+++L + LI+A+ L+L+ E+
Sbjct: 12 PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G++ EQIE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D +L
Sbjct: 181 DTERDRFLSAPEAVEYGLVDSIL 203
>sp|B4T9E3|CLPP_SALHS ATP-dependent Clp protease proteolytic subunit OS=Salmonella
heidelberg (strain SL476) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MVI TS + D+ S L K R+++L + LI+A+ L+L+ E+
Sbjct: 12 PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G++ EQIE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D +L
Sbjct: 181 DTERDRFLSAPEAVEYGLVDSIL 203
>sp|B5QTJ6|CLPP_SALEP ATP-dependent Clp protease proteolytic subunit OS=Salmonella
enteritidis PT4 (strain P125109) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MVI TS + D+ S L K R+++L + LI+A+ L+L+ E+
Sbjct: 12 PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G++ EQIE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D +L
Sbjct: 181 DTERDRFLSAPEAVEYGLVDSIL 203
>sp|Q57SB5|CLPP_SALCH ATP-dependent Clp protease proteolytic subunit OS=Salmonella
choleraesuis (strain SC-B67) GN=clpP PE=3 SV=2
Length = 207
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MVI TS + D+ S L K R+++L + LI+A+ L+L+ E+
Sbjct: 12 PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G++ EQIE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D +L
Sbjct: 181 DTERDRFLSAPEAVEYGLVDSIL 203
>sp|B5BD83|CLPP_SALPK ATP-dependent Clp protease proteolytic subunit OS=Salmonella
paratyphi A (strain AKU_12601) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MVI TS + D+ S L K R+++L + LI+A+ L+L+ E+
Sbjct: 12 PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIYLYINSPG--------GVITAGISIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G++ EQIE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D +L
Sbjct: 181 DTERDRFLSAPEAVEYGLVDSIL 203
>sp|Q5PFN4|CLPP_SALPA ATP-dependent Clp protease proteolytic subunit OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=clpP PE=3
SV=1
Length = 207
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 11/203 (5%)
Query: 72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
P ++ MVI TS + D+ S L K R+++L + LI+A+ L+L+ E+
Sbjct: 12 PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68
Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL AG
Sbjct: 69 PEKDIYLYINSPG--------GVITAGISIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120
Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251
AKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G++ EQIE
Sbjct: 121 AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIER 180
Query: 252 DIRRPKYFSPSEAVEYGIIDKVL 274
D R ++ S EAVEYG++D +L
Sbjct: 181 DTERDRFLSAPEAVEYGLVDSIL 203
>sp|B9DJL4|CLPP_STACT ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
carnosus (strain TM300) GN=clpP PE=3 SV=1
Length = 194
Score = 160 bits (405), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 117/184 (63%), Gaps = 8/184 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG + +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI QP+G +
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 130
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
GQAT++EIA + +A+L K+ A+ G++ EQIE D R + + EA EYG+ID+V+
Sbjct: 131 GQATEIEIAATHILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTADEAKEYGLIDEVM 190
Query: 275 YTEK 278
EK
Sbjct: 191 QPEK 194
>sp|A7HZE8|CLPP_CAMHC ATP-dependent Clp protease proteolytic subunit OS=Campylobacter
hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 /
CH001A) GN=clpP PE=3 SV=1
Length = 195
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 121/202 (59%), Gaps = 11/202 (5%)
Query: 79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M +P+ T+ + D+ S L K+RIV L V ++A+ L+L+ ED +K IY
Sbjct: 1 MFVPYVIERTSRGERSYDIYSRLLKDRIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIY 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T F+IYD M Y+KP + T+C+G A A LL G KG R
Sbjct: 61 LYINSPG--------GVVTSGFSIYDTMNYIKPAVSTICIGQAASMGAFLLSCGEKGKRY 112
Query: 198 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPK 257
ALP++ IMI QP+G +GQATD+EI KE+ +KA L K+ A++ G+ +IE D R
Sbjct: 113 ALPNARIMIHQPLGGAQGQATDIEITTKEILRIKATLNKILAENSGQKLSKIEKDTDRDF 172
Query: 258 YFSPSEAVEYGIIDKVLYTEKS 279
Y S EAV+YG+IDKVL EKS
Sbjct: 173 YMSAQEAVKYGLIDKVL--EKS 192
>sp|Q3Z4W6|CLPP_SHISS ATP-dependent Clp protease proteolytic subunit OS=Shigella sonnei
(strain Ss046) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|P0A6H0|CLPP_SHIFL ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri
GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|Q0T7E6|CLPP_SHIF8 ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri
serotype 5b (strain 8401) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|Q32JJ3|CLPP_SHIDS ATP-dependent Clp protease proteolytic subunit OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|Q325G4|CLPP_SHIBS ATP-dependent Clp protease proteolytic subunit OS=Shigella boydii
serotype 4 (strain Sb227) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|Q1RF98|CLPP_ECOUT ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
(strain UTI89 / UPEC) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|P0A6G7|CLPP_ECOLI ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
(strain K12) GN=clpP PE=1 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|B1J011|CLPP_ECOLC ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|P0A6G8|CLPP_ECOL6 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=clpP PE=3
SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|Q0TKK4|CLPP_ECOL5 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|A1A8A6|CLPP_ECOK1 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O1:K1 / APEC GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|A7ZX95|CLPP_ECOHS ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O9:H4 (strain HS) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|P0A6G9|CLPP_ECO57 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O157:H7 GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|A7ZIJ5|CLPP_ECO24 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=clpP PE=3 SV=1
Length = 207
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + +L A H G+
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
+ EQIE D R ++ S EAVEYG++D +L
Sbjct: 174 SLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>sp|C5BCJ6|CLPP_EDWI9 ATP-dependent Clp protease proteolytic subunit OS=Edwardsiella
ictaluri (strain 93-146) GN=clpP PE=3 SV=1
Length = 206
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 123/209 (58%), Gaps = 8/209 (3%)
Query: 66 SFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFL 125
S+ + +P + +V T+ + D+ S L K RI++L + LI+A+ L
Sbjct: 2 SYSDQRELAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQML 61
Query: 126 YLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA 185
+L+ E+ EK I+LYINS G G T +IYD M ++KP + T+C+G A +
Sbjct: 62 FLEAENPEKDIHLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQACSMGS 113
Query: 186 LLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKT 245
LL AGA+G R LP+S +MI QP+G +GQATD+EI KE+ ++KA + L AKH G+
Sbjct: 114 FLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILSIKARMNTLMAKHSGQP 173
Query: 246 PEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
E IE D R ++ S +AVEYG++D VL
Sbjct: 174 IEVIERDTERDRFMSAQDAVEYGLVDAVL 202
>sp|Q8RHJ8|CLPP_FUSNN ATP-dependent Clp protease proteolytic subunit OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=clpP PE=3 SV=1
Length = 193
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 111/182 (60%), Gaps = 10/182 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+++G + +V I+A+ LYL+ ED EK I +YINS G G
Sbjct: 18 DIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYINSPG--------GS 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GR 212
T+ AIYD M Y+KP + T+CVG A A LL AGAKG R AL +S IMI QP+ G
Sbjct: 70 VTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQPLISGG 129
Query: 213 IEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDK 272
++GQATD+ I E+ +K L +L AK+ GKT EQI D R Y S EAV YG+ID
Sbjct: 130 LKGQATDISIHANELLKIKDRLAELLAKNTGKTKEQILRDTERDNYLSSEEAVNYGLIDS 189
Query: 273 VL 274
V
Sbjct: 190 VF 191
>sp|B9M0Y1|CLPP_GEOSF ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp.
(strain FRC-32) GN=clpP PE=3 SV=1
Length = 199
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 9/197 (4%)
Query: 79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M++P T + D+ S L K+RI++LG + +V+ L++A+ L+L+ ED +K I+
Sbjct: 1 MLVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIH 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T AIYD M Y+K P+ T+CVG A A LL G KG R
Sbjct: 61 LYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRF 112
Query: 198 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPK 257
+L +S IMI QP+G +GQATD+ I +E+ +K +L +L A+H G+T E+IEAD R
Sbjct: 113 SLANSRIMIHQPLGGFQGQATDIHIHAQEILRMKKKLNELLAEHSGQTVEKIEADTERDY 172
Query: 258 YFSPSEAVEYGIIDKVL 274
+ S +A YGIID ++
Sbjct: 173 FMSGEDAKTYGIIDSII 189
>sp|B0K533|CLPP_THEPX ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3
SV=1
Length = 195
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 8/184 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG + L++A+ L+L+ ED +K I+LYINS G G
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T FAIYD M Y+KP + TLCVG A AA LL AGAKG R ALP+S IMI QP+G ++
Sbjct: 71 ITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQ 130
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
GQATD++I + + ++ +L K+ A++ G+ E+I+AD R + +A YGIID+VL
Sbjct: 131 GQATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDAKAYGIIDEVL 190
Query: 275 YTEK 278
K
Sbjct: 191 IRNK 194
>sp|B0KBA4|CLPP_THEP3 ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=clpP PE=3 SV=1
Length = 195
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 8/184 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG + L++A+ L+L+ ED +K I+LYINS G G
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T FAIYD M Y+KP + TLCVG A AA LL AGAKG R ALP+S IMI QP+G ++
Sbjct: 71 ITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQ 130
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
GQATD++I + + ++ +L K+ A++ G+ E+I+AD R + +A YGIID+VL
Sbjct: 131 GQATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDAKAYGIIDEVL 190
Query: 275 YTEK 278
K
Sbjct: 191 IRNK 194
>sp|Q6AK59|CLPP_DESPS ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=clpP PE=3
SV=2
Length = 203
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 115/197 (58%), Gaps = 13/197 (6%)
Query: 90 EQPPP-----DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTG 144
EQ P D+ S L K RI++LG V +I+A+ L+L+ ED EK I YINS G
Sbjct: 9 EQTPRGERSYDIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDITFYINSPG 68
Query: 145 TTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTI 204
G T AIYD M Y+K I TLC+G A A+LL AG G R ALP+S I
Sbjct: 69 --------GSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNSRI 120
Query: 205 MIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 264
MI QP+G +GQATD+EI KE+ ++ +L + A H GKT ++IE+D R + S EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHTGKTLKKIESDTERDNFMSSVEA 180
Query: 265 VEYGIIDKVLYTEKSPE 281
+YG+ID+VL + E
Sbjct: 181 QKYGLIDEVLVKREDVE 197
>sp|B1L812|CLPP_THESQ ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp.
(strain RQ2) GN=clpP PE=3 SV=1
Length = 203
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 115/184 (62%), Gaps = 8/184 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG V L++A+ L+L+ ED +K +YLYINS G G
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GS 79
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M Y+K + T+CVG A AA+LL AGAKG R ALP++ IMI QP+G E
Sbjct: 80 VTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAE 139
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
G A DVEI +E+ +K L ++ +KH G+ E+IE D R + S EA EYGI+DKV+
Sbjct: 140 GPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199
Query: 275 YTEK 278
T +
Sbjct: 200 STRE 203
>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=clpP PE=3 SV=1
Length = 203
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 115/184 (62%), Gaps = 8/184 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG V L++A+ L+L+ ED +K +YLYINS G G
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GS 79
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M Y+K + T+CVG A AA+LL AGAKG R ALP++ IMI QP+G E
Sbjct: 80 VTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAE 139
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
G A DVEI +E+ +K L ++ +KH G+ E+IE D R + S EA EYGI+DKV+
Sbjct: 140 GPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199
Query: 275 YTEK 278
T +
Sbjct: 200 STRE 203
>sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=clpP PE=3 SV=1
Length = 203
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 115/184 (62%), Gaps = 8/184 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG V L++A+ L+L+ ED +K +YLYINS G G
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GS 79
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M Y+K + T+CVG A AA+LL AGAKG R ALP++ IMI QP+G E
Sbjct: 80 VTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAE 139
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
G A DVEI +E+ +K L ++ +KH G+ E+IE D R + S EA EYGI+DKV+
Sbjct: 140 GPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199
Query: 275 YTEK 278
T +
Sbjct: 200 STRE 203
>sp|O30612|CLPP2_MYXXD ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1
Length = 203
Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 120/201 (59%), Gaps = 9/201 (4%)
Query: 79 MVIPFTSGTAWE-QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M +PF T + DL S L K+RI+ LG V +I+A+ L+L+ ED +K I
Sbjct: 1 MNVPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGIN 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T AIYD M YVK P+ T+CVG A ALLL AGAKG R
Sbjct: 61 LYINSPG--------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRY 112
Query: 198 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPK 257
ALP+S IMI QP+G +GQATD++I KE+ +++ + L KH G T E+IE D R
Sbjct: 113 ALPNSRIMIHQPLGGAQGQATDIDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDY 172
Query: 258 YFSPSEAVEYGIIDKVLYTEK 278
+ S +A +YG+ID+V+ ++
Sbjct: 173 FMSAEDARQYGLIDEVVEKQR 193
>sp|A0LEF1|CLPP_SYNFM ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1
Length = 202
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L ++RI++LG + V +I+A+ L+L+ ED +K I+ YINS G G
Sbjct: 19 DIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPG--------GL 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M ++KP + TLC+G A AA+LL AG KG R ALP IM+ QP+G +
Sbjct: 71 VTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQPMGGFQ 130
Query: 215 GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 274
GQATDVEI KE+ ++ EL + +H G+ EQI+ D R Y S +A EYG++D +
Sbjct: 131 GQATDVEIQAKEILKLREELNDILVRHTGRPVEQIQRDTDRDFYMSGEQAREYGMVDHIF 190
Query: 275 YTEKS 279
+ S
Sbjct: 191 TSRLS 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,702,092
Number of Sequences: 539616
Number of extensions: 4929011
Number of successful extensions: 14003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 12326
Number of HSP's gapped (non-prelim): 791
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)