BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022573
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|D Chain D, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|F Chain F, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|H Chain H, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|J Chain J, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|L Chain L, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 385
Score = 316 bits (810), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 206/293 (70%), Gaps = 3/293 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AK MG+ ++A TGAGQHGV ++MG D+E+Q V MKLLGA
Sbjct: 91 LLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGAN 150
Query: 61 VKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V+ K+A +EA+R+WV E ++YL G+VVGPHP P +VR+FQS+IG+E + Q
Sbjct: 151 VIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQ 210
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
+E G PDV++ACVG GSNA+G+F+ F+ND+ V+L+GVEA G GL+SGKH+A+L G+
Sbjct: 211 ILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQ 270
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VGV+HG +SY LQDEEGQI THS+ GL+YPGVGPE ++L+ RAE+ T TD+EA++A
Sbjct: 271 VGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKA 330
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 290
+ L R EGI PALE++HA+A+ KL + ++VN SG GDKD+D V+
Sbjct: 331 FHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLK 383
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|B Chain B, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|C Chain C, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|D Chain D, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
Length = 388
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 206/293 (70%), Gaps = 3/293 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AK MG+ ++A TGAGQHGV ++MG D+E+Q V MKLLGA
Sbjct: 91 LLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGAN 150
Query: 61 VKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V+ K+A +EA+R+WV E ++YL G+VVGPHP P +VR+FQS+IG+E + Q
Sbjct: 151 VIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQ 210
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
+E G PDV++ACVG GSNA+G+F+ F+ND+ V+L+GVEA G GL+SGKH+A+L G+
Sbjct: 211 ILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQ 270
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VGV+HG +SY LQDEEGQI THS+ GL+YPGVGPE ++L+ RAE+ T TD+EA++A
Sbjct: 271 VGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKA 330
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 290
+ L R EGI PALE++HA+A+ KL + ++VN SG GDKD+D V+
Sbjct: 331 FHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLK 383
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2E|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2J|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
pdb|2O2J|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
Length = 422
Score = 296 bits (759), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 144/294 (48%), Positives = 197/294 (67%), Gaps = 3/294 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++A+RMG+ ++A TGAGQHGV ++MG D +Q+ V M+LLGA+
Sbjct: 122 LLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAE 181
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V AV K+A +EA R+WV N + +YY GT GPHP P MVR+FQ IIG E R Q
Sbjct: 182 VVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQ 241
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
+ G PD ++ACVG GSNA+G+FH F++D VRL+G EAAG G+++G+HAAT G
Sbjct: 242 IQGQAGRLPDAVVACVGGGSNAIGIFHAFLDDPGVRLVGFEAAGDGVETGRHAATFTAGS 301
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
G +HG+ SYLLQDE+GQ + +HS+ GL+YPGVGPE ++L++ GR ++ TD EA+ A
Sbjct: 302 PGAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDA 361
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291
+ LCR+EGI PA+E++HA+A KL L GA +VVN SG GDKDV+T +
Sbjct: 362 FGLLCRMEGIIPAIESAHAVAGALKLGVELGRGAVIVVNLSGRGDKDVETAAKW 415
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb
pdb|2DH6|A Chain A, Crystal Structure Of E. Coli Apo-trpb
Length = 397
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 96 LLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 155
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 156 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 215
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
+E+ G PD ++ACVG GSNA+G+F +FIN+ +V LIGVE G G+++G+H A L G
Sbjct: 216 ILEREGRLPDAVIACVGGGSNAIGMFADFINETNVGLIGVEPGGHGIETGEHGAPLKHGR 275
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q E+GQI ++S+ GL++P VGP+ ++L TGRA++ + TD EA++A
Sbjct: 276 VGIYFGMKAPMMQTEDGQIEESYSISAGLDFPSVGPQHAYLNSTGRADYVSITDDEALEA 335
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LC EGI PALE+SHALA K+ P+ + +VVN SG GDKD+ TV
Sbjct: 336 FKTLCLHEGIIPALESSHALAHALKMMRENPDKEQLLVVNLSGRGDKDIFTV 387
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9
Inhibitor In Alpha Site
Length = 391
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 94 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 153
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 154 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 213
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 214 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 273
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 274 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 333
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 334 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 385
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 96 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 155
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 156 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 215
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 216 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 275
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 276 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 335
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 336 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With L-ser Bound To
The Beta Site
Length = 394
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 95 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 154
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 155 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 214
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 215 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 274
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 275 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 334
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 335 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium
pdb|1KFC|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Propanol Phosphate
pdb|1KFJ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With L-Serine
pdb|1KFK|B Chain B, Crystal Structure Of Tryptophan Synthase From Salmonella
Typhimurium
pdb|2RH9|B Chain B, Tryptophan Synthase Complexed With Igp, Internal Aldimine,
Ph 9.0
pdb|2RHG|B Chain B, Tryptophan Synthase Complexed With Igp, Ph 7.0, Internal
Aldimine
Length = 397
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 96 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 155
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 156 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 215
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 216 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 275
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 276 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 335
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 336 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1KFB|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Glycerol Phosphate
pdb|1TJP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 1-
[(2-Hydroxylphenyl)amino]3-Glycerolphosphate
pdb|1WBJ|B Chain B, Wildtype Tryptophan Synthase Complexed With Glycerol
Phosphate
pdb|2CLI|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2CLK|B Chain B, Tryptophan Synthase In Complex With D-Glyceraldehyde 3-
Phosphate (G3p)
pdb|2CLL|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2J9X|B Chain B, Tryptophan Synthase In Complex With Gp,
Alpha-D,L-Glycerol- Phosphate, Cs, Ph6.5 - Alpha
Aminoacrylate Form - (Gp)e(A- A)
pdb|3CEP|B Chain B, Structure Of A Tryptophan Synthase Quinonoid Intermediate
Length = 396
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 95 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 154
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 155 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 214
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 215 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 274
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 275 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 334
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 335 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
pdb|1X1Q|B Chain B, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
Length = 418
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++A+R G++ ++A TGAGQHGV V+ G D+ +Q+ V KLLGA+
Sbjct: 118 LLARRXGKRRVIAETGAGQHGVSVATVAALFGLECVVYXGEEDVRRQALNVFRXKLLGAE 177
Query: 61 VKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V+ V K+A++EAIR+W+ N+ ++Y+ G+VVGPHP P VR+FQS+IG+E ++Q
Sbjct: 178 VRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPXXVRDFQSVIGEEVKRQ 237
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEF--INDEDVRLIGVEAAGFGLDSGKHAATLAK 175
++E +G PD L+A VG GSNA+GLF F + + +LIGVEAAG GL +G+HAA++
Sbjct: 238 SLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGA 297
Query: 176 GEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAV 235
G+ GV HG+ YLL D +GQI HSV GL+YPGVGPE S+ D G AE+ + TD+EA+
Sbjct: 298 GKRGVLHGSYXYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEAL 357
Query: 236 QAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 288
+ ++ L RLEGI PALE++HA+A+ K+ P VV+N SG GDKDV V
Sbjct: 358 EGFKLLARLEGIIPALESAHAIAYAAKVVPEXDKDQVVVINLSGRGDKDVTEV 410
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 96 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 155
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 156 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 215
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 216 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 275
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 276 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 335
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 336 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
pdb|2CLE|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6)-
Lowf6 Complex
pdb|2CLH|B Chain B, Tryptophan Synthase In Complex With (Naphthalene-2'-
Sulfonyl)-2-Amino-1-Ethylphosphate (F19)
pdb|2CLM|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-
Ethylphosphate (F6f)
pdb|2CLO|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With (Naphthalene-2'-Sulfonyl)-2-Amino-1-Ethylphosphate
(F19)
pdb|2CLF|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6) -
Highf6 Complex
Length = 396
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 95 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 154
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 155 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 214
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 215 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 274
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 275 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 334
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 335 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxy-4- Fluorophenylthio)-Butylphosphonic Acid
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylsulfinyl)- Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Aminophenylthio)- Butylphosphonic Acid
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)-1- Butenylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)- Butylphosphonic Acid
Length = 397
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 96 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 155
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 156 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 215
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 216 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 275
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 276 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 335
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 336 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
Length = 397
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 96 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 155
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 156 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 215
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 216 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 275
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 276 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 335
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 336 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 281 bits (719), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 95 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 154
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 155 VIPVHSGSATLKDACNEALRDWPGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 214
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 215 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 274
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 275 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 334
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 335 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound
Ii
Length = 397
Score = 280 bits (715), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 195/292 (66%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAG HGV ++MG D+E+QS V M+L+GA+
Sbjct: 96 LLAKRMGKSEIIAETGAGNHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 155
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 156 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 215
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 216 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 275
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 276 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 335
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 336 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
TRYPTOPHAN Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 195/292 (66%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 95 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 154
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+ +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 155 VIPVHSGSATLKDLWNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 214
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 215 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 274
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 275 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 334
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 335 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 195/292 (66%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGV ++MG D+E+QS V M+L+GA+
Sbjct: 95 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 154
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+ +W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 155 VIPVHSGSATLKDACNEALADWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 214
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 215 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 274
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 275 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 334
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 335 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex
Length = 397
Score = 277 bits (709), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/292 (46%), Positives = 194/292 (66%), Gaps = 4/292 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A GAG HGV ++MG D+E+QS V M+L+GA+
Sbjct: 96 LLAKRMGKSEIIAEVGAGNHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 155
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 156 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 215
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 216 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 275
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 276 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 335
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 288
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV
Sbjct: 336 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 32/176 (18%)
Query: 123 GGKPDVLLACVGSGSNALGL------FHEF-INDEDVRLIGVEAAGFGLDSGKHAATLAK 175
G PDV VG+ N +H+ + D+ R++G +AAG AA L
Sbjct: 185 GTAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAG--------AAPLVL 236
Query: 176 GEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAV 235
GE V H T + + + P + + F A+D+E +
Sbjct: 237 GE-PVSHPE--------------TIATAIRIGSPASWTSAVEAQQQSKGRFLAASDEEIL 281
Query: 236 QAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVDTVV 289
AY + R+EG+F ++ ++A L K + G+ VV +G G KD DT +
Sbjct: 282 AAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDPDTAL 337
>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
pdb|2F1F|B Chain B, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
Length = 164
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 84 EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVL-LACVGSGSNALG 141
++ Y + V P P + R +G E + +EK K DVL ++ +G G++
Sbjct: 26 QRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHV-- 83
Query: 142 LFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEV 178
+ ++ L+ ++A+G+G D K + +G++
Sbjct: 84 -------EREIMLVKIQASGYGRDEVKRNTEIFRGQI 113
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 230 TDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCP--TLPNGAKVVVNCSGGGDKDVDT 287
TD+E + AY+ L R EGIF ++ A+A + KL L + VV+ +G G KD T
Sbjct: 267 TDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPAT 326
>pdb|3VDI|A Chain A, Structure Of The Fmo Protein From Pelodictyon Phaeum
Length = 367
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 33/132 (25%)
Query: 80 VGNLEKSYYLTGTVVG-------------PHPCPIMVREFQSIIGKET--RKQAMEKWGG 124
VG+ + G+VV P+P + R+F I+ K K +E W G
Sbjct: 106 VGDFSHKFSFEGSVVNMYYYRSDAVRRNVPNPVYMQGRQFHDIMMKVPLDNKDLIETWEG 165
Query: 125 KPDVLLACVGSGSNALGLFHEF---------INDEDVRLIGVEAAGFGLDSGKHAATLAK 175
+ G G N EF IN+ R+ ++ FG++SG+ K
Sbjct: 166 ---FQQSISGGGVNFGDWIREFWFIGPAYTAINEGGQRISPIQVNNFGVESGE------K 216
Query: 176 GEVGVYHGAMSY 187
G VGV S+
Sbjct: 217 GPVGVSRWKFSH 228
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 124 GKPDVLLACVG---SGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGV 180
GK D +++ +G G + LGL DE ++LI ++ + +D+ H KG G
Sbjct: 335 GKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYFVDAHHHQQEQQKGRKGA 394
Query: 181 Y 181
+
Sbjct: 395 F 395
>pdb|2G04|A Chain A, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|B Chain B, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|C Chain C, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|D Chain D, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|E Chain E, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|F Chain F, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
Length = 359
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 113 ETRKQAMEKWGGKPDVLLACVGSGS-NALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAA 171
+T+ QAM + K DVLL C G+ LG+ + + RLI G+G D G A+
Sbjct: 66 KTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQD-GPLAS 124
Query: 172 T 172
T
Sbjct: 125 T 125
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 230 TDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVDT 287
+D E + AY+ + EG+F ++ ++A L KL G V +G G KD DT
Sbjct: 269 SDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDPDT 328
Query: 288 VV 289
+
Sbjct: 329 AI 330
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 27.7 bits (60), Expect = 7.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 117 QAMEKWGGKPDVLLACVGSGSNAL--GLFHEFIND--EDVRLIGVEAAGFGL 164
+++ ++GG + LA G+G+N+ L H ++D +DVR V A GF L
Sbjct: 555 ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVL 606
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 117 QAMEKWGGKPDVLLACVGSGSNAL--GLFHEFIND--EDVRLIGVEAAGFGL 164
+++ ++GG + LA G+G+N+ L H ++D +DVR V A GF L
Sbjct: 544 ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVL 595
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,385,843
Number of Sequences: 62578
Number of extensions: 348870
Number of successful extensions: 990
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 31
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)