Query 022572
Match_columns 295
No_of_seqs 177 out of 300
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rh3_A Uncharacterized DUF3829 47.7 19 0.00064 33.1 4.5 75 2-78 93-173 (264)
2 3iee_A Putative exported prote 19.0 1.1E+02 0.0039 28.0 4.5 74 3-78 102-181 (270)
3 1gk7_A Vimentin; intermediate 18.2 45 0.0015 21.8 1.2 19 73-91 16-37 (39)
4 2jz1_A Protein doublesex; sex 13.7 3.4E+02 0.011 20.4 5.1 40 37-78 6-57 (80)
5 1zv1_A Doublesex protein; UBA 11.9 4.2E+02 0.014 19.1 5.0 39 37-77 6-56 (65)
6 3hm6_X Plexin-B1; structural g 11.7 1.4E+02 0.0047 30.6 3.3 64 29-92 146-229 (644)
7 1xkm_B Distinctin chain B; por 10.1 2.2E+02 0.0074 16.7 2.4 16 65-80 2-17 (26)
8 3swh_A MUNC13-1, protein UNC-1 10.0 9.5E+02 0.032 22.1 8.3 92 3-94 53-167 (341)
9 1deq_A Fibrinogen (alpha chain 7.1 1.5E+03 0.05 21.7 8.2 27 30-56 76-102 (390)
10 3ig3_A Plxna3 protein; plexin 5.9 2.8E+02 0.0095 28.4 2.6 64 29-92 120-205 (627)
No 1
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=47.71 E-value=19 Score=33.07 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHH---HHHHHHHHHHHHH---HHhcCCCCCCCHHHHHHHHHHHH
Q 022572 2 KEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLL---LLNYCQSIVYYLL---RKAKGLSIEGHPVVQSLVEIRLF 75 (295)
Q Consensus 2 k~~l~~v~~~v~pll~~vk~~~~~~~~GislL~~K~~l---LLsY~~~L~~yll---lK~~g~si~~hpvv~rLve~R~~ 75 (295)
.+...++......++..++...+ ..|-+|+...+.+ |.-|-.+|.=+|- -+++.+.+.+||+-+.++..|.+
T Consensus 93 f~s~~~~yan~~~~~SYlk~ed~--~~~akL~~~~~~l~~em~e~k~~ifd~lsp~aeqAE~vlL~DhPLKeqIla~kkm 170 (264)
T 3rh3_A 93 FNVRTQFYDNFNKFLAYKKSKDT--AKTAQLLDENYKLSVELSEYKQVIFDILSPLTEQAESELLADEPLKDQIMAMRKM 170 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 34556666777778888887775 4899999999999 8778887766653 36778889999999999887765
Q ss_pred HHh
Q 022572 76 LEK 78 (295)
Q Consensus 76 LEK 78 (295)
+--
T Consensus 171 ~~~ 173 (264)
T 3rh3_A 171 SGT 173 (264)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 2
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=19.04 E-value=1.1e+02 Score=27.96 Aligned_cols=74 Identities=14% Similarity=0.248 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHH---HHHHHHHHHHHHHH---HhcCCCCCCCHHHHHHHHHHHHH
Q 022572 3 EGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLL---LLNYCQSIVYYLLR---KAKGLSIEGHPVVQSLVEIRLFL 76 (295)
Q Consensus 3 ~~l~~v~~~v~pll~~vk~~~~~~~~GislL~~K~~l---LLsY~~~L~~ylll---K~~g~si~~hpvv~rLve~R~~L 76 (295)
+...++......++..++...+. .|--|+++++.+ +..|-++|.=.|-. +++..-+.+||+-+.++..|-++
T Consensus 102 ~s~~~~~an~~~~~sYlkaed~k--kgkKL~~~n~~l~~~~~e~k~~ifd~Lsp~aeqAE~~lL~DhPLKeqIla~kkm~ 179 (270)
T 3iee_A 102 QARTEFYANFDTYLSYLKKKDVT--NAKKLLDVNYQLSTQMSEYKQNIFDILSPFTEQAELVLLVDNPLKAQIMSVRKMS 179 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 34456666677778888877754 888899888776 34455555444433 56778899999999999988875
Q ss_pred Hh
Q 022572 77 EK 78 (295)
Q Consensus 77 EK 78 (295)
.-
T Consensus 180 ~~ 181 (270)
T 3iee_A 180 ST 181 (270)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 3
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=18.21 E-value=45 Score=21.75 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=13.7
Q ss_pred HHHHHhhhhhHH---hhHHHHH
Q 022572 73 RLFLEKIRPIDR---KLQYQIQ 91 (295)
Q Consensus 73 R~~LEKirPle~---KL~yQId 91 (295)
=.+|+|+|.||. +|..+|.
T Consensus 16 AsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 16 ANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999984 4666664
No 4
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=13.75 E-value=3.4e+02 Score=20.41 Aligned_cols=40 Identities=23% Similarity=0.494 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Q 022572 37 HLLLLNYCQSI------------VYYLLRKAKGLSIEGHPVVQSLVEIRLFLEK 78 (295)
Q Consensus 37 ~~lLLsY~~~L------------~~ylllK~~g~si~~hpvv~rLve~R~~LEK 78 (295)
...||.||+-| ..|+++|.-|..++ .+..|+.+-+.++..
T Consensus 6 ~e~ll~~c~kLLEkF~YpWEMMpLMyVILK~a~~d~e--eAsrrI~eg~~~vn~ 57 (80)
T 2jz1_A 6 QDVFLDYCQKLLEKFRYPWELMPLMYVILKDADANIE--EASRRIEEGQYVVNE 57 (80)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHTTTCHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCHH--HHHHHHHHHHHHHHH
Confidence 56788888876 46888888776654 567777777766654
No 5
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=11.90 E-value=4.2e+02 Score=19.10 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=26.6
Q ss_pred HHHHHHHHHHH------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 022572 37 HLLLLNYCQSI------------VYYLLRKAKGLSIEGHPVVQSLVEIRLFLE 77 (295)
Q Consensus 37 ~~lLLsY~~~L------------~~ylllK~~g~si~~hpvv~rLve~R~~LE 77 (295)
...||.||+-| ..|+++|.-|..+. .+..|+.+-..++.
T Consensus 6 ~d~Ll~~c~kLLEkf~YpWEmMpLMYVILK~A~~d~e--eAsrrI~Eg~~~v~ 56 (65)
T 1zv1_A 6 QDVFLDYCQKLLEKFRYPWELMPLMYVILKDADANIE--EASRRIEEGQYVVN 56 (65)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHTTTCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHhHHHHHHHhccCCCHH--HHHHHHHHHHHHHH
Confidence 35678888765 46888888776654 56777776665554
No 6
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=11.69 E-value=1.4e+02 Score=30.63 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=40.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCH---------HHHHHHH-------HHHHHHhh-hhhH---HhhHH
Q 022572 29 GISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHP---------VVQSLVE-------IRLFLEKI-RPID---RKLQY 88 (295)
Q Consensus 29 GislL~~K~~lLLsY~~~L~~ylllK~~g~si~~hp---------vv~rLve-------~R~~LEKi-rPle---~KL~y 88 (295)
-.|||-+=-|-=|.||+.|...||.-+-..++..|| ||++|+. +.-+-|-. .||. .-|++
T Consensus 146 vASLL~vaL~~kleY~T~Il~~LL~dLi~~~~~k~PkLmlRRTESVvEKmLtnWmsicLY~~Lre~aGepLf~L~~AiKq 225 (644)
T 3hm6_X 146 VASLLTVALHGKLEYFTDILRTLLSDLVAQYVAKNPKLMLRRTETVVEKLLTNWMSICLYTFVRDSVGEPLYMLFRGIKH 225 (644)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSCGGGTTCSSCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence 456666666666889999999888755433334465 7777653 22222333 3544 77999
Q ss_pred HHHH
Q 022572 89 QIQK 92 (295)
Q Consensus 89 QIdK 92 (295)
||+|
T Consensus 226 Qv~K 229 (644)
T 3hm6_X 226 QVDK 229 (644)
T ss_dssp HHHT
T ss_pred hccc
Confidence 9996
No 7
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=10.13 E-value=2.2e+02 Score=16.73 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 022572 65 VVQSLVEIRLFLEKIR 80 (295)
Q Consensus 65 vv~rLve~R~~LEKir 80 (295)
.|.-|++.|.+||++.
T Consensus 2 lvsgliearkyleqlh 17 (26)
T 1xkm_B 2 LVSGLIEARKYLEQLH 17 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4667899999998753
No 8
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=10.03 E-value=9.5e+02 Score=22.09 Aligned_cols=92 Identities=14% Similarity=0.188 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCCCCcc-----HHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHH
Q 022572 3 EGLDKLRSKVQSLITKVKGNNYPTVDGIS-----YLEAKHLLLLNYCQSIVYYLLRKAKGL-SIEGHPVVQSLVEIRLFL 76 (295)
Q Consensus 3 ~~l~~v~~~v~pll~~vk~~~~~~~~Gis-----lL~~K~~lLLsY~~~L~~ylllK~~g~-si~~hpvv~rLve~R~~L 76 (295)
.++.++-..+....+-++.=.+|...+.. |++.=+..++.||.-|.=-+---+... ...-.=++..+-++|+.|
T Consensus 53 sSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~~e~~~~~Cv~lNNie~lR~~L 132 (341)
T 3swh_A 53 CSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQL 132 (341)
T ss_dssp THHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcccHHHHHHHH
Confidence 34555566666666666655566555533 445555556666655533222111111 000123578888999999
Q ss_pred Hhh-----------------hhhHHhhHHHHHHHH
Q 022572 77 EKI-----------------RPIDRKLQYQIQKLT 94 (295)
Q Consensus 77 EKi-----------------rPle~KL~yQIdKLl 94 (295)
+++ +.+..+|.-.||.|.
T Consensus 133 ~~l~~~l~~~~l~~~~~~~~~~lq~~l~~vl~~l~ 167 (341)
T 3swh_A 133 EKMFEAMGGKELDAEASGTLKELQVKLNNVLDELS 167 (341)
T ss_dssp HHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 873 556677777888776
No 9
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=7.05 E-value=1.5e+03 Score=21.68 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022572 30 ISYLEAKHLLLLNYCQSIVYYLLRKAK 56 (295)
Q Consensus 30 islL~~K~~lLLsY~~~L~~ylllK~~ 56 (295)
|-++.-.+.-.-+|+.+|.=++--+..
T Consensus 76 L~~~s~s~~~~~~y~~~~~~~lk~~~~ 102 (390)
T 1deq_A 76 LFNYQKNSKDSNTLTKNIVELMRGDFA 102 (390)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344566666777888888777665544
No 10
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=5.94 E-value=2.8e+02 Score=28.35 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=40.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCC---------HHHHHHHHH-------HHHHHhhh-hh---HHhh
Q 022572 29 GISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI--EGH---------PVVQSLVEI-------RLFLEKIR-PI---DRKL 86 (295)
Q Consensus 29 GislL~~K~~lLLsY~~~L~~ylllK~~g~si--~~h---------pvv~rLve~-------R~~LEKir-Pl---e~KL 86 (295)
-.|||.+=-|-=|.||+.|...||.-.-..++ +.| -||++|+.. .-+-|-.- || -.-|
T Consensus 120 vASLL~vaL~~kleY~T~Il~~LL~dli~~~v~~k~~PkLmlRRtESVvEKmLtnW~sicLY~~Lke~aGepLf~L~~Ai 199 (627)
T 3ig3_A 120 VASLTMVALQSRLDYATGLLKQLLADLIEKNLESKNHPKLLLRRTESVAEKMLTNWFTFLLHKFLKECAGEPLFLLYCAI 199 (627)
T ss_dssp HHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTTSCCCHHHHHHHHHHHHHTHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcccCCcchhhcccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 46677776667789999999988875433333 223 478887632 11222222 44 4779
Q ss_pred HHHHHH
Q 022572 87 QYQIQK 92 (295)
Q Consensus 87 ~yQIdK 92 (295)
++||+|
T Consensus 200 K~Qv~K 205 (627)
T 3ig3_A 200 KQQMEK 205 (627)
T ss_dssp HHHHTT
T ss_pred HHhccc
Confidence 999986
Done!