BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022572
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X1J|A Chain A, H71a Mutant Of The Antibiotic Resistance Protein Nima From
           Deinococcus Radiodurans
          Length = 216

 Score = 30.8 bits (68), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 10  SKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSL 69
           ++V +L     G  +P +  ++Y        L Y  ++V  L   A     +GHP    +
Sbjct: 58  ARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYATNVVGRLRANAG----QGHPATLEV 113

Query: 70  VEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNA 102
            EI  FL    P++  +QY+     SV V G A
Sbjct: 114 SEIGQFLPSNSPLELSVQYR-----SVMVFGTA 141


>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
           Protein, Pfl0955c, From Plasmodium Falciparum
          Length = 205

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 11  KVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQ 45
           K +  IT+VK NNY +V  I+ +    ++  N+CQ
Sbjct: 169 KGEKYITRVKFNNYESVHNIAQINNMKIVGYNWCQ 203


>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
          Length = 332

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 52  LRKAKGLSIEGHPVVQ-------SLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE 104
           LRK + L I  + +V+       SLVE+R+   +IR + + +   ++ +  + +GGN +E
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160


>pdb|2CZ2|A Chain A, Crystal Structure Of Glutathione Transferase Zeta 1-1
           (Maleylacetoacetate Isomerase) From Mus Musculus (Form-1
           Crystal)
 pdb|2CZ3|A Chain A, Crystal Structure Of Glutathione Transferase Zeta 1-1
           (Maleylacetoacetate Isomerase) From Mus Musculus (Form-2
           Crystal)
 pdb|2CZ3|B Chain B, Crystal Structure Of Glutathione Transferase Zeta 1-1
           (Maleylacetoacetate Isomerase) From Mus Musculus (Form-2
           Crystal)
          Length = 223

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 53  RKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAI 103
           ++   L I+G  +VQSL  I  +LE+ RPI R L    QK   VR   + I
Sbjct: 64  KQVPALKIDGITIVQSLA-IXEYLEETRPIPRLLPQDPQKRAIVRXISDLI 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.133    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,255,676
Number of Sequences: 62578
Number of extensions: 269664
Number of successful extensions: 493
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 6
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)