Query 022570
Match_columns 295
No_of_seqs 241 out of 1513
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:33:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 9.9E-68 2.2E-72 482.4 20.0 181 91-279 80-260 (275)
2 COG0740 ClpP Protease subunit 100.0 2.5E-65 5.5E-70 456.1 20.7 196 75-281 2-197 (200)
3 PRK12552 ATP-dependent Clp pro 100.0 2.6E-61 5.5E-66 437.6 22.4 199 80-278 7-216 (222)
4 PRK14513 ATP-dependent Clp pro 100.0 9.1E-60 2E-64 422.4 22.3 192 76-278 3-194 (201)
5 PRK14514 ATP-dependent Clp pro 100.0 7.2E-60 1.6E-64 428.3 21.7 191 76-277 30-220 (221)
6 CHL00028 clpP ATP-dependent Cl 100.0 3E-58 6.5E-63 412.3 22.6 185 87-279 14-199 (200)
7 PRK12551 ATP-dependent Clp pro 100.0 7.8E-58 1.7E-62 408.5 21.5 182 88-277 10-191 (196)
8 TIGR00493 clpP ATP-dependent C 100.0 1.8E-53 3.8E-58 378.6 21.3 189 77-276 3-191 (191)
9 PRK00277 clpP ATP-dependent Cl 100.0 1.6E-51 3.5E-56 368.2 22.0 193 76-279 7-199 (200)
10 PRK14512 ATP-dependent Clp pro 100.0 1.7E-50 3.7E-55 361.3 21.5 179 92-278 12-190 (197)
11 PF00574 CLP_protease: Clp pro 100.0 5.2E-50 1.1E-54 350.3 15.7 180 90-277 3-182 (182)
12 PRK12553 ATP-dependent Clp pro 100.0 3.9E-49 8.5E-54 354.6 20.6 193 76-279 11-205 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 5.6E-47 1.2E-51 330.3 18.1 171 95-273 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 2.6E-45 5.6E-50 317.9 19.6 162 104-273 1-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 6.6E-33 1.4E-37 237.8 18.7 156 105-273 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 1.5E-30 3.3E-35 228.6 17.5 157 105-278 3-167 (172)
17 cd00394 Clp_protease_like Case 100.0 9.8E-30 2.1E-34 217.3 18.2 159 105-273 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.9 1.4E-25 3.1E-30 198.0 18.7 161 105-277 3-166 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 1.7E-22 3.7E-27 178.2 18.1 157 105-277 3-172 (178)
20 cd07023 S49_Sppa_N_C Signal pe 99.8 7.3E-18 1.6E-22 150.7 16.9 161 105-276 4-200 (208)
21 TIGR00706 SppA_dom signal pept 99.8 1.6E-17 3.6E-22 148.8 18.4 160 105-276 4-195 (207)
22 cd07014 S49_SppA Signal peptid 99.8 2.9E-17 6.4E-22 143.3 17.0 144 116-276 23-169 (177)
23 cd07022 S49_Sppa_36K_type Sign 99.7 2.4E-16 5.1E-21 141.9 18.2 150 115-276 25-206 (214)
24 TIGR00705 SppA_67K signal pept 99.7 1.2E-16 2.7E-21 163.3 18.1 160 105-275 312-510 (584)
25 cd07019 S49_SppA_1 Signal pept 99.7 3.5E-15 7.6E-20 134.2 18.2 161 105-276 4-203 (211)
26 COG0616 SppA Periplasmic serin 99.7 1.7E-15 3.7E-20 144.5 16.0 162 105-277 63-263 (317)
27 PRK10949 protease 4; Provision 99.6 5.6E-14 1.2E-18 144.7 18.0 162 105-277 330-530 (618)
28 cd07018 S49_SppA_67K_type Sign 99.5 2.1E-13 4.5E-18 123.6 15.0 156 109-276 23-213 (222)
29 PRK11778 putative inner membra 99.5 2.3E-12 4.9E-17 123.9 17.1 161 105-278 94-288 (330)
30 COG1030 NfeD Membrane-bound se 99.3 1.8E-11 3.9E-16 120.7 13.7 157 105-277 30-189 (436)
31 PF01972 SDH_sah: Serine dehyd 99.1 1.3E-09 2.9E-14 102.2 15.7 146 109-269 69-241 (285)
32 TIGR00705 SppA_67K signal pept 98.9 1.7E-08 3.8E-13 103.7 15.1 153 114-277 75-270 (584)
33 PF01343 Peptidase_S49: Peptid 98.9 1.3E-08 2.9E-13 87.3 10.7 109 165-276 2-140 (154)
34 PRK10949 protease 4; Provision 98.8 1.5E-07 3.3E-12 97.4 15.2 153 114-277 94-289 (618)
35 cd06558 crotonase-like Crotona 98.6 1.2E-06 2.6E-11 76.2 13.8 148 106-276 12-181 (195)
36 PRK05869 enoyl-CoA hydratase; 98.3 2.1E-05 4.5E-10 71.5 13.8 150 106-277 21-188 (222)
37 TIGR00513 accA acetyl-CoA carb 98.3 7.3E-06 1.6E-10 78.8 11.1 144 102-279 122-270 (316)
38 PRK06688 enoyl-CoA hydratase; 98.3 1.7E-05 3.7E-10 73.0 12.9 151 106-277 18-185 (259)
39 PRK06495 enoyl-CoA hydratase; 98.3 2.2E-05 4.7E-10 72.6 13.6 148 106-277 17-183 (257)
40 PRK12319 acetyl-CoA carboxylas 98.2 1.6E-05 3.4E-10 74.5 12.6 140 102-277 69-215 (256)
41 PRK08258 enoyl-CoA hydratase; 98.2 2.8E-05 6.1E-10 72.6 14.4 145 112-277 41-203 (277)
42 PRK07511 enoyl-CoA hydratase; 98.2 2.8E-05 6E-10 71.8 13.9 150 106-277 16-187 (260)
43 PLN03230 acetyl-coenzyme A car 98.2 1.5E-05 3.2E-10 79.1 12.3 141 103-279 193-340 (431)
44 PRK05724 acetyl-CoA carboxylas 98.2 1.9E-05 4E-10 76.1 12.5 148 101-279 121-270 (319)
45 PRK03580 carnitinyl-CoA dehydr 98.2 3E-05 6.6E-10 71.7 13.2 150 106-277 16-183 (261)
46 PF00378 ECH: Enoyl-CoA hydrat 98.2 1.5E-05 3.2E-10 72.6 11.0 146 112-278 22-180 (245)
47 PRK11423 methylmalonyl-CoA dec 98.1 4.5E-05 9.7E-10 70.8 12.9 149 106-277 17-185 (261)
48 CHL00198 accA acetyl-CoA carbo 98.1 5.1E-05 1.1E-09 73.2 13.5 142 102-279 125-273 (322)
49 PRK06190 enoyl-CoA hydratase; 98.1 8.1E-05 1.8E-09 69.1 14.2 144 112-277 28-183 (258)
50 PRK06143 enoyl-CoA hydratase; 98.1 6.6E-05 1.4E-09 69.5 13.4 144 112-277 31-188 (256)
51 PRK05981 enoyl-CoA hydratase; 98.1 6E-05 1.3E-09 69.8 13.0 144 112-278 28-193 (266)
52 PRK06210 enoyl-CoA hydratase; 98.1 5.8E-05 1.3E-09 70.1 12.9 150 106-277 19-197 (272)
53 PRK09674 enoyl-CoA hydratase-i 98.1 7.7E-05 1.7E-09 68.8 13.5 144 112-277 26-181 (255)
54 PRK05980 enoyl-CoA hydratase; 98.1 5.2E-05 1.1E-09 70.0 12.0 144 112-277 27-189 (260)
55 PRK07509 enoyl-CoA hydratase; 98.1 7.5E-05 1.6E-09 68.9 12.9 148 106-275 16-189 (262)
56 PRK09076 enoyl-CoA hydratase; 98.0 0.00011 2.3E-09 68.0 13.7 144 112-277 26-184 (258)
57 PRK06023 enoyl-CoA hydratase; 98.0 8.3E-05 1.8E-09 68.4 12.8 144 112-277 30-186 (251)
58 PRK07938 enoyl-CoA hydratase; 98.0 7.5E-05 1.6E-09 68.8 12.4 142 112-277 25-180 (249)
59 PRK07110 polyketide biosynthes 98.0 7E-05 1.5E-09 68.9 12.0 144 112-277 29-183 (249)
60 PRK07658 enoyl-CoA hydratase; 98.0 0.00011 2.3E-09 67.7 13.1 144 112-277 25-183 (257)
61 PRK08150 enoyl-CoA hydratase; 98.0 0.00016 3.4E-09 66.9 14.1 143 112-278 26-182 (255)
62 PLN02888 enoyl-CoA hydratase 98.0 0.00013 2.9E-09 67.9 13.6 142 112-277 34-188 (265)
63 PRK08260 enoyl-CoA hydratase; 98.0 0.0001 2.2E-09 69.7 13.0 97 161-277 105-202 (296)
64 TIGR03189 dienoyl_CoA_hyt cycl 98.0 0.00018 3.9E-09 66.5 14.0 149 106-276 14-176 (251)
65 PLN02664 enoyl-CoA hydratase/d 98.0 0.00014 3E-09 68.0 13.2 144 112-276 32-199 (275)
66 PRK06213 enoyl-CoA hydratase; 98.0 0.00019 4.2E-09 65.1 13.7 143 112-277 26-181 (229)
67 PLN03214 probable enoyl-CoA hy 98.0 0.00014 3E-09 68.3 13.0 146 112-277 35-197 (278)
68 PRK07260 enoyl-CoA hydratase; 98.0 9.6E-05 2.1E-09 68.1 11.8 148 106-277 15-187 (255)
69 PRK08139 enoyl-CoA hydratase; 98.0 0.0002 4.3E-09 66.6 13.8 144 112-277 35-192 (266)
70 PLN02921 naphthoate synthase 98.0 0.00018 3.9E-09 69.3 14.0 150 105-277 79-250 (327)
71 PRK07468 enoyl-CoA hydratase; 98.0 0.00013 2.8E-09 67.6 12.5 144 112-277 29-188 (262)
72 PRK06127 enoyl-CoA hydratase; 97.9 0.00021 4.5E-09 66.5 13.8 150 106-277 24-195 (269)
73 TIGR03210 badI 2-ketocyclohexa 97.9 0.00015 3.4E-09 66.9 12.8 143 112-277 26-183 (256)
74 PLN02600 enoyl-CoA hydratase 97.9 0.00021 4.5E-09 65.9 13.6 144 112-277 19-177 (251)
75 PRK08138 enoyl-CoA hydratase; 97.9 0.00019 4.1E-09 66.4 13.4 144 112-277 32-187 (261)
76 TIGR02280 PaaB1 phenylacetate 97.9 0.00014 3.1E-09 67.0 12.4 143 112-277 23-182 (256)
77 PRK06142 enoyl-CoA hydratase; 97.9 0.0002 4.3E-09 66.6 13.4 149 106-276 19-197 (272)
78 PRK06494 enoyl-CoA hydratase; 97.9 0.00023 5E-09 65.8 13.6 144 112-277 28-183 (259)
79 PRK05995 enoyl-CoA hydratase; 97.9 0.00022 4.7E-09 65.9 13.4 143 112-276 28-186 (262)
80 PRK05809 3-hydroxybutyryl-CoA 97.9 0.00013 2.9E-09 67.2 12.0 144 112-276 28-185 (260)
81 PRK08290 enoyl-CoA hydratase; 97.9 9.9E-05 2.1E-09 69.6 11.3 96 161-277 110-205 (288)
82 PRK05864 enoyl-CoA hydratase; 97.9 0.00014 3.1E-09 67.9 12.0 146 112-277 34-199 (276)
83 PRK05862 enoyl-CoA hydratase; 97.9 0.00024 5.1E-09 65.6 13.3 144 112-277 28-183 (257)
84 PRK06563 enoyl-CoA hydratase; 97.9 0.00027 5.8E-09 65.2 13.4 150 106-277 12-181 (255)
85 PRK07327 enoyl-CoA hydratase; 97.9 0.00021 4.6E-09 66.4 12.9 144 112-277 36-195 (268)
86 PRK07657 enoyl-CoA hydratase; 97.9 0.00026 5.7E-09 65.4 13.3 143 112-278 28-187 (260)
87 PRK06072 enoyl-CoA hydratase; 97.9 0.00029 6.2E-09 64.9 13.4 147 105-273 12-173 (248)
88 PLN03229 acetyl-coenzyme A car 97.9 0.00018 4E-09 75.5 13.4 143 102-278 213-360 (762)
89 TIGR03134 malonate_gamma malon 97.9 0.0002 4.4E-09 66.4 12.3 141 112-279 45-192 (238)
90 PRK09245 enoyl-CoA hydratase; 97.9 0.00029 6.4E-09 65.2 13.4 97 161-277 95-192 (266)
91 PRK06144 enoyl-CoA hydratase; 97.9 0.00027 5.9E-09 65.5 13.1 144 112-277 32-192 (262)
92 PRK07854 enoyl-CoA hydratase; 97.9 0.00026 5.7E-09 65.0 12.9 141 112-275 24-173 (243)
93 PRK09120 p-hydroxycinnamoyl Co 97.9 0.00028 6E-09 66.1 13.3 144 112-278 32-194 (275)
94 TIGR01929 menB naphthoate synt 97.9 0.00025 5.4E-09 65.7 12.6 143 112-277 27-186 (259)
95 PRK08252 enoyl-CoA hydratase; 97.8 0.0004 8.7E-09 64.1 13.7 144 112-277 27-180 (254)
96 PRK07396 dihydroxynaphthoic ac 97.8 0.00035 7.5E-09 65.3 13.4 143 112-277 37-196 (273)
97 PRK08788 enoyl-CoA hydratase; 97.8 0.00041 8.8E-09 65.8 13.8 92 167-277 119-210 (287)
98 PRK08140 enoyl-CoA hydratase; 97.8 0.00038 8.3E-09 64.3 13.3 143 112-277 28-188 (262)
99 PRK07799 enoyl-CoA hydratase; 97.8 0.00046 1E-08 63.9 13.5 151 106-278 18-190 (263)
100 PRK08259 enoyl-CoA hydratase; 97.8 0.00046 1E-08 63.8 13.2 145 112-278 27-183 (254)
101 PRK07112 polyketide biosynthes 97.8 0.00071 1.5E-08 62.5 13.9 147 106-276 17-183 (255)
102 PRK12478 enoyl-CoA hydratase; 97.7 0.00028 6E-09 67.0 11.2 147 106-277 18-198 (298)
103 PRK08321 naphthoate synthase; 97.7 0.0007 1.5E-08 64.3 13.9 97 161-277 127-225 (302)
104 TIGR03200 dearomat_oah 6-oxocy 97.7 0.00067 1.4E-08 66.5 13.5 162 90-279 30-215 (360)
105 PRK07659 enoyl-CoA hydratase; 97.7 0.00022 4.8E-09 66.0 9.7 138 112-274 30-184 (260)
106 PRK05674 gamma-carboxygeranoyl 97.7 0.00061 1.3E-08 63.4 12.7 143 112-276 30-188 (265)
107 PLN02267 enoyl-CoA hydratase/i 97.7 0.0014 3.1E-08 60.1 14.8 145 112-276 23-184 (239)
108 PRK08272 enoyl-CoA hydratase; 97.7 0.00082 1.8E-08 63.6 13.5 148 105-276 22-212 (302)
109 KOG1680 Enoyl-CoA hydratase [L 97.7 0.00025 5.4E-09 67.0 9.4 144 112-278 61-217 (290)
110 PRK05870 enoyl-CoA hydratase; 97.6 0.00049 1.1E-08 63.3 10.6 141 112-274 27-181 (249)
111 PRK07827 enoyl-CoA hydratase; 97.6 0.00085 1.8E-08 62.0 11.6 141 112-275 30-187 (260)
112 PLN02851 3-hydroxyisobutyryl-C 97.5 0.0018 4E-08 64.4 13.6 150 104-278 53-227 (407)
113 PRK08184 benzoyl-CoA-dihydrodi 97.5 0.00089 1.9E-08 68.9 11.4 99 161-277 115-217 (550)
114 COG3904 Predicted periplasmic 97.5 0.002 4.4E-08 58.9 12.3 152 105-272 78-236 (245)
115 COG1024 CaiD Enoyl-CoA hydrata 97.5 0.0012 2.6E-08 60.8 11.1 144 111-277 28-187 (257)
116 PLN02988 3-hydroxyisobutyryl-C 97.5 0.0022 4.8E-08 63.2 13.5 149 105-278 21-194 (381)
117 PLN02157 3-hydroxyisobutyryl-C 97.5 0.0028 6E-08 63.0 14.1 149 105-278 49-222 (401)
118 TIGR02440 FadJ fatty oxidation 97.4 0.0023 4.9E-08 67.5 13.8 145 112-277 26-187 (699)
119 PRK11730 fadB multifunctional 97.4 0.0026 5.5E-08 67.3 13.7 144 112-277 31-191 (715)
120 TIGR01117 mmdA methylmalonyl-C 97.4 0.0017 3.6E-08 66.4 11.7 151 109-277 328-482 (512)
121 TIGR02437 FadB fatty oxidation 97.4 0.0029 6.3E-08 67.0 13.8 143 112-276 31-190 (714)
122 PRK05617 3-hydroxyisobutyryl-C 97.3 0.0012 2.6E-08 63.9 9.9 147 106-277 16-188 (342)
123 PLN02874 3-hydroxyisobutyryl-C 97.3 0.0042 9.1E-08 61.0 13.0 151 105-277 23-193 (379)
124 TIGR03222 benzo_boxC benzoyl-C 97.3 0.0026 5.7E-08 65.4 11.5 101 161-277 111-213 (546)
125 PRK11154 fadJ multifunctional 97.2 0.0059 1.3E-07 64.5 13.9 144 112-277 31-192 (708)
126 TIGR03222 benzo_boxC benzoyl-C 96.9 0.015 3.2E-07 60.1 13.5 147 112-278 295-467 (546)
127 TIGR02441 fa_ox_alpha_mit fatt 96.9 0.015 3.3E-07 61.8 14.0 144 112-276 38-198 (737)
128 PLN02820 3-methylcrotonyl-CoA 96.9 0.0041 8.8E-08 64.4 8.8 158 110-277 380-541 (569)
129 PF01039 Carboxyl_trans: Carbo 96.7 0.0076 1.6E-07 61.2 9.4 155 109-277 307-465 (493)
130 PRK05654 acetyl-CoA carboxylas 96.5 0.027 6E-07 53.8 11.2 126 107-277 132-267 (292)
131 COG0825 AccA Acetyl-CoA carbox 96.4 0.013 2.9E-07 56.0 8.3 152 94-284 118-274 (317)
132 TIGR00515 accD acetyl-CoA carb 96.4 0.028 6.1E-07 53.6 10.5 133 107-278 131-267 (285)
133 PRK08184 benzoyl-CoA-dihydrodi 95.8 0.061 1.3E-06 55.6 10.2 98 161-278 361-471 (550)
134 PF06833 MdcE: Malonate decarb 94.9 0.2 4.3E-06 46.6 9.4 123 129-278 60-189 (234)
135 COG4799 Acetyl-CoA carboxylase 93.7 0.27 5.7E-06 50.7 8.3 153 109-277 337-495 (526)
136 TIGR03133 malonate_beta malona 92.6 0.81 1.7E-05 43.5 9.2 94 107-210 70-177 (274)
137 PRK07189 malonate decarboxylas 92.4 0.62 1.3E-05 44.9 8.2 93 107-210 79-186 (301)
138 KOG1681 Enoyl-CoA isomerase [L 91.3 0.11 2.3E-06 48.7 1.7 101 161-279 118-218 (292)
139 KOG1682 Enoyl-CoA isomerase [L 91.1 0.57 1.2E-05 43.3 6.1 97 161-278 117-214 (287)
140 CHL00174 accD acetyl-CoA carbo 90.8 2.6 5.7E-05 40.6 10.6 132 107-276 144-279 (296)
141 PLN02820 3-methylcrotonyl-CoA 80.4 10 0.00023 39.6 9.4 100 107-210 140-245 (569)
142 TIGR01117 mmdA methylmalonyl-C 74.8 18 0.00039 37.3 9.1 98 107-210 93-194 (512)
143 COG0447 MenB Dihydroxynaphthoi 71.9 2.5 5.5E-05 39.5 2.0 100 159-281 106-209 (282)
144 cd07041 STAS_RsbR_RsbS_like Su 69.7 15 0.00033 28.7 5.9 75 105-191 13-93 (109)
145 KOG1679 Enoyl-CoA hydratase [L 69.6 16 0.00034 34.3 6.6 137 118-277 61-213 (291)
146 TIGR02886 spore_II_AA anti-sig 68.9 27 0.0006 27.1 7.2 75 105-191 11-91 (106)
147 KOG0540 3-Methylcrotonyl-CoA c 68.0 26 0.00057 35.9 8.3 96 107-205 360-459 (536)
148 KOG0016 Enoyl-CoA hydratase/is 64.3 14 0.00031 35.1 5.3 97 161-276 99-195 (266)
149 cd06844 STAS Sulphate Transpor 60.8 41 0.0009 26.0 6.7 34 105-138 11-44 (100)
150 PF01039 Carboxyl_trans: Carbo 55.2 20 0.00043 36.6 5.0 92 107-210 68-171 (493)
151 PLN02522 ATP citrate (pro-S)-l 45.5 2.2E+02 0.0047 30.4 10.9 65 104-181 196-262 (608)
152 COG1366 SpoIIAA Anti-anti-sigm 44.8 1.2E+02 0.0027 24.1 7.3 79 105-191 16-96 (117)
153 TIGR00377 ant_ant_sig anti-ant 41.2 1.6E+02 0.0035 22.5 7.7 75 105-191 15-95 (108)
154 cd07560 Peptidase_S41_CPP C-te 39.6 2.3E+02 0.0049 25.5 8.9 87 94-190 40-152 (211)
155 cd06567 Peptidase_S41 C-termin 38.8 2.3E+02 0.005 24.9 8.8 67 114-190 72-165 (224)
156 PLN00125 Succinyl-CoA ligase [ 33.9 1.2E+02 0.0026 29.3 6.4 65 104-181 179-245 (300)
157 COG0777 AccD Acetyl-CoA carbox 33.4 2.7E+02 0.0058 27.0 8.5 120 107-276 133-267 (294)
158 TIGR00225 prc C-terminal pepti 30.9 2.3E+02 0.0051 27.0 7.9 70 112-190 161-255 (334)
159 PF00681 Plectin: Plectin repe 29.6 32 0.0007 23.5 1.3 19 254-272 17-35 (45)
160 PF06972 DUF1296: Protein of u 28.6 93 0.002 23.3 3.6 34 233-267 7-41 (60)
161 smart00250 PLEC Plectin repeat 27.8 36 0.00078 22.3 1.3 19 255-273 18-36 (38)
162 PF04110 APG12: Ubiquitin-like 25.9 1.3E+02 0.0027 24.0 4.2 69 102-182 16-87 (87)
163 PF14566 PTPlike_phytase: Inos 25.3 2.3E+02 0.0049 24.1 6.1 63 97-166 83-149 (149)
164 PF13607 Succ_CoA_lig: Succiny 25.2 1.7E+02 0.0037 24.8 5.3 60 104-179 30-91 (138)
165 PRK11186 carboxy-terminal prot 24.4 2.9E+02 0.0063 29.7 7.8 68 114-190 365-458 (667)
166 PF01381 HTH_3: Helix-turn-hel 24.1 1.5E+02 0.0032 20.0 3.9 32 235-266 12-43 (55)
167 cd01834 SGNH_hydrolase_like_2 24.1 2.2E+02 0.0048 23.5 5.8 67 103-180 2-72 (191)
168 TIGR02675 tape_meas_nterm tape 23.7 1.4E+02 0.0031 22.6 4.1 28 234-262 46-73 (75)
169 TIGR00161 conserved hypothetic 23.6 5.3E+02 0.011 23.7 8.6 45 92-138 67-113 (238)
170 PLN00049 carboxyl-terminal pro 23.4 3.6E+02 0.0079 26.6 7.9 78 104-190 195-300 (389)
171 KOG3439 Protein conjugation fa 23.4 2.5E+02 0.0054 23.6 5.6 73 100-181 43-115 (116)
172 cd01844 SGNH_hydrolase_like_6 22.5 2.1E+02 0.0045 24.1 5.3 21 160-180 48-68 (177)
173 cd01409 SIRT4 SIRT4: Eukaryoti 22.0 2.2E+02 0.0048 26.6 5.8 66 98-179 176-241 (260)
174 TIGR01729 taurine_ABC_bnd taur 21.3 3.1E+02 0.0068 25.1 6.7 31 234-264 226-256 (300)
175 PTZ00187 succinyl-CoA syntheta 20.9 2.8E+02 0.0061 27.0 6.4 76 94-181 183-264 (317)
176 TIGR03070 couple_hipB transcri 20.7 2.3E+02 0.005 18.8 4.4 32 235-266 18-49 (58)
177 PTZ00409 Sir2 (Silent Informat 20.3 3.2E+02 0.0069 25.8 6.5 64 99-178 172-235 (271)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-68 Score=482.45 Aligned_cols=181 Identities=51% Similarity=0.792 Sum_probs=178.2
Q ss_pred CCCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCC
Q 022570 91 QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP 170 (295)
Q Consensus 91 ~~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~ 170 (295)
++|+||||+||++|||||+++|||+++++|++|||||+++|++|+|+||||||| |++++|++|||+|+++++
T Consensus 80 ~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG--------G~vtaglAIYDtMq~ik~ 151 (275)
T KOG0840|consen 80 ERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKP 151 (275)
T ss_pred CCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC--------CccchhhhHHHHHHhhCC
Confidence 799999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 022570 171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIE 250 (295)
Q Consensus 171 ~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~ 250 (295)
||.|+|+|+|||||+|||++|+||+|+++||+++|||||.++++||+.|+.++++|+.++++.+.++|++|||+|.|+|+
T Consensus 152 ~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~ 231 (275)
T KOG0840|consen 152 DVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIE 231 (275)
T ss_pred CceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccCHHHHHHcCCeeEEccCCCC
Q 022570 251 ADIRRPKYFSPSEAVEYGIIDKVLYTEKS 279 (295)
Q Consensus 251 ~~~~rd~~msA~EAleyGLID~Ii~~~~~ 279 (295)
++++||+||+|+||+||||||+|++.+..
T Consensus 232 ~d~dRd~fmsa~EA~eyGliD~v~~~p~~ 260 (275)
T KOG0840|consen 232 KDMDRDRFMSAEEAKEYGLIDKVIDHPPE 260 (275)
T ss_pred hhhcccccCCHHHHHHhcchhhhhcCCcc
Confidence 99999999999999999999999997443
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.5e-65 Score=456.08 Aligned_cols=196 Identities=44% Similarity=0.735 Sum_probs=188.9
Q ss_pred CeeeeeeecccCCCCCCCCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCc
Q 022570 75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154 (295)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~ 154 (295)
.++|+++|+ ++++++++|||++|+++|+|||+|+|++++++.+++||++|+++++.|+|+||||||| |+
T Consensus 2 ~~~~~~~e~---~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG--------G~ 70 (200)
T COG0740 2 ALVPMVIEQ---TSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GS 70 (200)
T ss_pred CCCccccCc---ccCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC--------cc
Confidence 367888887 3678899999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHH
Q 022570 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234 (295)
Q Consensus 155 V~aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i 234 (295)
|++|++|||+|+++++||+|+|+|+|||||++|++||++|+|+++|||++|||||+++++|+++|++++++|++++++++
T Consensus 71 V~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l 150 (200)
T COG0740 71 VTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERL 150 (200)
T ss_pred cchhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCCCCC
Q 022570 235 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPE 281 (295)
Q Consensus 235 ~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~~~~ 281 (295)
.++|+++||++.|+|+++++||+||||+||++|||||+|++.++...
T Consensus 151 ~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~~ 197 (200)
T COG0740 151 NRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAAA 197 (200)
T ss_pred HHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccccc
Confidence 99999999999999999999999999999999999999999876543
No 3
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=2.6e-61 Score=437.63 Aligned_cols=199 Identities=49% Similarity=0.882 Sum_probs=186.9
Q ss_pred eeecccCCCCCCCCCChhhhhccCcEEEEcceeCcc----------hHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CC
Q 022570 80 VIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTT-KG 148 (295)
Q Consensus 80 ~~~~~~~~~~~~~~~Di~s~Ll~eRIIfL~g~I~d~----------~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~ 148 (295)
.+|+......+.+|+|||++||++|||||+++|+|+ ++++|++|||||+.+|+.++|+|||||||.+ .+
T Consensus 7 ~~~~~~~~~~~~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~ 86 (222)
T PRK12552 7 QAPYYGDAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYT 86 (222)
T ss_pred cccccCCCCCCCCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccc
Confidence 344432233455789999999999999999999999 9999999999999999999999999999976 58
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHH
Q 022570 149 GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMK 228 (295)
Q Consensus 149 ~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~ 228 (295)
|+++|+|++|++|||+|++++++|+|+|+|+|||||++||++|+||+|+++|||++|||||+++.+||++|++++++|++
T Consensus 87 G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~ 166 (222)
T PRK12552 87 GDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVL 166 (222)
T ss_pred cccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 229 NVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 229 ~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
++++.+.++|+++||++.|+|+++++||+||||+||++|||||+|++++.
T Consensus 167 ~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~ 216 (222)
T PRK12552 167 HNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK 216 (222)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCC
Confidence 99999999999999999999999999999999999999999999998743
No 4
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=9.1e-60 Score=422.39 Aligned_cols=192 Identities=38% Similarity=0.609 Sum_probs=183.8
Q ss_pred eeeeeeecccCCCCCCCCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcH
Q 022570 76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE 155 (295)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V 155 (295)
++|+++|. +.++++|+|||++||++|||||+++|+++++++|++||++|+++++.++|+||||||| |+|
T Consensus 3 ~~p~~~~~---~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG--------G~v 71 (201)
T PRK14513 3 VIPYVIEQ---TGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG--------GEV 71 (201)
T ss_pred CCCccccc---CCCCccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------Cch
Confidence 35666654 3556788999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHH
Q 022570 156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV 235 (295)
Q Consensus 156 ~aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~ 235 (295)
++|++|||+|++++++|+|+|+|+|||||++|+++|++|+|+++|||++|||||+++..|++.|++++++|++++++.+.
T Consensus 72 ~~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~ 151 (201)
T PRK14513 72 YAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLV 151 (201)
T ss_pred hhHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 236 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 236 ~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
++|+++||++.++|.++|+||+||||+||++|||||+|+++.+
T Consensus 152 ~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 152 DIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCC
Confidence 9999999999999999999999999999999999999999754
No 5
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=7.2e-60 Score=428.29 Aligned_cols=191 Identities=37% Similarity=0.594 Sum_probs=184.3
Q ss_pred eeeeeeecccCCCCCCCCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcH
Q 022570 76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE 155 (295)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V 155 (295)
++|++++.. ..+++++|||++||++|||||+|+|++.+++++++||+||+.++++++|+||||||| |+|
T Consensus 30 ~~p~~~~~~---~~~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG--------Gsv 98 (221)
T PRK14514 30 LNPYILEER---QLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG--------GSV 98 (221)
T ss_pred ccceeeeeC---CCCCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC--------cch
Confidence 677777653 456789999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHH
Q 022570 156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV 235 (295)
Q Consensus 156 ~aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~ 235 (295)
++|++|||+|+++++||+|+|+|+|||||++|+++|++|+|+++|||++|||||+++..|+++|++++++|++++++.+.
T Consensus 99 ~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~ 178 (221)
T PRK14514 99 YAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELY 178 (221)
T ss_pred hhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 236 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 236 ~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
++|+++||++.++|+++++||+||||+||++|||||+|++++
T Consensus 179 ~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 179 TIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred HHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 999999999999999999999999999999999999999864
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=3e-58 Score=412.32 Aligned_cols=185 Identities=33% Similarity=0.590 Sum_probs=179.2
Q ss_pred CCCCCCCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHh
Q 022570 87 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG 166 (295)
Q Consensus 87 ~~~~~~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~ 166 (295)
...+.+|+|+|++||++|||||+++||+++++++++||+||+.+|+.++|+||||||| |+|++|++|||+|+
T Consensus 14 ~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG--------G~v~~g~aIyd~m~ 85 (200)
T CHL00028 14 GEEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG--------GSVISGLAIYDTMQ 85 (200)
T ss_pred CCCCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC--------cchhhHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022570 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR-IEGQATDVEIARKEMKNVKAELVKLYAKHFGKT 245 (295)
Q Consensus 167 ~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g-~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s 245 (295)
+++++|+|+|+|+|||||++||++|+||+|+++|||++|||||+++ ..|+++|+++++++++++++.+.++|+++||++
T Consensus 86 ~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~ 165 (200)
T CHL00028 86 FVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKP 165 (200)
T ss_pred hcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCHHHHHHcCCeeEEccCCCC
Q 022570 246 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 279 (295)
Q Consensus 246 ~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~~ 279 (295)
.++|+++++||+||||+||++|||||+|+++..+
T Consensus 166 ~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~~~ 199 (200)
T CHL00028 166 LWVISEDMERDVFMSATEAKAYGIVDLVAVNNEE 199 (200)
T ss_pred HHHHHHHhhcCccCCHHHHHHcCCCcEEeecCcC
Confidence 9999999999999999999999999999987543
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=7.8e-58 Score=408.54 Aligned_cols=182 Identities=42% Similarity=0.655 Sum_probs=177.6
Q ss_pred CCCCCCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhh
Q 022570 88 AWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY 167 (295)
Q Consensus 88 ~~~~~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ 167 (295)
..+++++|||++||++|||||+++|++++++++++||++|+.+++.++|+||||||| |+|++|++|||+|++
T Consensus 10 ~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG--------G~v~~g~aIyd~m~~ 81 (196)
T PRK12551 10 GRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG--------GSVYDGLGIFDTMQH 81 (196)
T ss_pred CCCccccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC--------cchhhHHHHHHHHHh
Confidence 345577999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 022570 168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPE 247 (295)
Q Consensus 168 ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e 247 (295)
++++|+|+|+|+|||||++|+++|++|+|+++|||++|||||+++..|+++|+++++++++++++.+.++|+++||++.+
T Consensus 82 ~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~ 161 (196)
T PRK12551 82 VKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLE 161 (196)
T ss_pred cCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 248 QIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 248 ~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
+|.++++||+||||+||++|||||+|++++
T Consensus 162 ~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 162 RIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 999999999999999999999999999975
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=1.8e-53 Score=378.57 Aligned_cols=189 Identities=48% Similarity=0.721 Sum_probs=180.0
Q ss_pred eeeeeecccCCCCCCCCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHH
Q 022570 77 ITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET 156 (295)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~ 156 (295)
+|.+++. +..++.++|||++||++|+|||+|+|++++++++++||++|+.+++.++|+||||||| |+|+
T Consensus 3 ~p~~~~~---~~~~~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG--------G~v~ 71 (191)
T TIGR00493 3 IPMVIEQ---TGRGERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG--------GSIT 71 (191)
T ss_pred CCccccc---CCCCcccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CCHH
Confidence 4555444 3456788999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHH
Q 022570 157 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK 236 (295)
Q Consensus 157 aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~ 236 (295)
+|++|||+|++++++|+|+|.|.|||||++|+++|++++|+++|||++|||||+++..|++.|++++++++.++++.+.+
T Consensus 72 ~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~ 151 (191)
T TIGR00493 72 AGLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLND 151 (191)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 237 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 237 iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
+|+++||++.++|++++++|+||||+||++|||||+|+++
T Consensus 152 ~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~~ 191 (191)
T TIGR00493 152 ILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLTR 191 (191)
T ss_pred HHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEecC
Confidence 9999999999999999999999999999999999999863
No 9
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.6e-51 Score=368.23 Aligned_cols=193 Identities=46% Similarity=0.740 Sum_probs=182.6
Q ss_pred eeeeeeecccCCCCCCCCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcH
Q 022570 76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE 155 (295)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V 155 (295)
++|++++. +..++.|+||+++||++|+|||+|+|++++++.++++|++|+.+++.++|+||||||| |+|
T Consensus 7 ~~p~~~~~---~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG--------G~v 75 (200)
T PRK00277 7 LVPMVIEQ---TSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GSV 75 (200)
T ss_pred CCceeecc---CCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CcH
Confidence 34554433 3456788999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHH
Q 022570 156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV 235 (295)
Q Consensus 156 ~aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~ 235 (295)
++|++|||+|++++.+|+|+|.|.|+|+|++|+++|++++|+++||+++|||||+++..|++.|++++++++.++++.+.
T Consensus 76 ~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~ 155 (200)
T PRK00277 76 TAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLN 155 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCCC
Q 022570 236 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 279 (295)
Q Consensus 236 ~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~~ 279 (295)
++|+++||++.++|++++++|+||||+||++|||||+|++.+++
T Consensus 156 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~~ 199 (200)
T PRK00277 156 EILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRKE 199 (200)
T ss_pred HHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCCC
Confidence 99999999999999999999999999999999999999987543
No 10
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.7e-50 Score=361.35 Aligned_cols=179 Identities=33% Similarity=0.538 Sum_probs=174.2
Q ss_pred CCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCC
Q 022570 92 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP 171 (295)
Q Consensus 92 ~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~ 171 (295)
.+.|++++||++|+|||+|+|++++++.|+++|++|+.+++.++|+||||||| |+|++|++|||+|++++.|
T Consensus 12 ~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v~ag~aI~d~i~~~~~~ 83 (197)
T PRK14512 12 GIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG--------GDIDAGFAIFNMIRFVKPK 83 (197)
T ss_pred CcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CCHHHHHHHHHHHHhCCCC
Confidence 45799999999999999999999999999999999998888999999999999 9999999999999999999
Q ss_pred EEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 022570 172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251 (295)
Q Consensus 172 V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~ 251 (295)
|+|+|.|.|||||++|+++|++++|+++|||++|||||+++..|+++|+++++++++++++.+.++|+++||++.++|++
T Consensus 84 V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~ 163 (197)
T PRK14512 84 VFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK 163 (197)
T ss_pred EEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 252 DIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 252 ~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
++++|+||||+||++|||||+|+++..
T Consensus 164 ~~~~d~~lta~EA~~yGliD~I~~~~~ 190 (197)
T PRK14512 164 DTDRDFWLDSSSAVKYGLVFEVVETRL 190 (197)
T ss_pred hhhcCcccCHHHHHHcCCccEeecCcH
Confidence 999999999999999999999998743
No 11
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=5.2e-50 Score=350.33 Aligned_cols=180 Identities=35% Similarity=0.569 Sum_probs=171.5
Q ss_pred CCCCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcC
Q 022570 90 EQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK 169 (295)
Q Consensus 90 ~~~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik 169 (295)
++.|+|||++|+++|+|||+|+|++++++.++++|++|+.+++.++|+|+||||| |+|.+|++|||.|+.++
T Consensus 3 ~~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG--------G~v~~g~~i~~~i~~~~ 74 (182)
T PF00574_consen 3 GEEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPG--------GDVDAGLAIYDAIRSSK 74 (182)
T ss_dssp EEEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE--------BCHHHHHHHHHHHHHSS
T ss_pred CcEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC--------CccHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 022570 170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 249 (295)
Q Consensus 170 ~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I 249 (295)
.+|+|+|.|.|||+|++|+++|++++|++.|||++|+|||+.+..|++.+++++++++.++++++.++|+++||++.++|
T Consensus 75 ~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i 154 (182)
T PF00574_consen 75 APVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEI 154 (182)
T ss_dssp SEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHH
T ss_pred CCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 250 EADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 250 ~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
++++++|+||+|+||++|||||+|++++
T Consensus 155 ~~~~~~~~~l~a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 155 EELMDRDTWLSAEEALEYGIIDEIIESR 182 (182)
T ss_dssp HHHCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred HHHHhCCccccHHHHHHcCCCCEeccCC
Confidence 9999999999999999999999999864
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3.9e-49 Score=354.63 Aligned_cols=193 Identities=35% Similarity=0.624 Sum_probs=181.1
Q ss_pred eeeeeeecccCCCCCCCCCChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcH
Q 022570 76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE 155 (295)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V 155 (295)
++|.+++.. ..+..+.||+++||++|+|||+|+|++++++.++++|++++.+++.++|+||||||| |++
T Consensus 11 ~~p~~~~~~---~~~~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v 79 (207)
T PRK12553 11 ILPSFIERT---SYGVKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG--------GSV 79 (207)
T ss_pred CCCcccccC---CCCCccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC--------CcH
Confidence 466655432 334566999999999999999999999999999999999999988999999999999 999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccc--cccccchHHHHHHHHHHHHHHHH
Q 022570 156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRIEGQATDVEIARKEMKNVKAE 233 (295)
Q Consensus 156 ~aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~--~g~~G~asDi~i~a~ei~~~~~~ 233 (295)
++|++|||+|++++.||+|+|.|.|+|+|++|+++|++|+|+++|||++|||||+ ++..|++.|+++++++++++++.
T Consensus 80 ~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~ 159 (207)
T PRK12553 80 TAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRER 159 (207)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 66899999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCCC
Q 022570 234 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 279 (295)
Q Consensus 234 i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~~ 279 (295)
+.++|+++||++.++|++++++++||||+||++|||||+|+++.++
T Consensus 160 ~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~d 205 (207)
T PRK12553 160 LERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYRD 205 (207)
T ss_pred HHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCchhh
Confidence 9999999999999999999999999999999999999999987654
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=5.6e-47 Score=330.28 Aligned_cols=171 Identities=52% Similarity=0.841 Sum_probs=168.2
Q ss_pred ChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEE
Q 022570 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFT 174 (295)
Q Consensus 95 Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~T 174 (295)
||+++||++|+|||+|+|+++++++++++|++++.+++.++|+||||||| |++.+|++|||.|++++.+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG--------G~v~~~~~i~~~l~~~~~~v~t 72 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKPPVST 72 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEE
Confidence 79999999999999999999999999999999999888899999999999 9999999999999999999999
Q ss_pred EEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 175 v~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
+|.|.|+|+|++|+++|++|+|+++||+++|+|+|+++..|++.|+..+++++.++++.+.++|+++||++.++|.++|+
T Consensus 73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHcCCeeEE
Q 022570 255 RPKYFSPSEAVEYGIIDKV 273 (295)
Q Consensus 255 rd~~msA~EAleyGLID~I 273 (295)
+++||||+||++|||||+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 9999999999999999987
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=2.6e-45 Score=317.94 Aligned_cols=162 Identities=37% Similarity=0.567 Sum_probs=159.6
Q ss_pred cEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEeccchhH
Q 022570 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGE 183 (295)
Q Consensus 104 RIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~ 183 (295)
|+|||+|+|++.+++.++++|++|+.+++.++|+||||||| |+++++++|||+|++++.||+|+|.|.|+|+
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG--------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~ 72 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPG--------GDVFAGMAIYDTIKFIKADVVTIIDGLAASM 72 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC--------CcHHHHHHHHHHHHhcCCCceEEEEeehhhH
Confidence 79999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHH
Q 022570 184 AALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSE 263 (295)
Q Consensus 184 galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~E 263 (295)
|++|+++|++|+|+++||+++|||||+++..|++.|+++++++++++++.+.++|+++||++.++|++++++++||+|+|
T Consensus 73 ~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~e 152 (162)
T cd07013 73 GSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSARE 152 (162)
T ss_pred HHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeeEE
Q 022570 264 AVEYGIIDKV 273 (295)
Q Consensus 264 AleyGLID~I 273 (295)
|++|||||+|
T Consensus 153 A~~~GliD~i 162 (162)
T cd07013 153 AVEYGFADTI 162 (162)
T ss_pred HHHcCCCCcC
Confidence 9999999986
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=6.6e-33 Score=237.76 Aligned_cols=156 Identities=24% Similarity=0.320 Sum_probs=149.6
Q ss_pred EEEEcceeCc---chHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEeccch
Q 022570 105 IVYLGMSFVP---SVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAW 181 (295)
Q Consensus 105 IIfL~g~I~d---~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AA 181 (295)
-|||+|+|++ .+++.+.+.|.+++.+ ++|.|+||||| |++.++++||+.|+.++.||.|++.|.|+
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspG--------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPG--------GDVFAGLAIYNALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEEEEcchHH
Confidence 4899999999 7999999999988653 89999999999 99999999999999999999999999999
Q ss_pred hHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCH
Q 022570 182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSP 261 (295)
Q Consensus 182 S~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA 261 (295)
|+|++|+++| ++|++.|+++||+|+|.++..|+..+++...++++++++.+.+.|++++|++.+++++++.+++||+|
T Consensus 71 s~g~~ia~a~--d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 71 SAASVIAMAG--DEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred hHHHHHHhcC--CeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 9999999999 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeeEE
Q 022570 262 SEAVEYGIIDKV 273 (295)
Q Consensus 262 ~EAleyGLID~I 273 (295)
+||+++||||+|
T Consensus 149 ~eA~~~GliD~v 160 (160)
T cd07016 149 QEAVELGFADEI 160 (160)
T ss_pred HHHHHcCCCCcC
Confidence 999999999986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.97 E-value=1.5e-30 Score=228.57 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=142.0
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEe---ccch
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW 181 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~---G~AA 181 (295)
+|-+.|.|++.....+...|...+ +++.+.|.|+||||| |.+.++++|||+|+..+.||.|+|. |.|+
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPG--------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~Aa 73 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPG--------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAA 73 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCC--------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeeh
Confidence 477899999988888888777665 457899999999999 9999999999999999999999999 9999
Q ss_pred hHHHHHHhcccCCCEEeccCceeEEeccccccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 022570 182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQ-----ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP 256 (295)
Q Consensus 182 S~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~-----asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd 256 (295)
|+|++|+++|+ +|++.|+++++.|+|..+ .|+ ..|.++...++.++++ ++++||++.+.++++++++
T Consensus 74 Sag~~I~~a~~--~i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~ 145 (172)
T cd07015 74 SAGTYIALGSH--LIAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKD 145 (172)
T ss_pred hHHHHHHHhcC--ceEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhh
Confidence 99999999995 699999999999999865 355 6688888888888877 9999999999999999999
Q ss_pred cccCHHHHHHcCCeeEEccCCC
Q 022570 257 KYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 257 ~~msA~EAleyGLID~Ii~~~~ 278 (295)
+|||++||++||+||.|..+.+
T Consensus 146 ~~lta~EA~~~G~iD~ia~~~~ 167 (172)
T cd07015 146 LSLTPEEALKYGVIEVVARDIN 167 (172)
T ss_pred cCcCHHHHHHcCCceeeeCCHH
Confidence 9999999999999999998743
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.97 E-value=9.8e-30 Score=217.27 Aligned_cols=159 Identities=22% Similarity=0.388 Sum_probs=150.4
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEeccchhHH
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~g 184 (295)
+|||+|+|++.+.+.+++.|..++.++..+.|.|++|||| |++.++..|++.|+.++.||.+++.|.|+|+|
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~G--------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g 72 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPG--------GRVDAGMNIVDALQASRKPVIAYVGGQAASAG 72 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCC--------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHH
Confidence 5899999999999999999999998888999999999999 99999999999999999999999999999999
Q ss_pred HHHHhcccCCCEEeccCceeEEeccccccccch--HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHH
Q 022570 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQA--TDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPS 262 (295)
Q Consensus 185 alIlaaG~kgkR~alPnS~iMIHqp~~g~~G~a--sDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~ 262 (295)
++|+++| ++|++.|++++++|+|..+..|.. .+.+...+.+..+++.+.+.+++++|++.+++++.+.++.||+|+
T Consensus 73 ~~la~~~--d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~ 150 (161)
T cd00394 73 YYIATAA--NKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQ 150 (161)
T ss_pred HHHHhCC--CEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHH
Confidence 9999999 589999999999999997766644 778877889999999999999999999999999999999999999
Q ss_pred HHHHcCCeeEE
Q 022570 263 EAVEYGIIDKV 273 (295)
Q Consensus 263 EAleyGLID~I 273 (295)
||+++||||+|
T Consensus 151 eA~~~GLvD~i 161 (161)
T cd00394 151 EALEYGLVDAL 161 (161)
T ss_pred HHHHcCCcCcC
Confidence 99999999986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.94 E-value=1.4e-25 Score=197.96 Aligned_cols=161 Identities=16% Similarity=0.232 Sum_probs=141.5
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEe---ccch
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW 181 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~---G~AA 181 (295)
+|.|.|+|++..++.+.++|..++.+ +.+.|.|+||||| |+++++..||+.|..++.||.+.+. |.|+
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpG--------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~Aa 73 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPG--------GLLDSTREIVQAILASPVPVVVYVYPSGARAA 73 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCC--------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCch
Confidence 57899999999999999999998854 4899999999999 9999999999999999999999998 9999
Q ss_pred hHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCH
Q 022570 182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSP 261 (295)
Q Consensus 182 S~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA 261 (295)
|+|++|+++| ++|++.|+++|++|+|..+..+...+...+.+.+..+.. +...|++++|++.+.+++++.++.||++
T Consensus 74 sgG~~iala~--D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a 150 (187)
T cd07020 74 SAGTYILLAA--HIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTA 150 (187)
T ss_pred hHHHHHHHhC--CceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecH
Confidence 9999999999 679999999999999985544433344445555555554 5778999999999999999999999999
Q ss_pred HHHHHcCCeeEEccCC
Q 022570 262 SEAVEYGIIDKVLYTE 277 (295)
Q Consensus 262 ~EAleyGLID~Ii~~~ 277 (295)
+||+++||||+|++..
T Consensus 151 ~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 151 EEALKLGVIDLIAADL 166 (187)
T ss_pred HHHHHcCCcccccCCH
Confidence 9999999999999775
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.90 E-value=1.7e-22 Score=178.22 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=135.4
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEeccchhHH
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~g 184 (295)
+|.+.|+|++..+..+...|.....+ +.+.|.|+||||| |.++++..||+.|...+.||.+++-|.|+|+|
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspG--------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG 73 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPG--------GRVDSALEIVDLILNSPIPTIAYVNDRAASAG 73 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcC--------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHH
Confidence 57789999999888888877776654 4899999999999 99999999999999999999999999999999
Q ss_pred HHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC--------
Q 022570 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP-------- 256 (295)
Q Consensus 185 alIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd-------- 256 (295)
++|++++ +++++.|+++++.|+|.....++..+ +-+.+....+.+-|++++|++.+.++++++++
T Consensus 74 ~~ia~a~--d~i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~ 146 (178)
T cd07021 74 ALIALAA--DEIYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGI 146 (178)
T ss_pred HHHHHhC--CeEEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccc
Confidence 9999999 68999999999999998655443322 22334444556679999999999999999998
Q ss_pred -----cccCHHHHHHcCCeeEEccCC
Q 022570 257 -----KYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 257 -----~~msA~EAleyGLID~Ii~~~ 277 (295)
.|||++||+++|++|.|..+.
T Consensus 147 ~~~~~l~lta~eA~~~g~~d~ia~~~ 172 (178)
T cd07021 147 KGGELLTLTADEALKVGYAEGIAGSL 172 (178)
T ss_pred cccceeeeCHHHHHHhCCeEEEECCH
Confidence 599999999999999997754
No 20
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.78 E-value=7.3e-18 Score=150.65 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=135.0
Q ss_pred EEEEcceeC---cchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhc---CCCEEEEEec
Q 022570 105 IVYLGMSFV---PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVG 178 (295)
Q Consensus 105 IIfL~g~I~---d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~i---k~~V~Tv~~G 178 (295)
+|++.|+|+ +.+...+..+|..++.++..+.|.|++|||| |++..+..|++.++.+ ++||.+++-|
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~G--------g~~~~~~~i~~~i~~~~~~~kpvia~v~g 75 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPG--------GSVVASEEIYREIRRLRKAKKPVVASMGD 75 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCC--------CCHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 688999999 7899999999999998888999999999999 9999999999998766 4699999999
Q ss_pred cchhHHHHHHhcccCCCEEeccCceeE------Ee------------ccccccccc------------hHHHHHHHHHHH
Q 022570 179 NAWGEAALLLGAGAKGNRAALPSSTIM------IK------------QPIGRIEGQ------------ATDVEIARKEMK 228 (295)
Q Consensus 179 ~AAS~galIlaaG~kgkR~alPnS~iM------IH------------qp~~g~~G~------------asDi~i~a~ei~ 228 (295)
.|+|+|..|++++ ++|++.|++.+. .| ++.....|. ..+.+.....+.
T Consensus 76 ~~~s~g~~lA~aa--D~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~ 153 (208)
T cd07023 76 VAASGGYYIAAAA--DKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVD 153 (208)
T ss_pred cchhHHHHHHhhC--CEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999998888 689999999873 33 111111121 224555566788
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 229 NVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 229 ~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
.+.+.+.+.+++.+|++.+++++..+.+.| ++++|+++||||+|.+.
T Consensus 154 ~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~~ 200 (208)
T cd07023 154 DIYDQFVDVVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGGL 200 (208)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCCH
Confidence 899999999999999999999998887665 89999999999999864
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.78 E-value=1.6e-17 Score=148.83 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=132.6
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcC--CCEEEEEeccchh
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWG 182 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik--~~V~Tv~~G~AAS 182 (295)
+|.|.|+|+ .+...+...|..+..++..+.|.|++|||| |++..+..|++.|+.++ +||.+++.|.|+|
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~G--------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s 74 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPG--------GTVVASEEIYEKLKKLKAKKPVVASMGGVAAS 74 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCC--------CCHHHHHHHHHHHHHhcCCCCEEEEECCccch
Confidence 688999998 567888888888887778899999999999 99999999999999998 8999999999999
Q ss_pred HHHHHHhcccCCCEEeccCceeEE------ecccc------c------cccc------------hHHHHHHHHHHHHHHH
Q 022570 183 EAALLLGAGAKGNRAALPSSTIMI------KQPIG------R------IEGQ------------ATDVEIARKEMKNVKA 232 (295)
Q Consensus 183 ~galIlaaG~kgkR~alPnS~iMI------Hqp~~------g------~~G~------------asDi~i~a~ei~~~~~ 232 (295)
.|.+|++++ ++|++.|++.+.. |.... | ..|. ..+-+.....++.+.+
T Consensus 75 ~g~~la~aa--D~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~ 152 (207)
T TIGR00706 75 GGYYIAMAA--DEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYE 152 (207)
T ss_pred HHHHHHhcC--CEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999998 6899999998543 32210 1 1121 1233444456778889
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 233 ELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 233 ~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
.+.+.+++.+|++.+++++.++... |+++||+++||||+|...
T Consensus 153 ~f~~~va~~R~~~~~~~~~~~~~~~-~~~~~A~~~gLvD~i~~~ 195 (207)
T TIGR00706 153 QFVQVVAKGRNLPVEDVKKFADGRV-FTGRQALKLRLVDKLGTE 195 (207)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCCc-ccHHHHHHcCCCcccCCH
Confidence 9999999999999999999888765 599999999999999875
No 22
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.76 E-value=2.9e-17 Score=143.32 Aligned_cols=144 Identities=20% Similarity=0.166 Sum_probs=124.8
Q ss_pred hHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhc---CCCEEEEEeccchhHHHHHHhccc
Q 022570 116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAALLLGAGA 192 (295)
Q Consensus 116 ~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~i---k~~V~Tv~~G~AAS~galIlaaG~ 192 (295)
+.+.+...|..++.++..+.|.|.+||+| |++.....+++.++.+ ++||.+++-|.|+|.|..|++++
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~g--------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~- 93 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPA- 93 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhC-
Confidence 46788888988888888899999999999 9988887887766544 68999999999999999999998
Q ss_pred CCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeE
Q 022570 193 KGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDK 272 (295)
Q Consensus 193 kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~ 272 (295)
+.|++.|+++|++|....+ .......+..+.+.+.+.+++.+|++.+++.+++....+|+|+||+++||||+
T Consensus 94 -D~i~a~~~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~ 165 (177)
T cd07014 94 -NYIVANPSTLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDS 165 (177)
T ss_pred -CEEEECCCCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCccc
Confidence 6899999999999977654 11223457789999999999999999999999998889999999999999999
Q ss_pred EccC
Q 022570 273 VLYT 276 (295)
Q Consensus 273 Ii~~ 276 (295)
|...
T Consensus 166 v~~~ 169 (177)
T cd07014 166 LGSF 169 (177)
T ss_pred CCCH
Confidence 9864
No 23
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.73 E-value=2.4e-16 Score=141.89 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=124.8
Q ss_pred chHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcC--CCEEEEEeccchhHHHHHHhccc
Q 022570 115 SVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWGEAALLLGAGA 192 (295)
Q Consensus 115 ~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik--~~V~Tv~~G~AAS~galIlaaG~ 192 (295)
.+...+++.|..++.++..+.|.|.+|||| |++.....|++.|+.++ +||.+++.|.|+|.|.+|++++
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~g--------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~a- 95 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPG--------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAA- 95 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCC--------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcC-
Confidence 567899999999988888999999999999 99999999999999998 9999999999999999999998
Q ss_pred CCCEEeccCceeEE------eccccc------------cccc------------hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022570 193 KGNRAALPSSTIMI------KQPIGR------------IEGQ------------ATDVEIARKEMKNVKAELVKLYAKHF 242 (295)
Q Consensus 193 kgkR~alPnS~iMI------Hqp~~g------------~~G~------------asDi~i~a~ei~~~~~~i~~iya~~T 242 (295)
+++++.|++++.. |....+ ..|. ..+-+...+.+..+.+.+.+.+++.+
T Consensus 96 -D~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R 174 (214)
T cd07022 96 -DRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNR 174 (214)
T ss_pred -CEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6899999999643 222111 0121 23344445667789999999999999
Q ss_pred CCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 243 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 243 G~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
|++.+++.+.+ ...|+++||+++||||+|++.
T Consensus 175 ~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~ 206 (214)
T cd07022 175 GLSAAAVRATE--GGVFRGQEAVAAGLADAVGTL 206 (214)
T ss_pred CCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCH
Confidence 99999999888 556799999999999999764
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.73 E-value=1.2e-16 Score=163.29 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=133.2
Q ss_pred EEEEcceeCcc-------hHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhc---CCCEEE
Q 022570 105 IVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFT 174 (295)
Q Consensus 105 IIfL~g~I~d~-------~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~i---k~~V~T 174 (295)
+|++.|+|.+. ..+.+..+|..+..++..|.|.|+||||| |++.++..|++.|+.. ++||.+
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpG--------Gs~~ase~i~~~i~~~~~~gKPVva 383 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPG--------GSVFASEIIRRELARAQARGKPVIV 383 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCC--------CCHHHHHHHHHHHHHHHhCCCcEEE
Confidence 79999999852 25677778777777777899999999999 9999999999999765 379999
Q ss_pred EEeccchhHHHHHHhcccCCCEEeccCcee------EEecc------------cccccc-----------chHHHHHHHH
Q 022570 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTI------MIKQP------------IGRIEG-----------QATDVEIARK 225 (295)
Q Consensus 175 v~~G~AAS~galIlaaG~kgkR~alPnS~i------MIHqp------------~~g~~G-----------~asDi~i~a~ 225 (295)
.+.|.|||.|.+|.+++ +++++.|++.+ +.+.. .....| +..+.+....
T Consensus 384 ~~~g~aaSggY~iA~aa--D~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~ 461 (584)
T TIGR00705 384 SMGAMAASGGYWIASAA--DYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQL 461 (584)
T ss_pred EECCccccHHHHHHHhC--CEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHH
Confidence 99999999999999999 68999999986 54421 101111 3456667778
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEcc
Q 022570 226 EMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 275 (295)
Q Consensus 226 ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~ 275 (295)
.++...+.|.+.+++.+|++.++++++++...| +++||+++||||+|++
T Consensus 462 ~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 462 SVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALGG 510 (584)
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCCC
Confidence 899999999999999999999999999987665 9999999999999964
No 25
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.67 E-value=3.5e-15 Score=134.15 Aligned_cols=161 Identities=18% Similarity=0.128 Sum_probs=128.0
Q ss_pred EEEEcceeCcch-------HHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhh---cCCCEEE
Q 022570 105 IVYLGMSFVPSV-------TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFT 174 (295)
Q Consensus 105 IIfL~g~I~d~~-------a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~---ik~~V~T 174 (295)
+|.+.|+|.+.. ...+...|..+..++..+.|.|.+|||| |++.+...+++.|+. .++||.+
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~G--------g~~~~~~~~~~~l~~~~~~~kpVia 75 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVV 75 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCC--------cCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 466777776532 3678888888888878899999999999 999998888887654 4679999
Q ss_pred EEeccchhHHHHHHhcccCCCEEeccCceeEEeccc------------cc-------ccc----------chHHHHHHHH
Q 022570 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI------------GR-------IEG----------QATDVEIARK 225 (295)
Q Consensus 175 v~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~------------~g-------~~G----------~asDi~i~a~ 225 (295)
++.|.|+|.|.+|.+++ +.+++.|++++...-.. .| ..| ..++-+....
T Consensus 76 ~v~g~a~s~gy~la~~a--D~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~ 153 (211)
T cd07019 76 SAGGAAASGGYWISTPA--NYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQL 153 (211)
T ss_pred EECCeehhHHHHHHHhC--CEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHH
Confidence 99999999999999998 68999999987533211 00 002 1223333446
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 226 EMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 226 ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
.++.+.+.+.+.++++++++++++++..+ +.+|+++||+++||||+|.+.
T Consensus 154 ~ld~~~~~f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~ 203 (211)
T cd07019 154 SIENGYKRFITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDF 203 (211)
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCCH
Confidence 68899999999999999999999999766 478899999999999999875
No 26
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.67 E-value=1.7e-15 Score=144.51 Aligned_cols=162 Identities=20% Similarity=0.199 Sum_probs=130.1
Q ss_pred EEEEcceeCcch-------HHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCC--CEEEE
Q 022570 105 IVYLGMSFVPSV-------TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP--PIFTL 175 (295)
Q Consensus 105 IIfL~g~I~d~~-------a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~--~V~Tv 175 (295)
+|.+.|.|.+.. .+.+.+.|..+..+++.|.|.|.||||| |+|.++..||+.++.++. ||++.
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPG--------G~v~as~~i~~~l~~l~~~~PV~v~ 134 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPG--------GSVVASELIARALKRLRAKKPVVVS 134 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcC--------CchhHHHHHHHHHHHHhhcCCEEEE
Confidence 467888887544 5677777777888888999999999999 999999999999999976 69999
Q ss_pred EeccchhHHHHHHhcccCCCEEeccCceeE------Eecccc------c------cccc------------hHHHHHHHH
Q 022570 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIM------IKQPIG------R------IEGQ------------ATDVEIARK 225 (295)
Q Consensus 176 ~~G~AAS~galIlaaG~kgkR~alPnS~iM------IHqp~~------g------~~G~------------asDi~i~a~ 225 (295)
+-++|||.|.+|.+++ ++.+|.|+|.+. .|.... | ..|. .++.++..+
T Consensus 135 v~~~AASGGY~IA~aA--d~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~ 212 (317)
T COG0616 135 VGGYAASGGYYIALAA--DKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQK 212 (317)
T ss_pred ECCeecchhhhhhccC--CEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHH
Confidence 9999999999999999 689999999853 222110 0 1121 233444456
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 226 EMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 226 ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
+++...+.|.+.+++.++.+.+++.+..++ ..+++++|++.||||++++..
T Consensus 213 ~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g-~v~~g~~A~~~gLVDelg~~~ 263 (317)
T COG0616 213 EIDETYDEFVDKVAEGRGLSDEAVDKLATG-RVWTGQQALELGLVDELGGLD 263 (317)
T ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHhcc-ceecHHHhhhcCCchhcCCHH
Confidence 788899999999999999999997776665 555999999999999999764
No 27
>PRK10949 protease 4; Provisional
Probab=99.58 E-value=5.6e-14 Score=144.65 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=129.8
Q ss_pred EEEEcceeCcc-------hHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhc---CCCEEE
Q 022570 105 IVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFT 174 (295)
Q Consensus 105 IIfL~g~I~d~-------~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~i---k~~V~T 174 (295)
+|++.|.|.+. ..+.++.+|..+..++..|.|.|.||||| |++.++..|++.|+.. ++||++
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpG--------Gs~~ase~i~~~i~~~r~~gKPVva 401 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVV 401 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCC--------CcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 68999999763 35678889998888889999999999999 9999999999999765 379988
Q ss_pred EEeccchhHHHHHHhcccCCCEEeccCceeE------Eecccc------c------cccc-----------hHHHHHHHH
Q 022570 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIM------IKQPIG------R------IEGQ-----------ATDVEIARK 225 (295)
Q Consensus 175 v~~G~AAS~galIlaaG~kgkR~alPnS~iM------IHqp~~------g------~~G~-----------asDi~i~a~ 225 (295)
.+-|.|||.|.+|.+++ ++.++.|.+.+. .|.-.. | ..|. .++-+....
T Consensus 402 s~~~~aASggY~iA~aa--d~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~ 479 (618)
T PRK10949 402 SMGGMAASGGYWISTPA--NYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQL 479 (618)
T ss_pred EECCCCccHHHHHHHhc--CEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHH
Confidence 88899999999999998 679999987632 332110 1 0111 223344446
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 226 EMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 226 ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
.++...+.|.+..++.+|++.+++++..+. ..|++++|+++||||++++-+
T Consensus 480 ~ld~~y~~F~~~Va~~R~~~~~~v~~ia~G-rv~tg~~A~~~GLVD~lG~~~ 530 (618)
T PRK10949 480 SIENGYKRFITLVADSRHKTPEQIDKIAQG-HVWTGQDAKANGLVDSLGDFD 530 (618)
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHhcC-CcccHHHHHHcCCCccCCCHH
Confidence 678889999999999999999999997775 566999999999999998743
No 28
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.53 E-value=2.1e-13 Score=123.57 Aligned_cols=156 Identities=18% Similarity=0.147 Sum_probs=124.3
Q ss_pred cceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhc---CCCEEEEEeccchhHHH
Q 022570 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAA 185 (295)
Q Consensus 109 ~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~i---k~~V~Tv~~G~AAS~ga 185 (295)
.+..+......++..|..+..++..+.|.|.+|||| |.+.....|++.|+.+ ++||.+++-| |+|.|.
T Consensus 23 ~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~g--------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy 93 (222)
T cd07018 23 GGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLS--------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQY 93 (222)
T ss_pred cCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCC--------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhh
Confidence 344556678899999999998888999999999999 9999999999999765 4789888776 888888
Q ss_pred HHHhcccCCCEEeccCceeEEeccccc------------------cccc--------------hHHHHHHHHHHHHHHHH
Q 022570 186 LLLGAGAKGNRAALPSSTIMIKQPIGR------------------IEGQ--------------ATDVEIARKEMKNVKAE 233 (295)
Q Consensus 186 lIlaaG~kgkR~alPnS~iMIHqp~~g------------------~~G~--------------asDi~i~a~ei~~~~~~ 233 (295)
+|.+++ +++++.|++.+.+.-.... ..|. ..+-+...+.+..+.+.
T Consensus 94 ~lasaa--d~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~ 171 (222)
T cd07018 94 YLASAA--DEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQ 171 (222)
T ss_pred hhhhhC--CEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHH
Confidence 888887 6899999999988743211 0111 11223334556778899
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 234 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 234 i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
+.+..++.++++.+++++..+. ..+++++|++.||||+|...
T Consensus 172 f~~~Va~~R~~~~~~~~~~~~~-~~~~~~~A~~~GLvD~i~~~ 213 (222)
T cd07018 172 YLADVAASRGLSPDALEALIDL-GGDSAEEALEAGLVDGLAYR 213 (222)
T ss_pred HHHHHHHHcCCCHHHHHHHHHc-CCcHHHHHHHCCCCCcCCcH
Confidence 9999999999999999998885 56699999999999999864
No 29
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.46 E-value=2.3e-12 Score=123.89 Aligned_cols=161 Identities=12% Similarity=0.103 Sum_probs=110.5
Q ss_pred EEEEcceeCcchHHHHHHHHHhh-hhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHH---hhcCCCEEEEEeccc
Q 022570 105 IVYLGMSFVPSVTELILAEFLYL-QYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVM---GYVKPPIFTLCVGNA 180 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L-~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m---~~ik~~V~Tv~~G~A 180 (295)
+|.+.|.|+......+..++..+ ....+.+.|.|.||||| |+|...--++..+ +..+.||++++.+.|
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpG--------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~A 165 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPG--------GVVHGYGLAASQLQRLRDAGIPLTVAVDKVA 165 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCC--------CchhHHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 46788999976554443333321 11223378999999999 9997754444444 444579988888999
Q ss_pred hhHHHHHHhcccCCCEEeccCceeEEecccc------------c------cccc------------hHHHHHHHHHHHHH
Q 022570 181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIG------------R------IEGQ------------ATDVEIARKEMKNV 230 (295)
Q Consensus 181 AS~galIlaaG~kgkR~alPnS~iMIHqp~~------------g------~~G~------------asDi~i~a~ei~~~ 230 (295)
||.|.++.+++ ++.++.|.+.+...-... | ..|. ..+-+...++++.+
T Consensus 166 ASggY~iAsaA--D~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~ 243 (330)
T PRK11778 166 ASGGYMMACVA--DKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEET 243 (330)
T ss_pred hhHHHHHHHhC--CEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999988 689999999865432210 0 1121 22334455667888
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 231 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 231 ~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
.+.|.+..+++++ ...+++..+.. .|++++|+++||||+|++.+.
T Consensus 244 y~~F~~~Va~~R~--~l~~~~va~G~-v~~g~~Al~~GLVD~Ig~~dd 288 (330)
T PRK11778 244 HQLFKDFVQRYRP--QLDIDKVATGE-HWYGQQALELGLVDEIQTSDD 288 (330)
T ss_pred HHHHHHHHHhcCC--cCCHHHHHhCC-CcCHHHHHHCCCCCcCCCHHH
Confidence 8899999998775 23445555554 469999999999999988643
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.8e-11 Score=120.67 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=130.1
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEe---ccch
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW 181 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~---G~AA 181 (295)
+|.++|+|++.+++.+.+.|-..+.+ ....+.|.+|+|| |-+++...|.+.+..++.||..++. +.||
T Consensus 30 vi~i~g~I~~~s~~~l~r~l~~A~~~-~a~~vvl~ldTPG--------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~Aa 100 (436)
T COG1030 30 VIEIDGAIDPASADYLQRALQSAEEE-NAAAVVLELDTPG--------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAA 100 (436)
T ss_pred EEEecCccCHHHHHHHHHHHHHHHhC-CCcEEEEEecCCC--------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchh
Confidence 57799999999999999998876654 4689999999999 9999999999999999999888887 4799
Q ss_pred hHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCH
Q 022570 182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSP 261 (295)
Q Consensus 182 S~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA 261 (295)
|+|++|+.+. +.-+|.|++.+.--+|-.+....+.+-. ..+......+-.++..|+..+..++...++.-+++
T Consensus 101 SAGtyI~m~~--hiaaMAPgT~iGaa~Pi~~~g~~~~~~~-----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a 173 (436)
T COG1030 101 SAGTYILMAT--HIAAMAPGTNIGAATPIAGGGTSAKEAN-----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTA 173 (436)
T ss_pred chhhHHHHhc--ChhhhCCCCcccccceecCCCCCccchh-----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCCh
Confidence 9999999998 4678999999998888644322222211 22333344556889999999999999999999999
Q ss_pred HHHHHcCCeeEEccCC
Q 022570 262 SEAVEYGIIDKVLYTE 277 (295)
Q Consensus 262 ~EAleyGLID~Ii~~~ 277 (295)
+||+++|+||-|-.+.
T Consensus 174 ~eA~~~~vid~iA~~~ 189 (436)
T COG1030 174 EEALRQGVIDLIARDL 189 (436)
T ss_pred hHHHhcCccccccCCH
Confidence 9999999999887654
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.15 E-value=1.3e-09 Score=102.18 Aligned_cols=146 Identities=19% Similarity=0.155 Sum_probs=108.2
Q ss_pred cceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEeccchhHHHHHH
Q 022570 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 188 (295)
Q Consensus 109 ~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~galIl 188 (295)
...|+.+.++.+...+... ++.++|.|.||||| |.|.++..|.+.++..+.++++++-..|.|+|++|.
T Consensus 69 ~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpG--------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIA 137 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPG--------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIA 137 (285)
T ss_pred ceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCC--------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHH
Confidence 4557777788887776544 34678999999999 999999999999999999999999999999999999
Q ss_pred hcccCCCEEeccCceeEEeccccccc------------c--chHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 022570 189 GAGAKGNRAALPSSTIMIKQPIGRIE------------G--QATDV-----EIARKEMKNVKAELVKLYAKHFGKTPEQI 249 (295)
Q Consensus 189 aaG~kgkR~alPnS~iMIHqp~~g~~------------G--~asDi-----~i~a~ei~~~~~~i~~iya~~TG~s~e~I 249 (295)
+++ ++-+|.|+|.+.=-.|..+-. + ..+|. ....+.+..+++.+.+++..+ .+.++.
T Consensus 138 LaA--DeIvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~~--~~~eka 213 (285)
T PF01972_consen 138 LAA--DEIVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKDK--MDEEKA 213 (285)
T ss_pred HhC--CeEEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHH
Confidence 999 679999999987555543210 0 01110 111245666777777777654 455555
Q ss_pred HHHh---c-----CCcccCHHHHHHcCC
Q 022570 250 EADI---R-----RPKYFSPSEAVEYGI 269 (295)
Q Consensus 250 ~~~~---~-----rd~~msA~EAleyGL 269 (295)
++.. . -|+-++++||+++||
T Consensus 214 ~~ia~~L~~g~~tHdypi~~eea~~lGL 241 (285)
T PF01972_consen 214 EEIAEKLSSGKWTHDYPITVEEAKELGL 241 (285)
T ss_pred HHHHHHhcCCCCCCCCCCCHHHHHHcCC
Confidence 4443 3 366689999999998
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.94 E-value=1.7e-08 Score=103.74 Aligned_cols=153 Identities=7% Similarity=-0.022 Sum_probs=114.9
Q ss_pred cchHHHHHHHHHhhhhcCCCCCeEEEEcC-CCCCCCCCCCCcHHHHHHHHHHHhhcC---CCEEEEEeccchhHHHHHHh
Q 022570 114 PSVTELILAEFLYLQYEDVEKPIYLYINS-TGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLG 189 (295)
Q Consensus 114 d~~a~~iiaqLl~L~~ed~~k~I~LyINS-PG~~~~~~~~G~V~aglaIyd~m~~ik---~~V~Tv~~G~AAS~galIla 189 (295)
+.....++.+|..+..++..+.|.|.||+ || |.+.....|++.|+..+ +||.++..+ ++|.+.+|.+
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g--------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs 145 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSG--------WDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLAS 145 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCC--------CCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhh
Confidence 34678999999999999999999999996 57 78888889999998664 688776544 3455544444
Q ss_pred cccCCCEEeccCceeEEeccccc------------------ccc--------------chHHHHHHHHHHHHHHHHHHHH
Q 022570 190 AGAKGNRAALPSSTIMIKQPIGR------------------IEG--------------QATDVEIARKEMKNVKAELVKL 237 (295)
Q Consensus 190 aG~kgkR~alPnS~iMIHqp~~g------------------~~G--------------~asDi~i~a~ei~~~~~~i~~i 237 (295)
++ ++.|+.|.+.+.++-.... ..| ...+-+.....+..+.+.+.+.
T Consensus 146 ~A--D~I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~ 223 (584)
T TIGR00705 146 FA--DEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSS 223 (584)
T ss_pred hC--CEEEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44 6899999999876643210 011 1222333445677899999999
Q ss_pred HHHHhCCCHHHHHHHhcCCcc-------cCHHHHHHcCCeeEEccCC
Q 022570 238 YAKHFGKTPEQIEADIRRPKY-------FSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 238 ya~~TG~s~e~I~~~~~rd~~-------msA~EAleyGLID~Ii~~~ 277 (295)
+++.++++.+++.+..+.-.| .+|++|++.||||+|...+
T Consensus 224 Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~d 270 (584)
T TIGR00705 224 VSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYA 270 (584)
T ss_pred HHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHH
Confidence 999999999999998876444 2899999999999998653
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.90 E-value=1.3e-08 Score=87.30 Aligned_cols=109 Identities=21% Similarity=0.232 Sum_probs=80.2
Q ss_pred HhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEecccc------------c------cccc----------
Q 022570 165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIG------------R------IEGQ---------- 216 (295)
Q Consensus 165 m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~------------g------~~G~---------- 216 (295)
.+..+.||++++.|.++|.|.+|++++ ++.++.|.+.+....... | ..|+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~a--d~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAA--DEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTS--SEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcC--CEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 355678999999999999999998888 679999999876543321 0 0121
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 217 --ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 217 --asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
..+-+...+.+..+.+.+.+.+++.+|++.++++++.+. ..|++++|+++||||+|...
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~~ 140 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGTF 140 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCCH
Confidence 223344456678899999999999999999999998887 66799999999999999865
No 34
>PRK10949 protease 4; Provisional
Probab=98.76 E-value=1.5e-07 Score=97.42 Aligned_cols=153 Identities=12% Similarity=0.107 Sum_probs=111.3
Q ss_pred cchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHH-HHHHHHHHhhcC---CCEEEEEeccchhHHHHHHh
Q 022570 114 PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETE-AFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLG 189 (295)
Q Consensus 114 d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~a-glaIyd~m~~ik---~~V~Tv~~G~AAS~galIla 189 (295)
+.....++..|..+..++..+.|.|.||||| |...+ ...|++.|+..+ +||..+ |-.++.+.++++
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~g--------G~~~a~~~eI~~ai~~fk~sGKpVvA~--~~~~~s~~YyLA 163 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFA--------GADQPSMQYIGKALREFRDSGKPVYAV--GDSYSQGQYYLA 163 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCC--------CccHHHHHHHHHHHHHHHHhCCeEEEE--ecCccchhhhhh
Confidence 4556789999999999999999999999998 76554 468999887765 577654 555555666665
Q ss_pred cccCCCEEeccCceeEEeccccc------------------cccc--------------hHHHHHHHHHHHHHHHHHHHH
Q 022570 190 AGAKGNRAALPSSTIMIKQPIGR------------------IEGQ--------------ATDVEIARKEMKNVKAELVKL 237 (295)
Q Consensus 190 aG~kgkR~alPnS~iMIHqp~~g------------------~~G~--------------asDi~i~a~ei~~~~~~i~~i 237 (295)
+.+ ++.|+.|.+.+.++-.... -.|. ..+-+.....+..+.+.+.+.
T Consensus 164 SaA-D~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~ 242 (618)
T PRK10949 164 SFA-NKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNT 242 (618)
T ss_pred hhC-CEEEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 554 7899999999887754321 0111 112233334567888999999
Q ss_pred HHHHhCCCHHHHHHHhcC-------CcccCHHHHHHcCCeeEEccCC
Q 022570 238 YAKHFGKTPEQIEADIRR-------PKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 238 ya~~TG~s~e~I~~~~~r-------d~~msA~EAleyGLID~Ii~~~ 277 (295)
+++.++++.+++....++ .--++|++|++.||||+|.+.+
T Consensus 243 VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~d 289 (618)
T PRK10949 243 VAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSA 289 (618)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHH
Confidence 999999999999654432 1235999999999999998753
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.60 E-value=1.2e-06 Score=76.23 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=96.4
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCC--------------CcHHHHHHHHHHHh
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKL--------------GYETEAFAIYDVMG 166 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~--------------G~V~aglaIyd~m~ 166 (295)
|.|+.| ++.++.+.+...+..++.++..+-|.|.-+ ++.-..|-.+ ..+.....++..+.
T Consensus 12 i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (195)
T cd06558 12 ITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQELLRALL 90 (195)
T ss_pred EEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHH
Confidence 455554 355778888888888876554444444433 2211112111 11234456667777
Q ss_pred hcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc---cchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022570 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELVKLYAKHFG 243 (295)
Q Consensus 167 ~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~---G~asDi~i~a~ei~~~~~~i~~iya~~TG 243 (295)
.++.|+.+.+-|.|.+.|+.+++++ +.|++.++++|.+.....|.. |.... +.+..|
T Consensus 91 ~~~~p~Ia~v~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~~G~~p~~g~~~~------------------l~~~~g 150 (195)
T cd06558 91 RLPKPVIAAVNGAALGGGLELALAC--DIRIAAEDAKFGLPEVKLGLVPGGGGTQR------------------LPRLVG 150 (195)
T ss_pred cCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEEechhhhcCCCCCCcHHHH------------------HHHHhC
Confidence 8889999999999999999999988 789999999998877654432 11111 111112
Q ss_pred CCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 244 KTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 244 ~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
.....+.+-....++++||+++||||+|+..
T Consensus 151 --~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 151 --PARARELLLTGRRISAEEALELGLVDEVVPD 181 (195)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence 3333444444677899999999999999986
No 36
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.28 E-value=2.1e-05 Score=71.50 Aligned_cols=150 Identities=15% Similarity=0.201 Sum_probs=94.4
Q ss_pred EEEcce----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH-----------HH-HHHHHHHHhhc
Q 022570 106 VYLGMS----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE-----------TE-AFAIYDVMGYV 168 (295)
Q Consensus 106 IfL~g~----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V-----------~a-glaIyd~m~~i 168 (295)
|.|+.| ++.++...+...+..++.++..+-| .|.+.|.. -.|-.+..+ .. ...+++.|..+
T Consensus 21 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~v--Vltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (222)
T PRK05869 21 LLLSRPPTNALTRQVYREIVAAANELGRRDDVAAV--ILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAI 98 (222)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEE--EEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence 445544 6667788888888888765544443 34555522 122222111 01 12466678888
Q ss_pred CCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 022570 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPE 247 (295)
Q Consensus 169 k~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e 247 (295)
+.||.+.+-|.|.+.|..|.+++ +.|++.++++|-+-....|.. +-.. . .. +.+..| ..
T Consensus 99 ~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~-~-------~~--------l~~~ig--~~ 158 (222)
T PRK05869 99 PKPTVAAITGYALGAGLTLALAA--DWRVSGDNVKFGATEILAGLAPSGDG-M-------AR--------LTRAAG--PS 158 (222)
T ss_pred CCCEEEEEcCEeecHHHHHHHhC--CEEEecCCCEEcCchhccCCCCCccH-H-------HH--------HHHHhC--HH
Confidence 99999999999999999999998 689999999876654443321 1110 0 00 111122 23
Q ss_pred HHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 248 QIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 248 ~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
...+++-...+++|+||+++||||+|...+
T Consensus 159 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (222)
T PRK05869 159 RAKELVFSGRFFDAEEALALGLIDEMVAPD 188 (222)
T ss_pred HHHHHHHcCCCcCHHHHHHCCCCCEeeCch
Confidence 334444455789999999999999999643
No 37
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.26 E-value=7.3e-06 Score=78.76 Aligned_cols=144 Identities=20% Similarity=0.252 Sum_probs=96.0
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCC--CCCCCCcHHHHHHHHHHH---hhcCCCEEEEE
Q 022570 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVM---GYVKPPIFTLC 176 (295)
Q Consensus 102 ~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~--~~~~~G~V~aglaIyd~m---~~ik~~V~Tv~ 176 (295)
++++-...|.++++.+.+...-+...+. -.-||.-++||||.-- .-|.-|. +.+|...+ ...+.|+.+++
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R~m~lA~~--f~iPvVtlvDTpGa~~g~~aE~~G~---~~aia~~l~a~s~~~VP~IsVV 196 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALRLMKMAER--FKMPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARLGVPVICTV 196 (316)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCCCCCHHHHHHHH---HHHHHHHHHHHHcCCCCEEEEE
Confidence 5676677888999888887775554443 3689999999999221 0011122 23444444 55678999999
Q ss_pred eccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 022570 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP 256 (295)
Q Consensus 177 ~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd 256 (295)
+|.|+|.|++.++.+ +..+++|++.+.+=.|.+... +.++.- . -.++..+ -
T Consensus 197 iGeggsGGAla~~~a--D~v~m~~~a~~sVisPEg~a~-------Il~kd~------------~----~a~~aae----~ 247 (316)
T TIGR00513 197 IGEGGSGGALAIGVG--DKVNMLEYSTYSVISPEGCAA-------ILWKDA------------S----KAPKAAE----A 247 (316)
T ss_pred ecccccHHHhhhccC--CEEEEecCceEEecCHHHHHH-------Hhccch------------h----hHHHHHH----H
Confidence 999999999877666 679999999998888864321 111100 0 0122222 1
Q ss_pred cccCHHHHHHcCCeeEEccCCCC
Q 022570 257 KYFSPSEAVEYGIIDKVLYTEKS 279 (295)
Q Consensus 257 ~~msA~EAleyGLID~Ii~~~~~ 279 (295)
.-+||+++++.|+||+|+..+..
T Consensus 248 ~~~ta~~l~~~G~iD~II~ep~~ 270 (316)
T TIGR00513 248 MKITAPDLKELGLIDSIIPEPLG 270 (316)
T ss_pred ccCCHHHHHHCCCCeEeccCCCC
Confidence 44589999999999999997643
No 38
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.25 E-value=1.7e-05 Score=73.00 Aligned_cols=151 Identities=11% Similarity=0.114 Sum_probs=93.2
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCc-----------HHHHHHHHHHHhhc
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGY-----------ETEAFAIYDVMGYV 168 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~-----------V~aglaIyd~m~~i 168 (295)
|.|+-| ++.++.+.+...+..++.++..+-|. |.+.|.. -.|-.+.. ......+++.|..+
T Consensus 18 i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
T PRK06688 18 ITINRPDKKNALTAAMYQALADALEAAATDPAVRVVV--LTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAAL 95 (259)
T ss_pred EEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEE--EECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcC
Confidence 455554 67778888888888877654444333 3444411 12222111 11234567778888
Q ss_pred CCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 022570 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQ 248 (295)
Q Consensus 169 k~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~ 248 (295)
+.|+...+-|.|.+.|.-|++++ +.|++.++++|.+.....|..-..--.. . +.+..| ...
T Consensus 96 ~kp~Iaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~~~-------~--------l~~~~G--~~~ 156 (259)
T PRK06688 96 PKPVVAAVNGPAVGVGVSLALAC--DLVYASESAKFSLPFAKLGLCPDAGGSA-------L--------LPRLIG--RAR 156 (259)
T ss_pred CCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEecCchhhcCCCCCcchhh-------H--------HHHHhh--HHH
Confidence 89999999999999999999998 7899999999877655444311100000 0 111111 122
Q ss_pred HHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 249 IEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 249 I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
..+++-....++++||+++||||+|...+
T Consensus 157 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~ 185 (259)
T PRK06688 157 AAEMLLLGEPLSAEEALRIGLVNRVVPAA 185 (259)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 22333334568999999999999998743
No 39
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.25 E-value=2.2e-05 Score=72.57 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=96.9
Q ss_pred EEEcce----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH--------------HHHHHHHHHh
Q 022570 106 VYLGMS----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET--------------EAFAIYDVMG 166 (295)
Q Consensus 106 IfL~g~----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~--------------aglaIyd~m~ 166 (295)
|.|+.| ++.++...+.+.+..++.++..+-| .|.+.|.. -.|-.+..+. ....+++.|.
T Consensus 17 itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~v--Vl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (257)
T PRK06495 17 VTLDNPPVNALSRELRDELIAVFDEISERPDVRVV--VLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIR 94 (257)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHhhCCCceEE--EEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHH
Confidence 556665 6777888888888877765444433 33455522 1222221110 0123566677
Q ss_pred hcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 022570 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP 246 (295)
Q Consensus 167 ~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~ 246 (295)
..+.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|..|-..- +.+.. ..
T Consensus 95 ~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~~~~~------------------l~~~~--g~ 152 (257)
T PRK06495 95 ECAKPVIAAVNGPALGAGLGLVASC--DIIVASENAVFGLPEIDVGLAGGGKH------------------AMRLF--GH 152 (257)
T ss_pred hCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEeeChhhccCccccHHH------------------HHHHh--CH
Confidence 8889999999999999999999998 68999999998765555444332110 11122 23
Q ss_pred HHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 247 EQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 247 e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
....+++-....++|+||+++||||+|+..+
T Consensus 153 ~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T PRK06495 153 SLTRRMMLTGYRVPAAELYRRGVIEACLPPE 183 (257)
T ss_pred HHHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence 4445555556788999999999999998743
No 40
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.25 E-value=1.6e-05 Score=74.48 Aligned_cols=140 Identities=21% Similarity=0.251 Sum_probs=94.9
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHH----HHHHHHHH---hhcCCCEEE
Q 022570 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETE----AFAIYDVM---GYVKPPIFT 174 (295)
Q Consensus 102 ~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~a----glaIyd~m---~~ik~~V~T 174 (295)
++++...+|.++++...+...-+...+. -.-||.-.+||||.- +|...+ +..|...+ ...+.|+.+
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R~~~lA~~--~~lPvV~lvDtpGa~-----~g~~aE~~G~~~~ia~~~~~~s~~~VP~Is 141 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALRLMKQAEK--FGRPVVTFINTAGAY-----PGVGAEERGQGEAIARNLMEMSDLKVPIIA 141 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcC-----CCHhHHhccHHHHHHHHHHHHhCCCCCEEE
Confidence 5666677899999887777765544333 368999999999932 122211 23444443 445689999
Q ss_pred EEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 175 v~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
+++|.|.|.|++.++.+ +..+++|++.+.+=.|.+... +.++ + ....++..+.+
T Consensus 142 VI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v~~pe~~a~-------il~~------~----------~~~a~~aa~~~- 195 (256)
T PRK12319 142 IIIGEGGSGGALALAVA--DQVWMLENTMYAVLSPEGFAS-------ILWK------D----------GSRATEAAELM- 195 (256)
T ss_pred EEeCCcCcHHHHHhhcC--CEEEEecCceEEEcCHHHHHH-------HHhc------C----------cccHHHHHHHc-
Confidence 99999999999988876 679999999998887764321 0000 0 01112222222
Q ss_pred CCcccCHHHHHHcCCeeEEccCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~ 277 (295)
-+||.++++.|+||+|+...
T Consensus 196 ---~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 196 ---KITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred ---CCCHHHHHHCCCCcEecCCC
Confidence 34999999999999999975
No 41
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.24 E-value=2.8e-05 Score=72.64 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=90.7
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH----------------HHHHHHHHHhhcCCCEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET----------------EAFAIYDVMGYVKPPIFT 174 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~----------------aglaIyd~m~~ik~~V~T 174 (295)
++.++...+.+.+..++.++..+ .|.|.+.|.. ..|-.+..+. ....+++.|..++.||..
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr--~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 118 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVK--AVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIA 118 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 56677788888777776543333 3444555522 1222221110 012456778888999999
Q ss_pred EEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 022570 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADI 253 (295)
Q Consensus 175 v~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~ 253 (295)
.+-|.|.+.|.-|.+++ +.|++.++++|.+.....|.. +..--.. . +.+..| .....+++
T Consensus 119 aV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~~g~~~-------~--------l~~~vG--~~~a~~l~ 179 (277)
T PRK08258 119 AVDGVCAGAGAILAMAS--DLRLGTPSAKTAFLFTRVGLAGADMGACA-------L--------LPRIIG--QGRASELL 179 (277)
T ss_pred EECCeeehHHHHHHHhC--CEEEecCCCEEeccccccCcCCCCchHHH-------H--------HHHHhC--HHHHHHHH
Confidence 99999999999999998 789999999998766655543 1111000 0 111112 12233344
Q ss_pred cCCcccCHHHHHHcCCeeEEccCC
Q 022570 254 RRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 254 ~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
=....++|+||+++||||+|+..+
T Consensus 180 ltg~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 180 YTGRSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred HcCCCCCHHHHHHcCCCcEecCHH
Confidence 445678999999999999998643
No 42
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.23 E-value=2.8e-05 Score=71.80 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=95.3
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH---------------HHHHHHHHH
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE---------------TEAFAIYDV 164 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V---------------~aglaIyd~ 164 (295)
|.|+.| ++.++...+.+.|..++.++..+- |.|.+.|.. -.|-.+..+ .....++..
T Consensus 16 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~--vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (260)
T PRK07511 16 LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRA--VVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRA 93 (260)
T ss_pred EEECCcccccCCCHHHHHHHHHHHHHhccCCCeEE--EEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 556665 667778888888887765444343 344455522 122222111 111345667
Q ss_pred HhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022570 165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFG 243 (295)
Q Consensus 165 m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG 243 (295)
|...+.||...+-|.|.+.|..|++++ +.|++.++++|.+.....|.. +-..- .. +.+..
T Consensus 94 l~~~~kpvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~--------~~--------l~~~v- 154 (260)
T PRK07511 94 IRAFPKPVIAAVEGAAAGAGFSLALAC--DLLVAARDAKFVMAYVKVGLTPDGGGS--------WF--------LARAL- 154 (260)
T ss_pred HHcCCCCEEEEECCeeehHHHHHHHhC--CEEEeeCCCEEeccccccCcCCCchHH--------HH--------HHHHh-
Confidence 778889999999999999999999998 789999999887655444432 11100 00 11111
Q ss_pred CCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 244 KTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 244 ~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
......+++-....++|+||+++||||+|+..+
T Consensus 155 -g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (260)
T PRK07511 155 -PRQLATELLLEGKPISAERLHALGVVNRLAEPG 187 (260)
T ss_pred -CHHHHHHHHHhCCCCCHHHHHHcCCccEeeCch
Confidence 233344555455778999999999999999754
No 43
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.22 E-value=1.5e-05 Score=79.06 Aligned_cols=141 Identities=17% Similarity=0.194 Sum_probs=92.6
Q ss_pred CcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcH--H--HHHHHHHH---HhhcCCCEEEE
Q 022570 103 NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE--T--EAFAIYDV---MGYVKPPIFTL 175 (295)
Q Consensus 103 eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V--~--aglaIyd~---m~~ik~~V~Tv 175 (295)
+++-...|.++++.+.....-+...+. -.-||.-+|||||.- .|.- . .+.+|... |...+.|+.++
T Consensus 193 e~~~rnfG~~~peGyRKAlR~mklAek--f~lPIVtLVDTpGA~-----pG~~AEe~Gqa~aIAr~l~ams~l~VPiISV 265 (431)
T PLN03230 193 ENIYRNFAMPQPNGYRKALRFMRHAEK--FGFPILTFVDTPGAY-----AGIKAEELGQGEAIAFNLREMFGLRVPIIAT 265 (431)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcC-----CCHHHHHHhHHHHHHHHHHHHhcCCCCEEEE
Confidence 333333477788887777775554443 368999999999932 1211 1 12345443 45567899999
Q ss_pred EeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 022570 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR 255 (295)
Q Consensus 176 ~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~r 255 (295)
++|.+.|.|++.+++| +..+|+|++.+.+-.|.+... +.++.-.+ .++..+
T Consensus 266 ViGeGgSGGAlalg~a--D~VlMle~A~ysVisPEgaAs-------ILwkd~~~----------------A~eAAe---- 316 (431)
T PLN03230 266 VIGEGGSGGALAIGCG--NRMLMMENAVYYVASPEACAA-------ILWKSAAA----------------APKAAE---- 316 (431)
T ss_pred EeCCCCcHHHHHhhcC--CEEEEecCCEEEecCHHHHHH-------HHhccccc----------------hHHHHH----
Confidence 9999999999998888 578999999988877764221 11110000 011111
Q ss_pred CcccCHHHHHHcCCeeEEccCCCC
Q 022570 256 PKYFSPSEAVEYGIIDKVLYTEKS 279 (295)
Q Consensus 256 d~~msA~EAleyGLID~Ii~~~~~ 279 (295)
..-+||+++++.|+||+|+.....
T Consensus 317 alkitA~dL~~~GiID~II~Ep~g 340 (431)
T PLN03230 317 ALRITAAELVKLGVVDEIVPEPLG 340 (431)
T ss_pred HcCCCHHHHHhCCCCeEeccCCCC
Confidence 236799999999999999987643
No 44
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.21 E-value=1.9e-05 Score=76.12 Aligned_cols=148 Identities=22% Similarity=0.222 Sum_probs=99.1
Q ss_pred ccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCC--CCCCCcHHHHHHHHHHHhhcCCCEEEEEec
Q 022570 101 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 101 l~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~--~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G 178 (295)
.++++-..+|.++++.+.+...-+...+. -.-||.-.+||||.--+ -|.-|...++-.....|...+.|+.++++|
T Consensus 121 ~~e~~~~~~G~~~peg~rKa~R~m~lA~~--f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiG 198 (319)
T PRK05724 121 TKEKIRRNFGMPRPEGYRKALRLMKMAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIG 198 (319)
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 46777778898999888887775554443 36899999999993210 011122222233344555777899999999
Q ss_pred cchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcc
Q 022570 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKY 258 (295)
Q Consensus 179 ~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~ 258 (295)
.+.|.|++.++.+ +..+|+|++.+.+=.|.+... +.++ + . ...++..+ ...
T Consensus 199 eg~sGGAla~~~a--D~v~m~~~A~~svisPEg~a~-------Il~~------~---------~-~~a~~aae----~~~ 249 (319)
T PRK05724 199 EGGSGGALAIGVG--DRVLMLEYSTYSVISPEGCAS-------ILWK------D---------A-SKAPEAAE----AMK 249 (319)
T ss_pred CccHHHHHHHhcc--CeeeeecCceEeecCHHHHHH-------HHhc------C---------c-hhHHHHHH----HcC
Confidence 9999999888876 678999999988777764321 1111 0 0 01122222 344
Q ss_pred cCHHHHHHcCCeeEEccCCCC
Q 022570 259 FSPSEAVEYGIIDKVLYTEKS 279 (295)
Q Consensus 259 msA~EAleyGLID~Ii~~~~~ 279 (295)
+||+++++.|+||+|+..+..
T Consensus 250 ita~~l~~~g~iD~II~Ep~g 270 (319)
T PRK05724 250 ITAQDLKELGIIDEIIPEPLG 270 (319)
T ss_pred CCHHHHHHCCCceEeccCCCC
Confidence 799999999999999987643
No 45
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.19 E-value=3e-05 Score=71.74 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=90.2
Q ss_pred EEEcce----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcH-----------HHHHHHHHHHhhc
Q 022570 106 VYLGMS----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYE-----------TEAFAIYDVMGYV 168 (295)
Q Consensus 106 IfL~g~----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V-----------~aglaIyd~m~~i 168 (295)
|.|+.| ++.++...+...+..++.++..+- +.+.+.| .. -.|-.+... .....++..|..+
T Consensus 16 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~--vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (261)
T PRK03580 16 ITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRV--AIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDL 93 (261)
T ss_pred EEECCccccCCCHHHHHHHHHHHHHHHhCCCcEE--EEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhC
Confidence 555555 556677778877777765433333 3334444 11 122222110 0123356677788
Q ss_pred CCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 022570 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPE 247 (295)
Q Consensus 169 k~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e 247 (295)
+.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+-....|.. +-.. . ..+-+ .. ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G~~p~~g~-~-------~~l~~--------~v--g~~ 153 (261)
T PRK03580 94 DKPVIAAVNGYAFGGGFELALAA--DFIVCADNASFALPEAKLGIVPDSGG-V-------LRLPK--------RL--PPA 153 (261)
T ss_pred CCCEEEEECCeeehHHHHHHHHC--CEEEecCCCEEeCcccccCcCCCccH-H-------HHHHH--------Hh--CHH
Confidence 89999999999999999999998 689999999885533332321 1100 0 00111 11 223
Q ss_pred HHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 248 QIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 248 ~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
...+++-....++|+||+++||||+|+..+
T Consensus 154 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (261)
T PRK03580 154 IANEMVMTGRRMDAEEALRWGIVNRVVPQA 183 (261)
T ss_pred HHHHHHHhCCccCHHHHHHcCCCcEecCHh
Confidence 334444445678999999999999998754
No 46
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.19 E-value=1.5e-05 Score=72.58 Aligned_cols=146 Identities=18% Similarity=0.147 Sum_probs=91.8
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH------------HHHHHHHHHHhhcCCCEEEEEec
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V------------~aglaIyd~m~~ik~~V~Tv~~G 178 (295)
++.++.+.+...|..++.++..+ .+.|.+.|.. ..|-.+..+ .....++..|..++.|+.+.+-|
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 66778889999888888765555 4555554411 122222111 33456777888889999999999
Q ss_pred cchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcc
Q 022570 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKY 258 (295)
Q Consensus 179 ~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~ 258 (295)
.|.+.|+.+++++ +.|++.+++.|.+.....|..-..--.. . +.+..| .....+++=....
T Consensus 100 ~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~G~~p~~g~~~-------~--------l~r~~g--~~~a~~l~l~g~~ 160 (245)
T PF00378_consen 100 HAVGGGFELALAC--DFRIAAEDAKFGFPEVRLGIFPGAGGTF-------R--------LPRLIG--PSRARELLLTGEP 160 (245)
T ss_dssp EEETHHHHHHHHS--SEEEEETTTEEETGGGGGTSSSTSTHHH-------H--------HHHHHH--HHHHHHHHHHTCE
T ss_pred ccccccccccccc--ceEEeecccceeeeecccCccccccccc-------c--------cceeee--ccccccccccccc
Confidence 9999999999998 7899999999554333333211111110 0 111111 1111222222456
Q ss_pred cCHHHHHHcCCeeEEccCCC
Q 022570 259 FSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 259 msA~EAleyGLID~Ii~~~~ 278 (295)
++|+||+++||||+|+..+.
T Consensus 161 ~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 161 ISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp EEHHHHHHTTSSSEEESGGG
T ss_pred chhHHHHhhcceeEEcCchh
Confidence 79999999999999998755
No 47
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.12 E-value=4.5e-05 Score=70.76 Aligned_cols=149 Identities=12% Similarity=0.185 Sum_probs=90.0
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC--CC-CCCCCCCcH-----------HHHHHHHHHHh
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG--TT-KGGEKLGYE-----------TEAFAIYDVMG 166 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG--~~-~~~~~~G~V-----------~aglaIyd~m~ 166 (295)
|.|+-| ++.++...+...+..++.++ .+- |.|.+.| .. -.|-.+..+ .....+++.|.
T Consensus 17 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~--vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~ 93 (261)
T PRK11423 17 ITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRV--VILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQ 93 (261)
T ss_pred EEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceE--EEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 455554 56677788888877776433 333 3344432 11 122222111 11124566778
Q ss_pred hcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022570 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKT 245 (295)
Q Consensus 167 ~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s 245 (295)
..+.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. +-.. .. .+.+..|
T Consensus 94 ~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~~~g~-~~---------------~l~~~vg-- 153 (261)
T PRK11423 94 KFPKPVIAMVEGSVWGGAFELIMSC--DLIIAASTSTFAMTPANLGVPYNLSG-IL---------------NFTNDAG-- 153 (261)
T ss_pred hCCCCEEEEEecEEechHHHHHHhC--CEEEecCCCEecCchhhcCCCCCccH-HH---------------HHHHHhH--
Confidence 8889999999999999999899988 689999999876544433321 1100 00 1111112
Q ss_pred HHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 246 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 246 ~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
.....+++=....++|+||+++||||+|+..+
T Consensus 154 ~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 185 (261)
T PRK11423 154 FHIVKEMFFTASPITAQRALAVGILNHVVEVE 185 (261)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCcCcccCHH
Confidence 23334444345678999999999999998643
No 48
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.12 E-value=5.1e-05 Score=73.18 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=96.7
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHH----HHHHHHHH---HhhcCCCEEE
Q 022570 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET----EAFAIYDV---MGYVKPPIFT 174 (295)
Q Consensus 102 ~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~----aglaIyd~---m~~ik~~V~T 174 (295)
++++-..+|..+++...+...-+...+. -.-||.-.|+|||.- +|... .+.+|... |...+.|+.+
T Consensus 125 ~e~~~~~~G~~~p~g~rKa~Rlm~lA~~--f~lPIItlvDTpGA~-----~G~~AE~~G~~~aiar~l~~~a~~~VP~Is 197 (322)
T CHL00198 125 KENVLRNFGMPSPGGYRKALRLMKHANK--FGLPILTFIDTPGAW-----AGVKAEKLGQGEAIAVNLREMFSFEVPIIC 197 (322)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcC-----cCHHHHHHhHHHHHHHHHHHHHcCCCCEEE
Confidence 5666556677888888887775544433 368999999999921 12211 13355544 4566789999
Q ss_pred EEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 175 v~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
+++|.+.|.|++.++.+ +..+|+|++.+.+-.|.+... +.++ +.++..+..+
T Consensus 198 VViGeggsGGAlal~~a--D~V~m~e~a~~sVisPEg~a~-------Il~~-------------------d~~~a~~aA~ 249 (322)
T CHL00198 198 TIIGEGGSGGALGIGIG--DSIMMLEYAVYTVATPEACAA-------ILWK-------------------DSKKSLDAAE 249 (322)
T ss_pred EEeCcccHHHHHhhhcC--CeEEEeCCeEEEecCHHHHHH-------HHhc-------------------chhhHHHHHH
Confidence 99999999999877776 789999999999888875321 0010 1111112222
Q ss_pred CCcccCHHHHHHcCCeeEEccCCCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTEKS 279 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~~~ 279 (295)
-.-+||++-++.|+||+|+..+..
T Consensus 250 -~~~ita~dL~~~giiD~ii~Ep~g 273 (322)
T CHL00198 250 -ALKITSEDLKVLGIIDEIIPEPIG 273 (322)
T ss_pred -HcCCCHHHHHhCCCCeEeccCCCC
Confidence 245799999999999999987643
No 49
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.10 E-value=8.1e-05 Score=69.15 Aligned_cols=144 Identities=11% Similarity=0.067 Sum_probs=90.0
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH----------HHHHHHHHHHhhcCCCEEEEEeccc
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE----------TEAFAIYDVMGYVKPPIFTLCVGNA 180 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V----------~aglaIyd~m~~ik~~V~Tv~~G~A 180 (295)
++.++.+.+...|..++.++..+-| .|.+.|.. -.|-.+..+ .....+++.|..++.||...+-|.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~v--Vltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a 105 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVDVV--VLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAA 105 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEE--EEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 6777888888888877755444433 33444421 122222111 1123466778888999999999999
Q ss_pred hhHHHHHHhcccCCCEEeccCceeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCccc
Q 022570 181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYF 259 (295)
Q Consensus 181 AS~galIlaaG~kgkR~alPnS~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~m 259 (295)
.+.|.-|.+++ +.|++.++++|.+-....|. -+-.. ... +.+.-| .....+++-....+
T Consensus 106 ~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~--------l~r~vG--~~~a~~l~ltg~~~ 165 (258)
T PRK06190 106 VTGGLELALAC--DILIASERARFADTHARVGILPGWGL--------SVR--------LPQKVG--IGRARRMSLTGDFL 165 (258)
T ss_pred ecHHHHHHHhC--CEEEEeCCCEEECcccccCcCCCccH--------HHH--------HHHHhC--HHHHHHHHHhCCcc
Confidence 99999999988 68999999988653333222 11100 001 111222 33334444455678
Q ss_pred CHHHHHHcCCeeEEccCC
Q 022570 260 SPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 260 sA~EAleyGLID~Ii~~~ 277 (295)
+|+||+++||||+|...+
T Consensus 166 ~a~eA~~~GLv~~vv~~~ 183 (258)
T PRK06190 166 DAADALRAGLVTEVVPHD 183 (258)
T ss_pred CHHHHHHcCCCeEecCHh
Confidence 999999999999998643
No 50
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.10 E-value=6.6e-05 Score=69.46 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=91.6
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcH------------HHHHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V------------~aglaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++...+.+.+..++.++..+ .+.|.+.| .. -.|-.++.+ .....+++.|...+.||.+.+-
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 108 (256)
T PRK06143 31 LGTPVILALTQALRWLAADPDVR--VLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIP 108 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcE--EEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 66778888888888877544333 34444544 11 122222211 1113356777788899999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCc
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPK 257 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~ 257 (295)
|.|.+.|.-|.+++ +.|++.++++|.+-....|.-+-. . . ..+.+..| .....+++-...
T Consensus 109 G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G~p~~~---~-~------------~~l~~~iG--~~~a~~l~l~g~ 168 (256)
T PRK06143 109 GWCLGGGLELAAAC--DLRIAAHDAQFGMPEVRVGIPSVI---H-A------------ALLPRLIG--WARTRWLLLTGE 168 (256)
T ss_pred CEEeehhHHHHHhC--CEEEecCCCEEeCCccccCCCCcc---H-H------------HHHHHhcC--HHHHHHHHHcCC
Confidence 99999999999998 789999999886544333331100 0 0 01222222 233444554567
Q ss_pred ccCHHHHHHcCCeeEEccCC
Q 022570 258 YFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 258 ~msA~EAleyGLID~Ii~~~ 277 (295)
.++|+||+++||||+|+..+
T Consensus 169 ~~~a~eA~~~Glv~~vv~~~ 188 (256)
T PRK06143 169 TIDAAQALAWGLVDRVVPLA 188 (256)
T ss_pred cCCHHHHHHCCCcCeecCHH
Confidence 78999999999999999753
No 51
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.09 E-value=6e-05 Score=69.81 Aligned_cols=144 Identities=12% Similarity=0.055 Sum_probs=89.1
Q ss_pred eCcchHHHHHHHHHhhhhcCC-CCCeEEEEcCCCCC-CCCCCCCcH-----------HH-------HHHHHHHHhhcCCC
Q 022570 112 FVPSVTELILAEFLYLQYEDV-EKPIYLYINSTGTT-KGGEKLGYE-----------TE-------AFAIYDVMGYVKPP 171 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~-~k~I~LyINSPG~~-~~~~~~G~V-----------~a-------glaIyd~m~~ik~~ 171 (295)
++.++...+...+..++.+++ .+- |.|.+.|.. -.|-.+..+ .. ...++..|...+.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~~v~v--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 105 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGKAEVRC--LVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP 105 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEE--EEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 566778888888887764432 233 333455521 122222111 00 12356678888999
Q ss_pred EEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-c-chHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 022570 172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 249 (295)
Q Consensus 172 V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G-~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I 249 (295)
|.+.+-|.|.+.|.-|.+++ +.|++.++++|.+..+..|.. + -..- .+.+ ..| ....
T Consensus 106 vIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~~e~~lG~~p~~g~~~---------~l~~--------~vg--~~~a 164 (266)
T PRK05981 106 IVTAVNGPAAGVGMSFALMG--DLILCARSAYFLQAFRRIGLVPDGGSTW---------LLPR--------LVG--KARA 164 (266)
T ss_pred EEEEECCEeehHHHHHHHhC--CEEEecCCCEEechHhhcCCCCCccHHH---------HHHH--------HhH--HHHH
Confidence 99999999999999999998 689999999987666654431 1 1110 0111 111 1222
Q ss_pred HHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 250 EADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 250 ~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
.+++=....|+|+||+++||||+|+..+.
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 193 (266)
T PRK05981 165 MELSLLGEKLPAETALQWGLVNRVVDDAE 193 (266)
T ss_pred HHHHHhCCCcCHHHHHHcCCceEeeCHhH
Confidence 33333446689999999999999997543
No 52
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.09 E-value=5.8e-05 Score=70.12 Aligned_cols=150 Identities=11% Similarity=0.141 Sum_probs=94.6
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH----------------------H
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET----------------------E 157 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~----------------------a 157 (295)
|.|+-| ++.++...+.+.|..++.++..+- |.|.+.|.. -.|..+..+. .
T Consensus 19 itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~--vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (272)
T PRK06210 19 ITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRV--IVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPD 96 (272)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeE--EEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhh
Confidence 556655 677788888888888775433333 333455522 1222222110 0
Q ss_pred HHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHH
Q 022570 158 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVK 236 (295)
Q Consensus 158 glaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~ 236 (295)
...+++.|..++.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+..+..|.. +-..-. .
T Consensus 97 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~------- 159 (272)
T PRK06210 97 YQTRYHFLTALRKPVIAAINGACAGIGLTHALMC--DVRFAADGAKFTTAFARRGLIAEHGISW--------I------- 159 (272)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEeCCCEEechHHhcCCCCCCchhh--------h-------
Confidence 1223567778899999999999999999999998 789999999998766654431 111000 0
Q ss_pred HHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 237 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 237 iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
+.+. ....+..+++=....++|+||+++||||+|...+
T Consensus 160 -l~~~--ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 197 (272)
T PRK06210 160 -LPRL--VGHANALDLLLSARTFYAEEALRLGLVNRVVPPD 197 (272)
T ss_pred -hHhh--hCHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 0011 1233444544445667999999999999998653
No 53
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.08 E-value=7.7e-05 Score=68.83 Aligned_cols=144 Identities=12% Similarity=0.097 Sum_probs=91.2
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH----------HHHHHHHHHhhcCCCEEEEEeccc
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET----------EAFAIYDVMGYVKPPIFTLCVGNA 180 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~----------aglaIyd~m~~ik~~V~Tv~~G~A 180 (295)
++.++.+.+.+.+..++.++..+- +.|.+.|.. -.|-.+..+. ....+++.|..++.||...+-|.|
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 103 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIGV--CVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYA 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEE--EEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 566777888888777775443333 333455522 1222221110 113466778888999999999999
Q ss_pred hhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCccc
Q 022570 181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYF 259 (295)
Q Consensus 181 AS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~m 259 (295)
.+.|.-|.+++ +.|++.++++|.+.....|.. +-.. . ..+.+..| ...-.+++-....|
T Consensus 104 ~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~-~---------------~~l~~~ig--~~~a~~l~l~g~~~ 163 (255)
T PRK09674 104 LGAGCELALLC--DIVIAGENARFGLPEITLGIMPGAGG-T---------------QRLIRSVG--KSLASQMVLTGESI 163 (255)
T ss_pred ehHHHHHHHhC--CEEEecCCCEEeCchhhcCCCCCccH-H---------------HHHHHHhC--HHHHHHHHHcCCcc
Confidence 99999999998 789999999987655544431 1100 0 01112222 23334444455678
Q ss_pred CHHHHHHcCCeeEEccCC
Q 022570 260 SPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 260 sA~EAleyGLID~Ii~~~ 277 (295)
+|+||+++||||+|+..+
T Consensus 164 ~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK09674 164 TAQQAQQAGLVSEVFPPE 181 (255)
T ss_pred CHHHHHHcCCCcEecChH
Confidence 999999999999998754
No 54
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.06 E-value=5.2e-05 Score=69.96 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=88.3
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcHH---------H-------HHHHHHHHhhcCCCEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYET---------E-------AFAIYDVMGYVKPPIF 173 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V~---------a-------glaIyd~m~~ik~~V~ 173 (295)
++.++.+.+...+..++.++..+-|. |.+.| .. -.|-.+.... . ...+++.|..++.||.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~v~~vV--l~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDESVRAVI--LTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEE--EEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 56677888888887777554434333 34444 11 1222221100 0 1235667778889999
Q ss_pred EEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 022570 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEAD 252 (295)
Q Consensus 174 Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~ 252 (295)
..+-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. +-.. . ..+.+..| .....++
T Consensus 105 aav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~-~---------------~~l~~~vG--~~~a~~l 164 (260)
T PRK05980 105 AAVNGLAFGGGCEITEAV--HLAIASERALFAKPEIRLGMPPTFGG-T---------------QRLPRLAG--RKRALEL 164 (260)
T ss_pred EEEcCEEEhhhhHHhHhC--CEEEecCCCEecCcccccCCCCCchH-h---------------hHHHhhcC--HHHHHHH
Confidence 999999999999999998 789999999886644333321 1110 0 00111112 2233444
Q ss_pred hcCCcccCHHHHHHcCCeeEEccCC
Q 022570 253 IRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 253 ~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
+-....++|+||+++||||+|+..+
T Consensus 165 ~l~g~~~~a~eA~~~Glv~~vv~~~ 189 (260)
T PRK05980 165 LLTGDAFSAERALEIGLVNAVVPHE 189 (260)
T ss_pred HHcCCccCHHHHHHcCCCCcccCHH
Confidence 4445678999999999999999754
No 55
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.06 E-value=7.5e-05 Score=68.91 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=91.9
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH-------H------------HHH
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET-------E------------AFA 160 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~-------a------------gla 160 (295)
|.|+-| ++.++.+.+...+..++.++..+- |.|.+.|.. -.|-.+..+. . ...
T Consensus 16 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T PRK07509 16 VRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRA--VILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQR 93 (262)
T ss_pred EEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeE--EEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHH
Confidence 555544 567788888888888776543333 333444422 1222211110 0 012
Q ss_pred HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYA 239 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya 239 (295)
++..|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+.....|.. +-.. ... +.
T Consensus 94 ~~~~~~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~--------l~ 155 (262)
T PRK07509 94 VSLGWRRLPVPVIAALEGVCFGGGLQIALGA--DIRIAAPDTKLSIMEAKWGLVPDMAG--------TVS--------LR 155 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeecchHHHHHhC--CEEEecCCCEeecchhccCCCCCchH--------HHH--------HH
Confidence 3445678889999999999999999999998 689999999987765544431 1100 001 11
Q ss_pred HHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEcc
Q 022570 240 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 275 (295)
Q Consensus 240 ~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~ 275 (295)
+.. ......+++-....++|+||+++||||+|++
T Consensus 156 ~~~--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 156 GLV--RKDVARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred HHh--CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 111 2233444444557789999999999999984
No 56
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.04 E-value=0.00011 Score=67.96 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=88.1
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcHH------------HHHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYET------------EAFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V~------------aglaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++...+...+..++.++..+ .+.|.+.| .. -.|-.+..+. ....+++.|..++.||...+-
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr--vvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKDVY--ALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 56677788888777777544333 34445544 11 1222221110 012356677788899999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP 256 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd 256 (295)
|.|.+.|.-|++++ +.|++.++++|.+-....|.. +-..- .. +.+..| .....+++=..
T Consensus 104 G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~--------~~--------l~~~iG--~~~a~~l~l~g 163 (258)
T PRK09076 104 GYAMGGGLECALAC--DIRIAEEQAQMALPEASVGLLPCAGGT--------QN--------LPWLVG--EGWAKRMILCG 163 (258)
T ss_pred CEEecHHHHHHHhC--CEEEecCCCEeeCcccccCCCCCccHH--------HH--------HHHHhC--HHHHHHHHHcC
Confidence 99999999999998 689999999887654443321 11100 00 111112 12223333334
Q ss_pred cccCHHHHHHcCCeeEEccCC
Q 022570 257 KYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 257 ~~msA~EAleyGLID~Ii~~~ 277 (295)
..++|+||+++||||+|+..+
T Consensus 164 ~~~~a~eA~~~Glv~~vv~~~ 184 (258)
T PRK09076 164 ERVDAATALRIGLVEEVVEKG 184 (258)
T ss_pred CcCCHHHHHHCCCCceecCch
Confidence 667999999999999999764
No 57
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.04 E-value=8.3e-05 Score=68.45 Aligned_cols=144 Identities=16% Similarity=0.091 Sum_probs=89.7
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH-----------HHHHHHHHHHhhcCCCEEEEEecc
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLCVGN 179 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V-----------~aglaIyd~m~~ik~~V~Tv~~G~ 179 (295)
++.++.+.+...+..++.++..+-|. +.+.|.. -.|-.+..+ .....++..|..++.||...+-|.
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vV--l~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 107 (251)
T PRK06023 30 ITRAMYATMAKALKAADADDAIRAHV--FLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGL 107 (251)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEE--EECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 57788888888888777554333333 3344421 122222111 111245667888899999999999
Q ss_pred chhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcc
Q 022570 180 AWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKY 258 (295)
Q Consensus 180 AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~ 258 (295)
|.+.|.-|.+++ +.|++.++++|.+.....|.. +-..-. .+.+..| .....+++-....
T Consensus 108 a~GgG~~la~ac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~----------------~l~~~~g--~~~a~~l~l~g~~ 167 (251)
T PRK06023 108 AIGIGTTIHLHC--DLTFASPRSLFRTPFVDLALVPEAGSSL----------------LAPRLMG--HQRAFALLALGEG 167 (251)
T ss_pred eecHHHHHHHhC--CEEEEeCCCEecCcccccCCCCCchHHH----------------HHHHHHh--HHHHHHHHHhCCC
Confidence 999999999998 789999999987655443331 111000 0111111 2223333334467
Q ss_pred cCHHHHHHcCCeeEEccCC
Q 022570 259 FSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 259 msA~EAleyGLID~Ii~~~ 277 (295)
++++||+++||||+|+..+
T Consensus 168 ~~a~eA~~~Glv~~vv~~~ 186 (251)
T PRK06023 168 FSAEAAQEAGLIWKIVDEE 186 (251)
T ss_pred CCHHHHHHcCCcceeeCHH
Confidence 8999999999999998653
No 58
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.03 E-value=7.5e-05 Score=68.82 Aligned_cols=142 Identities=13% Similarity=0.125 Sum_probs=89.8
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH------H-------HHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET------E-------AFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~------a-------glaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++...+...+..++.++..+ .+.|.+.|.. -.|-.+..+. . ...+++.|..++.||...+-
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 25 LPSAGWFALADAITAAGADPDTR--VVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeE--EEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 56677788888777776544333 3334555522 1222222110 0 12345667788899999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCc
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPK 257 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~ 257 (295)
|.|.+.|.-|.+++ +.|++.++++|.+-....|..|-..- +.+..| ...-.+++-...
T Consensus 103 G~a~GgG~~Lal~c--D~ria~~~a~f~~pe~~~G~~g~~~~------------------l~~~vg--~~~a~~l~ltg~ 160 (249)
T PRK07938 103 GFCLGGGIGLVGNA--DVIVASDDATFGLPEVDRGALGAATH------------------LQRLVP--QHLMRALFFTAA 160 (249)
T ss_pred CEEeehHHHHHHhC--CEEEEeCCCEeeCccceecCchhHHH------------------HHHhcC--HHHHHHHHHhCC
Confidence 99999999999998 68999999988654433333221100 111122 333444544567
Q ss_pred ccCHHHHHHcCCeeEEccCC
Q 022570 258 YFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 258 ~msA~EAleyGLID~Ii~~~ 277 (295)
.++|+||+++||||+|+..+
T Consensus 161 ~~~a~eA~~~Glv~~vv~~~ 180 (249)
T PRK07938 161 TITAAELHHFGSVEEVVPRD 180 (249)
T ss_pred cCCHHHHHHCCCccEEeCHH
Confidence 88999999999999999743
No 59
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.02 E-value=7e-05 Score=68.93 Aligned_cols=144 Identities=12% Similarity=0.053 Sum_probs=89.8
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH---------HHHHHHHHHhhcCCCEEEEEeccch
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET---------EAFAIYDVMGYVKPPIFTLCVGNAW 181 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~---------aglaIyd~m~~ik~~V~Tv~~G~AA 181 (295)
++.++.+.+.+.+..++.++..+-|. |.+.|.. -.|-.+..+. ....++..|...+.||.+.+-|.|.
T Consensus 29 l~~~~~~~L~~~l~~~~~d~~vr~vv--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 106 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQDPRYKVVI--LTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAI 106 (249)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEE--EECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCcee
Confidence 55667777877777776544334333 3455522 1222211110 0135677788889999999999999
Q ss_pred hHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccC
Q 022570 182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFS 260 (295)
Q Consensus 182 S~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~ms 260 (295)
+.|..|.+++ +.|++.++++|.+.....|.. +-.. ... +.+.. ......+++-...-|+
T Consensus 107 GgG~~lal~c--D~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~--------l~~~~--g~~~a~~llltg~~~~ 166 (249)
T PRK07110 107 GGGLVLGLYA--DIVVLSRESVYTANFMKYGFTPGMGA--------TAI--------LPEKL--GLALGQEMLLTARYYR 166 (249)
T ss_pred chHHHHHHhC--CEEEEeCCCEecCchhccCCCCCchH--------HHH--------HHHHh--CHHHHHHHHHcCCccC
Confidence 9999999998 789999999876544333321 1110 001 11112 2344455555567789
Q ss_pred HHHHHHcCCeeEEccCC
Q 022570 261 PSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 261 A~EAleyGLID~Ii~~~ 277 (295)
++||+++||||+|+..+
T Consensus 167 a~eA~~~Glv~~vv~~~ 183 (249)
T PRK07110 167 GAELKKRGVPFPVLPRA 183 (249)
T ss_pred HHHHHHcCCCeEEeChH
Confidence 99999999999999754
No 60
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.02 E-value=0.00011 Score=67.72 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=88.4
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH-------------HHHHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE-------------TEAFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V-------------~aglaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++.+.+...+..++.++..+- +.|.+.|.. -.|-.+... .....++..|..++.||...+-
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVRV--VVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 566777788777777765443333 334555521 122222110 1123466778888999999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP 256 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd 256 (295)
|.|.+.|.-|++++ +.|++.++++|-+-....|.. |-..- .. +.+..| ...-.+++-..
T Consensus 103 G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~--------~~--------l~~~vG--~~~a~~l~l~g 162 (257)
T PRK07658 103 GAALGGGLELAMSC--HIRFATESAKLGLPELNLGLIPGFAGT--------QR--------LPRYVG--KAKALEMMLTS 162 (257)
T ss_pred CeeeeHHHHHHHhC--CEEEecCCCcccCcccccCCCCCCcHH--------HH--------HHHHhC--HHHHHHHHHcC
Confidence 99999999999988 689999999876544333321 11100 01 111112 22333444445
Q ss_pred cccCHHHHHHcCCeeEEccCC
Q 022570 257 KYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 257 ~~msA~EAleyGLID~Ii~~~ 277 (295)
..++++||+++||||+|+..+
T Consensus 163 ~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK07658 163 EPITGAEALKWGLVNGVFPEE 183 (257)
T ss_pred CCcCHHHHHHcCCcCeecChh
Confidence 678999999999999998654
No 61
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.01 E-value=0.00016 Score=66.89 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=86.7
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH------------HHHHHHHHHHhhcCCCEEEEEec
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V------------~aglaIyd~m~~ik~~V~Tv~~G 178 (295)
++.++...+...+..++ +..+- +.|.+.|.. ..|-.+... .....+++.|..++.||.+.+-|
T Consensus 26 l~~~~~~~l~~al~~~~--~~vr~--vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 101 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--EGVRA--VVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHG 101 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCCeE--EEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 56667777777777665 33333 333455522 122222111 01223566777889999999999
Q ss_pred cchhHHHHHHhcccCCCEEeccCceeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCc
Q 022570 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPK 257 (295)
Q Consensus 179 ~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~ 257 (295)
.|.+.|.-|.+++ +.|++.++++|.+-....|. -+-..-. . +.+..| .....+++=...
T Consensus 102 ~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~--------l~~~iG--~~~a~~l~ltg~ 161 (255)
T PRK08150 102 AVVGGGLELASAA--HIRVADESTYFALPEGQRGIFVGGGGSV--------R--------VPRLIG--VARMTDMMLTGR 161 (255)
T ss_pred EEEcHHHHHHHhC--CEEEEeCCCEEeccccccCCCCCccHHH--------H--------HHHHhC--HHHHHHHHHcCC
Confidence 9999999999998 68999999988654433332 1110000 0 111112 222333333456
Q ss_pred ccCHHHHHHcCCeeEEccCCC
Q 022570 258 YFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 258 ~msA~EAleyGLID~Ii~~~~ 278 (295)
.|+|+||+++||||+|+..+.
T Consensus 162 ~~~a~eA~~~Glv~~vv~~~~ 182 (255)
T PRK08150 162 VYDAQEGERLGLAQYLVPAGE 182 (255)
T ss_pred cCCHHHHHHcCCccEeeCchH
Confidence 789999999999999998643
No 62
>PLN02888 enoyl-CoA hydratase
Probab=98.01 E-value=0.00013 Score=67.85 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=88.4
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH---------HHHHHHHHHhhcCCCEEEEEeccch
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET---------EAFAIYDVMGYVKPPIFTLCVGNAW 181 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~---------aglaIyd~m~~ik~~V~Tv~~G~AA 181 (295)
++.++...+...+..++.++..+- +.|.+.|.. -.|-.+..+. ....++..|..++.||.+.+-|.|.
T Consensus 34 l~~~~~~~l~~al~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 111 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDDSVKV--IILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAI 111 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceE--EEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 566778888888887775544443 444565622 1222221110 1123455677888999999999999
Q ss_pred hHHHHHHhcccCCCEEeccCceeEEeccccccc---cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcc
Q 022570 182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKY 258 (295)
Q Consensus 182 S~galIlaaG~kgkR~alPnS~iMIHqp~~g~~---G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~ 258 (295)
+.|..|++++ +.|++.++++|.+-....|.. |-..- +.+..| .....+++=....
T Consensus 112 GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~vG--~~~a~~l~ltg~~ 169 (265)
T PLN02888 112 TAGFEIALAC--DILVASRGAKFIDTHAKFGIFPSWGLSQK------------------LSRIIG--ANRAREVSLTAMP 169 (265)
T ss_pred chHHHHHHhC--CEEEecCCCEecCccccccCCCCccHhhH------------------HHHHhC--HHHHHHHHHhCCc
Confidence 9999999998 789999999886533333321 11111 111112 2223333333457
Q ss_pred cCHHHHHHcCCeeEEccCC
Q 022570 259 FSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 259 msA~EAleyGLID~Ii~~~ 277 (295)
++|+||+++||||+|+..+
T Consensus 170 ~~a~eA~~~Glv~~vv~~~ 188 (265)
T PLN02888 170 LTAETAERWGLVNHVVEES 188 (265)
T ss_pred cCHHHHHHcCCccEeeChH
Confidence 7999999999999999754
No 63
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.00 E-value=0.0001 Score=69.66 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=67.4
Q ss_pred HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYA 239 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya 239 (295)
+++.|..++.||...+-|.|.+.|.-|++++ +.|++.++++|.+.....|.. +-..-. . +.
T Consensus 105 ~~~~l~~~pkPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~--------~--------l~ 166 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAM--DIRLASTAARFGFVFGRRGIVPEAASSW--------F--------LP 166 (296)
T ss_pred HHHHHHhCCCCEEEEECCeeehHhHHHHHhC--CEEEeeCCCEEecchhhcCcCCCcchhh--------h--------HH
Confidence 5667788889999999999999999999998 789999999987765544321 110000 0 01
Q ss_pred HHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 240 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 240 ~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
+..| .....+++-....++|+||+++||||+|+..+
T Consensus 167 r~vG--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (296)
T PRK08260 167 RLVG--LQTALEWVYSGRVFDAQEALDGGLVRSVHPPD 202 (296)
T ss_pred HhhC--HHHHHHHHHcCCccCHHHHHHCCCceeecCHH
Confidence 1111 23334444445668999999999999998653
No 64
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=97.98 E-value=0.00018 Score=66.45 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=92.9
Q ss_pred EEEcce----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH--H---H----HHHHHHHHhhcCCC
Q 022570 106 VYLGMS----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE--T---E----AFAIYDVMGYVKPP 171 (295)
Q Consensus 106 IfL~g~----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V--~---a----glaIyd~m~~ik~~ 171 (295)
|.|+.| ++.++...+.+.+..++.++..+- +.|-+.|.. -.|-.++.+ . . ...++..|..++.|
T Consensus 14 itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~--vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP 91 (251)
T TIGR03189 14 LRLARPKANIVDAAMIAALSAALGEHLEDSALRA--VLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVP 91 (251)
T ss_pred EEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceE--EEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCC
Confidence 456655 677788888888888775544443 334455522 122222211 0 0 12345567788899
Q ss_pred EEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 022570 172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251 (295)
Q Consensus 172 V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~ 251 (295)
|...+-|.|.+.|.-|.+++ +.|++.++++|.+-....|..... ... .+.+..| .....+
T Consensus 92 vIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~Gl~p~~---~~~-------------~l~~~vg--~~~a~~ 151 (251)
T TIGR03189 92 ILVAVRGQCLGGGLEVAAAG--NLMFAAPDAKLGQPEIVLGVFAPA---ASC-------------LLPERMG--RVAAED 151 (251)
T ss_pred EEEEecCeeeeHHHHHHHhC--CEEEEcCCCEEeCchhhcCCCCCc---hHH-------------HHHHHhC--HHHHHH
Confidence 99999999999999999998 689999999876644333321110 000 1122222 333444
Q ss_pred HhcCCcccCHHHHHHcCCeeEEccC
Q 022570 252 DIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 252 ~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
++=...-++|+||+++||||+|.+.
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCc
Confidence 5444566899999999999999853
No 65
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=97.98 E-value=0.00014 Score=67.96 Aligned_cols=144 Identities=14% Similarity=0.104 Sum_probs=88.7
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH-----------------------HHHHHHHHHhh
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET-----------------------EAFAIYDVMGY 167 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~-----------------------aglaIyd~m~~ 167 (295)
++.++...+.+.|..++.++..+ .+.|.+.|.. -.|-.+..+. ....+++.|..
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr--vvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (275)
T PLN02664 32 LSLDFFTEFPKALSSLDQNPNVS--VIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQ 109 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcE--EEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888888777554434 3334555522 1222221110 01235567788
Q ss_pred cCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 022570 168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPE 247 (295)
Q Consensus 168 ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e 247 (295)
++.||...+-|.|.+.|..|.+++ +.|++.++++|.+-....|..- +... ...+ .+.. ...
T Consensus 110 ~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~Gl~p---~~g~----~~~l--------~~~v--G~~ 170 (275)
T PLN02664 110 CRKPVIAAIHGACIGGGVDIVTAC--DIRYCSEDAFFSVKEVDLAITA---DLGT----LQRL--------PSIV--GYG 170 (275)
T ss_pred CCCCEEEEECCccccchHHHHHhC--CEEEecCCCEeccHHHhhCCCC---CccH----HHHH--------HHHh--CHH
Confidence 899999999999999999999998 6899999999876444333211 1100 0011 1111 122
Q ss_pred HHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 248 QIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 248 ~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
...+++=....|+|+||+++||||+|+..
T Consensus 171 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 171 NAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 23334334567799999999999999874
No 66
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=97.97 E-value=0.00019 Score=65.06 Aligned_cols=143 Identities=19% Similarity=0.297 Sum_probs=87.1
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCc-----------HHHHHHHHHHHhhcCCCEEEEEecc
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGY-----------ETEAFAIYDVMGYVKPPIFTLCVGN 179 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~-----------V~aglaIyd~m~~ik~~V~Tv~~G~ 179 (295)
++.++.+.+.+.+..++ ++ .+ .+.|.+.|.. -.|-.+.. +.....++..|..++.||.+.+-|.
T Consensus 26 l~~~~~~~l~~~l~~~~-~~-~~--vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE-DD-RA--VVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh-cc-Cc--EEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 56677788888777766 22 33 3445555522 12222110 1222345666778889999999999
Q ss_pred chhHHHHHHhcccCCCEEeccC-ceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcc
Q 022570 180 AWGEAALLLGAGAKGNRAALPS-STIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKY 258 (295)
Q Consensus 180 AAS~galIlaaG~kgkR~alPn-S~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~ 258 (295)
|.+.|..|++++ +.|++.++ ++|.+-....|.. ..... ...+. ++.| .....+++-....
T Consensus 102 a~GgG~~lal~~--D~rva~~~~a~f~~pe~~~Gl~--~~~~~-----~~~l~--------~~~g--~~~a~~lll~g~~ 162 (229)
T PRK06213 102 AIAKGAFLLLSA--DYRIGVHGPFKIGLNEVAIGMT--MPHAA-----IELAR--------DRLT--PSAFQRAVINAEM 162 (229)
T ss_pred eeHHHHHHHHhC--CeeeEecCCcEEECchhhhCCc--CChHH-----HHHHH--------HHcC--HHHHHHHHHcCcc
Confidence 999999999988 68999998 8876543333321 00000 00011 1111 1233344555678
Q ss_pred cCHHHHHHcCCeeEEccCC
Q 022570 259 FSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 259 msA~EAleyGLID~Ii~~~ 277 (295)
++|+||+++||||+|...+
T Consensus 163 ~~a~eA~~~Glv~~vv~~~ 181 (229)
T PRK06213 163 FDPEEAVAAGFLDEVVPPE 181 (229)
T ss_pred cCHHHHHHCCCceeccChH
Confidence 9999999999999998643
No 67
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=97.97 E-value=0.00014 Score=68.34 Aligned_cols=146 Identities=11% Similarity=0.062 Sum_probs=89.8
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC--CC-CCCCCCCcHH---------HH-----HHHHHHHhhcCCCEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG--TT-KGGEKLGYET---------EA-----FAIYDVMGYVKPPIFT 174 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG--~~-~~~~~~G~V~---------ag-----laIyd~m~~ik~~V~T 174 (295)
++.++...+.+.|..++.++..+-|. |.+.| .. -.|-.+..+. .. ..++..|..++.||..
T Consensus 35 l~~~~~~eL~~al~~~~~d~~vr~vV--ltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 35 MTLAMWRSLDDALTALENDPTVRGVV--FASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCHHHHHHHHHHHHHHHcCCCceEEE--EeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 56677788888888877554434333 33433 11 1222221110 00 1245667788899999
Q ss_pred EEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 175 v~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
.+-|.|.+.|..|.+++ +.|++.++++|.+-....|.. ..+.... ..+.+..| .....+++-
T Consensus 113 aV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~lGl~--~p~~~~~------------~~l~~~~G--~~~a~~lll 174 (278)
T PLN03214 113 AIRGACPAGGCAVSLCC--DYRLQTTEGTMGLNEVALGIP--VPKFWAR------------LFMGRVID--RKVAESLLL 174 (278)
T ss_pred EEcCcccchHHHHHHhC--CEEEecCCCEecCcHHHhCCC--CCChhHH------------HHHHHhcC--HHHHHHHHH
Confidence 99999999999999998 789999999887644433331 0110000 01222333 344445555
Q ss_pred CCcccCHHHHHHcCCeeEEccCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~ 277 (295)
...-|+++||+++||||+|+..+
T Consensus 175 tg~~~~a~eA~~~Glv~~vv~~~ 197 (278)
T PLN03214 175 RGRLVRPAEAKQLGLIDEVVPAA 197 (278)
T ss_pred cCCccCHHHHHHcCCCcEecChH
Confidence 56678999999999999998753
No 68
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=97.96 E-value=9.6e-05 Score=68.11 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=91.4
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH----------------HHHHHHH
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET----------------EAFAIYD 163 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~----------------aglaIyd 163 (295)
|.|+.| ++.++...+.+.|..++.++..+ .|.|.+.|.. ..|-.+..+. ....++.
T Consensus 15 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (255)
T PRK07260 15 LTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVR--FLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISF 92 (255)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHH
Confidence 455544 56677778888777776544333 2334565622 1222221110 1123556
Q ss_pred HHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc---cchHHHHHHHHHHHHHHHHHHHHHHH
Q 022570 164 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELVKLYAK 240 (295)
Q Consensus 164 ~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~---G~asDi~i~a~ei~~~~~~i~~iya~ 240 (295)
.|..++.||...+-|.|.+.|.-|++++ +.|++.++++|.+-....|.. |-.. .+.+
T Consensus 93 ~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~~ 152 (255)
T PRK07260 93 AIKQLPKPVIMCVDGAVAGAAANMAVAA--DFCIASTKTKFIQAFVGVGLAPDAGGLF------------------LLTR 152 (255)
T ss_pred HHHcCCCCEEEEecCeeehhhHHHHHhC--CEEEEeCCCEEechHhhcCCCCCCchhh------------------hhHH
Confidence 7778899999999999999999999998 689999999876522222221 1110 0111
Q ss_pred HhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 241 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 241 ~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
.-| .....+++-....++|+||+++||||+|+..+
T Consensus 153 ~vg--~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~ 187 (255)
T PRK07260 153 AIG--LNRATHLAMTGEALTAEKALEYGFVYRVAESE 187 (255)
T ss_pred hhC--HHHHHHHHHhCCccCHHHHHHcCCcceecCHh
Confidence 112 23344455456788999999999999998654
No 69
>PRK08139 enoyl-CoA hydratase; Validated
Probab=97.96 E-value=0.0002 Score=66.64 Aligned_cols=144 Identities=10% Similarity=0.140 Sum_probs=89.3
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH---------H----HHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET---------E----AFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~---------a----glaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++...+.+.+..++.++..+- |.|.+.|.. ..|-.+..+. . ...+++.|..++.||...+-
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 112 (266)
T PRK08139 35 LSEAMLAALQAALDAIAADPSVRV--VVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVH 112 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeE--EEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 566777888887777765433333 333555522 1222221110 0 12345667788899999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCc
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPK 257 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~ 257 (295)
|.|.+.|.-|++++ +.|++.++++|.+-....|......-. . +.+..| .....+++=...
T Consensus 113 G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~~~~--------~--------l~r~vG--~~~A~~l~ltg~ 172 (266)
T PRK08139 113 GIATAAGCQLVASC--DLAVAADTARFAVPGVNIGLFCSTPMV--------A--------LSRNVP--RKQAMEMLLTGE 172 (266)
T ss_pred ceeeHHHHHHHHhC--CEEEEeCCCEEeCcccCcCCCCCccHH--------H--------HHHHhC--HHHHHHHHHcCC
Confidence 99999999999998 789999999886655444432111100 0 111122 233344444456
Q ss_pred ccCHHHHHHcCCeeEEccCC
Q 022570 258 YFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 258 ~msA~EAleyGLID~Ii~~~ 277 (295)
.++|+||+++||||+|+..+
T Consensus 173 ~~~a~eA~~~GLv~~vv~~~ 192 (266)
T PRK08139 173 FIDAATAREWGLVNRVVPAD 192 (266)
T ss_pred ccCHHHHHHcCCccEeeChh
Confidence 77999999999999999754
No 70
>PLN02921 naphthoate synthase
Probab=97.96 E-value=0.00018 Score=69.35 Aligned_cols=150 Identities=13% Similarity=0.195 Sum_probs=93.7
Q ss_pred EEEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcH----------HH---HHHHHHH
Q 022570 105 IVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYE----------TE---AFAIYDV 164 (295)
Q Consensus 105 IIfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V----------~a---glaIyd~ 164 (295)
+|.|+-| ++.++...+...+..++.++..+ .|.|.+.| .. -.|-.+... .. ...++..
T Consensus 79 ~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vr--vVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (327)
T PLN02921 79 KITINRPERRNAFRPRTVKELQRAFNDARDDSSVG--VIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQ 156 (327)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCce--EEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHH
Confidence 3566655 67778888888888777544333 23334444 11 122221111 00 1224567
Q ss_pred HhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022570 165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE--GQATDVEIARKEMKNVKAELVKLYAKHF 242 (295)
Q Consensus 165 m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~--G~asDi~i~a~ei~~~~~~i~~iya~~T 242 (295)
|..++.||...+-|.|.+.|..|.+++ +.|++.++++|.+..+..|.. |-..- . +.+..
T Consensus 157 l~~~~kPvIAaVnG~a~GGG~~Lalac--D~riA~~~A~f~~pe~~~Gl~p~~gg~~---------~--------L~rli 217 (327)
T PLN02921 157 IRRLPKPVIAMVAGYAVGGGHILHMVC--DLTIAADNAVFGQTGPKVGSFDAGYGSS---------I--------MARLV 217 (327)
T ss_pred HHhCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCccHHH---------H--------HHHHh
Confidence 778889999999999999999999998 789999999988766654432 11110 0 11111
Q ss_pred CCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 243 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 243 G~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
| .....+++-....|+|+||+++||||+|+..+
T Consensus 218 G--~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~ 250 (327)
T PLN02921 218 G--QKKAREMWFLARFYTASEALKMGLVNTVVPLD 250 (327)
T ss_pred C--HHHHHHHHHcCCcCCHHHHHHCCCceEEeCHH
Confidence 2 23334444455678999999999999999754
No 71
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=97.95 E-value=0.00013 Score=67.56 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=88.0
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH-------H--------HHHHHHHHhhcCCCEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET-------E--------AFAIYDVMGYVKPPIFTL 175 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~-------a--------glaIyd~m~~ik~~V~Tv 175 (295)
++.++...+...|..++.++..+- |.|.+.|.. -.|-.+..+. . ...+++.|+.++.||...
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVRV--VVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGR 106 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEE--EEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 555677777777766664433333 344455522 1222221110 0 023567788899999999
Q ss_pred EeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 022570 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR 255 (295)
Q Consensus 176 ~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~r 255 (295)
+-|.|.+.|.-|++++ +.|++.++++|.+-....|..- +..-. . +..+ .......+++-.
T Consensus 107 v~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~~Gl~p---~~g~~--~-----------~~~~--vG~~~a~~lll~ 166 (262)
T PRK07468 107 IQGQAFGGGVGLISVC--DVAIAVSGARFGLTETRLGLIP---ATISP--Y-----------VVAR--MGEANARRVFMS 166 (262)
T ss_pred ECCEEEhHHHHHHHhC--CEEEEeCCCEEeCchhccCCCc---ccchh--h-----------HHhh--ccHHHHHHHHHh
Confidence 9999999999999998 6899999998765444333210 00000 0 0011 222334455555
Q ss_pred CcccCHHHHHHcCCeeEEccCC
Q 022570 256 PKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 256 d~~msA~EAleyGLID~Ii~~~ 277 (295)
..-++|+||+++||||+|...+
T Consensus 167 g~~~~a~eA~~~Glv~~v~~~~ 188 (262)
T PRK07468 167 ARLFDAEEAVRLGLLSRVVPAE 188 (262)
T ss_pred CCccCHHHHHHcCCcceecCHH
Confidence 6778999999999999998753
No 72
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=97.95 E-value=0.00021 Score=66.54 Aligned_cols=150 Identities=15% Similarity=0.176 Sum_probs=93.7
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcH-------HH-------HHHHHHH
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYE-------TE-------AFAIYDV 164 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V-------~a-------glaIyd~ 164 (295)
|.|+-| ++.++...+.+.+..++.++..+ .+.|.+.| .. -.|-.+..+ .. ...+++.
T Consensus 24 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (269)
T PRK06127 24 ITFNNPARHNAMSLDMWEALPQALAAAEDDDAIR--VVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAA 101 (269)
T ss_pred EEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcE--EEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 455544 56778888888888777654333 33345544 11 122222111 00 1134566
Q ss_pred HhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022570 165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFG 243 (295)
Q Consensus 165 m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG 243 (295)
|..++.||...+-|.|.+.|.-|.+++ +.|++.++++|.+.....|.. +-.. .. .+ .+..|
T Consensus 102 i~~~~kPvIaav~G~a~GgG~~Lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~-~~-------~l--------~~~vG 163 (269)
T PRK06127 102 LADYAKPTIACIRGYCIGGGMGIALAC--DIRIAAEDSRFGIPAARLGLGYGYDG-VK-------NL--------VDLVG 163 (269)
T ss_pred HHhCCCCEEEEECCEEecHHHHHHHhC--CEEEeeCCCEeeCchhhhCCCCCccH-HH-------HH--------HHHhC
Confidence 778889999999999999999999998 789999999988766554432 1110 00 01 11112
Q ss_pred CCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 244 KTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 244 ~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
.....+++-....++++||+++||||+|+..+
T Consensus 164 --~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (269)
T PRK06127 164 --PSAAKDLFYTARRFDAAEALRIGLVHRVTAAD 195 (269)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHH
Confidence 23344444445678999999999999999643
No 73
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=97.95 E-value=0.00015 Score=66.93 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=86.6
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcH----------H-HHHHHHHHHhhcCCCEEEEEec
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYE----------T-EAFAIYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V----------~-aglaIyd~m~~ik~~V~Tv~~G 178 (295)
++.++.+.+...|..++.++..+-|. |.+.| .. ..|-.+... . ....+++.|..++.||.+.+-|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr~vV--l~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 103 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIGVIV--LAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQG 103 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEE--EecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 56677778888777776544333333 34444 11 122222111 0 1123566788889999999999
Q ss_pred cchhHHHHHHhcccCCCEEeccCceeEEeccccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 022570 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE--GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP 256 (295)
Q Consensus 179 ~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~--G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd 256 (295)
.|.+.|.-|++++ +.|++.++++|.+-.+..|.. +-... .+.+..| ...-.+++-..
T Consensus 104 ~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G~~~~~~~~~-----------------~l~~~vG--~~~A~~lll~g 162 (256)
T TIGR03210 104 YAIGGGNVLVTIC--DLTIASEKAQFGQVGPKVGSVDPGYGTA-----------------LLARVVG--EKKAREIWYLC 162 (256)
T ss_pred EEehhhHHHHHhC--CEEEEeCCCEEecccccccccCCccHHH-----------------HHHHHhC--HHHHHHHHHhC
Confidence 9999999999998 689999999887644443321 11110 0111112 12222233234
Q ss_pred cccCHHHHHHcCCeeEEccCC
Q 022570 257 KYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 257 ~~msA~EAleyGLID~Ii~~~ 277 (295)
..|+|+||+++||||+|+..+
T Consensus 163 ~~~~a~eA~~~Glv~~vv~~~ 183 (256)
T TIGR03210 163 RRYTAQEALAMGLVNAVVPHD 183 (256)
T ss_pred CCcCHHHHHHcCCceeeeCHH
Confidence 568999999999999999753
No 74
>PLN02600 enoyl-CoA hydratase
Probab=97.95 E-value=0.00021 Score=65.93 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=86.2
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCC-CCC-CCCCCCCcH-----HH-------HHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINST-GTT-KGGEKLGYE-----TE-------AFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSP-G~~-~~~~~~G~V-----~a-------glaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++.+.+.+.+..++.++..+-|.| .+. |.. -.|-.+... .. ...+++.|..++.||...+-
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl--~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 96 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVML--RSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVE 96 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEE--ecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 567788888888877775543333333 333 211 122211110 01 12345567778899999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP 256 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd 256 (295)
|.|.+.|.-|.+++ +.|++.++++|.+-....|.. +-.. . .. +.+.. ......+++=..
T Consensus 97 G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~-~-------~~--------l~~~~--G~~~a~~l~ltg 156 (251)
T PLN02600 97 GAALGGGLELALSC--DLRICGEEAVFGLPETGLAIIPGAGG-T-------QR--------LPRLV--GRSRAKELIFTG 156 (251)
T ss_pred CeecchhHHHHHhC--CEEEeeCCCEEeCcccccCcCCCchH-H-------HH--------HHHHh--CHHHHHHHHHhC
Confidence 99999999999998 789999999887633332321 1110 0 01 11111 122223333344
Q ss_pred cccCHHHHHHcCCeeEEccCC
Q 022570 257 KYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 257 ~~msA~EAleyGLID~Ii~~~ 277 (295)
..++++||+++||||+|+..+
T Consensus 157 ~~~~a~eA~~~Glv~~vv~~~ 177 (251)
T PLN02600 157 RRIGAREAASMGLVNYCVPAG 177 (251)
T ss_pred CccCHHHHHHcCCCcEeeChh
Confidence 668999999999999998754
No 75
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=97.94 E-value=0.00019 Score=66.43 Aligned_cols=144 Identities=13% Similarity=0.109 Sum_probs=88.1
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH----------HHHHHHHHHHhhcCCCEEEEEeccc
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE----------TEAFAIYDVMGYVKPPIFTLCVGNA 180 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V----------~aglaIyd~m~~ik~~V~Tv~~G~A 180 (295)
++.++...+.+.+..++.++..+-|. |.+.|.. -.|-.+..+ .....+++.|..++.||...+-|.|
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vv--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 109 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIV--LTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYA 109 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEE--EECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence 56677788888777776544333333 3344422 122222111 0112356677788899999999999
Q ss_pred hhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCccc
Q 022570 181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYF 259 (295)
Q Consensus 181 AS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~m 259 (295)
.+.|.-|.+++ +.|++.++++|.+-....|.. +-.. . ..+.+..| .....+++-....|
T Consensus 110 ~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~-~---------------~~l~~~vG--~~~a~~l~l~g~~~ 169 (261)
T PRK08138 110 LGGGCELAMHA--DIIVAGESASFGQPEIKVGLMPGAGG-T---------------QRLVRAVG--KFKAMRMALTGCMV 169 (261)
T ss_pred EcHHHHHHHhC--CEEEecCCCEeeCcccccccCCCCcH-H---------------HHHHHHhC--HHHHHHHHHcCCCC
Confidence 99999999988 689999998876544433321 1100 0 00112222 22333444445678
Q ss_pred CHHHHHHcCCeeEEccCC
Q 022570 260 SPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 260 sA~EAleyGLID~Ii~~~ 277 (295)
+|+||+++||||+|+..+
T Consensus 170 ~a~eA~~~Glv~~vv~~~ 187 (261)
T PRK08138 170 PAPEALAIGLVSEVVEDE 187 (261)
T ss_pred CHHHHHHCCCCcEecCch
Confidence 999999999999998754
No 76
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=97.94 E-value=0.00014 Score=67.03 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=87.5
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH----------HH-----HHHHHHHhhcCCCEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET----------EA-----FAIYDVMGYVKPPIFTL 175 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~----------ag-----laIyd~m~~ik~~V~Tv 175 (295)
++.++...+...|..++.++ .+-|. |.+.|.. -.|-.+..+. .. ..+++.|..++.||.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~~vV--ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 99 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-ARALM--LTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA 99 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cEEEE--EECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 56678888888888887654 44444 3444521 1222221110 00 12455678889999999
Q ss_pred EeccchhHHHHHHhcccCCCEEeccCceeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 176 ~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
+-|.|.+.|.-|++++ +.|++.++++|.+-....|. -+-..-. . +.+..| ...-.+++-
T Consensus 100 v~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~lG~~p~~g~~~--------~--------l~~~vG--~~~a~~l~l 159 (256)
T TIGR02280 100 VNGVAAGAGANLALAC--DIVLAAESARFIQAFAKIGLIPDSGGTW--------S--------LPRLVG--RARAMGLAM 159 (256)
T ss_pred ECCeeehHHHHHHHhC--CEEEecCCCEEeChhhhcCCCCCccHHH--------H--------HHHHhC--HHHHHHHHH
Confidence 9999999999999998 78999999998754333332 1110000 0 111111 122233333
Q ss_pred CCcccCHHHHHHcCCeeEEccCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~ 277 (295)
....++++||+++||||+|...+
T Consensus 160 ~g~~~~a~eA~~~Glv~~vv~~~ 182 (256)
T TIGR02280 160 LGEKLDARTAASWGLIWQVVDDA 182 (256)
T ss_pred cCCCCCHHHHHHcCCcceeeChH
Confidence 45678999999999999998754
No 77
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=97.93 E-value=0.0002 Score=66.65 Aligned_cols=149 Identities=14% Similarity=0.184 Sum_probs=90.4
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH-----------------------H
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE-----------------------T 156 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V-----------------------~ 156 (295)
|.|+-| ++.++...+.+.+..++.++..+- |.|.+.|.. -.|-.+... .
T Consensus 19 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~--vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (272)
T PRK06142 19 VTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRA--VVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREIL 96 (272)
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEE--EEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHH
Confidence 445554 677788888888877765433333 333455522 122221110 0
Q ss_pred HHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHH
Q 022570 157 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELV 235 (295)
Q Consensus 157 aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~ 235 (295)
....+++.|..++.||...+-|.|.+.|.-|++++ +.|++.++++|.+.....|.. |-.. . ..
T Consensus 97 ~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~-~-------~~------ 160 (272)
T PRK06142 97 RLQAAINAVADCRKPVIAAVQGWCIGGGVDLISAC--DMRYASADAKFSVREVDLGMVADVGS-L-------QR------ 160 (272)
T ss_pred HHHHHHHHHHhCCCCEEEEecCccccchHHHHHhC--CEEEecCCCeecchhhhhCCCCCchH-H-------HH------
Confidence 11235566778889999999999999999999998 689999999876554443321 1110 0 00
Q ss_pred HHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 236 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 236 ~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
+.+..| .....+++=...-++|+||+++||||+|+..
T Consensus 161 --l~~~~G--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 161 --LPRIIG--DGHLRELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred --HHHHhC--HHHHHHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 111112 1223333333455799999999999999975
No 78
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=97.93 E-value=0.00023 Score=65.84 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=86.2
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcHH---------HHHHHHHHHhhcCCCEEEEEeccc
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYET---------EAFAIYDVMGYVKPPIFTLCVGNA 180 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V~---------aglaIyd~m~~ik~~V~Tv~~G~A 180 (295)
++.++...+...+..++.++..+-|. |.+.| .. ..|-.+.... ..+.-+..+..++.||...+-|.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vV--l~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a 105 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWVAI--VTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVA 105 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEE--EEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEE
Confidence 55667778888777777554444333 33433 11 1222221111 011112223456789999999999
Q ss_pred hhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCccc
Q 022570 181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYF 259 (295)
Q Consensus 181 AS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~m 259 (295)
.+.|.-|.+++ +.|++.++++|.+.....|.. +-.. .. .+.+..| .....+++-....+
T Consensus 106 ~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~-~~---------------~l~~~vg--~~~a~~lll~g~~~ 165 (259)
T PRK06494 106 MGGGFELALAC--DLIVAAENATFALPEPRVGLAALAGG-LH---------------RLPRQIG--LKRAMGMILTGRRV 165 (259)
T ss_pred ecHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCchH-HH---------------HHHHHcC--HHHHHHHHHcCCcC
Confidence 99999999998 689999999887655544431 1110 00 1122222 33334444455678
Q ss_pred CHHHHHHcCCeeEEccCC
Q 022570 260 SPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 260 sA~EAleyGLID~Ii~~~ 277 (295)
+|+||+++||||+|+..+
T Consensus 166 ~a~eA~~~GLv~~vv~~~ 183 (259)
T PRK06494 166 TAREGLELGFVNEVVPAG 183 (259)
T ss_pred CHHHHHHcCCCcEecCHh
Confidence 999999999999999753
No 79
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=97.93 E-value=0.00022 Score=65.92 Aligned_cols=143 Identities=14% Similarity=0.181 Sum_probs=88.2
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH---------------HHHHHHHHHHhhcCCCEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE---------------TEAFAIYDVMGYVKPPIFTL 175 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V---------------~aglaIyd~m~~ik~~V~Tv 175 (295)
++.++...+...+..++.++..+ .+.|.+.|.. ..|-.+..+ .....++..|...+.||.+.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK05995 28 FNETVIAELTAAFRALDADDSVR--AVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIAR 105 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeE--EEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEE
Confidence 56677788888887776544333 3444555521 122222111 00123455677788999999
Q ss_pred EeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 022570 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR 255 (295)
Q Consensus 176 ~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~r 255 (295)
+-|.|.+.|.-|++++ +.|++.++++|.+-....|... +.... . +.+.. ......+++-.
T Consensus 106 v~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p---~~g~~-----~--------l~~~v--g~~~a~~l~l~ 165 (262)
T PRK05995 106 VHGDAYAGGMGLVAAC--DIAVAADHAVFCLSEVRLGLIP---ATISP-----Y--------VIRAM--GERAARRYFLT 165 (262)
T ss_pred ECCEEEhhHHHHHHhC--CEEEeeCCCEEeCcccccccCc---cchHH-----H--------HHHHh--CHHHHHHHHHc
Confidence 9999999999999998 6899999998876544433311 11000 0 11112 23333444444
Q ss_pred CcccCHHHHHHcCCeeEEccC
Q 022570 256 PKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 256 d~~msA~EAleyGLID~Ii~~ 276 (295)
..-++|+||+++||||+|+..
T Consensus 166 g~~~~a~eA~~~Glv~~vv~~ 186 (262)
T PRK05995 166 AERFDAAEALRLGLVHEVVPA 186 (262)
T ss_pred CCccCHHHHHHcCCCCeecCH
Confidence 566799999999999999964
No 80
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=97.92 E-value=0.00013 Score=67.24 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=88.1
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcHH------------HHHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYET------------EAFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V~------------aglaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++...+.+.+..++.++..+ .+.|.+.| .. -.|-.+..+. ....+++.|..++.||...+-
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~--~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVY--AVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcE--EEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 56667777777777666544333 33445545 22 1222221110 113466678888899999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCc
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPK 257 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~ 257 (295)
|.|.+.|.-|.+++ +.|++.++++|.+.....|..-..--.. .+.+..| .....+++-...
T Consensus 106 G~a~GgG~~lal~c--D~~va~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~vG--~~~a~~l~l~g~ 166 (260)
T PRK05809 106 GFALGGGCELSMAC--DIRIASEKAKFGQPEVGLGITPGFGGTQ---------------RLARIVG--PGKAKELIYTGD 166 (260)
T ss_pred CeeecHHHHHHHhC--CEEEeeCCCEEeCcccccCCCCCccHHH---------------HHHHHhC--HHHHHHHHHhCC
Confidence 99999999999998 6899999999876554433311100000 0111112 123333443456
Q ss_pred ccCHHHHHHcCCeeEEccC
Q 022570 258 YFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 258 ~msA~EAleyGLID~Ii~~ 276 (295)
.++++||+++||||+|+..
T Consensus 167 ~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK05809 167 MINAEEALRIGLVNKVVEP 185 (260)
T ss_pred CCCHHHHHHcCCCCcccCh
Confidence 6799999999999999864
No 81
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=97.92 E-value=9.9e-05 Score=69.62 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=66.5
Q ss_pred HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 240 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~ 240 (295)
++..|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|..|- .-. .+. .
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalac--D~ria~e~a~f~~pe~~lGl~~~-~~~--------~l~--------~ 170 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVC--DLIVASDDAFFSDPVVRMGIPGV-EYF--------AHP--------W 170 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhC--CEEEeeCCCEecCcccccCcCcc-hHH--------HHH--------H
Confidence 4456778889999999999999999999998 68999999998754444444321 000 000 0
Q ss_pred HhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 241 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 241 ~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
.. ...+..+++-....++|+||+++||||+|+..+
T Consensus 171 ~i--G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 205 (288)
T PRK08290 171 EL--GPRKAKELLFTGDRLTADEAHRLGMVNRVVPRD 205 (288)
T ss_pred Hh--hHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 11 123334444445678999999999999999753
No 82
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=97.91 E-value=0.00014 Score=67.91 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=86.3
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH------------H-------HHHHHHHHHhhcCCC
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE------------T-------EAFAIYDVMGYVKPP 171 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V------------~-------aglaIyd~m~~ik~~ 171 (295)
++.++...+...+..++.++..+- +.|.+.|.. -.|-.+... . ....+++.|..++.|
T Consensus 34 l~~~~~~~L~~~l~~~~~d~~vrv--vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 111 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYDNSVRV--VVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQP 111 (276)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceE--EEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 566777788887777775443333 333444421 122211100 0 012345667778899
Q ss_pred EEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 022570 172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251 (295)
Q Consensus 172 V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~ 251 (295)
|...+-|.|.+.|.-|.+++ +.|++.++++|.+-....|..- .+.... ..+.+..| .....+
T Consensus 112 vIaav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p--~~~g~~------------~~l~~~vG--~~~A~~ 173 (276)
T PRK05864 112 VIAAVNGPAIGGGLCLALAA--DIRVASSSAYFRAAGINNGLTA--SELGLS------------YLLPRAIG--SSRAFE 173 (276)
T ss_pred EEEEECCEeehhHHHHHHhC--CEEEeeCCCEecCcccccCCCC--CCcchh------------eehHhhhC--HHHHHH
Confidence 99999999999999999998 6899999998865443333210 000000 00112223 233333
Q ss_pred HhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 252 DIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 252 ~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
++=....++|+||+++||||+|+..+
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHH
Confidence 33334457999999999999998654
No 83
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=97.91 E-value=0.00024 Score=65.58 Aligned_cols=144 Identities=10% Similarity=0.128 Sum_probs=88.1
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH----------HHHHHHHHHHhhcCCCEEEEEeccc
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE----------TEAFAIYDVMGYVKPPIFTLCVGNA 180 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V----------~aglaIyd~m~~ik~~V~Tv~~G~A 180 (295)
++.++...+...+..++.++..+-|.| -+.|.. -.|-.++.+ .....++..|..++.||.+.+-|.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a 105 (257)
T PRK05862 28 LNDALMDELGAALAAFDADEGIGAIVI--TGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYA 105 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEE--ECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence 466777888887777775443343333 344522 122222111 1112356677888899999999999
Q ss_pred hhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCccc
Q 022570 181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYF 259 (295)
Q Consensus 181 AS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~m 259 (295)
.+.|.-|.+++ +.|++.++++|.+-....|.. |-.. . . .+.+..| ...-.+++-....+
T Consensus 106 ~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~-~-------~--------~l~~~vG--~~~a~~l~l~g~~~ 165 (257)
T PRK05862 106 LGGGCELAMMC--DIIIAADTAKFGQPEIKLGVLPGMGG-S-------Q--------RLTRAVG--KAKAMDLCLTGRMM 165 (257)
T ss_pred eHHHHHHHHHC--CEEEEeCCCEEeCchhccCcCCCccH-H-------H--------HHHHHhC--HHHHHHHHHhCCcc
Confidence 99999999998 689999998876544333321 1100 0 0 1112222 12233444445678
Q ss_pred CHHHHHHcCCeeEEccCC
Q 022570 260 SPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 260 sA~EAleyGLID~Ii~~~ 277 (295)
+|+||+++||||+|+..+
T Consensus 166 ~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK05862 166 DAAEAERAGLVSRVVPAD 183 (257)
T ss_pred CHHHHHHcCCCCEeeCHh
Confidence 999999999999998753
No 84
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=97.89 E-value=0.00027 Score=65.18 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=90.0
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHHH------------HHH-HHHHHh
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYETE------------AFA-IYDVMG 166 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~a------------gla-Iyd~m~ 166 (295)
|.|+-| ++.++.+.+...+..++.++..+ .+.|.+.|.. -.|-.+..+.. ... ++..|.
T Consensus 12 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr--vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (255)
T PRK06563 12 IGLDRPAKRNAFDSAMLDDLALALGEYEADDELR--VAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGR 89 (255)
T ss_pred EEECCcccccCCCHHHHHHHHHHHHHHhhCCCcE--EEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHh
Confidence 455554 56677788888777776543323 2444555522 12322221110 111 223466
Q ss_pred hcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022570 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKT 245 (295)
Q Consensus 167 ~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s 245 (295)
.++.||.+.+-|.|.+.|..|++++ +.|++.++++|.+.....|.. +-.... . +.+..|
T Consensus 90 ~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~--------~--------l~~~vG-- 149 (255)
T PRK06563 90 RLSKPLVVAVQGYCLTLGIELMLAA--DIVVAADNTRFAQLEVQRGILPFGGATL--------R--------FPQAAG-- 149 (255)
T ss_pred cCCCCEEEEEcCeeecHHHHHHHhC--CEEEecCCCEEeChhhhcCCCCCccHHH--------H--------HHHHhh--
Confidence 7789999999999999999999998 789999999987655444431 111100 0 111112
Q ss_pred HHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 246 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 246 ~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
.....+++-....|+|+||+++||||+|+..+
T Consensus 150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 150 WGNAMRYLLTGDEFDAQEALRLGLVQEVVPPG 181 (255)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence 12223444445678999999999999998754
No 85
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=97.89 E-value=0.00021 Score=66.42 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=86.0
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH-------H-------HHHHHHHHhhcCCCEEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET-------E-------AFAIYDVMGYVKPPIFTLC 176 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~-------a-------glaIyd~m~~ik~~V~Tv~ 176 (295)
++.++...+.+.|..++.++..+- |.|.+.|.. -.|-.+..+. . ...++..|..++.||...+
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 113 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRV--VLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAI 113 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceE--EEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 566777888888887776544443 333455522 1222221110 0 1233455667788999999
Q ss_pred eccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 022570 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR 255 (295)
Q Consensus 177 ~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~r 255 (295)
-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. +...... +.+..| .....+++-.
T Consensus 114 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~----------------l~~~vG--~~~a~~l~lt 173 (268)
T PRK07327 114 HGPAVGAGLVAALLA--DISIAAKDARIIDGHTRLGVAAGDHAAIV----------------WPLLCG--MAKAKYYLLL 173 (268)
T ss_pred cCeeeehhhHHHHhC--CEEEecCCCEEeCcccccCCCCCcchhhH----------------HHHHhC--HHHHHHHHHc
Confidence 999999999999998 789999999886533333321 1111000 000011 1222223334
Q ss_pred CcccCHHHHHHcCCeeEEccCC
Q 022570 256 PKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 256 d~~msA~EAleyGLID~Ii~~~ 277 (295)
...|+|+||+++||||+|+..+
T Consensus 174 g~~~~a~eA~~~Glv~~vv~~~ 195 (268)
T PRK07327 174 CEPVSGEEAERIGLVSLAVDDD 195 (268)
T ss_pred CCccCHHHHHHcCCcceecCHH
Confidence 4568999999999999998653
No 86
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=97.89 E-value=0.00026 Score=65.41 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=89.0
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCC-C-CCCCCCCcHH------------HHHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-T-KGGEKLGYET------------EAFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~-~-~~~~~~G~V~------------aglaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++...+.+.+..++.++..+ .+.|.+.|. . -.|-.++.+. ....+++.|..++.||...+-
T Consensus 28 l~~~~~~~l~~al~~~~~d~~v~--~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 28 LSLALLEELQNILTQINEEANVR--VVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeE--EEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 56777888888888777544333 334455441 1 1222222110 012356677788899999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCceeEEeccccccc---cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~---G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
|.|.+.|.-|.+++ +.|++.++++|.+-....|.. |-..-+. +..| .....+++-
T Consensus 106 G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~------------------~~vG--~~~a~~l~l 163 (260)
T PRK07657 106 GIALGGGLELALAC--DFRIAAESASLGLTETTLAIIPGAGGTQRLP------------------RLIG--VGRAKELIY 163 (260)
T ss_pred CEeechHHHHHHhC--CEEEeeCCCEEcCchhccCcCCCccHHHHHH------------------HHhC--HHHHHHHHH
Confidence 99999999999998 789999999887655443331 1111111 1111 122333333
Q ss_pred CCcccCHHHHHHcCCeeEEccCCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
....++|+||+++||||+|+..+.
T Consensus 164 ~g~~~~a~eA~~~Glv~~vv~~~~ 187 (260)
T PRK07657 164 TGRRISAQEAKEIGLVEFVVPAHL 187 (260)
T ss_pred hCCCCCHHHHHHcCCCCeecCHHH
Confidence 445689999999999999987543
No 87
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=97.89 E-value=0.00029 Score=64.87 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=86.8
Q ss_pred EEEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHHH---------HHHHHHHHhhcC
Q 022570 105 IVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYETE---------AFAIYDVMGYVK 169 (295)
Q Consensus 105 IIfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~a---------glaIyd~m~~ik 169 (295)
+|.|+-| ++.++.+.+...+..++.++..+-| .|.+.|.. -.|..+..... ...++..|..++
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~v--Vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (248)
T PRK06072 12 IVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVV--IVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSD 89 (248)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEE--EEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCC
Confidence 3555544 5667788888888877754433333 34455522 12222211110 123455677788
Q ss_pred CCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 022570 170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 249 (295)
Q Consensus 170 ~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I 249 (295)
.||...+-|.|.+.|.-|.+++ +.|++.++++|.+.....|..- +..... .+.+..| . ..
T Consensus 90 kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~~~~~~Gl~p---~~g~~~------------~l~~~~g--~-~a 149 (248)
T PRK06072 90 KIYISAINGVTAGACIGIALST--DFKFASRDVKFVTAFQRLGLAS---DTGVAY------------FLLKLTG--Q-RF 149 (248)
T ss_pred CCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEecchhhcCcCC---CchHHH------------HHHHHhh--H-HH
Confidence 9999999999999999888888 7899999999876554433321 110000 0111112 1 12
Q ss_pred HHHhcCCcccCHHHHHHcCCeeEE
Q 022570 250 EADIRRPKYFSPSEAVEYGIIDKV 273 (295)
Q Consensus 250 ~~~~~rd~~msA~EAleyGLID~I 273 (295)
.+++-....++|+||+++||||++
T Consensus 150 ~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 150 YEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred HHHHHhCCccCHHHHHHCCCcccc
Confidence 222223345799999999999964
No 88
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.89 E-value=0.00018 Score=75.50 Aligned_cols=143 Identities=20% Similarity=0.215 Sum_probs=92.4
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCC--CCCCCCcHHHHHHHHHHH---hhcCCCEEEEE
Q 022570 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVM---GYVKPPIFTLC 176 (295)
Q Consensus 102 ~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~--~~~~~G~V~aglaIyd~m---~~ik~~V~Tv~ 176 (295)
++|+-..+|..+++.+.....-+...+. -.-||.-+|+|||.-- .-|..| .+-+|...+ ...+.|+.+++
T Consensus 213 ke~~~rnfG~~~peGyRKAlRlmkLAek--fgLPIVtLVDTpGA~pG~~AEe~G---q~~aIArnl~amasl~VP~ISVV 287 (762)
T PLN03229 213 KENIMRNFGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELG---QGEAIAHNLRTMFGLKVPIVSIV 287 (762)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCchhHHHh---HHHHHHHHHHHHhCCCCCEEEEE
Confidence 4455555666667666776665444433 3689999999999321 011112 234454444 45668999999
Q ss_pred eccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 022570 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP 256 (295)
Q Consensus 177 ~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd 256 (295)
+|-|+|.|++.++.+ +..+|+|++.+.+-.|.+.+. +.++ +.+...+ +..-
T Consensus 288 iGeggSGGAlA~g~a--D~VlMle~A~~sVisPEgaAs-------ILwk-------------------d~~~A~e-AAe~ 338 (762)
T PLN03229 288 IGEGGSGGALAIGCA--NKLLMLENAVFYVASPEACAA-------ILWK-------------------SAKAAPK-AAEK 338 (762)
T ss_pred eCCcchHHHHHhhcC--CEEEEecCCeEEecCHHHHHH-------HHhc-------------------CcccHHH-HHHH
Confidence 999999999988887 678999999987777764321 1111 1111111 1122
Q ss_pred cccCHHHHHHcCCeeEEccCCC
Q 022570 257 KYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 257 ~~msA~EAleyGLID~Ii~~~~ 278 (295)
.-+||++-+++|+||+|+..+.
T Consensus 339 lkiTa~dL~~lGiiD~IIpEp~ 360 (762)
T PLN03229 339 LRITAQELCRLQIADGIIPEPL 360 (762)
T ss_pred cCCCHHHHHhCCCCeeeccCCC
Confidence 4579999999999999998764
No 89
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.88 E-value=0.0002 Score=66.41 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=88.5
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCC--CCCCCCcHHHHHHHHHHHh---hcCCCEEEEEeccchhHHHH
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMG---YVKPPIFTLCVGNAWGEAAL 186 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~--~~~~~G~V~aglaIyd~m~---~ik~~V~Tv~~G~AAS~gal 186 (295)
++-+-+.+....+...-.++..-||...+|+||.-. .-|..|-.-++-.+...+. ..+.|+.++++|.+.|.|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 443445555555554322235789999999999442 2233344444443334444 44589999999999998877
Q ss_pred HHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC--CcccCHHHH
Q 022570 187 LLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR--PKYFSPSEA 264 (295)
Q Consensus 187 IlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~r--d~~msA~EA 264 (295)
-+..+. +..+++|++.+-.=.|.+.. +.+.++.+++++..+. ..-.+++.+
T Consensus 125 amg~~a-d~v~Alp~A~i~vm~~e~aa--------------------------~I~~~~~~~~~e~a~~~~~~a~~~~~~ 177 (238)
T TIGR03134 125 AHGLQA-DRIIALPGAMVHVMDLESMA--------------------------RVTKRSVEELEALAKSSPVFAPGIENF 177 (238)
T ss_pred HHccCc-CeEEEcCCcEEEecCHHHHH--------------------------HHHccCHhHHHHHHHhhhhhccCHHHH
Confidence 775433 77999999987655554321 1111233344443332 345688899
Q ss_pred HHcCCeeEEccCCCC
Q 022570 265 VEYGIIDKVLYTEKS 279 (295)
Q Consensus 265 leyGLID~Ii~~~~~ 279 (295)
.+.|+||+|++....
T Consensus 178 ~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 178 VKLGGVHALLDVADA 192 (238)
T ss_pred HhCCCccEEeCCCCc
Confidence 999999999997654
No 90
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=97.87 E-value=0.00029 Score=65.21 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=65.6
Q ss_pred HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYA 239 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya 239 (295)
+++.|..++.||...+-|.|.+.|.-|++++ +.|++.++++|.+.....|.. +-..- . .+.
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G~~p~~g~~-~---------------~l~ 156 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAESFVKLGLIPGDGGA-W---------------LLP 156 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEcccccccCcCCCcchh-h---------------hHH
Confidence 4567778889999999999999999999998 789999999887654443331 11000 0 011
Q ss_pred HHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 240 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 240 ~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
+..| .....+++=....|+|+||+++||||+|+..+
T Consensus 157 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK09245 157 RIIG--MARAAEMAFTGDAIDAATALEWGLVSRVVPAD 192 (266)
T ss_pred HHhh--HHHHHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence 1111 12223333345678999999999999998754
No 91
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=97.87 E-value=0.00027 Score=65.52 Aligned_cols=144 Identities=12% Similarity=0.155 Sum_probs=87.1
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcHH-------------HHHHHHHHHhhcCCCEEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYET-------------EAFAIYDVMGYVKPPIFTLC 176 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V~-------------aglaIyd~m~~ik~~V~Tv~ 176 (295)
++.++.+.+...+..++.++..+-| .|.+.| .. ..|-.+..+. ....++..|..++.||.+.+
T Consensus 32 l~~~~~~~l~~~l~~~~~d~~v~~v--Vltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 109 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAADPSIRAV--VLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAI 109 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEE--EEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4566778888877777654333333 334444 11 1222221110 01234556677889999999
Q ss_pred eccchhHHHHHHhcccCCCEEeccCceeEEeccc-ccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI-GRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 177 ~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~-~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
-|.|.+.|.-|++++ +.|++.++++|.+-... .|. -+-.. . .. +.+..| .....+++-
T Consensus 110 ~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~~G~~p~~g~-~-------~~--------l~~~vG--~~~a~~l~l 169 (262)
T PRK06144 110 AGACVGGGAAIAAAC--DLRIATPSARFGFPIARTLGNCLSMSN-L-------AR--------LVALLG--AARVKDMLF 169 (262)
T ss_pred CCeeeehHHHHHHhC--CEEEecCCCEeechhHHhccCCCCccH-H-------HH--------HHHHhC--HHHHHHHHH
Confidence 999999999999998 78999999988553221 221 11100 0 01 222222 233444454
Q ss_pred CCcccCHHHHHHcCCeeEEccCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~ 277 (295)
....++|+||+++||||+|+..+
T Consensus 170 ~g~~~~a~eA~~~Glv~~vv~~~ 192 (262)
T PRK06144 170 TARLLEAEEALAAGLVNEVVEDA 192 (262)
T ss_pred cCCCcCHHHHHHcCCcCeecCHH
Confidence 56788999999999999999763
No 92
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=97.87 E-value=0.00026 Score=64.99 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=86.1
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCc-H------HHHHHHHHHHhhcCCCEEEEEeccchhH
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGY-E------TEAFAIYDVMGYVKPPIFTLCVGNAWGE 183 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~-V------~aglaIyd~m~~ik~~V~Tv~~G~AAS~ 183 (295)
++.++...+...+..++. +..+ .+.|.+.|.. ..|-.+.. . .....++..|..++.||...+-|.|.+.
T Consensus 24 l~~~~~~~l~~al~~~~~-~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg 100 (243)
T PRK07854 24 LNAELCEELREAVRKAVD-ESAR--AIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA 100 (243)
T ss_pred CCHHHHHHHHHHHHHHhc-CCce--EEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence 677777888887777663 3232 3444555522 12222221 1 1123456677788899999999999999
Q ss_pred HHHHHhcccCCCEEeccCceeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHH
Q 022570 184 AALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPS 262 (295)
Q Consensus 184 galIlaaG~kgkR~alPnS~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~ 262 (295)
|..|.+++ +.|++.++++|.+-....|. -+... . ..+.+..| .....+++=....++|+
T Consensus 101 G~~lal~c--D~~ia~~~a~f~~pe~~~G~~p~~g~-~---------------~~l~~~~G--~~~a~~l~ltg~~~~a~ 160 (243)
T PRK07854 101 GLQLAMAC--DLRVVAPEAYFQFPVAKYGIALDNWT-I---------------RRLSSLVG--GGRARAMLLGAEKLTAE 160 (243)
T ss_pred HHHHHHhC--CEEEEcCCCEEeccccccccCCCccH-H---------------HHHHHHhC--HHHHHHHHHcCCCcCHH
Confidence 99999998 68999999987643322222 11110 0 01122222 22333444445678999
Q ss_pred HHHHcCCeeEEcc
Q 022570 263 EAVEYGIIDKVLY 275 (295)
Q Consensus 263 EAleyGLID~Ii~ 275 (295)
||+++||||+|..
T Consensus 161 eA~~~Glv~~v~~ 173 (243)
T PRK07854 161 QALATGMANRIGT 173 (243)
T ss_pred HHHHCCCcccccC
Confidence 9999999999953
No 93
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=97.87 E-value=0.00028 Score=66.07 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=88.3
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH----------------HHHHHHHHHhhcCCCEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET----------------EAFAIYDVMGYVKPPIFT 174 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~----------------aglaIyd~m~~ik~~V~T 174 (295)
++.++...+...+..++.++..+- +.|.+.|.. -.|-.+.... ....+++.|..++.||..
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 109 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAGV--LVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIA 109 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceE--EEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 567777888877777775443343 333455521 1222221110 012345667788899999
Q ss_pred EEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-c-chHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 022570 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEAD 252 (295)
Q Consensus 175 v~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G-~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~ 252 (295)
.+-|.|.+.|.-|++++ +.|++.++++|.+-....|.. + -.. ..+.+..| .....++
T Consensus 110 av~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~Gl~p~~g~~-----------------~~l~~~iG--~~~a~~l 168 (275)
T PRK09120 110 MVNGWCFGGGFSPLVAC--DLAIAADEAQFGLSEINWGIPPGGGVS-----------------KAMADTVG--HRDALYY 168 (275)
T ss_pred EEcCEEechhHHHHHhC--CEEEEeCCcEecCCccccCCCCCcchH-----------------HHHHHHcC--HHHHHHH
Confidence 99999999999999998 689999999887633333321 1 011 01111222 2233344
Q ss_pred hcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 253 IRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 253 ~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
+=....|+|+||+++||||+|+..++
T Consensus 169 lltg~~~~A~eA~~~Glv~~vv~~~~ 194 (275)
T PRK09120 169 IMTGETFTGRKAAEMGLVNESVPLAQ 194 (275)
T ss_pred HhcCCccCHHHHHHcCCcceecCHHH
Confidence 43456789999999999999987543
No 94
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=97.86 E-value=0.00025 Score=65.68 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=87.4
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcH-----------H--HHHHHHHHHhhcCCCEEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYE-----------T--EAFAIYDVMGYVKPPIFTLC 176 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V-----------~--aglaIyd~m~~ik~~V~Tv~ 176 (295)
++.++.+.+...+..++.++..+- +.|.+.| .. ..|-.+... . ....+++.|..++.||...+
T Consensus 27 l~~~~~~el~~~l~~~~~d~~vr~--vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (259)
T TIGR01929 27 FRPLTVKEIIQALDDAREDPDIGV--VILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMV 104 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEE--EEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 556677788777777765443333 3334444 11 122211100 0 11235667788889999999
Q ss_pred eccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQ-ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 177 ~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~-asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. +- .... +.+..| .....+++-
T Consensus 105 ~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G~~p~~~~~~~-----------------l~~~vG--~~~a~~l~l 163 (259)
T TIGR01929 105 NGYAIGGGHVLHVVC--DLTIAAENARFGQTGPKVGSFDGGYGSSY-----------------LARIVG--QKKAREIWF 163 (259)
T ss_pred cCEEehHHHHHHHhC--CEEEecCCCEecCcccccccCCCccHHHH-----------------HHHHhH--HHHHHHHHH
Confidence 999999999999998 689999999988766554431 11 1110 011111 112233333
Q ss_pred CCcccCHHHHHHcCCeeEEccCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~ 277 (295)
....++|+||+++||||+|+..+
T Consensus 164 ~g~~~~a~eA~~~Glv~~vv~~~ 186 (259)
T TIGR01929 164 LCRQYDAEQALDMGLVNTVVPLA 186 (259)
T ss_pred hCCccCHHHHHHcCCcccccCHH
Confidence 34568999999999999998753
No 95
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=97.85 E-value=0.0004 Score=64.05 Aligned_cols=144 Identities=11% Similarity=0.026 Sum_probs=85.4
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHHH-------HHHHHHHH-hhcCCCEEEEEeccchh
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYETE-------AFAIYDVM-GYVKPPIFTLCVGNAWG 182 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~a-------glaIyd~m-~~ik~~V~Tv~~G~AAS 182 (295)
++.++...+.+.|..++.++..+-| .|.+.|.. -.|-.+..+.. ...+...+ ...+.||...+-|.|.+
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~v--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 104 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADPDLSVG--ILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALA 104 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEE--EEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEeh
Confidence 5677888888888887755444433 34454521 12222111100 00111111 34678999999999999
Q ss_pred HHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCH
Q 022570 183 EAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSP 261 (295)
Q Consensus 183 ~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA 261 (295)
.|.-|.+++ +.|++.++++|.+-....|.. +-.. ... +.+..| ...-.+++-....++|
T Consensus 105 gG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~--------l~~~vg--~~~a~~l~l~g~~~~a 164 (254)
T PRK08252 105 GGFELALAC--DLIVAARDAKFGLPEVKRGLVAAGGG--------LLR--------LPRRIP--YHIAMELALTGDMLTA 164 (254)
T ss_pred HHHHHHHhC--CEEEEeCCCEEeCchhhcCCCCCchH--------HHH--------HHHHcC--HHHHHHHHHcCCccCH
Confidence 999999998 689999999886533333321 1110 001 111222 3334444445567899
Q ss_pred HHHHHcCCeeEEccCC
Q 022570 262 SEAVEYGIIDKVLYTE 277 (295)
Q Consensus 262 ~EAleyGLID~Ii~~~ 277 (295)
+||+++||||+|+..+
T Consensus 165 ~eA~~~Glv~~vv~~~ 180 (254)
T PRK08252 165 ERAHELGLVNRLTEPG 180 (254)
T ss_pred HHHHHcCCcceecCcc
Confidence 9999999999999754
No 96
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=97.84 E-value=0.00035 Score=65.26 Aligned_cols=143 Identities=15% Similarity=0.198 Sum_probs=88.2
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcH----------H---HHHHHHHHHhhcCCCEEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYE----------T---EAFAIYDVMGYVKPPIFTLC 176 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V----------~---aglaIyd~m~~ik~~V~Tv~ 176 (295)
++.++...+...|..++.++..+-|. |.+.| .. -.|-.+... . ....+++.|..++.||...+
T Consensus 37 l~~~~~~~l~~al~~~~~d~~vr~vV--ltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDDNIGVII--LTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMV 114 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEE--EEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEE
Confidence 56778888888888777554444333 33434 11 122221100 0 11235567778889999999
Q ss_pred eccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQ-ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 177 ~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~-asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
-|.|.+.|.-|.+++ +.|++.++++|.+-.+..|.. +- ... . +.+..| .....+++-
T Consensus 115 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~~~~~---------~--------l~~~vG--~~~a~~l~l 173 (273)
T PRK07396 115 AGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPKVGSFDGGYGAS---------Y--------LARIVG--QKKAREIWF 173 (273)
T ss_pred CCEEehHHHHHHHhC--CEEEeeCCcEEecccccccccCCchHHH---------H--------HHHHhh--HHHHHHHHH
Confidence 999999999999998 789999999987655543321 11 110 0 111111 222333343
Q ss_pred CCcccCHHHHHHcCCeeEEccCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~ 277 (295)
....|+|+||+++||||+|+..+
T Consensus 174 tg~~~~A~eA~~~GLv~~vv~~~ 196 (273)
T PRK07396 174 LCRQYDAQEALDMGLVNTVVPLA 196 (273)
T ss_pred hCCCcCHHHHHHcCCcCeecCHH
Confidence 45678999999999999998753
No 97
>PRK08788 enoyl-CoA hydratase; Validated
Probab=97.83 E-value=0.00041 Score=65.79 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=61.3
Q ss_pred hcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 022570 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP 246 (295)
Q Consensus 167 ~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~ 246 (295)
..+.||...+-|.|.+.|.-|.+++ +.|++.++++|.+-....|. ..+..- ...+.+..| .
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pev~lGl---~p~~g~------------~~~l~~~vG--~ 179 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSH--HTIIAERGAKMGFPEILFNL---FPGMGA------------YSFLARRVG--P 179 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEeeCchhhhCc---CCCchH------------HHHHHHHhh--H
Confidence 4678899999999999999999998 68999999887643333232 111100 001122222 2
Q ss_pred HHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 247 EQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 247 e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
....+++-....|+|+||+++||||+|+..+
T Consensus 180 ~~A~ellltG~~l~A~eA~~~GLV~~vv~~~ 210 (287)
T PRK08788 180 KLAEELILSGKLYTAEELHDMGLVDVLVEDG 210 (287)
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 3334444455678999999999999998754
No 98
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=97.83 E-value=0.00038 Score=64.31 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=88.0
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH--------------H--HHHHHHHHhhcCCCEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET--------------E--AFAIYDVMGYVKPPIFT 174 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~--------------a--glaIyd~m~~ik~~V~T 174 (295)
++.++...+.+.+..++ ++..+-|.| .+.|.. ..|..+.... . ...++..|..++.||.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARALLL--TGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIA 104 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEE--ECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 56677788888888877 554444443 444522 1222221110 0 01245677788899999
Q ss_pred EEeccchhHHHHHHhcccCCCEEeccCceeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 022570 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADI 253 (295)
Q Consensus 175 v~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~ 253 (295)
.+-|.|.+.|.-|++++ +.|++.++++|.+-....|. -+...-. .+ .+.- ......+++
T Consensus 105 av~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G~~p~~g~~~--------~l--------~~~v--G~~~a~~l~ 164 (262)
T PRK08140 105 AVNGVAAGAGANLALAC--DIVLAARSASFIQAFVKIGLVPDSGGTW--------FL--------PRLV--GMARALGLA 164 (262)
T ss_pred EECCeeehhHHHHHHhC--CEEEecCCCEEeccccccCCCCCccHHH--------HH--------HHHh--CHHHHHHHH
Confidence 99999999999999998 78999999998753333232 1111000 01 1111 122333444
Q ss_pred cCCcccCHHHHHHcCCeeEEccCC
Q 022570 254 RRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 254 ~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
-...-++|+||+++||||+|...+
T Consensus 165 l~g~~~~a~eA~~~Glv~~vv~~~ 188 (262)
T PRK08140 165 LLGEKLSAEQAEQWGLIWRVVDDA 188 (262)
T ss_pred HcCCCcCHHHHHHcCCccEeeChH
Confidence 445668999999999999999754
No 99
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=97.81 E-value=0.00046 Score=63.87 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=92.0
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH--------H-H---HH-H--HHH
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET--------E-A---FA-I--YDV 164 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~--------a-g---la-I--yd~ 164 (295)
|.|+-| ++.++...+...+..++.++..+- +.|.+.|.. ..|-.+..+. . . .. + ...
T Consensus 18 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (263)
T PRK07799 18 VTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRS--CILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLK 95 (263)
T ss_pred EEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHH
Confidence 556654 667788888888888876554443 334455522 1222221110 0 0 00 1 112
Q ss_pred HhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022570 165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFG 243 (295)
Q Consensus 165 m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG 243 (295)
+..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+.....|.. +-..- .. +.+..
T Consensus 96 ~~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~--------~~--------l~r~v- 156 (263)
T PRK07799 96 GRRLTKPLIAAVEGPAIAGGTEILQGT--DIRVAGESAKFGISEAKWSLFPMGGSA--------VR--------LVRQI- 156 (263)
T ss_pred HhcCCCCEEEEECCeEeccHHHHHHhC--CEEEecCCCEecCcccccCcCCCccHH--------HH--------HHHHh-
Confidence 356688999999999999999999998 789999999886644443321 11110 00 11111
Q ss_pred CCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 244 KTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 244 ~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
......+++-....|+|+||+++||||+|+..+.
T Consensus 157 -G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 157 -PYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred -CHHHHHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence 2334445555567789999999999999997643
No 100
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=97.79 E-value=0.00046 Score=63.79 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=85.8
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHHH--H--H------HHHHHHhhcCCCEEEEEeccc
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYETE--A--F------AIYDVMGYVKPPIFTLCVGNA 180 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~a--g--l------aIyd~m~~ik~~V~Tv~~G~A 180 (295)
++.++...+...|..++.++..+ .+.|.+.|.. -.|-.+..+.. . . ..+..+..++.||.+.+-|.|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr--~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a 104 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADDAAS--VAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYA 104 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEE
Confidence 56677888888888877654334 3334454522 12222211110 0 0 011122346789999999999
Q ss_pred hhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCccc
Q 022570 181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYF 259 (295)
Q Consensus 181 AS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~m 259 (295)
.+.|.-|.+++ +.|++.++++|.+-....|.. +... ... +.+..| .....+++-....|
T Consensus 105 ~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~--------l~~~iG--~~~a~~lll~g~~~ 164 (254)
T PRK08259 105 VAGGLELALWC--DLRVAEEDAVFGVFCRRWGVPLIDGG--------TVR--------LPRLIG--HSRAMDLILTGRPV 164 (254)
T ss_pred EhHHHHHHHhC--CEEEecCCCEecCcccccCCCCCccH--------HHH--------HHHHhC--HHHHHHHHHcCCcc
Confidence 99999999998 789999999876533332221 1000 000 111222 33344555556678
Q ss_pred CHHHHHHcCCeeEEccCCC
Q 022570 260 SPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 260 sA~EAleyGLID~Ii~~~~ 278 (295)
+|+||+++||||+|+..+.
T Consensus 165 ~a~eA~~~Glv~~vv~~~~ 183 (254)
T PRK08259 165 DADEALAIGLANRVVPKGQ 183 (254)
T ss_pred CHHHHHHcCCCCEeeChhH
Confidence 9999999999999997643
No 101
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.76 E-value=0.00071 Score=62.52 Aligned_cols=147 Identities=5% Similarity=0.007 Sum_probs=88.7
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH--------------HHHHHHHHHH
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE--------------TEAFAIYDVM 165 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V--------------~aglaIyd~m 165 (295)
|.|+.| ++.++...+...+..++ +..+- |.|.+.|.. ..|-.++.. .....++..|
T Consensus 17 itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~--vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (255)
T PRK07112 17 LQLHRPEAQNTINDRLIAECMDVLDRCE--HAATI--VVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRL 92 (255)
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceE--EEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 445554 56677778877777766 22332 233333421 122222111 0012355567
Q ss_pred hhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022570 166 GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKT 245 (295)
Q Consensus 166 ~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s 245 (295)
..++.||.+.+-|.|.+.|..|.+++ +.|++.++++|.+.....|... .... . .+.+.. .
T Consensus 93 ~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p---~~~~-~------------~l~~~v--g 152 (255)
T PRK07112 93 ATGPYVTIAHVRGKVNAGGIGFVAAS--DIVIADETAPFSLSELLFGLIP---ACVL-P------------FLIRRI--G 152 (255)
T ss_pred HcCCCCEEEEEecEEEcchhHHHHcC--CEEEEcCCCEEeCchhhhccCc---chhh-H------------HHHHHh--C
Confidence 77889999999999999999999998 6899999999877555444321 1100 0 011122 2
Q ss_pred HHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 246 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 246 ~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
.....+++-...-++|+||+++||||+|+..
T Consensus 153 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 183 (255)
T PRK07112 153 TQKAHYMTLMTQPVTAQQAFSWGLVDAYGAN 183 (255)
T ss_pred HHHHHHHHHhCCcccHHHHHHcCCCceecCc
Confidence 2333344444567899999999999999874
No 102
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=97.75 E-value=0.00028 Score=66.98 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=93.4
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCc-H---------------HHH-----
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGY-E---------------TEA----- 158 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~-V---------------~ag----- 158 (295)
|.|+-| ++.++...+.+.|..++.++..+-|.| .+.|.. -.|-.++. . ...
T Consensus 18 ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVL--tG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (298)
T PRK12478 18 ITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVL--RGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVT 95 (298)
T ss_pred EEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcccCcCccccccccchhcccccccCchhhhhhhh
Confidence 556644 577788888888887775543343333 344411 11211211 0 000
Q ss_pred ------HHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEecccc-ccccchHHHHHHHHHHHHHH
Q 022570 159 ------FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIG-RIEGQATDVEIARKEMKNVK 231 (295)
Q Consensus 159 ------laIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~-g~~G~asDi~i~a~ei~~~~ 231 (295)
...+..|..+++||...+-|.|.+.|.-|.+++ +.|++.++++|.+-.... |... ...
T Consensus 96 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~A~f~~pe~~l~G~~~--~~~----------- 160 (298)
T PRK12478 96 ARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCA--DIVIASDDAVIGTPYSRMWGAYL--TGM----------- 160 (298)
T ss_pred hhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHC--CEEEEcCCcEEeccccccccCCc--hhH-----------
Confidence 124556778889999999999999999999998 689999999987655542 3321 000
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 232 AELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 232 ~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
+..+ ....+..+++-....++|+||+++||||+|+..+
T Consensus 161 ------~~~~--vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~ 198 (298)
T PRK12478 161 ------WLYR--LSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFE 198 (298)
T ss_pred ------HHHH--hhHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 0011 1334445565566788999999999999999753
No 103
>PRK08321 naphthoate synthase; Validated
Probab=97.74 E-value=0.0007 Score=64.29 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=64.8
Q ss_pred HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEec-cCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY 238 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~al-PnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iy 238 (295)
+++.|..++.||...+-|.|.+.|.-|++++ +.|++. ++++|.+-....|.. +-..-. .+
T Consensus 127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~Gl~p~~~~~~----------------~L 188 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVC--DLTLASREHARFKQTDADVGSFDGGYGSA----------------YL 188 (302)
T ss_pred HHHHHHcCCCCEEEEEcCeeehHHHHHHHhC--CEEEEecCCCEEECCccccccCCCchHHH----------------HH
Confidence 4456777889999999999999999999998 689999 688876543333321 111000 01
Q ss_pred HHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 239 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 239 a~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
.+..| .....+++=....++|+||+++||||+|+..+
T Consensus 189 ~r~vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~ 225 (302)
T PRK08321 189 ARQVG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPHA 225 (302)
T ss_pred HHHhC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCHH
Confidence 11222 22233444445678999999999999999854
No 104
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.72 E-value=0.00067 Score=66.46 Aligned_cols=162 Identities=16% Similarity=0.067 Sum_probs=96.9
Q ss_pred CCCCCChhhhhccCcEEEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCC-C-CCCCCCCcH-------
Q 022570 90 EQPPPDLASYLYKNRIVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-T-KGGEKLGYE------- 155 (295)
Q Consensus 90 ~~~~~Di~s~Ll~eRIIfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~-~-~~~~~~G~V------- 155 (295)
|+-.+++|... |.|+-| ++.++...+...+..++.++..+- +.|-+.|. . -.|-.+..+
T Consensus 30 ~~~~~~~~~A~-----ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrv--VVLTG~G~kaFCAG~DLke~~~~~~~~ 102 (360)
T TIGR03200 30 GNVVPGLYNAW-----IILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVA--VVFTAVGDKAFCTGGNTKEYAEYYAGN 102 (360)
T ss_pred CCccCceEEEE-----EEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceE--EEEEcCCCCcccCCcCHHHHhhhcccC
Confidence 45556777632 233433 677888888888888775443332 33334341 1 111111110
Q ss_pred --------HHHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-c-chHHHHHHHH
Q 022570 156 --------TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARK 225 (295)
Q Consensus 156 --------~aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G-~asDi~i~a~ 225 (295)
.....+++.|..++.||...+-|.|.+.|.-|.+++ +.|++.++++|-+-....|.. + -....
T Consensus 103 ~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaC--DlrIAse~A~Fg~PE~rlGl~P~~Ggt~r----- 175 (360)
T TIGR03200 103 PQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAA--DFTIAQDLANFGQAGPKHGSAPIGGATDF----- 175 (360)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhC--CEEEEcCCCEEeCchhccCCCCCccHHHH-----
Confidence 111245667888899999999999999999999998 689999999987654443321 1 11111
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCCC
Q 022570 226 EMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 279 (295)
Q Consensus 226 ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~~ 279 (295)
+....| ......++-....++|+||+++||||+|+...+.
T Consensus 176 ------------LprlvG--~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 176 ------------LPLMIG--CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred ------------HHHhhC--HHHHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 000111 1112222222457799999999999999986553
No 105
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=97.71 E-value=0.00022 Score=65.97 Aligned_cols=138 Identities=15% Similarity=0.104 Sum_probs=86.7
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH------H-------HHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET------E-------AFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~------a-------glaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++...+...+..++ ++..+ .|.+.+.|.. ..|-.+..+. . ...++..|..++.||.+.+-
T Consensus 30 l~~~~~~~l~~~l~~~~-d~~vr--vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~ 106 (260)
T PRK07659 30 LDEPMLKELLQALKEVA-ESSAH--IVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIH 106 (260)
T ss_pred CCHHHHHHHHHHHHHhc-CCCee--EEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 56677788888877773 33222 3444555522 1222221110 0 11234456677889999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCceeEEeccccccc---cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~---G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
|.|.+.|.-|.+++ +.|++.++++|-+.....|.. |-..- +.+. .......+++-
T Consensus 107 G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------L~~~--vg~~~a~~l~l 164 (260)
T PRK07659 107 GPAAGLGLSIALTA--DYVIADISAKLAMNFIGIGLIPDGGGHFF------------------LQKR--VGENKAKQIIW 164 (260)
T ss_pred CceecHHHHHHHhC--CEEEEcCCCEEcCchhhcCCCCCCchhhh------------------HHHh--cCHHHHHHHHH
Confidence 99999999999998 789999999986655443331 11111 1111 22344445555
Q ss_pred CCcccCHHHHHHcCCeeEEc
Q 022570 255 RPKYFSPSEAVEYGIIDKVL 274 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii 274 (295)
....|+|+||+++||||+|+
T Consensus 165 tg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 165 EGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred hCCccCHHHHHHcCChHHHh
Confidence 56778999999999999998
No 106
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=97.71 E-value=0.00061 Score=63.35 Aligned_cols=143 Identities=14% Similarity=0.178 Sum_probs=85.5
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH---------------HHHHHHHHHhhcCCCEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET---------------EAFAIYDVMGYVKPPIFTL 175 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~---------------aglaIyd~m~~ik~~V~Tv 175 (295)
++.++...+.+.+..++.++..+-|. |.+.|.. -.|-.+..+. ....++..|..++.||.+.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr~vV--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLRFLL--LRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAV 107 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEE--EECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEE
Confidence 56667777777777776544444333 3444421 1222211110 0123455666778999999
Q ss_pred EeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 022570 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR 255 (295)
Q Consensus 176 ~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~r 255 (295)
+-|.|.+.|.-|++++ +.|++.++++|.+-....|.. .+.... .+.+..| .....+++=.
T Consensus 108 V~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~Gi~---p~~~~~-------------~l~~~vG--~~~a~~l~lt 167 (265)
T PRK05674 108 VQGAAFGGALGLISCC--DMAIGADDAQFCLSEVRIGLA---PAVISP-------------FVVKAIG--ERAARRYALT 167 (265)
T ss_pred EcCEEEechhhHhhhc--CEEEEeCCCEEeCcccccCCC---cchhHH-------------HHHHHhC--HHHHHHHHHh
Confidence 9999999999999998 689999999887633333321 111100 0111112 1223333334
Q ss_pred CcccCHHHHHHcCCeeEEccC
Q 022570 256 PKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 256 d~~msA~EAleyGLID~Ii~~ 276 (295)
..-|+|+||+++||||+|...
T Consensus 168 g~~~~a~eA~~~Glv~~vv~~ 188 (265)
T PRK05674 168 AERFDGRRARELGLLAESYPA 188 (265)
T ss_pred CcccCHHHHHHCCCcceecCH
Confidence 456799999999999999874
No 107
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.70 E-value=0.0014 Score=60.14 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=85.6
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH--------------HHHHHHHHHHhhcCCCEEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE--------------TEAFAIYDVMGYVKPPIFTLC 176 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V--------------~aglaIyd~m~~ik~~V~Tv~ 176 (295)
++.++...+...+..++.++.... .|.+.+.|.. -.|-.+... .....++..|..++.||...+
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~~-vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 101 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPGS-VLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAV 101 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCce-EEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 677777888888877775432222 3333443422 122222111 011224556777889999999
Q ss_pred eccchhHHHHHHhcccCCCEEecc-CceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHhc
Q 022570 177 VGNAWGEAALLLGAGAKGNRAALP-SSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI-EADIR 254 (295)
Q Consensus 177 ~G~AAS~galIlaaG~kgkR~alP-nS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I-~~~~~ 254 (295)
-|.|.+.|..|.+++ +.|++.+ .++|.+-....|... .+.. ...+.+..|. ... .+++-
T Consensus 102 ~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~Gl~~--p~~~-------------~~~l~~~vG~--~~a~~~lll 162 (239)
T PLN02267 102 TGHASAAGFILALSH--DYVLMRKDRGVLYMSEVDIGLPL--PDYF-------------MALLRAKIGS--PAARRDVLL 162 (239)
T ss_pred CCcchHHHHHHHHHC--CEEEecCCCCeEeccccccCCCC--ChHH-------------HHHHHHHcCh--HHHHHHHHH
Confidence 999999999998888 6899985 456654443333311 1100 0011222232 222 24444
Q ss_pred CCcccCHHHHHHcCCeeEEccC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~ 276 (295)
....|+|+||+++||||+|...
T Consensus 163 tG~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 163 RAAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred cCCcCCHHHHHHCCCcceecCC
Confidence 5577899999999999999974
No 108
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=97.69 E-value=0.00082 Score=63.64 Aligned_cols=148 Identities=12% Similarity=0.099 Sum_probs=92.5
Q ss_pred EEEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH----------------------
Q 022570 105 IVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET---------------------- 156 (295)
Q Consensus 105 IIfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~---------------------- 156 (295)
+|.|+-| ++.++...+.+.+..++.++..+- +.|.+.|.. -.|-.+..+.
T Consensus 22 ~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrv--vVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (302)
T PRK08272 22 RITLNRPEKGNAITADTPLELRAAVERADLDPGVHV--ILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHL 99 (302)
T ss_pred EEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceE--EEEEcCCCCcccCcCHHHHhhccccccccccccccccccccc
Confidence 3556655 567788888888887776544443 334444521 1222221110
Q ss_pred ---------------HHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHH
Q 022570 157 ---------------EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVE 221 (295)
Q Consensus 157 ---------------aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~ 221 (295)
....++..|..++.||...+-|.|.+.|.-|++++ +.|++.++++|.+ |.....|-+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~~ias~~a~f~~--pe~~~gg~~~~-- 173 (302)
T PRK08272 100 PDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHC--DQVIAADDAKIGY--PPTRVWGVPAT-- 173 (302)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhC--CEEEEeCCCEecC--cchhcccCChH--
Confidence 11134566778889999999999999999999998 6899999998754 33222221110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 222 IARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 222 i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
. . +.... ......+++=....++|+||+++||||+|+..
T Consensus 174 --~--~----------~~~~v--G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~ 212 (302)
T PRK08272 174 --G--M----------WAYRL--GPQRAKRLLFTGDCITGAQAAEWGLAVEAVPP 212 (302)
T ss_pred --H--H----------HHHHh--hHHHHHHHHHcCCccCHHHHHHcCCCceecCH
Confidence 0 0 11122 23444455555677899999999999999864
No 109
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.67 E-value=0.00025 Score=67.05 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=99.7
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHH----------HHHHHHHHhhcCCCEEEEEeccch
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETE----------AFAIYDVMGYVKPPIFTLCVGNAW 181 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~a----------glaIyd~m~~ik~~V~Tv~~G~AA 181 (295)
++..+..++...+..++.++..+-|.||= +.++--.|-+|..+.. -+..++.+..++.||...+-|.|.
T Consensus 61 l~~~~m~eL~~A~~~~e~D~s~~viVltG-~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Al 139 (290)
T KOG1680|consen 61 LCRATMLELAEAFKDFESDDSVGVIVLTG-SGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFAL 139 (290)
T ss_pred ccHHHHHHHHHHHHHhhccCcccEEEEEc-CCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceee
Confidence 55677888888888899887777777662 2121113333222221 345677788899999999999999
Q ss_pred hHHHHHHhcccCCCEEeccCceeEEecccccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcc
Q 022570 182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRI---EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKY 258 (295)
Q Consensus 182 S~galIlaaG~kgkR~alPnS~iMIHqp~~g~---~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~ 258 (295)
..|.-|.+.+ +-|+|.|+|.|+.-++.-|. .|=..-+. + .-| ..+-.+++-....
T Consensus 140 gGG~ELalmC--Dirva~~~Akfg~~~~~~Gi~p~~GGT~rl~--------------r----~vG--~s~Ale~~ltg~~ 197 (290)
T KOG1680|consen 140 GGGLELALMC--DIRVAGEGAKFGFFEIRMGIIPSWGGTQRLP--------------R----IVG--KSRALEMILTGRR 197 (290)
T ss_pred ccchhhhhhc--ceEeccCCCeecccccccCCccCCCchhhHH--------------H----HhC--hHHHHHHHHhcCc
Confidence 9999999988 68999999999988776543 22111111 1 112 2333455556788
Q ss_pred cCHHHHHHcCCeeEEccCCC
Q 022570 259 FSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 259 msA~EAleyGLID~Ii~~~~ 278 (295)
++|+||++.|||++|+...+
T Consensus 198 ~~AqeA~~~GlVn~Vvp~~~ 217 (290)
T KOG1680|consen 198 LGAQEAKKIGLVNKVVPSGD 217 (290)
T ss_pred ccHHHHHhCCceeEeecchh
Confidence 89999999999999998766
No 110
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=97.62 E-value=0.00049 Score=63.26 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=85.9
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH------------HHHHHHHHHHhhcCCCEEEEEec
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V------------~aglaIyd~m~~ik~~V~Tv~~G 178 (295)
++.++...+...+..++.++..+- +.|.+.|.. -.|-.+..+ ......+..|..++.||...+-|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 104 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEADPDVHA--LVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNG 104 (249)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeE--EEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 566778888888887775443333 333455522 122221111 01122345566788999999999
Q ss_pred cchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCc
Q 022570 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPK 257 (295)
Q Consensus 179 ~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~ 257 (295)
.|.+.|.-|.+++ +.|++.++++|.+.....|.. +-..-. .+.+.. ......+++=...
T Consensus 105 ~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~~~----------------~l~~~~--G~~~a~~l~ltg~ 164 (249)
T PRK05870 105 AAVGAGLNLALAA--DVRIAGPKALFDARFQKLGLHPGGGATW----------------MLQRAV--GPQVARAALLFGM 164 (249)
T ss_pred EeEchhHHHHHhC--CEEEEcCCCEEeCcccccCcCCCCccee----------------eHHhhh--CHHHHHHHHHhCC
Confidence 9999999999998 789999999987655443321 110000 011111 2223333333456
Q ss_pred ccCHHHHHHcCCeeEEc
Q 022570 258 YFSPSEAVEYGIIDKVL 274 (295)
Q Consensus 258 ~msA~EAleyGLID~Ii 274 (295)
.++|+||+++||||+|+
T Consensus 165 ~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 165 RFDAEAAVRHGLALMVA 181 (249)
T ss_pred ccCHHHHHHcCCHHHHH
Confidence 78999999999999998
No 111
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=97.58 E-value=0.00085 Score=62.02 Aligned_cols=141 Identities=15% Similarity=0.124 Sum_probs=81.7
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH---------------HHHHHHHHHHhhcCCCEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE---------------TEAFAIYDVMGYVKPPIFTL 175 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V---------------~aglaIyd~m~~ik~~V~Tv 175 (295)
++.++...+...+..++.++..+ .+.|.+.|.. -.|-.+..+ .....++..|..++.||.+.
T Consensus 30 l~~~~~~el~~~l~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAADPAVR--AVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAA 107 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCee--EEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45667777777777666543332 3334566622 122222111 01123455667778999999
Q ss_pred EeccchhHHHHHHhcccCCCEEeccCceeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 176 ~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
+-|.|.+.|.-|++++ +.|++.++++|.+-....|. -|-..-. .+. ++. . ....+++-
T Consensus 108 v~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~--------~l~-~l~--~--------~~a~~l~l 166 (260)
T PRK07827 108 IDGHVRAGGFGLVGAC--DIVVAGPESTFALTEARIGVAPAIISLT--------LLP-RLS--P--------RAAARYYL 166 (260)
T ss_pred EcCeeecchhhHHHhC--CEEEEcCCCEEeCcccccCCCCCcccch--------hHH-hhh--H--------HHHHHHHH
Confidence 9999999999999998 68999999987653333332 1111000 000 000 0 01112222
Q ss_pred CCcccCHHHHHHcCCeeEEcc
Q 022570 255 RPKYFSPSEAVEYGIIDKVLY 275 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~ 275 (295)
....++|+||+++||||+|.+
T Consensus 167 ~g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 167 TGEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred hCCccCHHHHHHcCCcccchH
Confidence 235579999999999999963
No 112
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.51 E-value=0.0018 Score=64.39 Aligned_cols=150 Identities=11% Similarity=0.043 Sum_probs=93.1
Q ss_pred cEEEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCC-CcHHH------------HH----HH
Q 022570 104 RIVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKL-GYETE------------AF----AI 161 (295)
Q Consensus 104 RIIfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~-G~V~a------------gl----aI 161 (295)
++|.|+-| ++.++...+...|..++.++..+- +.|.+.|. .++. |++.+ +. ..
T Consensus 53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrv--VVL~G~Gk---aFcAGgDl~~l~~~~~~~~~~~~~~~f~~~ 127 (407)
T PLN02851 53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGF--VLMKGSGR---AFCSGADVVSLYHLINEGNVEECKLFFENL 127 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceE--EEEECCCC---CccCCcCHHHHHhhccccchHHHHHHHHHH
Confidence 57888877 778899999999988886654443 33345551 1111 22211 11 12
Q ss_pred H---HHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 022570 162 Y---DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY 238 (295)
Q Consensus 162 y---d~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iy 238 (295)
| ..|..+++||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. .|+.... .+-++-... ..|
T Consensus 128 ~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~--D~rVate~a~famPE~~iGl~---PdvG~s~-~L~rl~g~~-g~~ 200 (407)
T PLN02851 128 YKFVYLQGTYLKPNVAIMDGITMGCGAGISIPG--MFRVVTDKTVFAHPEVQMGFH---PDAGASY-YLSRLPGYL-GEY 200 (407)
T ss_pred HHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhC--CEEEEeCCceEecchhccCCC---CCccHHH-HHHHhcCHH-HHH
Confidence 2 24456789999999999999999999998 689999888876655444431 1111000 011111111 112
Q ss_pred HHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 239 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 239 a~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
++=....++++||+++||+|+++...+
T Consensus 201 -------------L~LTG~~i~a~eA~~~GLa~~~v~~~~ 227 (407)
T PLN02851 201 -------------LALTGQKLNGVEMIACGLATHYCLNAR 227 (407)
T ss_pred -------------HHHhCCcCCHHHHHHCCCceeecCHhh
Confidence 122345679999999999999997764
No 113
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.49 E-value=0.00089 Score=68.91 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=63.9
Q ss_pred HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccC--ceeEEeccc-ccc-ccchHHHHHHHHHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIMIKQPI-GRI-EGQATDVEIARKEMKNVKAELVK 236 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPn--S~iMIHqp~-~g~-~G~asDi~i~a~ei~~~~~~i~~ 236 (295)
+.+.|..++.||...+-|.|.+.|..|.+++ +.|++.++ ++|.+-... .|. -|-.. . .
T Consensus 115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALac--D~rIas~~~~a~fg~pEv~~~Gl~P~~gg-~---~------------ 176 (550)
T PRK08184 115 IEDSSRHSGLKFIAAVNGTCAGGGYELALAC--DEIVLVDDRSSAVSLPEVPLLGVLPGTGG-L---T------------ 176 (550)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEccchhccccCCCcch-H---H------------
Confidence 4556777889999999999999999999998 68999987 555442221 221 11110 0 0
Q ss_pred HHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 237 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 237 iya~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
.+............+++-....|+++||+++||||+|+..+
T Consensus 177 rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d 217 (550)
T PRK08184 177 RVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPS 217 (550)
T ss_pred HhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHH
Confidence 01111122333334444345678999999999999999753
No 114
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=97.48 E-value=0.002 Score=58.91 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=103.9
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeE-EEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEeccchhH
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGE 183 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~-LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~ 183 (295)
-|.+++++-+.-+......|..- ...--++ +.+|||| |+|..++++-..++..+-++..-....|+|+
T Consensus 78 ~VvVse~~a~~da~sal~~lir~---~G~y~~t~v~lnSpG--------Gsv~kA~~mgkLiRe~gfdt~v~s~A~Casa 146 (245)
T COG3904 78 PVVVSEPGANVDAASALGRLIRK---AGLYIATGVTLNSPG--------GSVAKACSMGKLIREDGFDTAVDSGAMCASA 146 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHhc---cCceeEEEEEecCCC--------CcHHHHHhhhhhhhhcccCccccchhhhhcc
Confidence 35677777665555555555532 2233344 6789999 9999999999999999988877777899999
Q ss_pred HHHHHhcccCCCEEeccCceeEEecccccccc-chHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHhc----CCc
Q 022570 184 AALLLGAGAKGNRAALPSSTIMIKQPIGRIEG-QATDVEIARKEMK-NVKAELVKLYAKHFGKTPEQIEADIR----RPK 257 (295)
Q Consensus 184 galIlaaG~kgkR~alPnS~iMIHqp~~g~~G-~asDi~i~a~ei~-~~~~~i~~iya~~TG~s~e~I~~~~~----rd~ 257 (295)
-.++|++| -.|++-|.+.+.+||+.....- ..+..+ ++-.. +.-.+ ...|-...|...--++...+ +=+
T Consensus 147 Cpl~fagG--vrRvve~~ayiGVHq~~~~g~~~r~~~~~--a~Sanq~~tar-~a~ylrEMgigpgLlq~ml~tpp~dir 221 (245)
T COG3904 147 CPLMFAGG--VRRVVEDFAYIGVHQITTTGRRERIVNGK--AKSANQKVTAR-LAAYLREMGIGPGLLQMMLATPPSDIR 221 (245)
T ss_pred chhhhhcc--eeeeecccceeeeeeccccCCccccCcHh--hhhhhhhhHHH-HHHHHHHcCCCHHHHHHHhcCChHhhh
Confidence 99999999 4799999999999999854321 111111 11111 11122 22366677888776665553 447
Q ss_pred ccCHHHHHHcCCeeE
Q 022570 258 YFSPSEAVEYGIIDK 272 (295)
Q Consensus 258 ~msA~EAleyGLID~ 272 (295)
+++.+|-.+|.|+.+
T Consensus 222 ~l~~kem~~~~L~t~ 236 (245)
T COG3904 222 QLGLKEMTAMKLVTS 236 (245)
T ss_pred hhhHHHHhhhccccc
Confidence 899999999988753
No 115
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=97.47 E-value=0.0012 Score=60.82 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=90.3
Q ss_pred eeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH-------------HHHHHHHHHhhcCCCEEEEE
Q 022570 111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET-------------EAFAIYDVMGYVKPPIFTLC 176 (295)
Q Consensus 111 ~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~-------------aglaIyd~m~~ik~~V~Tv~ 176 (295)
-++.++...+.+.+..++.++..+ .. .|-+.|.. .-|-.++.+. ....+...|..+++||...+
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr-~v-vltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 105 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVR-VV-VLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAV 105 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeE-EE-EEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEE
Confidence 356677888888888777653333 22 22333311 1222222211 11125668888899999999
Q ss_pred eccchhHHHHHHhcccCCCEEeccCceeEEecccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQ-ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 177 ~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~-~G~-asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
-|.|.+.|.-|++++ +.|++.++++|.+.....|. -|. .+.. +.+..| ...-.+++=
T Consensus 106 ~G~a~GgG~eLal~~--D~ria~~~a~f~~pe~~iGl~Pg~g~~~~-----------------l~r~~G--~~~a~~l~l 164 (257)
T COG1024 106 NGYALGGGLELALAC--DIRIAAEDAKFGLPEVNLGLLPGDGGTQR-----------------LPRLLG--RGRAKELLL 164 (257)
T ss_pred cceEeechhhhhhcC--CeEEecCCcEecCcccccccCCCCcHHHH-----------------HHHhcC--HHHHHHHHH
Confidence 999999999999998 68999999999887766443 221 1111 111111 111222333
Q ss_pred CCcccCHHHHHHcCCeeEEccCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~ 277 (295)
-...++++||+++||||+|+...
T Consensus 165 tg~~~~a~eA~~~Glv~~vv~~~ 187 (257)
T COG1024 165 TGEPISAAEALELGLVDEVVPDA 187 (257)
T ss_pred cCCcCCHHHHHHcCCcCeeeCCH
Confidence 35677999999999999998864
No 116
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.47 E-value=0.0022 Score=63.21 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=89.8
Q ss_pred EEEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCC-CcHHH------------H-------H
Q 022570 105 IVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKL-GYETE------------A-------F 159 (295)
Q Consensus 105 IIfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~-G~V~a------------g-------l 159 (295)
+|.|+-| ++.++...+.+.|..++.++..+- +.|.+.|. .++- |++.+ . .
T Consensus 21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~--VVl~G~G~---~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~ 95 (381)
T PLN02988 21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKL--VILKGHGR---AFCAGGDVAAVVRDIEQGNWRLGANFFSDEY 95 (381)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeE--EEEECCCC---CcccCcCHHHHHhhhcccchhHHHHHHHHHH
Confidence 4666665 667788999999988876544333 34455551 1221 22221 0 1
Q ss_pred HHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 022570 160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 239 (295)
Q Consensus 160 aIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya 239 (295)
.+...|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+-....|..- |..-.. .+-++-.. ...|
T Consensus 96 ~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~mPE~~iGl~P---d~G~s~-~L~rl~G~-~~~~- 167 (381)
T PLN02988 96 MLNYVMATYSKAQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAMPETALGLFP---DVGASY-FLSRLPGF-FGEY- 167 (381)
T ss_pred HHHHHHHHCCCCEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeChhhhcCcCC---CccHHH-HHHHHHHH-HHHH-
Confidence 12235667889999999999999999999998 6899999988764433333211 111000 01111110 0112
Q ss_pred HHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 240 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 240 ~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
++=....++|+||++.||||+++...+
T Consensus 168 ------------l~LTG~~i~a~eA~~~GLv~~vv~~~~ 194 (381)
T PLN02988 168 ------------VGLTGARLDGAEMLACGLATHFVPSTR 194 (381)
T ss_pred ------------HHHcCCCCCHHHHHHcCCceEecCHhH
Confidence 222245679999999999999997643
No 117
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.46 E-value=0.0028 Score=62.98 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=91.4
Q ss_pred EEEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCC-CcHHH------------H----HH--
Q 022570 105 IVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKL-GYETE------------A----FA-- 160 (295)
Q Consensus 105 IIfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~-G~V~a------------g----la-- 160 (295)
+|.|+-| ++.++...+...|..++.++..+- +.|.+.|. .++- |++.+ . ..
T Consensus 49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrv--VVl~G~Gk---aFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~ 123 (401)
T PLN02157 49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGF--VMMKGSGR---AFCAGGDIVSLYHLRKRGSPDAIREFFSSLY 123 (401)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeE--EEEECCCC---CccCCcCHHHHHhhccccchHHHHHHHHHHH
Confidence 5667766 677888999988888876544443 33444441 1111 33321 0 01
Q ss_pred -HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 022570 161 -IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 239 (295)
Q Consensus 161 -Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya 239 (295)
+...|..++.||...+-|.|.+.|.-|.+++ +.|++.++++|-+-....|.. .|..-.+. +-++
T Consensus 124 ~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~c--D~rvate~a~fa~PE~~iGl~---Pd~G~s~~-L~rl--------- 188 (401)
T PLN02157 124 SFIYLLGTYLKPHVAILNGVTMGGGTGVSIPG--TFRVATDRTIFATPETIIGFH---PDAGASFN-LSHL--------- 188 (401)
T ss_pred HHHHHHHhCCCCEEEEEeCeEeehhHHHHHhC--CEEEEeCCCEEEChhhhcCCC---CCccHHHH-HHHh---------
Confidence 2234677789999999999999999999998 689999998876554443331 11110000 1111
Q ss_pred HHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 240 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 240 ~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
.|. .-..++=....|+|+||+++||||+|+...+
T Consensus 189 --~G~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~ 222 (401)
T PLN02157 189 --PGR---LGEYLGLTGLKLSGAEMLACGLATHYIRSEE 222 (401)
T ss_pred --hhH---HHHHHHHcCCcCCHHHHHHcCCceEEeCHhH
Confidence 110 0112222346789999999999999997754
No 118
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.43 E-value=0.0023 Score=67.55 Aligned_cols=145 Identities=12% Similarity=0.174 Sum_probs=86.4
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH-------------HHHHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE-------------TEAFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V-------------~aglaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++...+...|..++.++..+-|.| +...|.. -.|-.+..+ .....++..|..++.||.+.+-
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl-~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVn 104 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVL-VSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIH 104 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 566777888887777775433333332 2333311 122222111 1123466778888999999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCc--eeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSS--TIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS--~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
|.|.+.|.-|.+++ +.|++.+++ +|.+.....|. -|-..- .. +.+..| ...-.+++-
T Consensus 105 G~a~GgG~~LaLac--D~ria~~~~~a~fg~pev~lGl~p~~g~~--------~~--------L~r~vG--~~~A~~lll 164 (699)
T TIGR02440 105 GACLGGGLELALAC--HSRVCSDDDKTVLGLPEVQLGLLPGSGGT--------QR--------LPRLIG--VSTALDMIL 164 (699)
T ss_pred CEeecHHHHHHHhC--CEEEEcCCCCcEEechhhcccCCCCccHH--------HH--------HHHhcC--HHHHHHHHH
Confidence 99999999999998 789999874 44443333332 111100 00 111111 222234444
Q ss_pred CCcccCHHHHHHcCCeeEEccCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~ 277 (295)
....++|+||+++||||+|+..+
T Consensus 165 tG~~~~a~eA~~~GLV~~vv~~~ 187 (699)
T TIGR02440 165 TGKQLRAKQALKLGLVDDVVPQS 187 (699)
T ss_pred cCCcCCHHHHHhCCCCcEecChh
Confidence 55678999999999999999754
No 119
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.39 E-value=0.0026 Score=67.34 Aligned_cols=144 Identities=19% Similarity=0.150 Sum_probs=88.8
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHH---------------HHHHHHHHHhhcCCCEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYET---------------EAFAIYDVMGYVKPPIFTL 175 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~---------------aglaIyd~m~~ik~~V~Tv 175 (295)
++.++...+.+.+..++.++..+- +.|.+.|.. -.|-.+.... ....+++.|..++.||...
T Consensus 31 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 108 (715)
T PRK11730 31 LDRATLASLGEALDALEAQSDLKG--LLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAA 108 (715)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEE--EEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 466777888888877765433333 344555521 1222221111 1123456677788999999
Q ss_pred EeccchhHHHHHHhcccCCCEEeccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 176 ~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
+-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. |-..-. . +.+..| .....+++-
T Consensus 109 v~G~a~GgG~~LAlac--D~ria~~~a~f~~pe~~lGl~p~~g~~~--------~--------L~rlvG--~~~A~~lll 168 (715)
T PRK11730 109 INGYALGGGCECVLAT--DYRVASPDARIGLPETKLGIMPGFGGTV--------R--------LPRLIG--ADNALEWIA 168 (715)
T ss_pred ECCEeehHHHHHHHhC--CEEEEcCCCEEeCchhhcCCCCCchHHH--------H--------HHHhcC--HHHHHHHHH
Confidence 9999999999999998 789999999887654443321 111000 0 111112 223344444
Q ss_pred CCcccCHHHHHHcCCeeEEccCC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~~ 277 (295)
....++|+||+++||||+|+..+
T Consensus 169 tG~~~~A~eA~~~GLv~~vv~~~ 191 (715)
T PRK11730 169 AGKDVRAEDALKVGAVDAVVAPE 191 (715)
T ss_pred cCCcCCHHHHHHCCCCeEecCHH
Confidence 45678999999999999998654
No 120
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.38 E-value=0.0017 Score=66.37 Aligned_cols=151 Identities=19% Similarity=0.251 Sum_probs=92.3
Q ss_pred cceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCC--CCCCCCcHHHHHHHHHHHhhcCCCEEEEEeccchhHHHH
Q 022570 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL 186 (295)
Q Consensus 109 ~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~--~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~gal 186 (295)
+|.++...++++..-+...+. -.-||...+||||..- .-|.-|-+..+-.+.+.+.....|..++++|.+++.|.+
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 466777777887776554443 3689999999999421 111113455666677777777889999999999987665
Q ss_pred HHhcc--cCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHH
Q 022570 187 LLGAG--AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 264 (295)
Q Consensus 187 IlaaG--~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EA 264 (295)
-+++. ..+..++.|++++.+=.|.+... +. +.+++.+..+. .+ .-.+++.+..+ .+.++..|
T Consensus 406 am~~~~~~~d~~~a~p~a~~~v~~pe~a~~-----i~-~~~~l~~~~~~-----~~---~~~~~~~~~~~--~~~~~~~~ 469 (512)
T TIGR01117 406 AMCSKHLGADQVYAWPTAEIAVMGPAGAAN-----II-FRKDIKEAKDP-----AA---TRKQKIAEYRE--EFANPYKA 469 (512)
T ss_pred HhccccCCCCEEEEcCCCeEeecCHHHHHH-----HH-hhhhcccccCH-----HH---HHHHHHHHHHH--hhcCHHHH
Confidence 55431 13678889999887777764321 10 01111110000 00 00122222222 35689999
Q ss_pred HHcCCeeEEccCC
Q 022570 265 VEYGIIDKVLYTE 277 (295)
Q Consensus 265 leyGLID~Ii~~~ 277 (295)
.+.|+||.|++.+
T Consensus 470 a~~g~vD~VI~P~ 482 (512)
T TIGR01117 470 AARGYVDDVIEPK 482 (512)
T ss_pred HhcCCCCeeEChH
Confidence 9999999999874
No 121
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.38 E-value=0.0029 Score=66.98 Aligned_cols=143 Identities=17% Similarity=0.117 Sum_probs=89.7
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH---------------HHHHHHHHHHhhcCCCEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE---------------TEAFAIYDVMGYVKPPIFTL 175 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V---------------~aglaIyd~m~~ik~~V~Tv 175 (295)
++.++...+.+.|..++.++..+- +.|.|.|.. -.|-.+... ..+..+++.|..++.||...
T Consensus 31 l~~~~~~eL~~al~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAa 108 (714)
T TIGR02437 31 FDRATLASLDQALDAIKAQSSLKG--VILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAA 108 (714)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 566788888888888876544443 333454422 122222111 02335777888889999999
Q ss_pred EeccchhHHHHHHhcccCCCEEeccCceeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 176 ~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
+-|.|.+.|.-|.+++ +.|++.++++|.+-....|. -|-..-. ++ .+..|. ..-.+++-
T Consensus 109 i~G~alGGGleLalac--D~ria~~~a~fglPEv~lGl~Pg~Ggt~--------rL--------~rliG~--~~A~~lll 168 (714)
T TIGR02437 109 INGIALGGGCECVLAT--DFRIADDTAKIGLPETKLGIMPGFGGTV--------RL--------PRVIGA--DNALEWIA 168 (714)
T ss_pred ECCeeecHHHHHHHhC--CEEEEeCCCEEecchhhcCCCCCccHHH--------HH--------HHHhCH--HHHHHHHH
Confidence 9999999999999998 78999999988765444332 1111100 01 111121 12233333
Q ss_pred CCcccCHHHHHHcCCeeEEccC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~ 276 (295)
....++|+||+++||||+|+..
T Consensus 169 tG~~~~A~eA~~~GLvd~vv~~ 190 (714)
T TIGR02437 169 SGKENRAEDALKVGAVDAVVTA 190 (714)
T ss_pred cCCcCCHHHHHHCCCCcEeeCh
Confidence 4566899999999999999864
No 122
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=97.35 E-value=0.0012 Score=63.88 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=87.5
Q ss_pred EEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcHH----------------HHHHHH
Q 022570 106 VYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYET----------------EAFAIY 162 (295)
Q Consensus 106 IfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V~----------------aglaIy 162 (295)
|.|+-| ++.++...+...+..++.++..+ .+.|.+.| .. -.|-.+..+. ....++
T Consensus 16 itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vr--vvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (342)
T PRK05617 16 ITLNRPKALNALSLEMIRAIDAALDAWEDDDAVA--AVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLN 93 (342)
T ss_pred EEECCCccccCCCHHHHHHHHHHHHHHhhCCCeE--EEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHH
Confidence 445544 56677788888777776543222 23344444 11 1222221110 011245
Q ss_pred HHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEecccccc---ccchHHHHHHHHHHHHHHHHHHHHHH
Q 022570 163 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI---EGQATDVEIARKEMKNVKAELVKLYA 239 (295)
Q Consensus 163 d~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~---~G~asDi~i~a~ei~~~~~~i~~iya 239 (295)
..|..++.||...+-|.|.+.|.-|.+++ +.|++.++++|.+-....|. .|-..-+.
T Consensus 94 ~~i~~~~kPvIAaVnG~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lGl~P~~g~~~~L~------------------ 153 (342)
T PRK05617 94 ALIARYPKPYIALMDGIVMGGGVGISAHG--SHRIVTERTKMAMPETGIGFFPDVGGTYFLS------------------ 153 (342)
T ss_pred HHHHhCCCCEEEEEcCEEEccHhHHhhhC--CEEEEcCCCEeeCCccccCcCCCccceeEeh------------------
Confidence 56778889999999999999999999988 68999999998765544332 11110010
Q ss_pred HHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 240 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 240 ~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
+.-| ..-.+++=....++|+||+++||||+|+...
T Consensus 154 r~~g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~~ 188 (342)
T PRK05617 154 RAPG---ALGTYLALTGARISAADALYAGLADHFVPSA 188 (342)
T ss_pred hccc---HHHHHHHHcCCCCCHHHHHHcCCcceecCHH
Confidence 0000 0111222234567999999999999998754
No 123
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.28 E-value=0.0042 Score=61.03 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=88.7
Q ss_pred EEEEcce-----eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHHH-------HH-------HHHHH
Q 022570 105 IVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYETE-------AF-------AIYDV 164 (295)
Q Consensus 105 IIfL~g~-----I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~a-------gl-------aIyd~ 164 (295)
+|.|+-| ++.++...+...|..++.++..+- +.|.+.|.. --|-.+..... .. .+...
T Consensus 23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrv--vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (379)
T PLN02874 23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVEL--IIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYH 100 (379)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEE--EEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 4666765 667788888888887775443332 333555511 11111111100 00 11234
Q ss_pred HhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 022570 165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 244 (295)
Q Consensus 165 m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~ 244 (295)
|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|..- +...... +-++ ....+
T Consensus 101 i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~iGl~p---~~g~~~~-L~rl----~g~~a----- 165 (379)
T PLN02874 101 IHTYKKTQVALVHGLVMGGGAGLMVPM--KFRVVTEKTVFATPEASVGFHT---DCGFSYI-LSRL----PGHLG----- 165 (379)
T ss_pred HHhCCCCEEEEecCeEEecHHHHHHhC--CeEEEeCCeEEeccccccCcCC---ChhHHHH-HHhh----hHHHH-----
Confidence 667789999999999999999999998 6899999998776554444321 1110000 0010 00000
Q ss_pred CHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 245 TPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 245 s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
.+++=....++++||+++||||+|+..+
T Consensus 166 -----~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 193 (379)
T PLN02874 166 -----EYLALTGARLNGKEMVACGLATHFVPSE 193 (379)
T ss_pred -----HHHHHcCCcccHHHHHHcCCccEEeCHH
Confidence 1122234567999999999999999754
No 124
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.25 E-value=0.0026 Score=65.45 Aligned_cols=101 Identities=13% Similarity=0.046 Sum_probs=61.2
Q ss_pred HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccC--ceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY 238 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPn--S~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iy 238 (295)
+++.|+.++.||...+-|.|.+.|.-|.+++ +.|++.++ ++|.+ |.....|-..+..-.. . +
T Consensus 111 i~~~i~~~pkPvIAAVnG~a~GGG~~LALac--D~rvAs~~a~a~f~~--pEv~~lGl~P~~gg~~----~--------l 174 (546)
T TIGR03222 111 IEDSSRHSGLKFLAAVNGTCAGGGYELALAC--DEIMLVDDRSSSVSL--PEVPLLGVLPGTGGLT----R--------V 174 (546)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEc--cchhccCcCCccchhh----h--------c
Confidence 4556677889999999999999999999998 68999886 45443 4321111111100000 0 0
Q ss_pred HHHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCC
Q 022570 239 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 239 a~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
............+++=...-++|+||+++||||+|+..+
T Consensus 175 ~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 213 (546)
T TIGR03222 175 TDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPS 213 (546)
T ss_pred cccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChH
Confidence 000011222222332234567999999999999999753
No 125
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.21 E-value=0.0059 Score=64.53 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=86.7
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCC-CC-CCCCCCCcH------H-------HHHHHHHHHhhcCCCEEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TT-KGGEKLGYE------T-------EAFAIYDVMGYVKPPIFTLC 176 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG-~~-~~~~~~G~V------~-------aglaIyd~m~~ik~~V~Tv~ 176 (295)
++.++...+...+..++.++..+- +.|.+.| .. -.|-.+..+ . ....+++.|..++.||...+
T Consensus 31 l~~~~~~~L~~~l~~~~~d~~vr~--vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV 108 (708)
T PRK11154 31 LKAEFAEQVRAILKQLREDKELKG--VVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAI 108 (708)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceE--EEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 566777788887777765432222 2333432 11 122222111 0 11236778888899999999
Q ss_pred eccchhHHHHHHhcccCCCEEeccCc--eeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 022570 177 VGNAWGEAALLLGAGAKGNRAALPSS--TIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADI 253 (295)
Q Consensus 177 ~G~AAS~galIlaaG~kgkR~alPnS--~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~ 253 (295)
-|.|.+.|.-|.+++ +.|++.+++ +|.+.....|. -|-..- ..+.+..| .....+++
T Consensus 109 ~G~a~GgG~~Lalac--D~ria~~~a~a~fg~pe~~lGl~p~~gg~----------------~~L~r~vG--~~~A~~ll 168 (708)
T PRK11154 109 HGACLGGGLELALAC--HYRVCTDDPKTVLGLPEVQLGLLPGSGGT----------------QRLPRLIG--VSTALDMI 168 (708)
T ss_pred CCeeechHHHHHHhC--CEEEEeCCCCceEeCccccCCCCCCccHH----------------hHHHhhcC--HHHHHHHH
Confidence 999999999999998 789999986 45444433332 111100 01111122 23334445
Q ss_pred cCCcccCHHHHHHcCCeeEEccCC
Q 022570 254 RRPKYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 254 ~rd~~msA~EAleyGLID~Ii~~~ 277 (295)
-....++|+||+++||||+|+..+
T Consensus 169 ltG~~i~a~eA~~~GLv~~vv~~~ 192 (708)
T PRK11154 169 LTGKQLRAKQALKLGLVDDVVPHS 192 (708)
T ss_pred HhCCcCCHHHHHHCCCCcEecChH
Confidence 456778999999999999999754
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=96.95 E-value=0.015 Score=60.09 Aligned_cols=147 Identities=13% Similarity=0.098 Sum_probs=87.5
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEE-EcCCCCC--CCCCCC------Cc--HHHH----HHHHHHHhhcCCCEEEEE
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTT--KGGEKL------GY--ETEA----FAIYDVMGYVKPPIFTLC 176 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~Ly-INSPG~~--~~~~~~------G~--V~ag----laIyd~m~~ik~~V~Tv~ 176 (295)
++.++...+...+..++.+| .+|.+. |...|.. --|-.+ +. +... ..+++.|..++.||...+
T Consensus 295 l~~~~~~~L~~a~~~~~~~d--~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNE--LDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCC--CCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 55677777887777776432 344433 3444411 011111 10 1111 125667888899999999
Q ss_pred -eccchhHH-HHHHhcccCCCEEe-------ccCceeEEeccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Q 022570 177 -VGNAWGEA-ALLLGAGAKGNRAA-------LPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHF-GKT 245 (295)
Q Consensus 177 -~G~AAS~g-alIlaaG~kgkR~a-------lPnS~iMIHqp~~g~~-G~asDi~i~a~ei~~~~~~i~~iya~~T-G~s 245 (295)
-|.|.+.| .-|.+++ +.|++ .++++|.+-....|.. +-.. .. .+.+.. |.+
T Consensus 373 ~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg-~~---------------~L~~~v~G~~ 434 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAA--DRSYMLAFPDNNDPEPAITLSELNFGLYPMVNG-LS---------------RLATRFYAEP 434 (546)
T ss_pred CCCeEeHHHHHHHHHhC--ceeeecCCCCCCCCCCEEeCCccccccCCCcCc-HH---------------HHHHHhcCch
Confidence 79999999 8888887 68999 8999987666554432 1110 00 122222 332
Q ss_pred HHHHHHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 246 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 246 ~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
...-.+++-....++|+||+++|||++|.....
T Consensus 435 ~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~ 467 (546)
T TIGR03222 435 APVAAVRDKIGQALDAEEAERLGLVTAAPDDID 467 (546)
T ss_pred hHHHHHHHHhCCCCCHHHHHHcCCcccccCchH
Confidence 222211222346689999999999999977643
No 127
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.94 E-value=0.015 Score=61.84 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=86.5
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcH-------------HHHHHHHHHHhhcCCCEEEEEe
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYE-------------TEAFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V-------------~aglaIyd~m~~ik~~V~Tv~~ 177 (295)
++.++...+.+.|..++.++..+. .+.+.+.|.. -.|-.+..+ .....+++.|..++.||...+-
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~-vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKS-AVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEE-EEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 455677788887777765433222 2334544522 133222111 1123567778888999999999
Q ss_pred ccchhHHHHHHhcccCCCEEeccCc--eeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 022570 178 GNAWGEAALLLGAGAKGNRAALPSS--TIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 254 (295)
Q Consensus 178 G~AAS~galIlaaG~kgkR~alPnS--~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~ 254 (295)
|.|.+.|.-|.+++ +.|++.+++ +|.+.....|. -|--.-. + +.+..| ...-.+++-
T Consensus 117 G~a~GgG~eLALac--D~ria~~~a~a~fglpEv~lGl~Pg~Ggt~--------r--------LprliG--~~~A~~l~l 176 (737)
T TIGR02441 117 GSCLGGGLELALAC--HYRIATKDRKTLLGLPEVMLGLLPGAGGTQ--------R--------LPKLTG--VPAALDMML 176 (737)
T ss_pred CEeecHHHHHHHhC--CEEEEcCCCCCeEecchhhhCCCCCccHhh--------h--------HHHhhC--HHHHHHHHH
Confidence 99999999999998 789999985 45443333332 1110000 0 111112 122233344
Q ss_pred CCcccCHHHHHHcCCeeEEccC
Q 022570 255 RPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 255 rd~~msA~EAleyGLID~Ii~~ 276 (295)
....++|+||+++||||+|+..
T Consensus 177 tG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 177 TGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred cCCcCCHHHHHHCCCCeEecCC
Confidence 4567799999999999999975
No 128
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.88 E-value=0.0041 Score=64.41 Aligned_cols=158 Identities=14% Similarity=0.047 Sum_probs=92.6
Q ss_pred ceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCC--CCCCCCcHHHHHHHHHHHhhcCCCEEEEEeccchhHHHHH
Q 022570 110 MSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL 187 (295)
Q Consensus 110 g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~--~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~galI 187 (295)
|.++.+.+.+...-+...+. -.=||...+|+||..- .-|.-|.+-.+-.+...+...+.|+.|+.+|.+++.|.+-
T Consensus 380 g~l~~~~a~Kaarfi~lc~~--~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ--RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh--cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 45676677776655444443 3579999999999431 1222356677777888888888999999999999988877
Q ss_pred Hhcc--cCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHH
Q 022570 188 LGAG--AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 265 (295)
Q Consensus 188 laaG--~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EAl 265 (295)
+++. ..+..+++|++++-+=.|.+. ..+. +.+|+.+.++...+.-.+....-.+++.+..+ ...++-.|-
T Consensus 458 M~g~~~~~d~~~awp~A~i~vmg~e~a-----a~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~aa 529 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIGVMGGAQA-----AGVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAYE--REANPYYST 529 (569)
T ss_pred hcCcCCCCCEEEECCCCeEEecCHHHH-----HHHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHHH--HhCCHHHHH
Confidence 7643 235567777777655444322 1211 11222221111000000000000122222222 256888999
Q ss_pred HcCCeeEEccCC
Q 022570 266 EYGIIDKVLYTE 277 (295)
Q Consensus 266 eyGLID~Ii~~~ 277 (295)
+.|+||.|+++.
T Consensus 530 ~~~~vD~VIdP~ 541 (569)
T PLN02820 530 ARLWDDGVIDPA 541 (569)
T ss_pred HcCCcCcccCHH
Confidence 999999999874
No 129
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.73 E-value=0.0076 Score=61.18 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=89.7
Q ss_pred cceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCC--CCCCcHHHHHHHHHHHhhcCCCEEEEEeccchhHHHH
Q 022570 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGG--EKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL 186 (295)
Q Consensus 109 ~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~--~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~gal 186 (295)
+|.++.+.+.+...-+...+.. .-||...+|+||..-+- |.-|-+..+-.+.+.+...+.|+.|+.+|.+.+.|.+
T Consensus 307 ~G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~ 384 (493)
T PF01039_consen 307 AGALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYY 384 (493)
T ss_dssp GGEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchh
Confidence 4678888888887766655553 46999999999943211 1125567788999999999999999999999997776
Q ss_pred HHhccc--CCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHH
Q 022570 187 LLGAGA--KGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 264 (295)
Q Consensus 187 IlaaG~--kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~EA 264 (295)
-+++.. .+..+++|++++.+-.|.+... +. +.+++...++.=.+.-+. ..+++.+.. +...++..|
T Consensus 385 am~~~~~~~~~~~Awp~a~~~vm~~e~a~~-----i~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~ 452 (493)
T PF01039_consen 385 AMCGRGYGPDFVFAWPTAEIGVMGPEGAAS-----IL-YRDELEAAEAEGADPEAQ----RAEKIAEYE--DELSSPYRA 452 (493)
T ss_dssp HTTGGGGTTSEEEEETT-EEESS-HHHHHH-----HH-THHHHHHSCHCCHSHHHH----HHHHHHHHH--HHHSSHHHH
T ss_pred hhcccccchhhhhhhhcceeeecChhhhhe-----ee-ehhhhhhhhcccchhHHH----HHHHHHHHH--HhcCCHHHH
Confidence 665542 2457888888887766654321 10 001111110000000000 011111111 233589999
Q ss_pred HHcCCeeEEccCC
Q 022570 265 VEYGIIDKVLYTE 277 (295)
Q Consensus 265 leyGLID~Ii~~~ 277 (295)
.+.|+||.|++..
T Consensus 453 a~~~~~D~ii~p~ 465 (493)
T PF01039_consen 453 ASRGYVDDIIDPA 465 (493)
T ss_dssp HHTTSSSEESSGG
T ss_pred HhcCCCCCccCHH
Confidence 9999999999874
No 130
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=96.53 E-value=0.027 Score=53.80 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=82.6
Q ss_pred EEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHH-------HHHH---HhhcCCCEEEEE
Q 022570 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA-------IYDV---MGYVKPPIFTLC 176 (295)
Q Consensus 107 fL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~agla-------Iyd~---m~~ik~~V~Tv~ 176 (295)
|++|.++...++++...+...... .-|+.+...|+| ....+|.. ++.. +.....|..++.
T Consensus 132 f~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgG--------armqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv 201 (292)
T PRK05654 132 FMGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGG--------ARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVL 201 (292)
T ss_pred cccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCC--------cchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEE
Confidence 567778888888888866554432 578999999999 44444332 1222 223357888999
Q ss_pred eccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 022570 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP 256 (295)
Q Consensus 177 ~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd 256 (295)
+|-+++.++..++... +..++.|++.+.+--|.. + .+-++ +++.+
T Consensus 202 ~gpt~GG~aas~a~~~-D~iia~p~A~ig~aGprv---------------i-----------e~~~~---e~lpe----- 246 (292)
T PRK05654 202 TDPTTGGVSASFAMLG-DIIIAEPKALIGFAGPRV---------------I-----------EQTVR---EKLPE----- 246 (292)
T ss_pred eCCCchHHHHHHHHcC-CEEEEecCcEEEecCHHH---------------H-----------Hhhhh---hhhhh-----
Confidence 9999988777666532 578889999887766621 0 01111 12211
Q ss_pred cccCHHHHHHcCCeeEEccCC
Q 022570 257 KYFSPSEAVEYGIIDKVLYTE 277 (295)
Q Consensus 257 ~~msA~EAleyGLID~Ii~~~ 277 (295)
-+-+++-+.+.|+||.|+.+.
T Consensus 247 ~~~~ae~~~~~G~vD~Vv~~~ 267 (292)
T PRK05654 247 GFQRAEFLLEHGAIDMIVHRR 267 (292)
T ss_pred hhcCHHHHHhCCCCcEEECHH
Confidence 144778888999999999874
No 131
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.44 E-value=0.013 Score=55.98 Aligned_cols=152 Identities=23% Similarity=0.269 Sum_probs=96.1
Q ss_pred CChhhhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCC--CCCCCCcHHHHHHHHH---HHhhc
Q 022570 94 PDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYD---VMGYV 168 (295)
Q Consensus 94 ~Di~s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~--~~~~~G~V~aglaIyd---~m~~i 168 (295)
-|.-++|.++ .|.-.++-...-+.-+...+ .=.-||..+|++||.-. .-|--|. +-+|-. .|-.+
T Consensus 118 ~dtk~~~~rN-----FGm~~PeGyRKAlRlm~~Ae--kF~lPiitfIDT~GAypG~~AEErGQ---~eAIA~nL~em~~L 187 (317)
T COG0825 118 RDTKEKLKRN-----FGMPRPEGYRKALRLMKLAE--KFGLPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARL 187 (317)
T ss_pred ccchhHHHhc-----CCCCCchHHHHHHHHHHHHH--HhCCCEEEEecCCCCCCCcchhhccc---HHHHHHHHHHHhCC
Confidence 4666777776 34445554444444332222 23589999999999221 1122232 334433 45566
Q ss_pred CCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 022570 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQ 248 (295)
Q Consensus 169 k~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~ 248 (295)
+.||.++++|...|.|++-++.| ++.+|+.||++-+-.|.+-.. +-|+.-.+..+
T Consensus 188 kvPiI~iVIGEGgSGGALAi~va--d~V~mle~s~ySVisPEG~As-------ILWkD~~ka~e---------------- 242 (317)
T COG0825 188 KVPIISIVIGEGGSGGALAIGVA--DRVLMLENSTYSVISPEGCAS-------ILWKDASKAKE---------------- 242 (317)
T ss_pred CCCEEEEEecCCCchhhHHhhHH--HHHHHHHhceeeecChhhhhh-------hhhcChhhhHH----------------
Confidence 88999999999999999999998 567999999998888875321 11111111111
Q ss_pred HHHHhcCCcccCHHHHHHcCCeeEEccCCCCCCCcc
Q 022570 249 IEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHG 284 (295)
Q Consensus 249 I~~~~~rd~~msA~EAleyGLID~Ii~~~~~~~~~~ 284 (295)
..+ ..-+||++-+++||||.|+.....-..++
T Consensus 243 AAe----~mkita~dLk~lgiID~II~Ep~ggAhr~ 274 (317)
T COG0825 243 AAE----AMKITAHDLKELGIIDGIIPEPLGGAHRD 274 (317)
T ss_pred HHH----HcCCCHHHHHhCCCcceeccCCCCccccC
Confidence 111 12358889999999999999877655444
No 132
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.43 E-value=0.028 Score=53.57 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=84.2
Q ss_pred EEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHH---HHhhcCCCEEEEEeccchhH
Q 022570 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYD---VMGYVKPPIFTLCVGNAWGE 183 (295)
Q Consensus 107 fL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd---~m~~ik~~V~Tv~~G~AAS~ 183 (295)
|++|.+.....+++...+..... ..-|+.+..+|+|.. --|-+++....-.+.. .+.....|..++..|-+++.
T Consensus 131 f~gGSmg~~~geKi~r~~e~A~~--~~lPlV~l~dSgGaR-mqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG 207 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKALE--DNCPLIIFSASGGAR-MQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGG 207 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHHHH--cCCCEEEEEcCCCcc-cccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchH
Confidence 55778888888888886665443 357999999999932 1111111211111221 22333578999999999888
Q ss_pred HHHHHh-cccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHH
Q 022570 184 AALLLG-AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPS 262 (295)
Q Consensus 184 galIla-aG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~ 262 (295)
++..++ .| +..++.|++.+.+--|.. +.+.+| ++ +. +-+-+|+
T Consensus 208 ~aas~a~~~--D~iia~p~A~ig~aGprV--------------------------ie~ti~---e~----lp-e~~q~ae 251 (285)
T TIGR00515 208 VSASFAMLG--DLNIAEPKALIGFAGPRV--------------------------IEQTVR---EK----LP-EGFQTSE 251 (285)
T ss_pred HHHHHHhCC--CEEEEECCeEEEcCCHHH--------------------------HHHHhc---Cc----cc-hhcCCHH
Confidence 777665 55 678889999888765531 111222 12 22 2355888
Q ss_pred HHHHcCCeeEEccCCC
Q 022570 263 EAVEYGIIDKVLYTEK 278 (295)
Q Consensus 263 EAleyGLID~Ii~~~~ 278 (295)
-+.+.|+||.|+++..
T Consensus 252 ~~~~~G~vD~iv~~~~ 267 (285)
T TIGR00515 252 FLLEHGAIDMIVHRPE 267 (285)
T ss_pred HHHhCCCCcEEECcHH
Confidence 8899999999998743
No 133
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=95.80 E-value=0.061 Score=55.61 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=62.6
Q ss_pred HHHHHhhcCCCEEEEEe-ccchhHH-HHHHhcccCCCEEec-------cCceeEEeccccccc---cchHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCV-GNAWGEA-ALLLGAGAKGNRAAL-------PSSTIMIKQPIGRIE---GQATDVEIARKEMK 228 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~-G~AAS~g-alIlaaG~kgkR~al-------PnS~iMIHqp~~g~~---G~asDi~i~a~ei~ 228 (295)
++..|...+.||...+- |.|.+.| .-|.+++ +.|++. |+++|.+-....|.. |-..-+
T Consensus 361 ~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L-------- 430 (550)
T PRK08184 361 TLKRLDVTSRSLFALIEPGSCFAGTLAELALAA--DRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRL-------- 430 (550)
T ss_pred HHHHHHhCCCCEEEEECCCceehhHHHHHHHHC--ChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHh--------
Confidence 45566777889999996 9999999 7777777 689999 999987665554431 111111
Q ss_pred HHHHHHHHHHHHH-hCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 229 NVKAELVKLYAKH-FGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 229 ~~~~~i~~iya~~-TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
.+. -|.....-..++-....++|+||+++||||+|.....
T Consensus 431 ----------~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~ 471 (550)
T PRK08184 431 ----------ARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDID 471 (550)
T ss_pred ----------HHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHH
Confidence 111 1211111000011246779999999999999998643
No 134
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=94.88 E-value=0.2 Score=46.65 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=82.8
Q ss_pred hcCCCCCeEEEEcCCCCCC--CCCCCCc---HHHHHHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCce
Q 022570 129 YEDVEKPIYLYINSTGTTK--GGEKLGY---ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSST 203 (295)
Q Consensus 129 ~ed~~k~I~LyINSPG~~~--~~~~~G~---V~aglaIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~ 203 (295)
.+.++.+|.+.|++||+-+ -.|.+|- .-..-.-|+.-+....||..+++|.|.|. +||..+--.+.-+++| -
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SG-aFLA~GlqA~rl~AL~--g 136 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSG-AFLAHGLQANRLIALP--G 136 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccH-HHHHHHHHhcchhcCC--C
Confidence 4467899999999999542 3344432 22233345555666789999999999995 5665554446678888 4
Q ss_pred eEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcc--cCHHHHHHcCCeeEEccCCC
Q 022570 204 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKY--FSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 204 iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~--msA~EAleyGLID~Ii~~~~ 278 (295)
.|+|-..- +-.++-|.+|.|++++....--- ...+-=..+|.++++++-..
T Consensus 137 a~i~vM~~------------------------~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~~~~ 189 (234)
T PF06833_consen 137 AMIHVMGK------------------------PSAARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDELWDGDL 189 (234)
T ss_pred CeeecCCh------------------------HHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhcccc
Confidence 45564331 12566788899999888765333 35567788899999988543
No 135
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=93.73 E-value=0.27 Score=50.68 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=86.7
Q ss_pred cceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC--CCCCCCCcHHHHHHHHHHHhhcCCCEEEEEeccchhHHHH
Q 022570 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT--KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL 186 (295)
Q Consensus 109 ~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~--~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~gal 186 (295)
+|.++.+.+.+-...+ .|-. .-.=||.+..|.||+. ..-|.-|-+--|--|.+.+-..+.|..|+.+|.+.+.|.+
T Consensus 337 ~G~l~~~sa~KaArFI-~~cd-~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~ 414 (526)
T COG4799 337 GGVLDIDSADKAARFI-RLCD-AFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYY 414 (526)
T ss_pred ccccchHHHHHHHHHH-Hhhh-ccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceee
Confidence 6777777766554443 3332 2356899999999965 2333335567788888899999999999999999998776
Q ss_pred HHhcccCCCEEeccCceeEEeccccc--ccc--chHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHH
Q 022570 187 LLGAGAKGNRAALPSSTIMIKQPIGR--IEG--QATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPS 262 (295)
Q Consensus 187 IlaaG~kgkR~alPnS~iMIHqp~~g--~~G--~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~ 262 (295)
.+++..- +..+++-+|..- .-| ++..+. +.+++....+. .+..-.-.+.+.+..+ +.+-.+-
T Consensus 415 ~M~~~~~-------~~~~~~AwP~a~iaVMG~egAv~i~-~~k~l~~~~~~-----~~~~~~~~~~~~~eY~-~~~~~p~ 480 (526)
T COG4799 415 VMGGKAL-------GPDFNYAWPTAEIAVMGPEGAVSIL-YRKELAAAERP-----EEREALLRKQLIAEYE-EQFSNPY 480 (526)
T ss_pred eecCccC-------CCceeEecCcceeeecCHHHHHHHH-HHHHhhcccCc-----hhHHHHHHHHHHHHHH-HhccchH
Confidence 6655422 144555555421 222 222221 12333333322 0000000011111111 2333556
Q ss_pred HHHHcCCeeEEccCC
Q 022570 263 EAVEYGIIDKVLYTE 277 (295)
Q Consensus 263 EAleyGLID~Ii~~~ 277 (295)
-|-+.|+||.|++..
T Consensus 481 ~aa~r~~iD~vI~p~ 495 (526)
T COG4799 481 YAAERGYIDAVIDPA 495 (526)
T ss_pred HHHHhCCCCcccCHH
Confidence 688899999999864
No 136
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=92.62 E-value=0.81 Score=43.55 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=65.2
Q ss_pred EEcceeCcchHHHHHHHHHhhhhcC---CCCCeEEEEcCCCCCCCCCCCCcHHHHH-------HHHHHHhhcC--CCEEE
Q 022570 107 YLGMSFVPSVTELILAEFLYLQYED---VEKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIFT 174 (295)
Q Consensus 107 fL~g~I~d~~a~~iiaqLl~L~~ed---~~k~I~LyINSPG~~~~~~~~G~V~agl-------aIyd~m~~ik--~~V~T 174 (295)
|.+|.+......++..-+.....++ ..-|+.+.+.|.| +...++. .|+..+...+ .|+.+
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG--------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~Is 141 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG--------VRLQEANAGLIAIAEIMRAILDARAAVPVIG 141 (274)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC--------cChhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 6678888777778777554433211 2348999999999 5544433 2333333333 69999
Q ss_pred EEecc--chhHHHHHHhcccCCCEEeccCceeEEeccc
Q 022570 175 LCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (295)
Q Consensus 175 v~~G~--AAS~galIlaaG~kgkR~alPnS~iMIHqp~ 210 (295)
++.|- |++.++++.+.+ +..+|.|++++.+--|.
T Consensus 142 vv~Gp~gc~GG~a~~a~l~--D~vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 142 VIGGRVGCFGGMGIAAGLC--SYLIMTEEGRLGLSGPE 177 (274)
T ss_pred EEeCCCCcchHHHHHHhcC--CEEEEeCCcEEeccCHH
Confidence 99999 778888777776 68899999999988774
No 137
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=92.37 E-value=0.62 Score=44.90 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=66.4
Q ss_pred EEcceeCcchHHHHHHHHHhhhhcCC----CCCeEEEEcCCCCCCCCCCCCcHHHHH-------HHHHHHhhcC--CCEE
Q 022570 107 YLGMSFVPSVTELILAEFLYLQYEDV----EKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIF 173 (295)
Q Consensus 107 fL~g~I~d~~a~~iiaqLl~L~~ed~----~k~I~LyINSPG~~~~~~~~G~V~agl-------aIyd~m~~ik--~~V~ 173 (295)
|++|.+......++..-+. +..++. .-|+.+.+.|.| +-..++. .|+..+...+ .|+.
T Consensus 79 f~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSGG--------aRlqEg~~~L~~~a~i~~~~~~ls~~VP~I 149 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALE-LAAEDNRNGIPTAVLLLFETGG--------VRLQEANAGLAAIAEIMRAIVDLRAAVPVI 149 (301)
T ss_pred ccCcCcCHHHHHHHHHHHH-HHHHhCCCCCCCCEEEEecCCC--------cCccchHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6688888877888877544 443433 268999999999 4443322 2343433333 6999
Q ss_pred EEEecc--chhHHHHHHhcccCCCEEeccCceeEEeccc
Q 022570 174 TLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (295)
Q Consensus 174 Tv~~G~--AAS~galIlaaG~kgkR~alPnS~iMIHqp~ 210 (295)
+++.|- |++.++++.+.+ +..+|.+++++.+--|.
T Consensus 150 ~vv~G~~gc~GG~a~~a~l~--D~iIm~~~a~iglaGP~ 186 (301)
T PRK07189 150 GLIGGRVGCFGGMGIAAALC--SYLIVSEEGRLGLSGPE 186 (301)
T ss_pred EEEcCCCCCcHHHHHHHhcC--CEEEEECCcEEeccCHH
Confidence 999998 888888877766 78999999999988774
No 138
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=91.31 E-value=0.11 Score=48.69 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=68.0
Q ss_pred HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 240 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~ 240 (295)
-|..|...++||.+-+=|-|.++|.=|..|+ +-||+...+.|-+.....|. +.|+. .++++-+.+
T Consensus 118 ~~t~ie~CpKPVIaavHg~CiGagvDLiTAc--DIRycsqDAffsvkEVDvgl---aADvG----TL~RlpkvV------ 182 (292)
T KOG1681|consen 118 TFTAIERCPKPVIAAVHGACIGAGVDLITAC--DIRYCSQDAFFSVKEVDVGL---AADVG----TLNRLPKVV------ 182 (292)
T ss_pred HHHHHHhCChhHHHHHHhhhccccccceeec--ceeeecccceeeeeeeeeeh---hhchh----hHhhhhHHh------
Confidence 3455566678887777788888888888888 67999999999888776543 33332 123333221
Q ss_pred HhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCCC
Q 022570 241 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 279 (295)
Q Consensus 241 ~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~~ 279 (295)
| ....+.+..-..+-|+|.||++.|||-+|...+.+
T Consensus 183 --G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ 218 (292)
T KOG1681|consen 183 --G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKEE 218 (292)
T ss_pred --c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHH
Confidence 1 12233333334567899999999999999887654
No 139
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=91.14 E-value=0.57 Score=43.34 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=64.0
Q ss_pred HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEecccccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYA 239 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~-~G~asDi~i~a~ei~~~~~~i~~iya 239 (295)
+.+.|+..+.||..-+-|.|+.+|+-|.+++ +.-.+..++.|..--.-.|. ...+ -+. +.+.--+=+.+|.
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSC--D~vVa~k~SkF~tPG~~vGlFCSTP-GvA-----laRavpRkva~~M 188 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASC--DMVVATKNSKFSTPGAGVGLFCSTP-GVA-----LARAVPRKVAAYM 188 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEee--eEEEEecCccccCCCCceeeEecCc-chh-----HhhhcchhHHHHH
Confidence 3455667778999999999999999988887 45677777777533222221 1111 111 1122222334566
Q ss_pred HHhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccCCC
Q 022570 240 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 278 (295)
Q Consensus 240 ~~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~ 278 (295)
-.||+|. +++||+-.||+.+|+..+.
T Consensus 189 L~Tg~Pi-------------~~eeAl~sGlvskvVp~~e 214 (287)
T KOG1682|consen 189 LMTGLPI-------------TGEEALISGLVSKVVPAEE 214 (287)
T ss_pred HHhCCCC-------------chHHHHHhhhhhhcCCHHH
Confidence 6777765 9999999999999987654
No 140
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=90.77 E-value=2.6 Score=40.59 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=79.9
Q ss_pred EEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCC--CcHHHHHHHHHHHhhcCCCEEEEEeccchhH
Q 022570 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKL--GYETEAFAIYDVMGYVKPPIFTLCVGNAWGE 183 (295)
Q Consensus 107 fL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~--G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~ 183 (295)
|++|.+.....+++...+... .+ ..-|+.+...|.|.. +.|-.. |-.--..+++...+.-..|..++..|-+++.
T Consensus 144 f~gGSmG~v~geKi~ra~e~A-~~-~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG 221 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIEYA-TN-ESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 221 (296)
T ss_pred ccccCcCHHHHHHHHHHHHHH-HH-cCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchH
Confidence 566777777778887755543 33 357899999999822 121110 1000011122222234568899999998888
Q ss_pred HHHHHhc-ccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHH
Q 022570 184 AALLLGA-GAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPS 262 (295)
Q Consensus 184 galIlaa-G~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA~ 262 (295)
++..++. | +..++-|++.+.+--|.. +.+-+|. .+. +-|-+|+
T Consensus 222 ~aas~a~l~--Diiiae~~A~IgfAGPrV--------------------------Ie~t~ge-------~lp-e~fq~ae 265 (296)
T CHL00174 222 VTASFGMLG--DIIIAEPNAYIAFAGKRV--------------------------IEQTLNK-------TVP-EGSQAAE 265 (296)
T ss_pred HHHHHHHcc--cEEEEeCCeEEEeeCHHH--------------------------HHHhcCC-------cCC-cccccHH
Confidence 8877765 7 567788888877766641 1111221 122 2244888
Q ss_pred HHHHcCCeeEEccC
Q 022570 263 EAVEYGIIDKVLYT 276 (295)
Q Consensus 263 EAleyGLID~Ii~~ 276 (295)
-.++.|+||.|+..
T Consensus 266 ~l~~~G~vD~iV~r 279 (296)
T CHL00174 266 YLFDKGLFDLIVPR 279 (296)
T ss_pred HHHhCcCceEEEcH
Confidence 88999999999875
No 141
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=80.38 E-value=10 Score=39.61 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=62.5
Q ss_pred EEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCC-CCCCcHHH-HHHHHHHHhhc--CCCEEEEEeccch
Q 022570 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGG-EKLGYETE-AFAIYDVMGYV--KPPIFTLCVGNAW 181 (295)
Q Consensus 107 fL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~-~~~G~V~a-glaIyd~m~~i--k~~V~Tv~~G~AA 181 (295)
+++|.+.....++++.-+. +..+ ..-||...++|+|.. ... +..+.... |...++..+.+ ..|..++++|.|+
T Consensus 140 v~GGs~g~~~~~Ki~r~~e-lA~~-~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~ 217 (569)
T PLN02820 140 VKGGTYYPITVKKHLRAQE-IAAQ-CRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCT 217 (569)
T ss_pred ccCCCCCHHHHHHHHHHHH-HHHH-cCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 3466677777788877544 3333 357999999999932 111 11111111 22233333333 4699999999999
Q ss_pred hHHHHHHhcccCCCEEec-cCceeEEeccc
Q 022570 182 GEAALLLGAGAKGNRAAL-PSSTIMIKQPI 210 (295)
Q Consensus 182 S~galIlaaG~kgkR~al-PnS~iMIHqp~ 210 (295)
+.|+++.+.. +..++. +++++.+--|.
T Consensus 218 gGgAy~~a~~--D~vim~~~~a~i~~aGP~ 245 (569)
T PLN02820 218 AGGAYVPAMA--DESVIVKGNGTIFLAGPP 245 (569)
T ss_pred hHHHHHHHhC--CceEEecCCcEEEecCHH
Confidence 9999988766 455655 57888887773
No 142
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=74.79 E-value=18 Score=37.33 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=64.1
Q ss_pred EEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCC-CCCCCCCcHHH-HHHHHHHHhh-cCCCEEEEEeccchhH
Q 022570 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYETE-AFAIYDVMGY-VKPPIFTLCVGNAWGE 183 (295)
Q Consensus 107 fL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~-~~~~~~G~V~a-glaIyd~m~~-ik~~V~Tv~~G~AAS~ 183 (295)
|++|.+.....++++.-+. +..+. .-|+..++.|.|.. ..+... ... +...+...+. -..|..++++|-|+..
T Consensus 93 ~~gGS~g~~~~~K~~r~~e-~A~~~-~lPlV~l~dSgGarm~eg~~~--l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG 168 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMD-LAMKM-GAPVVGLNDSGGARIQEAVDA--LKGYGDIFYRNTIASGVVPQISAIMGPCAGG 168 (512)
T ss_pred ccccCCCHHHHHHHHHHHH-HHHHc-CCCEEEEecCCCCCccccchh--hhhHHHHHHHHHHHcCCCcEEEEEecCCCcH
Confidence 6778888888888877544 33333 57899999999932 111110 001 1122222222 2468899999999999
Q ss_pred HHHHHhcccCCCEEeccC-ceeEEeccc
Q 022570 184 AALLLGAGAKGNRAALPS-STIMIKQPI 210 (295)
Q Consensus 184 galIlaaG~kgkR~alPn-S~iMIHqp~ 210 (295)
+++..+.+ +..++.|+ +.+.+--|.
T Consensus 169 ~a~~~al~--D~vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 169 AVYSPALT--DFIYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHHHHhc--CceEEeccceEEEecChH
Confidence 99988877 68999997 567777664
No 143
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=71.88 E-value=2.5 Score=39.48 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=63.5
Q ss_pred HHHHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEecccccc-c-cc-hHHHHHHHHHHHHHHHHHH
Q 022570 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-E-GQ-ATDVEIARKEMKNVKAELV 235 (295)
Q Consensus 159 laIyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~-~-G~-asDi~i~a~ei~~~~~~i~ 235 (295)
+.+-..|+.+++||...+-|.|.+.|-.|-.-+ +--++..|++|-=-.|..|+ - |- +.-+
T Consensus 106 LdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvC--DLTiAa~nA~FgQTgp~VGSFD~G~Gs~yl--------------- 168 (282)
T COG0447 106 LDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVC--DLTIAADNAIFGQTGPKVGSFDGGYGSSYL--------------- 168 (282)
T ss_pred hhHHHHHHhCCcceEEEEeeEeccCccEEEEEe--eeeeehhcchhcCCCCCcccccCcccHHHH---------------
Confidence 445556788889999999999999887776666 34577788888766676443 2 21 1111
Q ss_pred HHHHHHhCCCH-HHHHHHhcCCcccCHHHHHHcCCeeEEccCCCCCC
Q 022570 236 KLYAKHFGKTP-EQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPE 281 (295)
Q Consensus 236 ~iya~~TG~s~-e~I~~~~~rd~~msA~EAleyGLID~Ii~~~~~~~ 281 (295)
++.-|+.. .+|.= + -+..+|+||++.|+|..|+...+..+
T Consensus 169 ---ar~VGqKkArEIwf-L--cR~Y~A~eal~MGlVN~Vvp~~~LE~ 209 (282)
T COG0447 169 ---ARIVGQKKAREIWF-L--CRQYDAEEALDMGLVNTVVPHADLEK 209 (282)
T ss_pred ---HHHhhhhhhHHhhh-h--hhhccHHHHHhcCceeeeccHHHHHH
Confidence 11122111 11111 1 12349999999999999987765444
No 144
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=69.69 E-value=15 Score=28.70 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=43.5
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEE------EEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEec
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL------YINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~L------yINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G 178 (295)
++.+.|+++...++.+..+++..-.++..+.+.| ||+|.| +..-..++..++.. .+..+..|
T Consensus 13 v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg----------~~~l~~~~~~~~~~--g~~l~l~g 80 (109)
T cd07041 13 VLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAV----------ARHLLRLARALRLL--GARTILTG 80 (109)
T ss_pred EEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHH----------HHHHHHHHHHHHHc--CCeEEEEe
Confidence 5679999999999999888765433233444544 233333 22333344444443 34455566
Q ss_pred cchhHHHHHHhcc
Q 022570 179 NAWGEAALLLGAG 191 (295)
Q Consensus 179 ~AAS~galIlaaG 191 (295)
.-....-.+-.+|
T Consensus 81 ~~~~v~~~l~~~g 93 (109)
T cd07041 81 IRPEVAQTLVELG 93 (109)
T ss_pred CCHHHHHHHHHhC
Confidence 6666666666665
No 145
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=69.58 E-value=16 Score=34.32 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=83.0
Q ss_pred HHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCC-----------C-cHHHHHHHHHHHhhcCCCEEEEEeccchhHHH
Q 022570 118 ELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKL-----------G-YETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA 185 (295)
Q Consensus 118 ~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~-----------G-~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~ga 185 (295)
+.+...|..|.++++..-+.|.=-+||.---|-.+ | .|..-..+++.+..++.||..-..|.|-+.|-
T Consensus 61 ~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGL 140 (291)
T KOG1679|consen 61 KQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGL 140 (291)
T ss_pred HHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccch
Confidence 34444445566655444444444467722112111 1 23444567788888889999999999999888
Q ss_pred HHHhcccCCCEEeccCceeEEecccc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCH
Q 022570 186 LLLGAGAKGNRAALPSSTIMIKQPIG----RIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSP 261 (295)
Q Consensus 186 lIlaaG~kgkR~alPnS~iMIHqp~~----g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~~~~rd~~msA 261 (295)
=+..++ +-|.+..++.+.+-.-.. |..|.- ++-+ ++ ....-++++-..+.+++
T Consensus 141 ElALAC--DiRva~s~akmGLvET~laiiPGaGGtQ-----------RLpR----~v------g~alaKELIftarvl~g 197 (291)
T KOG1679|consen 141 ELALAC--DIRVAASSAKMGLVETKLAIIPGAGGTQ-----------RLPR----IV------GVALAKELIFTARVLNG 197 (291)
T ss_pred hhhhhc--cceehhhhccccccccceeeecCCCccc-----------hhHH----HH------hHHHHHhHhhhheeccc
Confidence 888888 679998888876654332 223321 1111 10 11112233334577899
Q ss_pred HHHHHcCCeeEEccCC
Q 022570 262 SEAVEYGIIDKVLYTE 277 (295)
Q Consensus 262 ~EAleyGLID~Ii~~~ 277 (295)
.||.+.|||.+|++..
T Consensus 198 ~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 198 AEAAKLGLVNHVVEQN 213 (291)
T ss_pred hhHHhcchHHHHHhcC
Confidence 9999999999999875
No 146
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=68.86 E-value=27 Score=27.09 Aligned_cols=75 Identities=15% Similarity=0.048 Sum_probs=47.7
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEE------EEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEec
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL------YINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~L------yINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G 178 (295)
++.+.|+++...++.+..++..+-...+.+.+.| ||+|.| +..-..++..++... +..+..|
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssg----------i~~L~~~~~~~~~~g--~~l~l~~ 78 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSG----------LGVILGRYKKIKNEG--GEVIVCN 78 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchH----------HHHHHHHHHHHHHcC--CEEEEEe
Confidence 5779999999999999999876533233456666 566666 333344555555543 4455556
Q ss_pred cchhHHHHHHhcc
Q 022570 179 NAWGEAALLLGAG 191 (295)
Q Consensus 179 ~AAS~galIlaaG 191 (295)
.....--++-.+|
T Consensus 79 ~~~~v~~~l~~~g 91 (106)
T TIGR02886 79 VSPAVKRLFELSG 91 (106)
T ss_pred CCHHHHHHHHHhC
Confidence 6655555665555
No 147
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=68.00 E-value=26 Score=35.93 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=58.7
Q ss_pred EEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCEEEEEeccchhHH
Q 022570 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGE--KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184 (295)
Q Consensus 107 fL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~--~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AAS~g 184 (295)
|.+|-+..+++.+...-+.+-.+ ..=|+.+..|+||....+. .-|=.-.|--+.+.....+.|..|+..|-+.+ |
T Consensus 360 f~~G~L~s~sa~KgarfIe~c~q--~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G 436 (536)
T KOG0540|consen 360 FAGGVLFSESAVKGARFIELCDQ--RNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-G 436 (536)
T ss_pred hcccccchhhhhhhHHHHHHHHh--cCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-C
Confidence 33466666777666664444432 3578999999999443222 22334455556667777778888999998888 5
Q ss_pred HHHHhcc--cCCCEEeccCceeE
Q 022570 185 ALLLGAG--AKGNRAALPSSTIM 205 (295)
Q Consensus 185 alIlaaG--~kgkR~alPnS~iM 205 (295)
.+=+++- ..+.-|+.||++|-
T Consensus 437 ~y~m~sr~~~gd~~yawP~A~Ia 459 (536)
T KOG0540|consen 437 NYAMCSRGYSGDINYAWPNARIA 459 (536)
T ss_pred cccccccccCCceeEEcccceee
Confidence 5553321 01344666666654
No 148
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=64.31 E-value=14 Score=35.09 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=58.3
Q ss_pred HHHHHhhcCCCEEEEEeccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 022570 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 240 (295)
Q Consensus 161 Iyd~m~~ik~~V~Tv~~G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~ 240 (295)
..++.-..+.|+.+.+-|=|-+.|+.|+.-. +..++. -...+|-|.... ||..|--..+. +-+
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lc--D~V~A~--Dka~F~TPfa~l-Gq~PEG~Ss~t------------~p~ 161 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLC--DYVWAS--DKAWFQTPFAKL-GQSPEGCSSVT------------LPK 161 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhh--heEEec--cceEEeccchhc-CCCCCcceeee------------ehH
Confidence 4567777788999999999999999999888 555665 455567776421 11111000000 000
Q ss_pred HhCCCHHHHHHHhcCCcccCHHHHHHcCCeeEEccC
Q 022570 241 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 241 ~TG~s~e~I~~~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
. ...+.-.+++==..-|+|+||.++|||++|...
T Consensus 162 i--mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 162 I--MGSASANEMLLFGEKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred h--hchhhHHHHHHhCCcccHHHHHhcCchhhhcCh
Confidence 0 011111122212345699999999999999876
No 149
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=60.77 E-value=41 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.092 Sum_probs=24.1
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEE
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL 138 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~L 138 (295)
++.+.|+++...++.+..++..+-.+...+.+.|
T Consensus 11 ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vil 44 (100)
T cd06844 11 VVRLEGELDHHSVEQFKEELLHNITNVAGKTIVI 44 (100)
T ss_pred EEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 6789999999999999998864333333344444
No 150
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=55.16 E-value=20 Score=36.64 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=61.4
Q ss_pred EEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCC--cHHHHH-------HHHHHHh-hc-CCCEEEE
Q 022570 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLG--YETEAF-------AIYDVMG-YV-KPPIFTL 175 (295)
Q Consensus 107 fL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G--~V~agl-------aIyd~m~-~i-k~~V~Tv 175 (295)
|++|.+.+...+++...+.. ..+. .-|+..+++|.| + ...+++ .++..+. .. ..|+.++
T Consensus 68 ~~gGs~g~~~~~Ki~ra~~~-A~~~-~~P~v~l~dsgG--------a~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~v 137 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAIEL-ALEN-GLPLVYLVDSGG--------AFLRMQEGVESLMGMGRIFRAIARLSGGIPQISV 137 (493)
T ss_dssp SGGGTBSHHHHHHHHHHHHH-HHHH-TEEEEEEEEESS--------BCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEE
T ss_pred eecCCCCcccceeeehHHHH-HHHc-CCCcEEeccccc--------cccccchhhhhhhhhHHHHHHHHHHhcCCCeEEE
Confidence 45667777777887775443 3333 567888889999 4 222221 2222222 22 4689999
Q ss_pred EeccchhHHHHHHhcccCCCEEeccC-ceeEEeccc
Q 022570 176 CVGNAWGEAALLLGAGAKGNRAALPS-STIMIKQPI 210 (295)
Q Consensus 176 ~~G~AAS~galIlaaG~kgkR~alPn-S~iMIHqp~ 210 (295)
..|-|.+.++++.+.+ +..++.+. +++.+.-|.
T Consensus 138 v~G~~~Gg~A~~~~~~--d~~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 138 VTGPCTGGGAYLAALS--DFVIMVKGTARIFLAGPR 171 (493)
T ss_dssp EESEEEGGGGHHHHHS--SEEEEETTTCEEESSTHH
T ss_pred Eccccccchhhccccc--CccccCccceEEEecccc
Confidence 9999999999988887 56788887 999888775
No 151
>PLN02522 ATP citrate (pro-S)-lyase
Probab=45.46 E-value=2.2e+02 Score=30.36 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=45.0
Q ss_pred cEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhh--cCCCEEEEEeccch
Q 022570 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY--VKPPIFTLCVGNAW 181 (295)
Q Consensus 104 RIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~--ik~~V~Tv~~G~AA 181 (295)
.+|-+|+..+..+ .+..-|.+++.++.++-|.||+-=.| .++....+.++. .++||..++.|..+
T Consensus 196 ~~VsiGnd~~~g~--~~~D~L~~~~~Dp~Tk~IvlygEiGg-----------~~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 196 EGIAIGGDVFPGS--TLSDHVLRFNNIPQIKMIVVLGELGG-----------RDEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEEeCCCCCCCC--CHHHHHHHHhcCCCCCEEEEEEecCc-----------hhHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 4678888665332 34556777888888999999987434 233444455554 56899999999876
No 152
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=44.78 E-value=1.2e+02 Score=24.14 Aligned_cols=79 Identities=14% Similarity=0.005 Sum_probs=43.9
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCc--HHHHHHHHHHHhhcCCCEEEEEeccchh
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY--ETEAFAIYDVMGYVKPPIFTLCVGNAWG 182 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~--V~aglaIyd~m~~ik~~V~Tv~~G~AAS 182 (295)
++.+.|.+|...+..+...+...-..+..+ .+.||..|-.+ +++ +..=...+...+... +..+..|.--+
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~--~ivIDls~v~~----~dS~gl~~L~~~~~~~~~~g--~~~~l~~i~p~ 87 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAASGAR--GLVIDLSGVDF----MDSAGLGVLVALLKSARLRG--VELVLVGIQPE 87 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcCCCc--EEEEECCCCce----echHHHHHHHHHHHHHHhcC--CeEEEEeCCHH
Confidence 577999999999999999888433333222 36666666221 111 111123344444444 34444555555
Q ss_pred HHHHHHhcc
Q 022570 183 EAALLLGAG 191 (295)
Q Consensus 183 ~galIlaaG 191 (295)
.+-.+-..|
T Consensus 88 v~~~~~~~g 96 (117)
T COG1366 88 VARTLELTG 96 (117)
T ss_pred HHHHHHHhC
Confidence 555555555
No 153
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=41.22 E-value=1.6e+02 Score=22.50 Aligned_cols=75 Identities=21% Similarity=0.149 Sum_probs=42.9
Q ss_pred EEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEE------EEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEec
Q 022570 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL------YINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 105 IIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~L------yINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G 178 (295)
+|.+.|+++...+..+-..+..+......+.+.+ +|+|.| ...=..++..++.. .+..+..|
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssg----------l~~L~~~~~~~~~~--~~~~~l~~ 82 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSG----------LGVLLGRYKQVRRV--GGQLVLVS 82 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEcccc----------HHHHHHHHHHHHhc--CCEEEEEe
Confidence 5679999999988888888876654323444555 344444 11222333344432 44556666
Q ss_pred cchhHHHHHHhcc
Q 022570 179 NAWGEAALLLGAG 191 (295)
Q Consensus 179 ~AAS~galIlaaG 191 (295)
.-.....++=..|
T Consensus 83 ~~~~~~~~l~~~~ 95 (108)
T TIGR00377 83 VSPRVARLLDITG 95 (108)
T ss_pred CCHHHHHHHHHhC
Confidence 6655555555554
No 154
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=39.60 E-value=2.3e+02 Score=25.49 Aligned_cols=87 Identities=25% Similarity=0.300 Sum_probs=53.8
Q ss_pred CChhhhhccCcEEEEc-ceeCcchHHHHHHHHHhhhhcCCCCCeEEEE-cCCCCCCCCCCCCcHHHHHHHHHHHhh----
Q 022570 94 PDLASYLYKNRIVYLG-MSFVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTKGGEKLGYETEAFAIYDVMGY---- 167 (295)
Q Consensus 94 ~Di~s~Ll~eRIIfL~-g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyI-NSPG~~~~~~~~G~V~aglaIyd~m~~---- 167 (295)
.|-|++++.. |-||. ...+....+.+.+.|..+...+ .+.+.|=+ +.+| |++..+..|...+-.
T Consensus 40 ~~~~~~~~~~-igYi~i~sf~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~G--------G~~~~~~~i~~~f~~~~~~ 109 (211)
T cd07560 40 LDPYSRYLTP-IGYIRITSFSENTAEELKKALKELKKQG-MKGLILDLRNNPG--------GLLDEAVEIADLFLPGGPI 109 (211)
T ss_pred CCCcceeeCc-eEEEEEcccCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCC--------CCHHHHHHHHHHhcCCCeE
Confidence 4556666555 43432 1234455677777676666543 56666666 5568 898888877765532
Q ss_pred --------------------cCCCEEEEEeccchhHHHHHHhc
Q 022570 168 --------------------VKPPIFTLCVGNAWGEAALLLGA 190 (295)
Q Consensus 168 --------------------ik~~V~Tv~~G~AAS~galIlaa 190 (295)
...||..++-+..+|+|-++..+
T Consensus 110 ~~~~~~~g~~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~ 152 (211)
T cd07560 110 VSTKGRNGKREAYASDDGGLYDGPLVVLVNGGSASASEIVAGA 152 (211)
T ss_pred EEEEecCCceEEEecCCCccCCCCEEEEeCCCcccHHHHHHHH
Confidence 23467777777777777766555
No 155
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=38.85 E-value=2.3e+02 Score=24.95 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHhhhhcCCCCCeEEEE-cCCCCCCCCCCCCcHHHHHHHHHHHhh-------------------------
Q 022570 114 PSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTKGGEKLGYETEAFAIYDVMGY------------------------- 167 (295)
Q Consensus 114 d~~a~~iiaqLl~L~~ed~~k~I~LyI-NSPG~~~~~~~~G~V~aglaIyd~m~~------------------------- 167 (295)
+...+.+.+.+..++. +.+.+.|=+ +.+| |++..+..+.+.+-.
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~G--------G~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (224)
T cd06567 72 ESTAEELREALAELKK--GVKGLILDLRNNPG--------GLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGS 141 (224)
T ss_pred cchHHHHHHHHHHHHc--CCCEEEEEcCCCCC--------ccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCc
Confidence 4555666666666654 467777777 6678 999888888887753
Q ss_pred -cCCCEEEEEeccchhHHHHHHhc
Q 022570 168 -VKPPIFTLCVGNAWGEAALLLGA 190 (295)
Q Consensus 168 -ik~~V~Tv~~G~AAS~galIlaa 190 (295)
...||..++-+..+|+|-++..+
T Consensus 142 ~~~~pv~vL~~~~taSaaE~~a~~ 165 (224)
T cd06567 142 LYDGPLVVLVNEGSASASEIFAGA 165 (224)
T ss_pred ccCCCEEEEECCCCccHHHHHHHH
Confidence 12478888888888888776665
No 156
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=33.88 E-value=1.2e+02 Score=29.28 Aligned_cols=65 Identities=17% Similarity=0.095 Sum_probs=49.4
Q ss_pred cEEEEcce--eCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEeccch
Q 022570 104 RIVYLGMS--FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAW 181 (295)
Q Consensus 104 RIIfL~g~--I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~AA 181 (295)
.+|-++.. .+- .+..-|.||..++..+-|.||+-+-| -.+..+..+.+..+. ++||..+..|..+
T Consensus 179 ~~VS~Gn~~~adv----~~~d~L~yl~~Dp~T~~I~ly~E~~G--------~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 179 TCVGIGGDPFNGT----NFVDCLEKFVKDPQTEGIILIGEIGG--------TAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEEeCCCCCCCC----CHHHHHHHHhhCCCCcEEEEEeccCC--------chHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 46777777 443 34555678888888999999999877 566778887777654 7899999998875
No 157
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=33.37 E-value=2.7e+02 Score=27.01 Aligned_cols=120 Identities=22% Similarity=0.226 Sum_probs=72.7
Q ss_pred EEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHH----------HHHHHHhhcCCCEEEEE
Q 022570 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAF----------AIYDVMGYVKPPIFTLC 176 (295)
Q Consensus 107 fL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~agl----------aIyd~m~~ik~~V~Tv~ 176 (295)
|++|.+..-+.+.|+..+.+.-. + .-|+.++--|.| --.-+|+ +-...++..+-|..+|-
T Consensus 133 FmgGSmGsVvGeki~ra~E~A~e-~-k~P~v~f~aSGG--------ARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVL 202 (294)
T COG0777 133 FMGGSMGSVVGEKITRAIERAIE-D-KLPLVLFSASGG--------ARMQEGILSLMQMAKTSAALKRLSEAGLPYISVL 202 (294)
T ss_pred ccccchhHHHHHHHHHHHHHHHH-h-CCCEEEEecCcc--------hhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 67777777788899887765443 2 478888888877 3444432 11223333344655554
Q ss_pred e-----ccchhHHHHHHhcccCCCEEeccCceeEEeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 022570 177 V-----GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 251 (295)
Q Consensus 177 ~-----G~AAS~galIlaaG~kgkR~alPnS~iMIHqp~~g~~G~asDi~i~a~ei~~~~~~i~~iya~~TG~s~e~I~~ 251 (295)
. |..||-| +.| +--++-|.+.|.+.-|..- + ..|.+
T Consensus 203 t~PTtGGVsASfA----~lG--Di~iAEP~AlIGFAGpRVI--------E-------------------------QTire 243 (294)
T COG0777 203 TDPTTGGVSASFA----MLG--DIIIAEPGALIGFAGPRVI--------E-------------------------QTIRE 243 (294)
T ss_pred cCCCccchhHhHH----hcc--CeeecCcccccccCcchhh--------h-------------------------hhhcc
Confidence 3 5666644 345 4456778888877666521 0 11112
Q ss_pred HhcCCcccCHHHHHHcCCeeEEccC
Q 022570 252 DIRRPKYFSPSEAVEYGIIDKVLYT 276 (295)
Q Consensus 252 ~~~rd~~msA~EAleyGLID~Ii~~ 276 (295)
.+.. -|-++|--++.|+||.|+..
T Consensus 244 ~LPe-gfQ~aEfLlehG~iD~iv~R 267 (294)
T COG0777 244 KLPE-GFQTAEFLLEHGMIDMIVHR 267 (294)
T ss_pred cCCc-chhhHHHHHHcCCceeeecH
Confidence 2222 25588888999999999987
No 158
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=30.92 E-value=2.3e+02 Score=27.02 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=49.6
Q ss_pred eCcchHHHHHHHHHhhhhcCCCCCeEEEE-cCCCCCCCCCCCCcHHHHHHHHHHHhh-----------------------
Q 022570 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTKGGEKLGYETEAFAIYDVMGY----------------------- 167 (295)
Q Consensus 112 I~d~~a~~iiaqLl~L~~ed~~k~I~LyI-NSPG~~~~~~~~G~V~aglaIyd~m~~----------------------- 167 (295)
.+....+.+.+.|..|+.. +.+.+.|=+ +.+| |++..+..+...+-.
T Consensus 161 f~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~G--------G~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~ 231 (334)
T TIGR00225 161 FSEHTTEDVKKALDKLEKK-NAKGYILDLRGNPG--------GLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQ 231 (334)
T ss_pred cccchHHHHHHHHHHHHhc-cCceEEEEcCCCCC--------CCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCc
Confidence 3555677888887777654 367777777 6789 999998888886521
Q ss_pred -cCCCEEEEEeccchhHHHHHHhc
Q 022570 168 -VKPPIFTLCVGNAWGEAALLLGA 190 (295)
Q Consensus 168 -ik~~V~Tv~~G~AAS~galIlaa 190 (295)
...||..++-+..||+|-++..+
T Consensus 232 ~~~~pv~vLvn~~TaSaaE~~a~~ 255 (334)
T TIGR00225 232 PYNLPLVVLVNRGSASASEIFAGA 255 (334)
T ss_pred cCCCCEEEEECCCCCcHHHHHHHH
Confidence 23467777777888877776665
No 159
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=29.60 E-value=32 Score=23.50 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.3
Q ss_pred cCCcccCHHHHHHcCCeeE
Q 022570 254 RRPKYFSPSEAVEYGIIDK 272 (295)
Q Consensus 254 ~rd~~msA~EAleyGLID~ 272 (295)
.....|+-+||++.||||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 3467789999999999996
No 160
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=28.59 E-value=93 Score=23.25 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCC-CHHHHHHHhcCCcccCHHHHHHc
Q 022570 233 ELVKLYAKHFGK-TPEQIEADIRRPKYFSPSEAVEY 267 (295)
Q Consensus 233 ~i~~iya~~TG~-s~e~I~~~~~rd~~msA~EAley 267 (295)
++++-+.+.+|. +.++|...+. +..|+|.||.+-
T Consensus 7 k~VQ~iKEiv~~hse~eIya~L~-ecnMDpnea~qr 41 (60)
T PF06972_consen 7 KTVQSIKEIVGCHSEEEIYAMLK-ECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH-HhCCCHHHHHHH
Confidence 344556666776 8888888665 688999998864
No 161
>smart00250 PLEC Plectin repeat.
Probab=27.78 E-value=36 Score=22.33 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.8
Q ss_pred CCcccCHHHHHHcCCeeEE
Q 022570 255 RPKYFSPSEAVEYGIIDKV 273 (295)
Q Consensus 255 rd~~msA~EAleyGLID~I 273 (295)
...-+|-.||++-||||.-
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4566799999999999964
No 162
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=25.91 E-value=1.3e+02 Score=24.00 Aligned_cols=69 Identities=25% Similarity=0.397 Sum_probs=29.5
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcC---CCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEec
Q 022570 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINS---TGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 102 ~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINS---PG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G 178 (295)
+++..-+.+.=.-+..-.++.+.|.++ +.+.+++|||+ |. --|.+| .+|+....-..=|.-||..
T Consensus 16 k~~k~kI~~~~~f~~vi~fLrk~Lk~~---~~~slFlYin~sFaPs---pDe~vg------~L~~~f~~~~~Liv~Ys~t 83 (87)
T PF04110_consen 16 KQKKFKISASQTFATVIAFLRKKLKLK---PSDSLFLYINNSFAPS---PDETVG------DLYRCFGTNGELIVSYSKT 83 (87)
T ss_dssp S--EEEEETTSBTHHHHHHHHHHCT-------SS-EEEEEEEE------TTSBHH------HHHHHH-BTTBEEEEEESS
T ss_pred cCcEEEECCCCchHHHHHHHHHHhCCc---cCCeEEEEEcCccCCC---chhHHH------HHHHHhCCCCEEEEEEecc
Confidence 444444443322233344444444443 46889999995 55 112223 4555555444456677777
Q ss_pred cchh
Q 022570 179 NAWG 182 (295)
Q Consensus 179 ~AAS 182 (295)
.|++
T Consensus 84 ~A~G 87 (87)
T PF04110_consen 84 PAWG 87 (87)
T ss_dssp S---
T ss_pred cccC
Confidence 7653
No 163
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=25.25 E-value=2.3e+02 Score=24.06 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=37.4
Q ss_pred hhhhc--cCcEEEEcceeCcch--HHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHh
Q 022570 97 ASYLY--KNRIVYLGMSFVPSV--TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG 166 (295)
Q Consensus 97 ~s~Ll--~eRIIfL~g~I~d~~--a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~ 166 (295)
+.+.+ ...+-|..=||.|+. ....+.+++.+=..- .+.-.|.+||.... |-.+-++.||+.|+
T Consensus 83 ~e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~------GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 83 TEEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGR------GRTTTFMVMYDLIR 149 (149)
T ss_dssp -HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSS------HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCC------CHHHHHHHHHHHhC
Confidence 55555 356888888998865 244444444332222 45788888988733 55899999999885
No 164
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=25.18 E-value=1.7e+02 Score=24.76 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=34.2
Q ss_pred cEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcC--CCEEEEEecc
Q 022570 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGN 179 (295)
Q Consensus 104 RIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik--~~V~Tv~~G~ 179 (295)
.+|-++.+.+-. +..-|.||..++..+-|.+||-+-+ .+....+.++... +||..+-.|.
T Consensus 30 ~~vs~Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~------------d~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 30 YVVSVGNEADVD----FADLLEYLAEDPDTRVIVLYLEGIG------------DGRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp EEEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-------------HHHHHHHHHHHCCCS-EEEEE---
T ss_pred EEEEeCccccCC----HHHHHHHHhcCCCCCEEEEEccCCC------------CHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 467777766432 3344557777778999999998766 4677777777776 8998888876
No 165
>PRK11186 carboxy-terminal protease; Provisional
Probab=24.36 E-value=2.9e+02 Score=29.72 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=51.6
Q ss_pred cchHHHHHHHHHhhhhcCCCCCeEEEE-cCCCCCCCCCCCCcHHHHHHHHHHHhh-------------------------
Q 022570 114 PSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTKGGEKLGYETEAFAIYDVMGY------------------------- 167 (295)
Q Consensus 114 d~~a~~iiaqLl~L~~ed~~k~I~LyI-NSPG~~~~~~~~G~V~aglaIyd~m~~------------------------- 167 (295)
...++.+...|..|..+ +.+.+.|=+ |.+| |.+.++..|.+.+-.
T Consensus 365 ~~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgG--------G~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~ 435 (667)
T PRK11186 365 VGLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGG--------GALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVY 435 (667)
T ss_pred cchHHHHHHHHHHHHHC-CCCEEEEEcCCCCC--------CcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccc
Confidence 34577888888778765 477788877 7789 999999988876421
Q ss_pred cCCCEEEEEeccchhHHHHHHhc
Q 022570 168 VKPPIFTLCVGNAWGEAALLLGA 190 (295)
Q Consensus 168 ik~~V~Tv~~G~AAS~galIlaa 190 (295)
...|+..++-+..||++-++.++
T Consensus 436 ~~gPlvVLVN~~SASASEIfA~a 458 (667)
T PRK11186 436 YKGPLVVLVDRYSASASEIFAAA 458 (667)
T ss_pred cCCCEEEEeCCCCccHHHHHHHH
Confidence 12488888889999998888776
No 166
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=24.10 E-value=1.5e+02 Score=20.05 Aligned_cols=32 Identities=16% Similarity=0.026 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCcccCHHHHHH
Q 022570 235 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 266 (295)
Q Consensus 235 ~~iya~~TG~s~e~I~~~~~rd~~msA~EAle 266 (295)
.+-+++.+|.+...|.++.......+.+.+..
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ 43 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKK 43 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHH
Confidence 35588999999999999998888888887765
No 167
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.06 E-value=2.2e+02 Score=23.52 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=38.0
Q ss_pred CcEEEEcceeCcch--HHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHH--HHHHHhhcCCCEEEEEec
Q 022570 103 NRIVYLGMSFVPSV--TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA--IYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 103 eRIIfL~g~I~d~~--a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~agla--Iyd~m~~ik~~V~Tv~~G 178 (295)
+|++++|..|.... ...+...|. .+.+...+.+.=-+-+ |..+..+. +...+...++++.++++|
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~l~---~~~~~~~~~v~n~g~~--------G~t~~~~~~~~~~~~~~~~~d~v~l~~G 70 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETYLA---ARYPELKLTFRNLGWS--------GDTVSDLAARRDRDVLPAKPDVVSIMFG 70 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHHHH---HhCCCCCcEEEEcccC--------ccchhhhhhhhhcccccCCCCEEEEEee
Confidence 58999999888755 333333332 2223345665433445 66555442 233344456788898887
Q ss_pred cc
Q 022570 179 NA 180 (295)
Q Consensus 179 ~A 180 (295)
.-
T Consensus 71 ~N 72 (191)
T cd01834 71 IN 72 (191)
T ss_pred cc
Confidence 54
No 168
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=23.74 E-value=1.4e+02 Score=22.56 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCcccCHH
Q 022570 234 LVKLYAKHFGKTPEQIEADIRRPKYFSPS 262 (295)
Q Consensus 234 i~~iya~~TG~s~e~I~~~~~rd~~msA~ 262 (295)
+.+.+++.+|.+.+++.++++.. .+|++
T Consensus 46 ~~~~lAk~~G~t~~~l~~~~~~G-kit~~ 73 (75)
T TIGR02675 46 ALQALAKAMGVTRGELRKMLSDG-KLTAD 73 (75)
T ss_pred HHHHHHHHhCCCHHHHHHHHHCC-CCccc
Confidence 56788999999999999988765 34544
No 169
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=23.65 E-value=5.3e+02 Score=23.68 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=27.0
Q ss_pred CCCChhhhhccCcEEEEcc--eeCcchHHHHHHHHHhhhhcCCCCCeEE
Q 022570 92 PPPDLASYLYKNRIVYLGM--SFVPSVTELILAEFLYLQYEDVEKPIYL 138 (295)
Q Consensus 92 ~~~Di~s~Ll~eRIIfL~g--~I~d~~a~~iiaqLl~L~~ed~~k~I~L 138 (295)
.+..+|.. ++.++++.+ ++.+.....+...++.+-.+...+.|..
T Consensus 67 ~p~riY~~--~~~~vv~~~~~~i~p~~~~~~a~~il~~~~~~gv~~Ii~ 113 (238)
T TIGR00161 67 PPVRIYEG--KDGIVLFLSDFIIPPAVVYDMTNAIVEWMVRNNSRELIS 113 (238)
T ss_pred CceEEEec--CCcEEEEEecccCCHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 45666653 334355454 4556667788888887666555555544
No 170
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=23.43 E-value=3.6e+02 Score=26.55 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=52.2
Q ss_pred cEEEEc-ceeCcchHHHHHHHHHhhhhcCCCCCeEEEE-cCCCCCCCCCCCCcHHHHHHHHHHHhhc-------------
Q 022570 104 RIVYLG-MSFVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTKGGEKLGYETEAFAIYDVMGYV------------- 168 (295)
Q Consensus 104 RIIfL~-g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyI-NSPG~~~~~~~~G~V~aglaIyd~m~~i------------- 168 (295)
+|-||. ...+....+.+.+.|..+...+ .+.+.|=+ |.+| |.+.++..|.+.+-.-
T Consensus 195 ~IgYi~i~~F~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~G--------G~~~~a~~ia~~f~~~~~~~~~~~~~~~~ 265 (389)
T PLN00049 195 KIGYIKLTTFNQNASSAVKEAIETLRANG-VDAFVLDLRDNSG--------GLFPAGIEIAKLWLDKGVIVYIADSRGVR 265 (389)
T ss_pred CEEEEEeccccchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCC--------CCHHHHHHHHHHhcCCCcEEEEecCCCce
Confidence 565543 2234556778888888777654 67777777 6789 9999998888877321
Q ss_pred -------------CCCEEEEEeccchhHHHHHHhc
Q 022570 169 -------------KPPIFTLCVGNAWGEAALLLGA 190 (295)
Q Consensus 169 -------------k~~V~Tv~~G~AAS~galIlaa 190 (295)
..|+..++-+..||++-++..+
T Consensus 266 ~~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~a 300 (389)
T PLN00049 266 DIYDADGSSAIATSEPLAVLVNKGTASASEILAGA 300 (389)
T ss_pred eEEecCCCccccCCCCEEEEECCCCccHHHHHHHH
Confidence 1366666667777776666555
No 171
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=23.43 E-value=2.5e+02 Score=23.62 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=39.0
Q ss_pred hccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEecc
Q 022570 100 LYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGN 179 (295)
Q Consensus 100 Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G~ 179 (295)
+||++.--+++.=.-+..-+++..+|.|+. ...+.+|||+.=.-.-. ..--.+|+....-..=|.-||..+
T Consensus 43 ilK~~k~~i~~t~tfa~vi~Flkk~Lkl~a---s~slflYVN~sFAPsPD------q~v~~Ly~cf~~d~~Lvl~Yc~s~ 113 (116)
T KOG3439|consen 43 ILKKSKFKINPTQTFAKVILFLKKFLKLQA---SDSLFLYVNNSFAPSPD------QIVGNLYECFGTDGKLVLNYCISV 113 (116)
T ss_pred ceecceEEeCcchhhHHHHHHHHHHhCCcc---cCeEEEEEcCccCCCch------hHHHHHHHhcCCCCEEEEEEeeec
Confidence 455555555443333455666777777754 56799999953210011 222355655544444455566555
Q ss_pred ch
Q 022570 180 AW 181 (295)
Q Consensus 180 AA 181 (295)
|+
T Consensus 114 A~ 115 (116)
T KOG3439|consen 114 AW 115 (116)
T ss_pred cc
Confidence 54
No 172
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.46 E-value=2.1e+02 Score=24.08 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=15.0
Q ss_pred HHHHHHhhcCCCEEEEEeccc
Q 022570 160 AIYDVMGYVKPPIFTLCVGNA 180 (295)
Q Consensus 160 aIyd~m~~ik~~V~Tv~~G~A 180 (295)
-+.+.+...++++.++++|.-
T Consensus 48 ~~~~~~~~~~pd~vii~~G~N 68 (177)
T cd01844 48 EVAELLRDVPADLYIIDCGPN 68 (177)
T ss_pred HHHHHHHhcCCCEEEEEeccC
Confidence 355666677888888888765
No 173
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=22.03 E-value=2.2e+02 Score=26.57 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=46.5
Q ss_pred hhhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEe
Q 022570 98 SYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 177 (295)
Q Consensus 98 s~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~ 177 (295)
.-++|..|||++..+.++.-......+ + .-++.|.| |++ +.|..+..+....+..+.+|..++.
T Consensus 176 gg~lrP~VV~FGE~lp~~~~~~a~~~~---~----~aDlllvi---GTS------l~V~pa~~l~~~a~~~g~~viiIN~ 239 (260)
T cd01409 176 GGVLKPDVVFFGENVPRDRVVTAAARL---A----EADALLVL---GSS------LMVYSGYRFVLAAAEAGLPIAIVNI 239 (260)
T ss_pred CCEECCCEEECCCCCCHHHHHHHHHHH---h----cCCEEEEe---CcC------ceecchhhHHHHHHHCCCcEEEEcC
Confidence 358999999999988875433333222 2 35788998 544 5677777777777777889988888
Q ss_pred cc
Q 022570 178 GN 179 (295)
Q Consensus 178 G~ 179 (295)
+-
T Consensus 240 ~~ 241 (260)
T cd01409 240 GP 241 (260)
T ss_pred CC
Confidence 64
No 174
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=21.30 E-value=3.1e+02 Score=25.10 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCcccCHHHH
Q 022570 234 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 264 (295)
Q Consensus 234 i~~iya~~TG~s~e~I~~~~~rd~~msA~EA 264 (295)
..+++++.+|.+.+.+++.+....|.+.++.
T Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR01729 226 QVQKMAKLIGGDAEGVPQLLKGLSFPTADEQ 256 (300)
T ss_pred HHHHHHHHhCcCHHHHHHHHhcCCCCCHHHh
Confidence 3477889999999999999988778777654
No 175
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=20.87 E-value=2.8e+02 Score=27.03 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=49.8
Q ss_pred CChhhhhccC-----cEEEEccee-CcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhh
Q 022570 94 PDLASYLYKN-----RIVYLGMSF-VPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY 167 (295)
Q Consensus 94 ~Di~s~Ll~e-----RIIfL~g~I-~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ 167 (295)
+.+...+-+. .+|-+++.- .+- .+..-|.+|+.++..+.|.||+-.-| -...++-...+. ..
T Consensus 183 ~ei~~~~~~~GlG~S~~VsiGnd~~~g~---~~~D~L~~~~~Dp~T~~Ivl~~E~gG--------~~e~~aa~fi~~-~~ 250 (317)
T PTZ00187 183 YEAVAQTTAVGLGQSTCVGIGGDPFNGT---NFIDCLKLFLNDPETEGIILIGEIGG--------TAEEEAAEWIKN-NP 250 (317)
T ss_pred HHHHHHHHHcCCCEEEEEEeCCCCCCCC---CHHHHHHHHhhCCCccEEEEEEecCC--------chhHHHHHHHHh-hc
Confidence 4455444443 467777764 222 35555667777788999999998877 444555555544 33
Q ss_pred cCCCEEEEEeccch
Q 022570 168 VKPPIFTLCVGNAW 181 (295)
Q Consensus 168 ik~~V~Tv~~G~AA 181 (295)
.++||..+..|..+
T Consensus 251 ~~KPVVa~~aGrsa 264 (317)
T PTZ00187 251 IKKPVVSFIAGITA 264 (317)
T ss_pred CCCcEEEEEecCCC
Confidence 46899999888775
No 176
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=20.66 E-value=2.3e+02 Score=18.80 Aligned_cols=32 Identities=9% Similarity=-0.118 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCcccCHHHHHH
Q 022570 235 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 266 (295)
Q Consensus 235 ~~iya~~TG~s~e~I~~~~~rd~~msA~EAle 266 (295)
.+-+++.+|.+...|.++..+..-.+.+++..
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~ 49 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKPTVRLDKVLR 49 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 45688999999999999887665556665543
No 177
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=20.29 E-value=3.2e+02 Score=25.85 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=40.3
Q ss_pred hhccCcEEEEcceeCcchHHHHHHHHHhhhhcCCCCCeEEEEcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCEEEEEec
Q 022570 99 YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (295)
Q Consensus 99 ~Ll~eRIIfL~g~I~d~~a~~iiaqLl~L~~ed~~k~I~LyINSPG~~~~~~~~G~V~aglaIyd~m~~ik~~V~Tv~~G 178 (295)
-++|..|||++..+.+...+..... ++ .-++.|.| |++ +.|..+..+...-+..+.+|..++.+
T Consensus 172 g~lrP~VV~FGE~lp~~~~~~a~~~---~~----~aDlllvi---GTS------l~V~pa~~l~~~a~~~g~~vi~IN~~ 235 (271)
T PTZ00409 172 GIFKPNVILFGEVIPKSLLKQAEKE---ID----KCDLLLVV---GTS------SSVSTATNLCYRAHRKKKKIVEVNIS 235 (271)
T ss_pred CcccCcEEEeCCcCCHHHHHHHHHH---HH----cCCEEEEE---CCC------CcccCHHHHHHHHHHcCCCEEEECCC
Confidence 4677888888888876544443322 21 35677777 433 56766666666666666777776664
Done!