BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022572
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KII6|NGDN_BOVIN Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1
Length = 315
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 144/299 (48%), Gaps = 47/299 (15%)
Query: 1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
++E + + ++VQ+L KV+ YPT G+S LE K LLL Y + + +L KA G S+
Sbjct: 21 LQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYLMDLSHLILDKASGGSL 80
Query: 61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
+GHP V LVEIR LEK+RP+D+KL+YQI KL V G+ E
Sbjct: 81 QGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------N 125
Query: 121 DLLKYRPNPDMLVSKTDMTT----------------EDGAGV---YKPPKFAPASMDEDK 161
D L+++P+P ++SK + G G Y PP+ P DE +
Sbjct: 126 DPLRFKPHPSNMMSKLSSEDEEEDEAEEGQSGASGKKSGKGTAKKYVPPRLVPVHYDETE 185
Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
R E+ L + K R+A S+ +REL PEE+R+ +TR + + R
Sbjct: 186 AER-EKKRLERAK---RRALSSSVIRELKEQYSDAPEEIRD---ARHPHVTRQSQEDQHR 238
Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL----PIEEKDERPT 276
EE + R ++K EK + K + L LT + +I +L P ++D+ PT
Sbjct: 239 INYEESMMVRLSVSKREKGRRKRANVMSSQLHSLT--HFSDISALTGGTPHLDEDQNPT 295
>sp|Q5M985|NGDNB_XENLA Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-b PE=1 SV=1
Length = 316
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 142/285 (49%), Gaps = 43/285 (15%)
Query: 1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
+++ + K+ + VQ L KV+ + Y T G+S+LE K LLL Y Q + + +L K G SI
Sbjct: 21 LQDQITKVTAHVQDLTQKVRSSIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSI 80
Query: 61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
+G+P + LVE+R LEK+RPID+KL+YQI KL V G+ E
Sbjct: 81 KGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------N 125
Query: 121 DLLKYRPNPDMLVSKTDM-------TTEDGA--GV----------YKPPKFAPASMDEDK 161
D L+++PNP L+SK + E+GA GV Y PP+ AP D+ +
Sbjct: 126 DPLRFKPNPQNLMSKLSEPDERESDSGEEGAEGGVAKKPQSKVKRYIPPRLAPVHYDDTE 185
Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
R+ R R +K L S+ +REL PEE+RE + + R+ + + R
Sbjct: 186 AEREHRIVERAKKLAL----SSSTIRELKEQYSDAPEEIRE---GRAYHMMRHDKEEQHR 238
Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 266
EE + R +T+ EK + K + + L LT + +I +L
Sbjct: 239 INHEESMMVRLNMTRKEKARKKRVLSMTSQLNSLTH--FSDISAL 281
>sp|Q4KLC4|NGDNA_XENLA Neuroguidin-A OS=Xenopus laevis GN=ngdn-a PE=1 SV=1
Length = 317
Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 141/285 (49%), Gaps = 43/285 (15%)
Query: 1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
+++ + K+ + VQ L KV+ Y T G+S+LE K LLL Y Q + + +L K G SI
Sbjct: 22 LQDQITKVTAHVQDLTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSI 81
Query: 61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
+G+P + LVE+R LEK+RPID+KL+YQI KL V G+ E
Sbjct: 82 KGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------N 126
Query: 121 DLLKYRPNPDMLVSKTDM-------TTEDGA--GV----------YKPPKFAPASMDEDK 161
D L+++PNP L+SK + E+GA GV Y PP+ AP D+ +
Sbjct: 127 DPLRFKPNPQNLMSKLSEPDERESDSGEEGAEGGVAKKPQSKVKRYIPPRLAPVHYDDTE 186
Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
R+ R R +K L S+ +REL PEE+RE + + R+ + + R
Sbjct: 187 AEREHRIVERAKKLAL----SSSTIRELKEQYSDAPEEIRE---GRAYHMMRHDKEEQHR 239
Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 266
EE + R +T+ EK + K + + L LT + +I +L
Sbjct: 240 INHEESMMVRLNMTRKEKARKKRVLSMTSQLNSLTH--FSDISAL 282
>sp|Q28IV8|NGDN_XENTR Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1
Length = 316
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 139/285 (48%), Gaps = 43/285 (15%)
Query: 1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
+++ + K+ + VQ+L KV+ Y T G+S+LE K LLL Y Q + + +L K G SI
Sbjct: 22 LQDQVTKVTAHVQALTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSI 81
Query: 61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
+G+P + LVE+R LEK+RPID+KL+YQI KL V G+ E
Sbjct: 82 KGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVRASVTGSLGE---------------N 126
Query: 121 DLLKYRPNPDMLVSKTDM-------TTEDGAGV------------YKPPKFAPASMDEDK 161
D L+++PNP L+SK + ED A Y PP+ AP D+ +
Sbjct: 127 DPLRFKPNPQNLISKLSEADEGESDSGEDCAESGNAKKPQSKVKKYIPPRLAPVHYDDTE 186
Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
R+ R R +K L S+ +REL PEE+RE + + R+ + + R
Sbjct: 187 AEREHRIIERAKKLAL----SSSTIRELKEQYSDAPEEIRE---GRAYHMMRHDKEEQHR 239
Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 266
EE + R +T+ EK + K + + L LT + +I +L
Sbjct: 240 INHEESMMVRLNMTRKEKARKKRVLAMTSQLNSLTH--FSDISAL 282
>sp|Q9DB96|NGDN_MOUSE Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1
Length = 315
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 137/285 (48%), Gaps = 43/285 (15%)
Query: 1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
++E + + +++Q+L TKV+ Y T G+S+LE K LLL Y + + +L KA G S+
Sbjct: 21 LQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKASGASL 80
Query: 61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
+GHP V LVEIR LEK+RP+D+KL+YQI KL V G+ E
Sbjct: 81 QGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------N 125
Query: 121 DLLKYRPNPDMLV-------------------SKTDMTTEDGAGVYKPPKFAPASMDEDK 161
D L+++P+P +V + + + A Y PP+ P DE +
Sbjct: 126 DPLRFKPHPSNMVSKLSSEDEEESEAEEGQSEASGKKSAKGSAKKYVPPRLVPVHYDETE 185
Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
R+++ L K K R+A S+ +REL PEE+R+ +TR + + R
Sbjct: 186 AEREQKR-LEKAK---RRALSSSVIRELKEQYSDAPEEIRD---ARHPHVTRQSQEDQHR 238
Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 266
EE + R ++K EK + + L LT + +I +L
Sbjct: 239 VNYEESMMVRLSVSKREKGLRRRASAMSSQLHSLTH--FSDISAL 281
>sp|Q8NEJ9|NGDN_HUMAN Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1
Length = 315
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 137/285 (48%), Gaps = 43/285 (15%)
Query: 1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
++E + + ++V+SL KV+ YPT G+S+LE K LLL Y + + +L KA G S+
Sbjct: 21 LQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGGSL 80
Query: 61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
+GH V LVEIR LEK+RP+D+KL+YQI KL V G+ E
Sbjct: 81 QGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSE---------------N 125
Query: 121 DLLKYRPNPDMLVSK-------------------TDMTTEDGAGVYKPPKFAPASMDEDK 161
D L+++P+P ++SK + + + Y PP+ P DE +
Sbjct: 126 DPLRFKPHPSNMMSKLSSEDEEEDEAEDDQSEASGKKSVKGVSKKYVPPRLVPVHYDETE 185
Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
R E+ L + K R+A S+ +REL PEE+R+ +TR + + R
Sbjct: 186 AER-EKKRLERAK---RRALSSSVIRELKEQYSDAPEEIRD---ARHPHVTRQSQEDQHR 238
Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 266
EE + R ++K EK + K + L LT + +I +L
Sbjct: 239 INYEESMMVRLSVSKREKGRRKRANVMSSQLHSLTH--FSDISAL 281
>sp|Q6PFJ1|NGDN_DANRE Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1
Length = 315
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 47/277 (16%)
Query: 1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
+ E + + S V+ LI KV+ Y T G+S+L+ ++ LLL Y Q I + + K +G S+
Sbjct: 25 LTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLLLFYLQDITHLISLKTEGESL 84
Query: 61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
+ + + LV IR LEK+RP+D+KL+YQI KL V G+ E
Sbjct: 85 KDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVRTAVTGSLSE---------------N 129
Query: 121 DLLKYRPNPDMLVSK---TDMTTEDGAGV-------------YKPPKFAPASMDEDKTSR 164
D L +RPNP LVSK ++ + +DG G Y PP+ AP D D T
Sbjct: 130 DPLHFRPNPQSLVSKLSESEDSDDDGVGGKTKEQKEPSGGRRYVPPRIAPMHYDGDLTE- 188
Query: 165 KERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQ 224
+R R EK+ R A +S+ ++EL PEE+R + R+ ++ EE R+
Sbjct: 189 ADRQKERVEKQK-RAALRSSVIQELRQQYSDAPEEIR-----DRRDFQTDRQGREELNRK 242
Query: 225 --EEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESF 259
EE + R T+ +K + + G++G+T
Sbjct: 243 NYEESMMVRLSTTRDQKLR-------KRGMMGMTSQL 272
>sp|Q6AXX4|SAS10_RAT Something about silencing protein 10 OS=Rattus norvegicus GN=Utp3
PE=2 SV=1
Length = 470
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
+K L +++ +++ LI V+ P G YL+ K+ L LNYC +I +YL+ KA+ +
Sbjct: 229 LKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCANISFYLILKARRVPA 288
Query: 61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
GHPV++ LV R + K+ +D+KL +I+ L + + G + +NP A
Sbjct: 289 HGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGKKD-LNPKAK--------- 338
Query: 121 DLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMD 158
L K +P K+ T+ A + + P+F A+++
Sbjct: 339 -LTKTKP-------KSAKQTDVNADLTEEPEFDEAALE 368
>sp|Q09713|YA36_SCHPO Uncharacterized protein C18B11.06 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC18B11.06 PE=1 SV=1
Length = 327
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 48/228 (21%)
Query: 39 LLLNYCQSIVYYLLRKAKGLSIEGH-PVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVR 97
LLL+Y Q + + +L K S H VV+ LV++R+ +EKIRP++ ++QY + KL +R
Sbjct: 35 LLLSYVQKLAFLMLVKLDDESFLQHQDVVEKLVQLRIEIEKIRPLENRIQYSVDKL--LR 92
Query: 98 VG------GNAIEPVNPSANESGEPQKTEDLLK--YRPN-------PDMLVSKTDMTTED 142
G+ EP N +G + ++D LK Y+PN D S+ ++ ED
Sbjct: 93 AAGRKEEIGSIKEPEN-----NGNDKDSQDSLKLHYKPNLSEFADDSDGPASENNVVKED 147
Query: 143 GA-----------------GVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTF 185
G+Y+PP+ +MD +K +R N L E + +
Sbjct: 148 DKSSISSEDEEEELRSAKDGIYRPPRIRAVTMDSEKRTRHRPNHLVDEFVSSDMSSVPQS 207
Query: 186 MRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAP 233
M + ++LE R V+ + REL + M ER EE +TR P
Sbjct: 208 MPSVGSNLEKRG----RVIHADERELQK----MRERIEYEESNYTRLP 247
>sp|Q9JI13|SAS10_MOUSE Something about silencing protein 10 OS=Mus musculus GN=Utp3 PE=1
SV=1
Length = 469
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 60/100 (60%)
Query: 1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
++ L +++ +++ L+ V+ PT G YL+ K+ L LNYC +I +YL+ KA+ +
Sbjct: 229 LQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFYLILKARRVPA 288
Query: 61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGG 100
GHPV++ LV R + K+ +D+KL +I+ L + + G
Sbjct: 289 HGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDGA 328
>sp|Q9NQZ2|SAS10_HUMAN Something about silencing protein 10 OS=Homo sapiens GN=UTP3 PE=1
SV=1
Length = 479
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 25 PTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDR 84
P G YL K+ L LNYC +I +YL+ KA+ + GHPV++ LV R + K+ +D+
Sbjct: 257 PPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQ 316
Query: 85 KLQYQIQKLTSVR 97
KL +I+ L +++
Sbjct: 317 KLSSEIRHLLTLK 329
>sp|Q9I7W5|SAS10_DROME Something about silencing protein 10 OS=Drosophila melanogaster
GN=Sas10 PE=1 SV=2
Length = 428
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 53/81 (65%)
Query: 1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
++ LD++++ ++ ++ V+ ++ P V + Y H +L YC ++ +YLL KA+ + +
Sbjct: 193 FQQHLDEVKNLLKPVLNYVRKHDVPMVPALQYAGLCHTVLTTYCSNVAFYLLLKARRIDV 252
Query: 61 EGHPVVQSLVEIRLFLEKIRP 81
+ HPV++ LV+++ +E+++P
Sbjct: 253 KAHPVIRRLVQLKDLIEELKP 273
>sp|Q5XJ97|C1D_DANRE Nuclear nucleic acid-binding protein C1D OS=Danio rerio GN=c1d PE=2
SV=1
Length = 148
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 4 GLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGH 63
L +++ VQ+L++ + + +D + +AK L+ Y + ++++ +G++ + H
Sbjct: 24 SLSSVQNMVQTLVSVSRSDRLLKLDPLE--QAKLDLMSAYALNSMFWMYLVTQGVNPKDH 81
Query: 64 PVVQSLVEIRLFLEKIRPI-DRKLQYQIQKLTSVRVGGNAI 103
P+ Q L IR ++ K++ I DR+ I K + R NA+
Sbjct: 82 PIKQELERIRTYMNKVKEITDRRKAAHIDKEAASRFVRNAL 122
>sp|Q5ZHS3|C1D_CHICK Nuclear nucleic acid-binding protein C1D OS=Gallus gallus GN=C1D
PE=2 SV=1
Length = 142
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 34 EAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPI-DRKLQYQIQK 92
+AK L+ Y + ++++ +G++ + HPV Q L IR ++ K++ I D+K ++ K
Sbjct: 52 QAKLDLVSAYTLNSMFWVYLATQGINPKEHPVKQELERIRTYMNKVKEIADKKKASKLDK 111
Query: 93 LTSVRVGGNAIEPVNP 108
+ R NA+ NP
Sbjct: 112 GAASRFVRNALWEPNP 127
>sp|P40079|LCP5_YEAST U3 small nucleolar ribonucleoprotein protein LCP5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LCP5 PE=1
SV=1
Length = 357
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 42/224 (18%)
Query: 70 VEIRLFLEK-IRPIDRKLQYQIQKLTSVRVG---------GNAIEP---VNPSAN-ESGE 115
++ R+ LE+ ++P+++KL YQ+ KLT V A+E VN S N +S +
Sbjct: 100 IQHRVVLERGVKPLEKKLAYQLDKLTRAYVKMEKEYKDAEKRALEKSTLVNHSGNDDSED 159
Query: 116 PQKTEDLLKYRPNPDMLVSKTDMTT----------EDG-------AGVYKPPKFAPASMD 158
+ +ED + YRPN +++ ++ E+G GVYKPPK A +
Sbjct: 160 DESSEDEIAYRPNTSGIINTNKKSSAYRVEETAKQENGEENDDNETGVYKPPKIT-AVLP 218
Query: 159 EDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEV----REVVGVESRELTRY 214
+T ++R R+ K+ ++R M E + + +P+ ++V +
Sbjct: 219 PQQTHFEDRFDAREHKDRSNKSRMQA-MEEYIRESSDQPDWSASIGADIVNHGRGGIKSL 277
Query: 215 KEMMEER--ARQEEELFTRAPLT-KMEKKKMKHLKKSRNGLLGL 255
++ +ER EE+ FTR +T K EK+K K ++ RN + +
Sbjct: 278 RDTEKERRVTSFEEDNFTRLNITNKAEKRKQK--QRERNARMNV 319
>sp|P16919|RHSD_ECOLI Protein RhsD OS=Escherichia coli (strain K12) GN=rhsD PE=2 SV=3
Length = 1426
Score = 35.0 bits (79), Expect = 0.64, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 146 VYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQS-----TFMRELVNDLEGRPEEV 200
VY+P F P E + +E+ R ETL+Q F ELV L+ EE+
Sbjct: 1058 VYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSENGHGVVFPAELVRLLDRLEEEI 1117
Query: 201 R-EVVGVESRE-LTRYKEMMEERARQEEELFTRA 232
R + V ESR L + +E+ ARQ E +T A
Sbjct: 1118 RADRVSSESRAWLAQCGLTVEQLARQVEPEYTPA 1151
>sp|Q9US54|TAF11_SCHPO Transcription initiation factor TFIID subunit 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf11 PE=3 SV=1
Length = 199
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 137 DMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGR 196
D + AG + A + + +S+++ N R+E+ L + + F ++ + G+
Sbjct: 20 DQSNSPTAGAHAKANTASPAAEPAPSSKEKENWNRQEENDLEEDDRDDFGTAAISKVAGK 79
Query: 197 PEEVREVVGVESRELTRYKEMME---ERARQEEELFTRAPLTKMEKKKMKH 244
P E + E+ E R K ++E E Q E+F RA L K KK+ +
Sbjct: 80 PGETDD----EANEKLRTKYLLESFDEEQMQRYEVFRRANLNKTNVKKLAN 126
>sp|P24211|RHSE_ECOLI Putative protein RhsE OS=Escherichia coli (strain K12) GN=rhsE PE=5
SV=3
Length = 682
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 146 VYKPPKFAPASMDEDKTSRKERNALRKEKETLRQ-----ARQSTFMRELVNDLEGRPEEV 200
VY+P F P E + +E+ R ETL+Q F ELV L+ EE+
Sbjct: 333 VYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSENGHGVVFPAELVRLLDRLEEEI 392
Query: 201 R-EVVGVESRE-LTRYKEMMEERARQEEELFTRA 232
R + V ESR L + +E+ ARQ E +T A
Sbjct: 393 RADRVSSESRAWLAQCGLTVEQLARQVEPEYTPA 426
>sp|F1QIC4|PHR4A_DANRE Phosphatase and actin regulator 4A OS=Danio rerio GN=phactr4a PE=3
SV=2
Length = 725
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 166 ERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQE 225
+RN L + E +R+A +S R L L RP + +++R++ R+ E +E Q+
Sbjct: 623 QRNILLAKNEEVRRAERSEIKRRLTRKLSQRP----TIADLQARKILRFHEYVESTHAQD 678
Query: 226 EELFTRAPLTKMEKKKMKHLKKSRN 250
+ P TK+ ++K N
Sbjct: 679 YDRRADKPWTKLTPADKAAIRKELN 703
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,689,044
Number of Sequences: 539616
Number of extensions: 4831791
Number of successful extensions: 17227
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 566
Number of HSP's that attempted gapping in prelim test: 16304
Number of HSP's gapped (non-prelim): 1376
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)