Query 022573
Match_columns 295
No_of_seqs 130 out of 1034
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02618 tryptophan synthase, 100.0 1.9E-51 4.2E-56 376.1 29.7 292 2-293 113-407 (410)
2 PRK04346 tryptophan synthase s 100.0 8.8E-51 1.9E-55 371.2 30.1 292 2-293 100-394 (397)
3 PRK13028 tryptophan synthase s 100.0 6.5E-50 1.4E-54 366.0 30.1 292 2-293 104-398 (402)
4 TIGR00263 trpB tryptophan synt 100.0 1.3E-46 2.9E-51 345.5 29.3 289 3-291 93-384 (385)
5 PRK13803 bifunctional phosphor 100.0 2.5E-46 5.5E-51 360.5 30.8 293 2-294 312-607 (610)
6 COG0133 TrpB Tryptophan syntha 100.0 1.6E-46 3.5E-51 321.2 25.8 293 1-293 96-391 (396)
7 PRK13802 bifunctional indole-3 100.0 6.2E-46 1.3E-50 357.1 28.8 291 2-292 373-673 (695)
8 COG1171 IlvA Threonine dehydra 100.0 2.1E-45 4.6E-50 324.7 25.8 253 6-294 72-326 (347)
9 cd06446 Trp-synth_B Tryptophan 100.0 9.1E-45 2E-49 331.9 27.5 285 3-287 77-364 (365)
10 COG0031 CysK Cysteine synthase 100.0 2.3E-44 5.1E-49 312.7 23.7 235 6-286 59-299 (300)
11 PRK08526 threonine dehydratase 100.0 2.3E-42 5.1E-47 318.5 26.4 250 7-294 67-318 (403)
12 PRK12483 threonine dehydratase 100.0 3.3E-42 7.2E-47 324.4 26.3 251 7-294 84-337 (521)
13 TIGR01124 ilvA_2Cterm threonin 100.0 1.1E-41 2.4E-46 321.1 27.0 253 5-294 62-317 (499)
14 PLN02356 phosphateglycerate ki 100.0 1E-41 2.2E-46 312.1 24.0 252 8-290 103-402 (423)
15 TIGR01127 ilvA_1Cterm threonin 100.0 2E-41 4.4E-46 312.3 26.2 253 4-293 43-296 (380)
16 cd06448 L-Ser-dehyd Serine deh 100.0 2.9E-41 6.3E-46 303.1 26.4 258 3-294 43-315 (316)
17 PLN02550 threonine dehydratase 100.0 3E-41 6.5E-46 319.6 26.8 251 6-293 155-408 (591)
18 KOG1250 Threonine/serine dehyd 100.0 9.3E-42 2E-46 299.5 21.1 250 3-289 109-360 (457)
19 PRK07048 serine/threonine dehy 100.0 2.8E-41 6E-46 304.6 24.9 249 7-293 71-320 (321)
20 PRK02991 D-serine dehydratase; 100.0 6.1E-41 1.3E-45 310.7 27.5 261 11-294 159-436 (441)
21 PRK09224 threonine dehydratase 100.0 4.7E-41 1E-45 318.0 26.9 252 6-294 66-320 (504)
22 PLN02970 serine racemase 100.0 6.8E-41 1.5E-45 302.4 26.0 250 6-293 73-327 (328)
23 PRK06110 hypothetical protein; 100.0 6.6E-41 1.4E-45 302.0 25.6 248 8-294 70-318 (322)
24 PRK08813 threonine dehydratase 100.0 6E-41 1.3E-45 302.1 25.2 246 3-293 75-320 (349)
25 TIGR02079 THD1 threonine dehyd 100.0 1.2E-40 2.6E-45 308.4 27.2 250 7-294 63-317 (409)
26 PRK06382 threonine dehydratase 100.0 1.5E-40 3.2E-45 308.2 27.2 247 9-294 74-322 (406)
27 PRK08639 threonine dehydratase 100.0 1.5E-40 3.3E-45 309.1 26.9 249 8-294 73-328 (420)
28 PRK08197 threonine synthase; V 100.0 7.9E-41 1.7E-45 309.0 24.8 257 2-292 121-391 (394)
29 PRK08198 threonine dehydratase 100.0 1.9E-40 4.1E-45 308.0 26.0 250 5-292 67-317 (404)
30 PRK10717 cysteine synthase A; 100.0 1.4E-40 3.1E-45 301.1 24.0 245 10-290 65-317 (330)
31 PRK07591 threonine synthase; V 100.0 3E-40 6.5E-45 306.8 26.6 258 2-292 131-401 (421)
32 PRK08206 diaminopropionate amm 100.0 5.9E-40 1.3E-44 302.7 28.1 256 11-294 118-395 (399)
33 KOG1251 Serine racemase [Signa 100.0 9.8E-41 2.1E-45 276.1 20.0 248 5-291 70-319 (323)
34 PRK08638 threonine dehydratase 100.0 4.6E-40 9.9E-45 296.8 25.7 251 6-293 73-325 (333)
35 TIGR01139 cysK cysteine syntha 100.0 5.6E-40 1.2E-44 293.3 25.0 242 3-287 48-295 (298)
36 PLN02565 cysteine synthase 100.0 4.1E-40 8.9E-45 295.8 23.9 234 10-287 68-305 (322)
37 PRK06608 threonine dehydratase 100.0 1.3E-39 2.8E-44 294.5 25.8 253 3-293 65-320 (338)
38 cd01561 CBS_like CBS_like: Thi 100.0 1.2E-39 2.5E-44 290.4 24.5 239 3-286 44-291 (291)
39 PRK07476 eutB threonine dehydr 100.0 1.7E-39 3.7E-44 292.8 25.7 252 3-293 61-317 (322)
40 TIGR01747 diampropi_NH3ly diam 100.0 3.7E-39 7.9E-44 294.6 27.0 255 8-292 94-374 (376)
41 TIGR02035 D_Ser_am_lyase D-ser 100.0 2.8E-39 6.1E-44 298.4 25.7 259 11-292 154-431 (431)
42 PRK08246 threonine dehydratase 100.0 3.2E-39 6.8E-44 289.3 25.1 243 7-288 67-309 (310)
43 PRK06352 threonine synthase; V 100.0 2.6E-39 5.7E-44 294.3 24.8 248 3-292 70-328 (351)
44 PRK06815 hypothetical protein; 100.0 5.1E-39 1.1E-43 289.1 26.0 246 9-292 69-316 (317)
45 TIGR02991 ectoine_eutB ectoine 100.0 7.1E-39 1.5E-43 287.8 25.7 249 6-293 65-316 (317)
46 TIGR01136 cysKM cysteine synth 100.0 4.3E-39 9.4E-44 287.7 24.1 234 10-287 59-296 (299)
47 PRK06260 threonine synthase; V 100.0 7.4E-39 1.6E-43 296.2 25.7 254 2-289 109-375 (397)
48 PRK07409 threonine synthase; V 100.0 1.2E-38 2.7E-43 290.7 26.7 250 3-293 73-333 (353)
49 PRK06721 threonine synthase; R 100.0 1.4E-38 2.9E-43 289.9 26.8 248 2-290 69-326 (352)
50 PRK11761 cysM cysteine synthas 100.0 4.9E-39 1.1E-43 286.2 22.5 225 10-287 64-291 (296)
51 KOG1395 Tryptophan synthase be 100.0 7.2E-39 1.6E-43 276.9 22.6 294 1-294 164-460 (477)
52 PRK07334 threonine dehydratase 100.0 9.5E-39 2.1E-43 296.0 25.1 247 7-293 70-317 (403)
53 PRK08329 threonine synthase; V 100.0 7.3E-39 1.6E-43 291.1 23.7 239 2-285 98-347 (347)
54 cd01562 Thr-dehyd Threonine de 100.0 1.3E-38 2.9E-43 285.5 24.4 242 4-283 60-303 (304)
55 TIGR01415 trpB_rel pyridoxal-p 100.0 3.2E-38 7E-43 291.4 27.3 276 2-293 111-417 (419)
56 PLN02556 cysteine synthase/L-3 100.0 2.3E-38 4.9E-43 288.6 25.0 233 11-287 113-349 (368)
57 PLN00011 cysteine synthase 100.0 2.8E-38 6E-43 284.8 25.3 235 8-287 69-307 (323)
58 cd06447 D-Ser-dehyd D-Serine d 100.0 3.1E-38 6.7E-43 289.3 24.5 249 11-282 136-401 (404)
59 PLN03013 cysteine synthase 100.0 5.3E-38 1.1E-42 287.8 26.0 235 10-288 176-415 (429)
60 TIGR01138 cysM cysteine syntha 100.0 2.8E-38 6.1E-43 280.7 23.1 225 10-287 60-287 (290)
61 TIGR03528 2_3_DAP_am_ly diamin 100.0 1E-37 2.2E-42 286.8 27.2 253 11-292 115-393 (396)
62 PRK12391 tryptophan synthase s 100.0 1E-37 2.2E-42 288.4 27.1 280 2-293 120-426 (427)
63 PLN02569 threonine synthase 100.0 7.5E-38 1.6E-42 293.2 26.4 251 10-293 188-450 (484)
64 cd01563 Thr-synth_1 Threonine 100.0 5.5E-38 1.2E-42 283.8 24.0 248 3-284 65-324 (324)
65 PRK06450 threonine synthase; V 100.0 1.4E-37 3.1E-42 280.8 24.6 236 3-285 92-338 (338)
66 PRK06381 threonine synthase; V 100.0 3.6E-37 7.8E-42 277.8 25.7 247 2-280 57-317 (319)
67 TIGR01137 cysta_beta cystathio 100.0 6.8E-37 1.5E-41 288.7 23.1 243 10-290 63-311 (454)
68 TIGR03844 cysteate_syn cysteat 100.0 9.1E-37 2E-41 280.5 23.0 260 3-287 112-385 (398)
69 PRK05638 threonine synthase; V 100.0 1.1E-36 2.3E-41 285.3 23.8 241 3-285 107-359 (442)
70 TIGR00260 thrC threonine synth 100.0 1.9E-36 4.1E-41 274.2 22.8 250 3-286 66-328 (328)
71 PRK12390 1-aminocyclopropane-1 100.0 1.7E-36 3.7E-41 275.1 21.1 247 3-280 62-324 (337)
72 TIGR01274 ACC_deam 1-aminocycl 100.0 5.1E-36 1.1E-40 271.8 21.7 259 3-292 61-334 (337)
73 PRK03910 D-cysteine desulfhydr 100.0 4.3E-36 9.3E-41 271.8 20.5 255 3-289 59-326 (331)
74 cd06449 ACCD Aminocyclopropane 100.0 7.3E-36 1.6E-40 267.8 20.3 246 3-280 47-307 (307)
75 KOG1252 Cystathionine beta-syn 100.0 3.3E-36 7.1E-41 260.6 15.3 238 10-290 105-350 (362)
76 TIGR01275 ACC_deam_rel pyridox 100.0 1.1E-34 2.5E-39 260.7 18.8 240 3-280 51-300 (311)
77 KOG1481 Cysteine synthase [Ami 100.0 1.9E-34 4.2E-39 242.8 15.2 259 8-290 99-368 (391)
78 cd00640 Trp-synth-beta_II Tryp 100.0 2.6E-33 5.5E-38 243.6 22.9 199 3-280 42-244 (244)
79 PF00291 PALP: Pyridoxal-phosp 100.0 2.1E-33 4.6E-38 251.9 18.3 241 3-279 51-306 (306)
80 PRK14045 1-aminocyclopropane-1 100.0 3E-32 6.5E-37 246.3 19.4 243 3-280 65-314 (329)
81 COG0498 ThrC Threonine synthas 100.0 2.3E-31 5E-36 242.5 20.5 250 3-290 121-381 (411)
82 COG1350 Predicted alternative 99.9 3.5E-26 7.5E-31 196.9 21.6 277 2-294 121-428 (432)
83 PRK09225 threonine synthase; V 99.9 5.4E-26 1.2E-30 211.7 21.1 251 7-292 129-422 (462)
84 COG2515 Acd 1-aminocyclopropan 99.9 4.1E-26 8.9E-31 195.6 17.9 244 2-280 58-312 (323)
85 cd01560 Thr-synth_2 Threonine 99.9 4.5E-25 9.8E-30 205.7 22.9 254 7-293 131-427 (460)
86 COG3048 DsdA D-serine dehydrat 99.9 3.2E-21 6.9E-26 165.0 18.5 261 11-294 162-441 (443)
87 KOG2616 Pyridoxalphosphate-dep 93.1 0.2 4.2E-06 42.2 5.0 74 216-291 140-213 (266)
88 PF05368 NmrA: NmrA-like famil 88.1 2 4.4E-05 36.4 7.0 52 11-67 2-53 (233)
89 cd06533 Glyco_transf_WecG_TagA 83.3 15 0.00033 29.8 9.6 122 20-157 10-131 (171)
90 PF03808 Glyco_tran_WecB: Glyc 82.5 19 0.00042 29.2 10.0 104 20-139 12-115 (172)
91 PF00106 adh_short: short chai 81.3 19 0.00041 28.3 9.5 72 10-81 2-76 (167)
92 PF00070 Pyr_redox: Pyridine n 80.9 12 0.00025 25.9 7.1 27 16-42 6-32 (80)
93 COG0078 ArgF Ornithine carbamo 79.5 9.1 0.0002 34.1 7.3 57 10-66 155-214 (310)
94 TIGR00696 wecB_tagA_cpsF bacte 77.3 34 0.00073 28.1 9.8 100 21-137 13-112 (177)
95 PRK07109 short chain dehydroge 76.4 59 0.0013 29.3 14.2 72 8-81 8-81 (334)
96 PRK06139 short chain dehydroge 75.3 39 0.00084 30.6 10.6 69 9-79 8-78 (330)
97 TIGR00670 asp_carb_tr aspartat 75.1 13 0.00029 33.3 7.3 47 18-66 162-209 (301)
98 PF00185 OTCace: Aspartate/orn 71.4 15 0.00032 29.5 6.2 58 8-66 3-66 (158)
99 COG1751 Uncharacterized conser 68.9 17 0.00038 28.9 5.7 64 2-66 22-91 (186)
100 PRK12743 oxidoreductase; Provi 68.7 45 0.00098 28.4 9.2 72 10-82 4-77 (256)
101 PF04127 DFP: DNA / pantothena 68.6 35 0.00075 28.2 7.9 64 8-82 19-82 (185)
102 PRK06182 short chain dehydroge 68.6 73 0.0016 27.4 10.6 67 10-82 5-71 (273)
103 PRK05993 short chain dehydroge 66.6 53 0.0011 28.5 9.3 66 10-81 6-71 (277)
104 PRK12481 2-deoxy-D-gluconate 3 66.5 43 0.00094 28.5 8.6 70 9-82 9-80 (251)
105 PRK06128 oxidoreductase; Provi 65.8 75 0.0016 28.0 10.2 73 9-81 56-130 (300)
106 TIGR01316 gltA glutamate synth 64.6 27 0.00059 33.0 7.5 54 10-64 274-329 (449)
107 PRK12828 short chain dehydroge 63.6 85 0.0018 26.0 9.9 70 9-80 8-77 (239)
108 PF01210 NAD_Gly3P_dh_N: NAD-d 63.4 8.3 0.00018 30.8 3.2 26 16-41 6-31 (157)
109 cd08301 alcohol_DH_plants Plan 63.3 39 0.00085 30.7 8.1 49 10-64 190-238 (369)
110 PRK05329 anaerobic glycerol-3- 63.2 1.1E+02 0.0024 28.9 11.1 33 7-41 2-34 (422)
111 PRK07523 gluconate 5-dehydroge 62.8 95 0.0021 26.3 10.2 69 9-79 11-81 (255)
112 PF01262 AlaDh_PNT_C: Alanine 62.6 64 0.0014 25.9 8.4 54 5-65 17-70 (168)
113 PRK05447 1-deoxy-D-xylulose 5- 61.2 1.4E+02 0.0031 27.8 12.3 54 10-66 3-58 (385)
114 PRK05693 short chain dehydroge 60.3 1.1E+02 0.0024 26.3 10.1 66 10-81 3-68 (274)
115 PRK08993 2-deoxy-D-gluconate 3 59.9 81 0.0017 26.8 9.1 69 9-81 11-81 (253)
116 PF13460 NAD_binding_10: NADH( 59.8 52 0.0011 26.3 7.5 47 12-66 2-48 (183)
117 PRK15408 autoinducer 2-binding 59.7 1.4E+02 0.0029 27.1 14.6 44 112-158 197-242 (336)
118 PRK08017 oxidoreductase; Provi 59.2 93 0.002 26.3 9.3 52 10-67 4-55 (256)
119 cd01455 vWA_F11C1-5a_type Von 59.1 27 0.00058 29.1 5.5 47 236-282 75-123 (191)
120 PRK08303 short chain dehydroge 59.1 1.3E+02 0.0027 26.8 10.4 74 9-82 9-92 (305)
121 PF00107 ADH_zinc_N: Zinc-bind 58.9 29 0.00062 26.1 5.5 22 125-146 58-79 (130)
122 PF00107 ADH_zinc_N: Zinc-bind 58.6 37 0.00081 25.4 6.1 41 21-67 3-43 (130)
123 PF03853 YjeF_N: YjeF-related 58.1 54 0.0012 26.5 7.2 59 7-66 25-89 (169)
124 TIGR00561 pntA NAD(P) transhyd 57.5 1.9E+02 0.0041 28.1 12.7 51 9-66 165-215 (511)
125 TIGR03378 glycerol3P_GlpB glyc 57.3 1.5E+02 0.0034 27.9 10.8 31 9-41 2-32 (419)
126 PRK12937 short chain dehydroge 57.1 1.1E+02 0.0025 25.4 10.0 71 10-81 7-79 (245)
127 PRK07666 fabG 3-ketoacyl-(acyl 56.6 1.2E+02 0.0025 25.4 9.9 69 9-79 8-78 (239)
128 PF08659 KR: KR domain; Inter 56.5 1.1E+02 0.0023 24.8 12.1 73 10-82 2-78 (181)
129 PRK12826 3-ketoacyl-(acyl-carr 56.4 1.2E+02 0.0026 25.4 9.9 70 9-80 7-78 (251)
130 PRK06260 threonine synthase; V 56.3 1.7E+02 0.0037 27.2 12.2 36 8-43 218-261 (397)
131 KOG0023 Alcohol dehydrogenase, 56.3 59 0.0013 29.5 7.4 51 17-72 190-240 (360)
132 PRK12831 putative oxidoreducta 56.0 47 0.001 31.6 7.5 53 10-63 283-337 (464)
133 PRK13394 3-hydroxybutyrate deh 55.8 1.3E+02 0.0027 25.5 10.1 57 9-67 8-64 (262)
134 PRK12744 short chain dehydroge 55.7 1.3E+02 0.0028 25.5 9.8 71 10-80 10-84 (257)
135 PRK06483 dihydromonapterin red 55.3 1.1E+02 0.0023 25.6 8.9 67 10-81 4-70 (236)
136 PRK07478 short chain dehydroge 54.9 1.3E+02 0.0028 25.4 10.0 72 9-82 7-80 (254)
137 KOG0025 Zn2+-binding dehydroge 54.2 46 0.00099 29.8 6.3 55 11-68 163-219 (354)
138 cd01012 YcaC_related YcaC rela 54.2 50 0.0011 26.1 6.3 59 4-62 84-146 (157)
139 PRK08416 7-alpha-hydroxysteroi 54.2 1.4E+02 0.003 25.5 9.7 74 8-82 8-84 (260)
140 PLN03050 pyridoxine (pyridoxam 54.0 42 0.00091 29.1 6.2 32 9-41 62-96 (246)
141 PRK06947 glucose-1-dehydrogena 53.8 1.2E+02 0.0027 25.3 9.2 70 10-80 4-75 (248)
142 PRK00779 ornithine carbamoyltr 53.6 52 0.0011 29.5 6.9 57 9-66 154-210 (304)
143 cd08294 leukotriene_B4_DH_like 53.4 48 0.001 29.3 6.8 19 17-35 153-171 (329)
144 PLN02342 ornithine carbamoyltr 53.1 68 0.0015 29.4 7.6 50 15-66 201-252 (348)
145 cd08300 alcohol_DH_class_III c 53.0 85 0.0018 28.6 8.5 48 10-63 189-236 (368)
146 PRK08277 D-mannonate oxidoredu 52.7 1.5E+02 0.0033 25.5 10.1 57 9-67 11-67 (278)
147 PF13407 Peripla_BP_4: Peripla 52.6 1.4E+02 0.0031 25.1 13.3 135 20-156 16-158 (257)
148 TIGR02822 adh_fam_2 zinc-bindi 52.5 44 0.00096 30.0 6.4 40 17-62 174-213 (329)
149 TIGR02825 B4_12hDH leukotriene 52.3 50 0.0011 29.3 6.7 20 17-36 148-167 (325)
150 cd01011 nicotinamidase Nicotin 52.2 42 0.00092 27.7 5.8 37 5-41 135-172 (196)
151 TIGR03366 HpnZ_proposed putati 52.2 56 0.0012 28.5 6.9 48 10-63 123-170 (280)
152 PRK06181 short chain dehydroge 51.9 1.5E+02 0.0032 25.2 9.5 69 11-81 4-74 (263)
153 PRK05866 short chain dehydroge 51.9 1.7E+02 0.0036 25.7 10.2 72 9-82 41-114 (293)
154 PRK07097 gluconate 5-dehydroge 51.8 1.5E+02 0.0033 25.2 15.8 70 9-80 11-82 (265)
155 CHL00194 ycf39 Ycf39; Provisio 51.7 83 0.0018 28.0 8.0 50 11-66 3-52 (317)
156 PRK08192 aspartate carbamoyltr 51.6 60 0.0013 29.6 7.0 47 18-66 171-219 (338)
157 PRK12938 acetyacetyl-CoA reduc 51.6 1.4E+02 0.0031 24.9 9.3 57 9-66 4-60 (246)
158 COG0604 Qor NADPH:quinone redu 51.6 77 0.0017 28.7 7.8 49 10-64 145-193 (326)
159 PRK12939 short chain dehydroge 51.4 1.4E+02 0.0031 24.9 9.5 57 9-67 8-64 (250)
160 PRK14805 ornithine carbamoyltr 51.4 58 0.0013 29.2 6.8 51 15-66 154-208 (302)
161 PRK08862 short chain dehydroge 51.1 1.3E+02 0.0029 25.2 8.9 71 10-82 7-79 (227)
162 PRK11891 aspartate carbamoyltr 50.9 69 0.0015 30.3 7.4 47 18-66 253-301 (429)
163 PRK10669 putative cation:proto 50.6 70 0.0015 31.2 7.9 54 9-69 418-471 (558)
164 cd08230 glucose_DH Glucose deh 50.4 61 0.0013 29.3 7.0 43 16-61 180-222 (355)
165 PRK12823 benD 1,6-dihydroxycyc 50.0 1.6E+02 0.0034 24.9 10.0 72 8-82 8-81 (260)
166 PF02844 GARS_N: Phosphoribosy 49.8 1E+02 0.0022 22.7 7.0 41 216-256 56-97 (100)
167 COG3473 Maleate cis-trans isom 49.8 1.5E+02 0.0032 25.2 8.3 117 5-135 65-189 (238)
168 TIGR01832 kduD 2-deoxy-D-gluco 49.6 1.4E+02 0.0031 25.0 8.9 68 10-81 7-76 (248)
169 PRK15481 transcriptional regul 49.6 1.8E+02 0.0039 27.1 10.3 51 9-66 142-194 (431)
170 PRK07454 short chain dehydroge 49.5 1.5E+02 0.0033 24.7 9.9 71 9-81 7-79 (241)
171 TIGR02415 23BDH acetoin reduct 49.3 1.6E+02 0.0034 24.7 9.8 70 10-81 2-73 (254)
172 PF13450 NAD_binding_8: NAD(P) 49.2 32 0.00069 23.1 3.8 26 16-41 3-28 (68)
173 PRK06114 short chain dehydroge 49.2 1.6E+02 0.0035 24.9 9.8 72 9-81 9-82 (254)
174 PRK12745 3-ketoacyl-(acyl-carr 49.0 1.6E+02 0.0035 24.7 9.7 71 10-81 4-76 (256)
175 PRK05557 fabG 3-ketoacyl-(acyl 48.8 1.6E+02 0.0034 24.5 9.6 58 9-67 6-63 (248)
176 PRK05876 short chain dehydroge 48.8 1.8E+02 0.0039 25.2 10.3 71 9-81 7-79 (275)
177 PRK12771 putative glutamate sy 48.7 64 0.0014 31.5 7.3 56 7-64 137-207 (564)
178 COG0796 MurI Glutamate racemas 48.7 90 0.002 27.5 7.3 69 86-161 33-101 (269)
179 cd08295 double_bond_reductase_ 48.6 61 0.0013 29.0 6.7 21 17-37 161-181 (338)
180 PF01135 PCMT: Protein-L-isoas 48.5 73 0.0016 26.8 6.6 77 84-161 28-107 (209)
181 TIGR02818 adh_III_F_hyde S-(hy 48.2 1E+02 0.0022 28.1 8.2 41 17-62 194-234 (368)
182 PRK07326 short chain dehydroge 48.2 1.6E+02 0.0034 24.4 9.1 31 10-40 8-38 (237)
183 PRK05867 short chain dehydroge 47.9 1.7E+02 0.0037 24.7 10.1 71 9-81 10-82 (253)
184 PRK08936 glucose-1-dehydrogena 47.8 1.7E+02 0.0038 24.8 9.7 56 10-66 9-64 (261)
185 cd08288 MDR_yhdh Yhdh putative 47.8 96 0.0021 27.2 7.8 49 9-63 148-196 (324)
186 PRK07370 enoyl-(acyl carrier p 47.5 1.7E+02 0.0037 25.0 9.1 73 10-82 8-84 (258)
187 PRK12935 acetoacetyl-CoA reduc 47.4 1.7E+02 0.0037 24.5 10.1 72 9-81 7-80 (247)
188 PRK04523 N-acetylornithine car 46.8 1E+02 0.0023 28.0 7.8 47 18-66 185-237 (335)
189 PRK06949 short chain dehydroge 46.6 1.8E+02 0.0038 24.5 9.4 33 9-41 10-42 (258)
190 PF01041 DegT_DnrJ_EryC1: DegT 46.4 48 0.001 30.3 5.7 61 3-67 35-95 (363)
191 PRK07818 dihydrolipoamide dehy 46.1 73 0.0016 30.2 7.1 32 8-40 172-203 (466)
192 PRK08643 acetoin reductase; Va 45.9 1.8E+02 0.004 24.5 9.3 70 10-81 4-75 (256)
193 PF13478 XdhC_C: XdhC Rossmann 45.9 26 0.00056 27.4 3.3 29 12-41 2-30 (136)
194 PF07279 DUF1442: Protein of u 45.8 64 0.0014 27.4 5.7 38 20-59 57-94 (218)
195 COG0026 PurK Phosphoribosylami 45.7 34 0.00073 31.5 4.4 27 16-42 8-34 (375)
196 TIGR00658 orni_carb_tr ornithi 45.6 82 0.0018 28.3 6.9 51 15-66 155-209 (304)
197 cd01015 CSHase N-carbamoylsarc 45.3 68 0.0015 26.0 5.9 38 4-41 110-148 (179)
198 PRK04284 ornithine carbamoyltr 45.2 1.1E+02 0.0023 27.9 7.6 47 18-66 166-217 (332)
199 PLN02827 Alcohol dehydrogenase 44.9 1.3E+02 0.0029 27.5 8.4 41 17-62 202-242 (378)
200 PTZ00331 alpha/beta hydrolase; 44.9 78 0.0017 26.6 6.3 33 6-38 144-177 (212)
201 COG1167 ARO8 Transcriptional r 44.9 1.8E+02 0.0038 27.7 9.4 86 7-100 154-241 (459)
202 PRK06194 hypothetical protein; 44.8 2E+02 0.0044 24.7 10.1 58 9-68 7-64 (287)
203 PRK07832 short chain dehydroge 44.7 1.9E+02 0.0041 24.8 9.0 49 11-61 3-51 (272)
204 PRK08340 glucose-1-dehydrogena 44.6 1.9E+02 0.0042 24.5 9.0 29 11-39 3-31 (259)
205 COG1064 AdhP Zn-dependent alco 44.5 1.3E+02 0.0027 27.6 7.9 54 7-66 165-218 (339)
206 PRK06172 short chain dehydroge 44.5 1.9E+02 0.0041 24.3 10.0 56 9-66 8-63 (253)
207 PLN02740 Alcohol dehydrogenase 44.4 1.3E+02 0.0028 27.5 8.3 43 16-63 206-248 (381)
208 PRK05653 fabG 3-ketoacyl-(acyl 44.4 1.8E+02 0.0039 24.0 9.8 56 10-67 7-62 (246)
209 TIGR03201 dearomat_had 6-hydro 44.3 73 0.0016 28.7 6.5 47 10-63 169-215 (349)
210 PF00890 FAD_binding_2: FAD bi 44.2 35 0.00076 31.6 4.5 30 10-41 2-31 (417)
211 PRK06953 short chain dehydroge 44.1 1.8E+02 0.004 23.9 9.3 60 10-75 3-62 (222)
212 cd08291 ETR_like_1 2-enoyl thi 43.9 93 0.002 27.5 7.1 11 125-135 212-222 (324)
213 PRK07035 short chain dehydroge 43.9 1.9E+02 0.0042 24.2 10.3 72 9-82 9-82 (252)
214 PLN03154 putative allyl alcoho 43.8 76 0.0016 28.7 6.6 10 125-134 228-237 (348)
215 PRK06935 2-deoxy-D-gluconate 3 43.8 2E+02 0.0043 24.3 10.1 70 9-81 16-87 (258)
216 PRK09853 putative selenate red 43.8 85 0.0018 33.2 7.4 55 7-63 539-608 (1019)
217 PRK14804 ornithine carbamoyltr 43.7 99 0.0021 27.8 7.1 33 9-42 155-187 (311)
218 PRK07792 fabG 3-ketoacyl-(acyl 43.7 2.3E+02 0.005 25.0 9.7 59 9-68 13-71 (306)
219 PF00857 Isochorismatase: Isoc 43.6 60 0.0013 25.8 5.3 60 4-63 108-171 (174)
220 PLN02918 pyridoxine (pyridoxam 43.5 73 0.0016 31.1 6.5 52 9-61 137-192 (544)
221 PRK12742 oxidoreductase; Provi 43.4 1.6E+02 0.0034 24.4 8.2 54 9-66 7-60 (237)
222 PRK09730 putative NAD(P)-bindi 43.3 1.9E+02 0.0042 24.0 9.9 69 10-79 3-73 (247)
223 PRK08085 gluconate 5-dehydroge 43.2 2E+02 0.0044 24.2 10.2 71 9-81 10-82 (254)
224 PF13561 adh_short_C2: Enoyl-( 43.2 92 0.002 26.2 6.7 66 16-82 4-69 (241)
225 TIGR01292 TRX_reduct thioredox 43.1 1E+02 0.0022 26.7 7.1 32 10-42 143-174 (300)
226 PRK07494 2-octaprenyl-6-methox 43.0 38 0.00082 31.0 4.5 33 7-41 7-39 (388)
227 cd08289 MDR_yhfp_like Yhfp put 42.9 90 0.002 27.4 6.8 45 10-60 149-193 (326)
228 cd08296 CAD_like Cinnamyl alco 42.4 89 0.0019 27.8 6.8 18 17-34 172-189 (333)
229 PRK02255 putrescine carbamoylt 42.3 1E+02 0.0022 28.1 7.1 54 11-66 157-215 (338)
230 PRK08589 short chain dehydroge 42.3 2.2E+02 0.0048 24.4 10.2 70 10-82 8-79 (272)
231 PRK08213 gluconate 5-dehydroge 42.3 2.1E+02 0.0046 24.2 9.3 71 9-81 13-85 (259)
232 PRK11101 glpA sn-glycerol-3-ph 42.2 39 0.00085 32.9 4.6 33 6-40 5-37 (546)
233 PRK07890 short chain dehydroge 42.1 2.1E+02 0.0045 24.1 9.7 71 10-82 7-79 (258)
234 PTZ00354 alcohol dehydrogenase 41.9 1.8E+02 0.0038 25.5 8.6 49 10-64 143-191 (334)
235 cd08246 crotonyl_coA_red croto 41.9 1E+02 0.0022 28.2 7.3 49 9-63 195-243 (393)
236 PRK11706 TDP-4-oxo-6-deoxy-D-g 41.7 1.2E+02 0.0026 27.8 7.6 61 3-67 41-101 (375)
237 PRK09424 pntA NAD(P) transhydr 41.7 1E+02 0.0022 29.9 7.2 51 8-65 165-215 (509)
238 PRK06057 short chain dehydroge 41.6 2E+02 0.0043 24.3 8.6 67 9-80 8-74 (255)
239 PRK07608 ubiquinone biosynthes 41.5 43 0.00092 30.6 4.6 35 5-41 3-37 (388)
240 PRK07060 short chain dehydroge 41.5 1.6E+02 0.0035 24.5 7.9 54 9-67 10-63 (245)
241 PRK12809 putative oxidoreducta 41.5 86 0.0019 31.3 7.0 56 7-64 310-380 (639)
242 PRK09880 L-idonate 5-dehydroge 41.4 86 0.0019 28.2 6.5 48 10-63 172-219 (343)
243 TIGR03385 CoA_CoA_reduc CoA-di 41.3 1.1E+02 0.0024 28.5 7.4 34 8-42 137-170 (427)
244 PRK07806 short chain dehydroge 41.2 2.1E+02 0.0046 23.9 9.3 57 9-66 7-63 (248)
245 PRK15317 alkyl hydroperoxide r 41.2 46 0.001 32.1 4.9 31 8-40 212-242 (517)
246 PRK12483 threonine dehydratase 41.1 2.8E+02 0.006 27.0 10.1 33 130-163 88-120 (521)
247 PRK08226 short chain dehydroge 41.0 2.2E+02 0.0048 24.1 9.7 70 9-81 7-78 (263)
248 PLN02527 aspartate carbamoyltr 41.0 1.3E+02 0.0028 27.1 7.4 46 19-66 164-211 (306)
249 cd08277 liver_alcohol_DH_like 40.9 1.4E+02 0.003 27.1 7.9 41 16-61 192-232 (365)
250 PRK07576 short chain dehydroge 40.7 2.3E+02 0.005 24.2 9.6 74 5-80 6-81 (264)
251 PRK12266 glpD glycerol-3-phosp 40.6 44 0.00096 32.2 4.7 34 6-41 5-38 (508)
252 cd08256 Zn_ADH2 Alcohol dehydr 40.6 95 0.0021 27.9 6.7 47 10-62 177-223 (350)
253 smart00460 TGc Transglutaminas 40.5 37 0.0008 22.2 3.0 24 17-40 9-32 (68)
254 TIGR01831 fabG_rel 3-oxoacyl-( 40.4 2.1E+02 0.0046 23.7 9.0 54 13-67 3-56 (239)
255 COG1063 Tdh Threonine dehydrog 40.2 2.9E+02 0.0062 25.1 12.7 51 10-66 171-222 (350)
256 PRK13656 trans-2-enoyl-CoA red 40.2 3.2E+02 0.0069 25.6 10.1 33 6-39 39-73 (398)
257 TIGR02964 xanthine_xdhC xanthi 40.2 48 0.001 28.7 4.4 33 8-41 100-132 (246)
258 PRK09754 phenylpropionate diox 40.1 1.1E+02 0.0025 28.2 7.2 32 9-41 145-176 (396)
259 PRK06198 short chain dehydroge 40.1 2.3E+02 0.0049 23.9 10.3 71 9-80 7-79 (260)
260 PRK13376 pyrB bifunctional asp 40.1 1E+02 0.0022 30.0 6.9 47 18-66 186-234 (525)
261 PRK07825 short chain dehydroge 39.8 2.2E+02 0.0047 24.3 8.7 67 10-81 7-74 (273)
262 PF00764 Arginosuc_synth: Argi 39.7 3.2E+02 0.0069 25.5 12.0 55 12-66 1-59 (388)
263 PRK06179 short chain dehydroge 39.6 2.1E+02 0.0045 24.4 8.5 65 10-82 6-70 (270)
264 PRK08217 fabG 3-ketoacyl-(acyl 39.6 2.2E+02 0.0048 23.7 9.9 68 10-79 7-76 (253)
265 PRK06847 hypothetical protein; 39.6 51 0.0011 30.0 4.8 29 10-39 6-34 (375)
266 TIGR01292 TRX_reduct thioredox 39.5 51 0.0011 28.6 4.6 30 9-40 2-31 (300)
267 cd08297 CAD3 Cinnamyl alcohol 39.4 1.3E+02 0.0028 26.8 7.3 21 17-37 175-195 (341)
268 PRK06115 dihydrolipoamide dehy 39.4 1.1E+02 0.0023 29.1 7.1 32 8-40 174-205 (466)
269 cd08243 quinone_oxidoreductase 39.2 1.1E+02 0.0025 26.5 6.9 21 17-37 152-172 (320)
270 PRK02102 ornithine carbamoyltr 39.2 1.2E+02 0.0027 27.5 7.0 47 19-66 167-217 (331)
271 PF02254 TrkA_N: TrkA-N domain 39.2 1.5E+02 0.0033 21.6 7.6 51 12-69 2-52 (116)
272 PRK09291 short chain dehydroge 39.0 94 0.002 26.2 6.1 31 11-41 5-35 (257)
273 PRK06185 hypothetical protein; 38.9 51 0.0011 30.4 4.7 35 5-41 4-38 (407)
274 cd05280 MDR_yhdh_yhfp Yhdh and 38.9 1.2E+02 0.0027 26.4 7.1 47 10-62 149-195 (325)
275 PRK08063 enoyl-(acyl carrier p 38.9 2.3E+02 0.005 23.6 9.4 57 10-67 6-62 (250)
276 PF00091 Tubulin: Tubulin/FtsZ 38.8 66 0.0014 27.1 5.0 49 113-161 109-165 (216)
277 PF02737 3HCDH_N: 3-hydroxyacy 38.7 44 0.00094 27.3 3.7 131 16-161 6-139 (180)
278 cd00401 AdoHcyase S-adenosyl-L 38.7 90 0.0019 29.4 6.2 46 10-62 204-249 (413)
279 COG0300 DltE Short-chain dehyd 38.6 2.8E+02 0.006 24.4 8.9 59 7-68 6-65 (265)
280 PRK08261 fabG 3-ketoacyl-(acyl 38.6 3.1E+02 0.0066 25.7 10.0 69 10-81 212-280 (450)
281 KOG1201 Hydroxysteroid 17-beta 38.5 2.9E+02 0.0064 24.7 10.4 71 9-82 39-111 (300)
282 PRK07677 short chain dehydroge 38.5 2.4E+02 0.0052 23.7 9.4 69 11-81 4-74 (252)
283 COG1214 Inactive homolog of me 38.5 43 0.00094 28.4 3.8 51 111-162 41-100 (220)
284 PRK12810 gltD glutamate syntha 38.4 1.2E+02 0.0027 28.8 7.3 53 10-63 145-212 (471)
285 PRK10309 galactitol-1-phosphat 38.4 1.1E+02 0.0024 27.4 6.8 40 17-61 169-208 (347)
286 cd08274 MDR9 Medium chain dehy 38.3 1.3E+02 0.0027 26.8 7.1 44 11-61 181-224 (350)
287 PRK04965 NADH:flavorubredoxin 38.3 1.3E+02 0.0027 27.6 7.2 33 9-42 142-174 (377)
288 cd08293 PTGR2 Prostaglandin re 38.1 1.3E+02 0.0028 26.8 7.1 16 18-33 165-180 (345)
289 cd08242 MDR_like Medium chain 38.1 1.1E+02 0.0023 27.0 6.5 17 18-34 165-181 (319)
290 cd06318 PBP1_ABC_sugar_binding 38.0 2.5E+02 0.0055 23.8 11.5 112 20-132 17-130 (282)
291 PRK07791 short chain dehydroge 38.0 2.7E+02 0.0059 24.2 9.9 73 10-82 8-89 (286)
292 PRK09126 hypothetical protein; 37.8 51 0.0011 30.2 4.5 30 8-39 4-33 (392)
293 PLN03049 pyridoxine (pyridoxam 37.7 1.1E+02 0.0023 29.4 6.6 52 9-61 61-116 (462)
294 TIGR01318 gltD_gamma_fam gluta 37.6 1.1E+02 0.0024 29.1 6.9 55 7-63 141-210 (467)
295 TIGR01377 soxA_mon sarcosine o 37.6 52 0.0011 29.9 4.5 30 9-40 2-31 (380)
296 PF13738 Pyr_redox_3: Pyridine 37.5 48 0.001 27.0 3.9 25 16-40 4-29 (203)
297 KOG2862 Alanine-glyoxylate ami 37.5 2.1E+02 0.0046 26.0 7.9 78 9-91 69-150 (385)
298 PRK06113 7-alpha-hydroxysteroi 37.5 2.5E+02 0.0055 23.6 10.0 57 8-66 11-67 (255)
299 PLN02464 glycerol-3-phosphate 37.4 51 0.0011 32.8 4.6 32 7-40 71-102 (627)
300 TIGR03316 ygeW probable carbam 37.3 1.7E+02 0.0037 27.0 7.6 46 19-66 188-238 (357)
301 PRK08274 tricarballylate dehyd 37.1 53 0.0012 31.1 4.6 31 7-39 4-34 (466)
302 PRK06079 enoyl-(acyl carrier p 37.1 2.4E+02 0.0052 23.9 8.4 33 7-40 7-41 (252)
303 PF02887 PK_C: Pyruvate kinase 37.1 43 0.00093 25.1 3.2 22 4-25 13-34 (117)
304 PRK12825 fabG 3-ketoacyl-(acyl 37.0 2.4E+02 0.0052 23.3 9.6 57 10-67 8-64 (249)
305 PF12831 FAD_oxidored: FAD dep 37.0 46 0.001 31.3 4.1 30 11-41 2-31 (428)
306 cd08270 MDR4 Medium chain dehy 36.8 1.4E+02 0.0031 25.8 7.1 25 11-35 136-160 (305)
307 PRK07573 sdhA succinate dehydr 36.8 54 0.0012 32.7 4.7 32 6-39 34-65 (640)
308 cd08281 liver_ADH_like1 Zinc-d 36.7 1.1E+02 0.0024 27.9 6.5 18 17-34 200-217 (371)
309 TIGR01751 crot-CoA-red crotony 36.6 1.2E+02 0.0026 28.0 6.7 50 9-64 191-240 (398)
310 PRK13369 glycerol-3-phosphate 36.5 59 0.0013 31.3 4.8 33 7-41 6-38 (502)
311 PRK12384 sorbitol-6-phosphate 36.4 2.6E+02 0.0057 23.5 8.8 31 10-40 4-34 (259)
312 PRK06124 gluconate 5-dehydroge 36.4 2.6E+02 0.0056 23.5 10.3 71 9-81 12-84 (256)
313 TIGR01317 GOGAT_sm_gam glutama 36.4 1.3E+02 0.0028 28.8 7.1 53 10-63 145-212 (485)
314 PRK12562 ornithine carbamoyltr 36.4 1.5E+02 0.0033 27.0 7.2 47 19-66 168-218 (334)
315 PRK08306 dipicolinate synthase 36.3 1.4E+02 0.003 26.6 6.9 41 16-62 159-199 (296)
316 PRK07121 hypothetical protein; 36.2 57 0.0012 31.2 4.7 32 6-39 19-50 (492)
317 COG1759 5-formaminoimidazole-4 36.1 1.9E+02 0.0042 26.2 7.4 68 16-92 23-93 (361)
318 PRK06481 fumarate reductase fl 36.1 60 0.0013 31.3 4.8 31 7-39 61-91 (506)
319 PRK12778 putative bifunctional 36.0 1.5E+02 0.0032 30.3 7.8 53 10-63 572-627 (752)
320 COG3959 Transketolase, N-termi 35.9 2.8E+02 0.0062 23.8 8.8 21 20-40 127-147 (243)
321 PRK08773 2-octaprenyl-3-methyl 35.9 56 0.0012 30.0 4.5 34 5-40 4-37 (392)
322 PRK08849 2-octaprenyl-3-methyl 35.7 58 0.0013 29.9 4.5 31 8-40 4-34 (384)
323 PRK12769 putative oxidoreducta 35.6 1.2E+02 0.0025 30.4 6.9 55 7-63 327-396 (654)
324 PLN02178 cinnamyl-alcohol dehy 35.5 1.1E+02 0.0023 28.2 6.2 18 17-34 187-204 (375)
325 TIGR02819 fdhA_non_GSH formald 35.5 1.2E+02 0.0025 28.2 6.5 41 16-61 193-233 (393)
326 PF11814 DUF3335: Peptidase_C3 35.4 91 0.002 26.3 5.1 25 18-42 53-77 (207)
327 PF00670 AdoHcyase_NAD: S-aden 35.4 68 0.0015 25.9 4.2 24 16-39 30-53 (162)
328 PF01134 GIDA: Glucose inhibit 35.3 56 0.0012 30.5 4.3 25 16-40 6-30 (392)
329 PRK06463 fabG 3-ketoacyl-(acyl 35.2 2.7E+02 0.0059 23.4 10.4 69 9-82 8-76 (255)
330 PRK14694 putative mercuric red 35.2 1.5E+02 0.0032 28.2 7.3 33 8-41 178-210 (468)
331 PF00732 GMC_oxred_N: GMC oxid 35.2 27 0.00058 30.6 2.1 35 126-162 1-35 (296)
332 PRK05249 soluble pyridine nucl 35.0 1.5E+02 0.0033 27.9 7.4 33 8-41 175-207 (461)
333 cd08239 THR_DH_like L-threonin 35.0 1.2E+02 0.0027 26.9 6.5 18 17-34 172-189 (339)
334 PF12000 Glyco_trans_4_3: Gkyc 34.9 84 0.0018 25.6 4.8 41 111-157 53-94 (171)
335 TIGR01830 3oxo_ACP_reduc 3-oxo 34.8 2.6E+02 0.0056 23.0 8.1 54 13-67 3-56 (239)
336 TIGR03140 AhpF alkyl hydropero 34.7 66 0.0014 31.0 4.9 31 8-40 213-243 (515)
337 PRK07251 pyridine nucleotide-d 34.7 1.3E+02 0.0029 28.1 6.8 33 8-41 157-189 (438)
338 PRK08010 pyridine nucleotide-d 34.6 64 0.0014 30.3 4.7 31 8-40 4-34 (441)
339 TIGR03451 mycoS_dep_FDH mycoth 34.6 1.4E+02 0.003 27.0 6.8 18 17-34 185-202 (358)
340 PTZ00187 succinyl-CoA syntheta 34.5 3.5E+02 0.0076 24.5 10.5 140 7-160 88-233 (317)
341 TIGR00292 thiazole biosynthesi 34.5 71 0.0015 27.7 4.6 31 7-39 21-51 (254)
342 PRK01438 murD UDP-N-acetylmura 34.3 1.5E+02 0.0033 28.1 7.3 51 10-62 18-68 (480)
343 COG0062 Uncharacterized conser 34.2 1.7E+02 0.0037 24.6 6.6 34 9-42 51-86 (203)
344 PRK06924 short chain dehydroge 34.0 2.3E+02 0.005 23.7 7.8 31 10-40 3-33 (251)
345 COG0623 FabI Enoyl-[acyl-carri 34.0 2.6E+02 0.0057 24.2 7.6 32 51-84 25-56 (259)
346 PRK05872 short chain dehydroge 33.9 3.2E+02 0.0068 23.9 8.8 31 9-39 10-40 (296)
347 TIGR02817 adh_fam_1 zinc-bindi 33.8 1.3E+02 0.0029 26.5 6.5 22 17-38 158-180 (336)
348 cd08299 alcohol_DH_class_I_II_ 33.8 2.3E+02 0.0049 25.9 8.1 45 10-60 193-237 (373)
349 PRK14727 putative mercuric red 33.8 1.6E+02 0.0034 28.1 7.2 33 8-41 188-220 (479)
350 COG2236 Predicted phosphoribos 33.7 1.4E+02 0.0031 24.8 6.0 48 111-159 16-63 (192)
351 PF07755 DUF1611: Protein of u 33.7 1.5E+02 0.0032 26.6 6.5 110 5-135 109-224 (301)
352 PRK03659 glutathione-regulated 33.7 2E+02 0.0043 28.5 8.0 55 9-70 401-455 (601)
353 PRK12842 putative succinate de 33.6 68 0.0015 31.5 4.8 33 4-38 6-38 (574)
354 cd08292 ETR_like_2 2-enoyl thi 33.6 1.5E+02 0.0032 26.0 6.7 11 125-135 208-218 (324)
355 TIGR03845 sulfopyru_alph sulfo 33.5 2.5E+02 0.0053 22.4 7.6 22 18-39 70-91 (157)
356 PTZ00323 NAD+ synthase; Provis 33.5 1.5E+02 0.0032 26.5 6.5 63 5-67 43-114 (294)
357 PRK03515 ornithine carbamoyltr 33.4 1.7E+02 0.0036 26.8 6.9 48 19-66 168-218 (336)
358 TIGR02032 GG-red-SF geranylger 33.4 70 0.0015 27.6 4.5 31 9-41 2-32 (295)
359 PRK12837 3-ketosteroid-delta-1 33.3 69 0.0015 30.9 4.8 32 5-39 5-36 (513)
360 PRK07074 short chain dehydroge 33.2 2.9E+02 0.0064 23.2 8.5 30 11-40 5-34 (257)
361 TIGR01421 gluta_reduc_1 glutat 33.1 71 0.0015 30.2 4.7 30 8-39 3-32 (450)
362 PRK11749 dihydropyrimidine deh 33.0 1.9E+02 0.004 27.4 7.6 54 9-63 274-330 (457)
363 PRK13512 coenzyme A disulfide 33.0 1.7E+02 0.0037 27.4 7.3 33 8-41 148-180 (438)
364 TIGR01421 gluta_reduc_1 glutat 32.9 1.7E+02 0.0037 27.6 7.3 33 8-41 166-198 (450)
365 cd08233 butanediol_DH_like (2R 32.9 1.5E+02 0.0032 26.6 6.6 19 126-144 242-260 (351)
366 PRK05565 fabG 3-ketoacyl-(acyl 32.8 2.9E+02 0.0062 22.9 9.5 71 10-81 7-79 (247)
367 PLN02565 cysteine synthase 32.7 3.7E+02 0.008 24.2 13.4 32 248-279 177-208 (322)
368 cd01561 CBS_like CBS_like: Thi 32.7 3.4E+02 0.0074 23.8 11.2 37 7-43 160-198 (291)
369 PF02826 2-Hacid_dh_C: D-isome 32.7 92 0.002 25.2 4.8 27 16-42 43-69 (178)
370 PRK09134 short chain dehydroge 32.5 3.1E+02 0.0066 23.2 9.5 56 10-66 11-66 (258)
371 PRK07200 aspartate/ornithine c 32.4 2.6E+02 0.0056 26.2 8.1 46 19-66 205-255 (395)
372 TIGR01124 ilvA_2Cterm threonin 32.3 4.7E+02 0.01 25.3 10.1 35 127-163 66-100 (499)
373 PRK05976 dihydrolipoamide dehy 32.2 1.6E+02 0.0034 28.0 7.0 33 8-41 180-212 (472)
374 COG3367 Uncharacterized conser 32.1 2.1E+02 0.0046 25.9 7.1 39 4-42 144-187 (339)
375 PF13561 adh_short_C2: Enoyl-( 31.9 2.2E+02 0.0047 23.9 7.2 72 52-137 14-85 (241)
376 PRK07231 fabG 3-ketoacyl-(acyl 31.9 3E+02 0.0065 22.9 9.3 32 10-41 7-38 (251)
377 PRK12429 3-hydroxybutyrate deh 31.9 3E+02 0.0066 22.9 10.0 69 10-80 6-76 (258)
378 PRK08227 autoinducer 2 aldolas 31.8 3.1E+02 0.0067 24.1 8.1 72 3-75 103-187 (264)
379 PF01494 FAD_binding_3: FAD bi 31.8 65 0.0014 28.5 4.1 30 11-41 4-33 (356)
380 PRK06370 mercuric reductase; V 31.8 1.9E+02 0.0042 27.3 7.5 33 8-41 171-203 (463)
381 KOG1468 Predicted translation 31.6 86 0.0019 27.7 4.4 42 20-68 255-296 (354)
382 PRK15317 alkyl hydroperoxide r 31.6 1.7E+02 0.0037 28.2 7.1 32 10-42 353-384 (517)
383 cd01013 isochorismatase Isocho 31.5 1.5E+02 0.0032 24.7 5.9 36 5-40 139-175 (203)
384 PRK07023 short chain dehydroge 31.5 1.4E+02 0.003 25.0 5.9 49 11-66 4-52 (243)
385 PRK06123 short chain dehydroge 31.5 3.1E+02 0.0066 22.8 9.4 71 10-81 4-76 (248)
386 PRK08642 fabG 3-ketoacyl-(acyl 31.5 3.1E+02 0.0067 22.9 8.3 31 10-40 7-37 (253)
387 cd01563 Thr-synth_1 Threonine 31.4 3.8E+02 0.0082 23.9 13.4 37 7-43 171-215 (324)
388 TIGR00521 coaBC_dfp phosphopan 31.4 73 0.0016 29.7 4.4 26 16-41 209-234 (390)
389 PRK06077 fabG 3-ketoacyl-(acyl 31.2 3.1E+02 0.0067 22.8 10.0 57 9-66 7-63 (252)
390 PRK07985 oxidoreductase; Provi 31.2 3.6E+02 0.0078 23.6 14.3 73 9-81 50-124 (294)
391 PRK12834 putative FAD-binding 31.1 73 0.0016 31.0 4.6 32 6-39 3-34 (549)
392 PRK07102 short chain dehydroge 31.1 3.1E+02 0.0068 22.8 8.5 32 10-41 3-34 (243)
393 cd08244 MDR_enoyl_red Possible 31.1 2.1E+02 0.0045 25.0 7.2 11 125-135 211-221 (324)
394 TIGR00290 MJ0570_dom MJ0570-re 31.0 3.4E+02 0.0073 23.2 10.5 95 25-137 51-146 (223)
395 PRK03562 glutathione-regulated 31.0 2.3E+02 0.0049 28.3 8.0 57 8-71 400-456 (621)
396 PRK12859 3-ketoacyl-(acyl-carr 31.0 3.3E+02 0.0071 23.0 15.5 75 7-82 6-93 (256)
397 PRK07057 sdhA succinate dehydr 30.8 78 0.0017 31.3 4.7 32 6-39 11-42 (591)
398 PRK12844 3-ketosteroid-delta-1 30.8 81 0.0018 30.9 4.8 33 6-40 5-37 (557)
399 PRK10015 oxidoreductase; Provi 30.7 80 0.0017 29.7 4.6 31 7-39 5-35 (429)
400 TIGR02823 oxido_YhdH putative 30.7 1.8E+02 0.0039 25.5 6.7 29 10-38 148-176 (323)
401 PRK07538 hypothetical protein; 30.7 77 0.0017 29.4 4.5 29 11-40 3-31 (413)
402 PRK05714 2-octaprenyl-3-methyl 30.6 70 0.0015 29.5 4.2 30 8-39 3-32 (405)
403 PRK07814 short chain dehydroge 30.6 3.4E+02 0.0073 23.1 10.0 71 9-81 11-83 (263)
404 PRK09224 threonine dehydratase 30.4 5E+02 0.011 25.1 10.0 33 130-163 71-103 (504)
405 PRK12779 putative bifunctional 30.4 1.8E+02 0.004 30.6 7.5 31 10-41 449-479 (944)
406 PRK05976 dihydrolipoamide dehy 30.3 81 0.0018 30.0 4.6 32 7-40 4-35 (472)
407 PRK05717 oxidoreductase; Valid 30.3 3.3E+02 0.0072 22.9 8.2 31 9-39 11-41 (255)
408 PRK08329 threonine synthase; V 30.3 4.2E+02 0.0091 24.1 12.5 36 7-42 204-247 (347)
409 PRK06753 hypothetical protein; 30.2 81 0.0018 28.6 4.5 28 11-39 3-30 (373)
410 PRK12831 putative oxidoreducta 30.2 82 0.0018 30.0 4.6 32 6-39 139-170 (464)
411 TIGR02053 MerA mercuric reduct 30.2 2E+02 0.0043 27.2 7.3 33 8-41 166-198 (463)
412 PRK08010 pyridine nucleotide-d 30.1 1.9E+02 0.0041 27.1 7.0 33 8-41 158-190 (441)
413 PF02254 TrkA_N: TrkA-N domain 30.1 1.3E+02 0.0028 22.0 4.9 56 6-65 61-116 (116)
414 PRK05579 bifunctional phosphop 30.0 79 0.0017 29.6 4.4 26 16-41 212-237 (399)
415 PRK02610 histidinol-phosphate 30.0 2.8E+02 0.0061 25.2 8.1 55 7-66 90-145 (374)
416 PRK01713 ornithine carbamoyltr 29.9 2.1E+02 0.0046 26.0 7.0 48 19-66 168-218 (334)
417 TIGR03725 bact_YeaZ universal 29.9 91 0.002 25.9 4.4 48 114-162 40-96 (202)
418 PRK12779 putative bifunctional 29.9 79 0.0017 33.2 4.8 55 6-62 305-374 (944)
419 PRK05192 tRNA uridine 5-carbox 29.8 87 0.0019 31.1 4.7 33 7-41 4-36 (618)
420 TIGR02360 pbenz_hydroxyl 4-hyd 29.8 87 0.0019 28.9 4.6 32 8-41 3-34 (390)
421 PRK11609 nicotinamidase/pyrazi 29.8 1.9E+02 0.0042 24.0 6.4 60 4-63 138-203 (212)
422 PRK07803 sdhA succinate dehydr 29.8 76 0.0016 31.6 4.4 32 6-39 7-38 (626)
423 TIGR01350 lipoamide_DH dihydro 29.7 1.9E+02 0.0041 27.2 7.1 33 8-41 170-202 (461)
424 TIGR01438 TGR thioredoxin and 29.7 2E+02 0.0042 27.6 7.1 33 8-41 180-212 (484)
425 PRK08020 ubiF 2-octaprenyl-3-m 29.7 74 0.0016 29.1 4.2 31 8-40 6-36 (391)
426 PF01266 DAO: FAD dependent ox 29.6 80 0.0017 27.9 4.3 26 16-41 6-31 (358)
427 cd08285 NADP_ADH NADP(H)-depen 29.6 1.9E+02 0.004 25.9 6.7 18 17-34 175-192 (351)
428 PRK07843 3-ketosteroid-delta-1 29.5 95 0.0021 30.4 5.0 34 5-40 5-38 (557)
429 PRK15408 autoinducer 2-binding 29.5 4.2E+02 0.0092 23.8 15.6 147 12-161 28-190 (336)
430 PLN02927 antheraxanthin epoxid 29.4 87 0.0019 31.5 4.8 31 9-40 82-112 (668)
431 PRK08626 fumarate reductase fl 29.4 77 0.0017 31.8 4.4 33 5-39 3-35 (657)
432 TIGR01988 Ubi-OHases Ubiquinon 29.3 75 0.0016 28.8 4.1 26 16-41 6-31 (385)
433 PRK12770 putative glutamate sy 29.3 2.3E+02 0.005 25.6 7.3 54 10-64 174-230 (352)
434 TIGR01963 PHB_DH 3-hydroxybuty 29.3 3.4E+02 0.0073 22.6 9.4 54 11-66 4-57 (255)
435 PRK06912 acoL dihydrolipoamide 29.2 1.8E+02 0.0039 27.5 6.8 33 8-41 170-202 (458)
436 PRK14727 putative mercuric red 29.2 95 0.002 29.6 4.9 34 4-39 13-46 (479)
437 TIGR03206 benzo_BadH 2-hydroxy 29.2 3.4E+02 0.0073 22.6 9.5 68 11-80 6-75 (250)
438 PRK06327 dihydrolipoamide dehy 29.1 1.9E+02 0.0042 27.5 7.0 33 8-41 183-215 (475)
439 PRK14694 putative mercuric red 29.1 94 0.002 29.5 4.8 34 4-39 3-36 (468)
440 cd01078 NAD_bind_H4MPT_DH NADP 29.1 3.1E+02 0.0068 22.2 8.4 17 17-33 37-53 (194)
441 PRK06452 sdhA succinate dehydr 29.1 88 0.0019 30.7 4.7 32 6-39 4-35 (566)
442 TIGR02023 BchP-ChlP geranylger 29.0 87 0.0019 28.8 4.5 30 9-40 2-31 (388)
443 PLN00141 Tic62-NAD(P)-related 29.0 1.2E+02 0.0026 25.8 5.1 34 8-41 17-50 (251)
444 PRK04176 ribulose-1,5-biphosph 29.0 95 0.0021 27.0 4.5 32 7-40 25-56 (257)
445 PRK05786 fabG 3-ketoacyl-(acyl 29.0 3.3E+02 0.0072 22.4 9.5 32 10-41 7-38 (238)
446 PLN02586 probable cinnamyl alc 29.0 1.7E+02 0.0037 26.6 6.4 12 126-137 248-259 (360)
447 TIGR03649 ergot_EASG ergot alk 28.8 1.2E+02 0.0026 26.3 5.2 30 12-41 3-32 (285)
448 PRK06171 sorbitol-6-phosphate 28.8 3.6E+02 0.0078 22.8 8.4 33 9-41 10-42 (266)
449 TIGR01470 cysG_Nterm siroheme 28.8 2.4E+02 0.0051 23.6 6.7 35 7-43 9-43 (205)
450 PRK08265 short chain dehydroge 28.7 3.6E+02 0.0079 22.8 9.1 69 9-82 7-77 (261)
451 COG4566 TtrR Response regulato 28.7 1.1E+02 0.0025 25.4 4.5 35 226-260 7-43 (202)
452 PRK08013 oxidoreductase; Provi 28.7 88 0.0019 28.9 4.5 32 8-41 4-35 (400)
453 COG1926 Predicted phosphoribos 28.6 3.7E+02 0.008 22.9 9.0 52 111-163 11-62 (220)
454 cd08175 G1PDH Glycerol-1-phosp 28.6 3.7E+02 0.0079 24.4 8.5 34 125-160 80-113 (348)
455 cd08287 FDH_like_ADH3 formalde 28.6 1.9E+02 0.0042 25.6 6.7 23 17-39 177-199 (345)
456 TIGR01829 AcAcCoA_reduct aceto 28.6 3.4E+02 0.0073 22.4 9.5 56 11-67 3-58 (242)
457 TIGR00289 conserved hypothetic 28.5 3.7E+02 0.0081 22.9 9.5 61 22-82 48-109 (222)
458 PRK13748 putative mercuric red 28.5 2.1E+02 0.0045 27.8 7.2 33 8-41 270-302 (561)
459 KOG0634 Aromatic amino acid am 28.5 3.3E+02 0.0071 25.9 7.9 87 32-132 146-242 (472)
460 cd08290 ETR 2-enoyl thioester 28.5 2E+02 0.0043 25.5 6.7 23 17-39 156-178 (341)
461 PRK13984 putative oxidoreducta 28.5 1.6E+02 0.0035 29.0 6.5 54 9-63 284-352 (604)
462 PRK05732 2-octaprenyl-6-methox 28.5 87 0.0019 28.6 4.4 31 8-40 4-37 (395)
463 cd08250 Mgc45594_like Mgc45594 28.5 2E+02 0.0044 25.2 6.7 11 125-135 207-217 (329)
464 PRK00856 pyrB aspartate carbam 28.4 95 0.0021 27.9 4.4 25 18-42 168-192 (305)
465 PRK12814 putative NADPH-depend 28.3 2.2E+02 0.0049 28.4 7.5 54 10-64 195-263 (652)
466 PRK12746 short chain dehydroge 28.3 3.5E+02 0.0077 22.6 9.1 57 9-66 7-63 (254)
467 PRK08163 salicylate hydroxylas 28.3 95 0.002 28.4 4.6 30 11-41 7-36 (396)
468 COG2242 CobL Precorrin-6B meth 28.2 1.6E+02 0.0035 24.4 5.4 50 112-162 20-69 (187)
469 PRK05599 hypothetical protein; 28.2 3.6E+02 0.0079 22.7 8.5 68 11-81 3-73 (246)
470 TIGR03315 Se_ygfK putative sel 28.2 92 0.002 33.0 4.8 31 8-40 538-568 (1012)
471 PRK08594 enoyl-(acyl carrier p 28.1 3.8E+02 0.0081 22.8 8.3 32 7-39 7-40 (257)
472 cd05288 PGDH Prostaglandin deh 28.0 2.2E+02 0.0047 25.0 6.8 11 125-135 214-224 (329)
473 PRK10754 quinone oxidoreductas 27.9 2.4E+02 0.0053 24.7 7.1 17 18-34 151-167 (327)
474 PRK07201 short chain dehydroge 27.9 5.2E+02 0.011 25.5 10.1 71 10-82 373-445 (657)
475 cd08298 CAD2 Cinnamyl alcohol 27.8 2E+02 0.0044 25.2 6.6 22 17-38 176-197 (329)
476 PRK06138 short chain dehydroge 27.7 3.6E+02 0.0078 22.4 9.7 70 9-81 6-77 (252)
477 PRK13982 bifunctional SbtC-lik 27.7 2.8E+02 0.006 26.7 7.6 47 11-66 275-321 (475)
478 TIGR01813 flavo_cyto_c flavocy 27.7 89 0.0019 29.2 4.4 24 16-39 6-30 (439)
479 cd08245 CAD Cinnamyl alcohol d 27.7 2E+02 0.0044 25.2 6.6 18 18-35 172-189 (330)
480 PRK06184 hypothetical protein; 27.6 91 0.002 29.9 4.5 30 9-40 5-34 (502)
481 PRK06370 mercuric reductase; V 27.6 90 0.002 29.5 4.4 31 8-40 6-36 (463)
482 PRK13942 protein-L-isoaspartat 27.5 2E+02 0.0044 24.0 6.1 52 111-162 61-112 (212)
483 cd08231 MDR_TM0436_like Hypoth 27.5 1.9E+02 0.0041 26.0 6.4 17 17-33 186-202 (361)
484 cd05188 MDR Medium chain reduc 27.5 1.8E+02 0.0039 24.3 6.0 11 125-135 201-211 (271)
485 PRK06116 glutathione reductase 27.4 1E+02 0.0022 29.0 4.7 32 7-40 4-35 (450)
486 PF09989 DUF2229: CoA enzyme a 27.4 1.4E+02 0.0029 25.5 5.0 24 52-75 19-42 (221)
487 PRK14619 NAD(P)H-dependent gly 27.4 1.8E+02 0.0038 25.9 6.1 51 8-66 5-55 (308)
488 PRK15451 tRNA cmo(5)U34 methyl 27.4 2E+02 0.0043 24.6 6.2 36 126-162 58-93 (247)
489 PRK07775 short chain dehydroge 27.3 4E+02 0.0086 22.8 9.7 56 9-66 11-66 (274)
490 PRK10157 putative oxidoreducta 27.3 1E+02 0.0022 29.0 4.7 32 7-40 5-36 (428)
491 PRK06617 2-octaprenyl-6-methox 27.2 85 0.0019 28.7 4.1 28 11-39 4-31 (374)
492 PF00391 PEP-utilizers: PEP-ut 27.1 66 0.0014 22.3 2.6 35 5-41 28-62 (80)
493 PRK03692 putative UDP-N-acetyl 27.1 4.1E+02 0.0089 22.9 9.9 99 21-137 69-169 (243)
494 PTZ00052 thioredoxin reductase 27.1 2.2E+02 0.0048 27.4 7.0 32 8-40 182-213 (499)
495 PRK05868 hypothetical protein; 27.1 1.1E+02 0.0023 28.1 4.7 28 11-39 4-31 (372)
496 PRK09564 coenzyme A disulfide 27.1 2.5E+02 0.0054 26.2 7.3 33 8-41 149-181 (444)
497 PRK10262 thioredoxin reductase 27.0 1.1E+02 0.0024 27.1 4.8 30 7-38 6-35 (321)
498 PRK05479 ketol-acid reductoiso 27.0 1.5E+02 0.0033 27.0 5.5 41 16-61 24-64 (330)
499 cd01994 Alpha_ANH_like_IV This 26.9 3.6E+02 0.0079 22.2 10.1 22 15-36 6-27 (194)
500 PF00731 AIRC: AIR carboxylase 26.9 1.3E+02 0.0029 23.9 4.5 33 9-41 2-36 (150)
No 1
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1.9e-51 Score=376.14 Aligned_cols=292 Identities=71% Similarity=1.217 Sum_probs=260.9
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEe---cCchhHHHHHHHHH
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRN 78 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~---~~~~~~~~~~~~~~ 78 (295)
+|++++++.+|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.+||+|+.+ +++++++..+++++
T Consensus 113 ~A~~~g~~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~ 192 (410)
T PLN02618 113 LAKRLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRD 192 (410)
T ss_pred HHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 577889999999888899999999999999999999999965555667899999999999999 55777877666667
Q ss_pred HHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEee
Q 022573 79 WVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVE 158 (295)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve 158 (295)
++++..+.+|+.++..|+|||+.++++|+++++.|+.+|++++.+..||+||+|+|+||+++|++.+|+..+.++||+||
T Consensus 193 ~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~~~~v~ligVE 272 (410)
T PLN02618 193 WVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFIDDEDVRLIGVE 272 (410)
T ss_pred HHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHhCCCceEEEEE
Confidence 77765678999999889999987889999999999999998888878999999999999999999999878999999999
Q ss_pred cCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHH
Q 022573 159 AAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAY 238 (295)
Q Consensus 159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~ 238 (295)
|.++...+..++.++..|+++.+++...|+++++.+++..+++|++||+++++++.+.+++....++++.|+|+|+++++
T Consensus 273 a~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~ 352 (410)
T PLN02618 273 AAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAF 352 (410)
T ss_pred eCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHH
Confidence 99985544456678888988877777778888877878888999999999999988777777788999999999999999
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 239 QRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 239 ~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
++|++++||+++++|+.+++++++++++++++++||+++||+|.||++++.+++.
T Consensus 353 ~~La~~eGIi~~~sSa~a~a~a~~~a~~l~~~~~iVv~lsgrG~Kd~~~v~~~~~ 407 (410)
T PLN02618 353 QRLSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVVNCSGRGDKDVNTAIKYLQ 407 (410)
T ss_pred HHHHHHcCceEchhHHHHHHHHHHHhHhcCCCCEEEEEeCCCCcCCHHHHHHHhc
Confidence 9999999999999999999999999988888999999999999999999988764
No 2
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=8.8e-51 Score=371.21 Aligned_cols=292 Identities=61% Similarity=0.986 Sum_probs=258.5
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC---chhHHHHHHHHH
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRN 78 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~---~~~~~~~~~~~~ 78 (295)
+|++.|++.+|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.+||+|+.++. +++++..++.+.
T Consensus 100 ~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~ 179 (397)
T PRK04346 100 LAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRD 179 (397)
T ss_pred HHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 57888999999988899999999999999999999999996545556788999999999999985 566777777776
Q ss_pred HHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEee
Q 022573 79 WVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVE 158 (295)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve 158 (295)
+.++.++.+|+.+++.|+|||+.++.+|+++++.|+.+|+.++.+..||+||+|+|+||+++|++.+|+..|.+|||+||
T Consensus 180 ~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~~~~v~iigVE 259 (397)
T PRK04346 180 WVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVE 259 (397)
T ss_pred HHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhhCCCCeEEEEe
Confidence 77665567888888889999988888999999999999998888778999999999999999999999878999999999
Q ss_pred cCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHH
Q 022573 159 AAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAY 238 (295)
Q Consensus 159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~ 238 (295)
|.++...+..++.++..|..+.+++...|+++++.+++..+++|++||+++++++...++.....++++.|+|+|+++++
T Consensus 260 ~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~ 339 (397)
T PRK04346 260 AAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAF 339 (397)
T ss_pred cCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHH
Confidence 99976544456778888988888888888888888888889999999999999987777777778899999999999999
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 239 QRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 239 ~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
++|++++||++++++|.+++++++++++++++++||+++||+|++|++++.+.+.
T Consensus 340 ~~L~~~eGIi~~~esa~AlA~a~kla~~l~~~~~Vvv~lsGrG~kd~~~~~~~~~ 394 (397)
T PRK04346 340 QLLSRLEGIIPALESSHALAYALKLAPTLGKDQIIVVNLSGRGDKDVFTVAKLLG 394 (397)
T ss_pred HHHHHHcCCEeccHHHHHHHHHHHhhhhcCCCCeEEEEeCCCCccCHHHHHHHhc
Confidence 9999999999999999999999999888878999999999999999999988753
No 3
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=6.5e-50 Score=366.05 Aligned_cols=292 Identities=54% Similarity=0.898 Sum_probs=254.3
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC---chhHHHHHHHHH
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRN 78 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~---~~~~~~~~~~~~ 78 (295)
+|++.|++.+|+++|+||||+|+|++|+++|++|+||||+.+++++..|+++|+.+||+|+.++. .++++..++++.
T Consensus 104 ~A~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~ 183 (402)
T PRK13028 104 LAKRMGKKRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFED 183 (402)
T ss_pred HHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 57888999899888899999999999999999999999997555555789999999999999985 677887777666
Q ss_pred HHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEee
Q 022573 79 WVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVE 158 (295)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve 158 (295)
+.++.++.+|+.+++.++|||+.++.+|+++++.|+.+|+.++.+..||+||+|+|+||+++|++.+|++.+.++||+||
T Consensus 184 ~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~~~~v~iigVE 263 (402)
T PRK13028 184 YLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLDDESVRLVGVE 263 (402)
T ss_pred HHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHhCCCceEEEEe
Confidence 66664567899888889999987888999999999999998888778999999999999999999999877999999999
Q ss_pred cCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHH
Q 022573 159 AAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAY 238 (295)
Q Consensus 159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~ 238 (295)
|.+....+..++.++..|..+.+++...|++++..+++...++|++||+++++++....+.....++++.|+|+|+++++
T Consensus 264 ~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~ 343 (402)
T PRK13028 264 PAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAF 343 (402)
T ss_pred cCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHH
Confidence 98832222344567888888777777777777777777777999999999999988777777778899999999999999
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 239 QRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 239 ~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
++|++++||+++++||+++++++++++++.++++||+++||+|++|++++.+.+.
T Consensus 344 ~~La~~eGIi~~~~sa~alA~a~~~a~~l~~~~~VVv~lsG~G~kd~~~~~~~~~ 398 (402)
T PRK13028 344 FLLSRTEGIIPALESSHAVAYAIKLAPELSKDETILVNLSGRGDKDIDYVAEMLG 398 (402)
T ss_pred HHHHHhcCCeeccHHHHHHHHHHHhhhhcCCCCeEEEEECCCCccCHHHHHHHhC
Confidence 9999999999999999999999999988888999999999999999999988653
No 4
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.3e-46 Score=345.54 Aligned_cols=289 Identities=58% Similarity=0.976 Sum_probs=231.6
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc---hhHHHHHHHHHH
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC---FKEASSEAIRNW 79 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~---~~~~~~~~~~~~ 79 (295)
+++.|++.+|+++|+||||+|+|++|+++|++|+||||+.+.+....|+++|+.+||+|+.++.. +++++.++.+++
T Consensus 93 a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~ 172 (385)
T TIGR00263 93 AKRMGKKRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDW 172 (385)
T ss_pred HHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56778888888888999999999999999999999999853333346788999999999999853 556555555555
Q ss_pred HhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeec
Q 022573 80 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEA 159 (295)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~ 159 (295)
+++.++.+|+.+++.|+|||+..+..|++|++.|+.+|+.++.+..||+||+|+|+||+++|++.++...|+++||+|||
T Consensus 173 ~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~~~~~~iigVe~ 252 (385)
T TIGR00263 173 VTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFIDDPSVQLIGVEA 252 (385)
T ss_pred HHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhhCCCCeEEEEEe
Confidence 66545678888888888999766678999999999887754444468999999999999999999887789999999999
Q ss_pred CCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHH
Q 022573 160 AGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQ 239 (295)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~ 239 (295)
.++..++..+..++..|......+...+......+.....+++++|++++..++....+.....++++.|+|+|++++++
T Consensus 253 ~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~ 332 (385)
T TIGR00263 253 GGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFK 332 (385)
T ss_pred CCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHH
Confidence 99754333445667666654333322233233333445678999999988888766566666778999999999999999
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHh
Q 022573 240 RLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291 (295)
Q Consensus 240 ~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~ 291 (295)
+|++++||+++|++|++++++++++++++++++||+++||+|++|++++.++
T Consensus 333 ~la~~egi~~~~ssaaalaa~~~~~~~l~~~~~Vv~i~~g~G~~d~~~~~~~ 384 (385)
T TIGR00263 333 LLSRNEGIIPALESSHALAHLEKIAPTLPKDQIVVVNLSGRGDKDIFTIAKY 384 (385)
T ss_pred HHHHhcCCeechHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCCHHHHHhh
Confidence 9999999999999999999999998877789999999999999999998765
No 5
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.5e-46 Score=360.48 Aligned_cols=293 Identities=53% Similarity=0.891 Sum_probs=250.0
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC---chhHHHHHHHHH
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRN 78 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~---~~~~~~~~~~~~ 78 (295)
+|++.|++.+|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.+||+|+.++. .+.+++.++.++
T Consensus 312 ~a~~~g~~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~ 391 (610)
T PRK13803 312 LAKRMGKTRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRD 391 (610)
T ss_pred HHHHcCCCEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999888899999999999999999999999987555556789999999999999985 455666666666
Q ss_pred HHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEee
Q 022573 79 WVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVE 158 (295)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve 158 (295)
+..+.++.+|+.+++.|+|||+.++..|+++++.|+.+|+.++.+..||+||+|+|+||+++|++.+|+..++++||+||
T Consensus 392 ~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~~~~v~iigVE 471 (610)
T PRK13803 392 WVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLDDPSVKLIGVE 471 (610)
T ss_pred HHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhhCCCceEEEEe
Confidence 64544567888888788899987777899999999999887666667999999999999999999999878999999999
Q ss_pred cCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHH
Q 022573 159 AAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAY 238 (295)
Q Consensus 159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~ 238 (295)
|.++......+..++..|.++.+++...++.++..+++..++++++||+++++++....+.....++++.|+|+|+++++
T Consensus 472 ~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~ 551 (610)
T PRK13803 472 AGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAF 551 (610)
T ss_pred cCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHH
Confidence 99875433455678888888777776667666666667778999999999999987655555556789999999999999
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 239 QRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 239 ~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
++|++.+||+++++||.+++++++++.+++++++||+++||+|++|++++.++++.
T Consensus 552 ~~La~~eGi~~~~ssa~alA~~~~~~~~~~~~~~Vvv~lsG~G~kd~~~~~~~~~~ 607 (610)
T PRK13803 552 KLLAKLEGIIPALESSHALAYLKEGRKKFKKKDIVIVNLSGRGDKDIPTLKEYFEN 607 (610)
T ss_pred HHHHHHcCCccCcHHHHHHHHHHHhchhcCCCCeEEEEeCCCCcCCHHHHHHHHhh
Confidence 99999999999999999999999998888789999999999999999999887753
No 6
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-46 Score=321.19 Aligned_cols=293 Identities=58% Similarity=0.971 Sum_probs=276.8
Q ss_pred CcccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC---chhHHHHHHHH
Q 022573 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIR 77 (295)
Q Consensus 1 ~~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~---~~~~~~~~~~~ 77 (295)
|+|+++|++.+|.+.++|+||.|.|.+|+++|++|+|||-..+.+++..|+-.|+.+||+|+-+.. +..|+..++++
T Consensus 96 LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlR 175 (396)
T COG0133 96 LLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALR 175 (396)
T ss_pred HHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHH
Confidence 689999999999998889999999999999999999999988888888999999999999998876 57899999999
Q ss_pred HHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEe
Q 022573 78 NWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGV 157 (295)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~v 157 (295)
.|..+...-+|+..+..+||||+.++..+++.++.|+-.||.++.+..||.||.|||+|+.+.|++..|...+++++|||
T Consensus 176 dWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d~~V~LiGv 255 (396)
T COG0133 176 DWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGV 255 (396)
T ss_pred HHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCCCCceEEEe
Confidence 99998888899999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred ecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHH
Q 022573 158 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237 (295)
Q Consensus 158 e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a 237 (295)
|+.+-...+..+..++..|+++.++|+.-|+++++.+++...++|+.||++|++||...++....-.+.+.|+|+|+++|
T Consensus 256 EaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~a 335 (396)
T COG0133 256 EAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEA 335 (396)
T ss_pred ccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHH
Confidence 99998877778889999999999999999999999999999999999999999999998888888888999999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 238 ~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
.+.|.+.|||.....|+.+++.+.+++++.++++.+|+.++|+|+||..++.+.+.
T Consensus 336 f~~L~r~EGIIPALESsHAlA~a~kla~~~~~~~~ivvnlSGRGDKDv~tv~~~l~ 391 (396)
T COG0133 336 FQLLSRLEGIIPALESSHALAYALKLAPKLPKDEIIVVNLSGRGDKDVFTVAKLLG 391 (396)
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHhchhcCCCcEEEEEccCCCcccHHHHHHHhh
Confidence 99999999999989999999999999998888889999999999999999988764
No 7
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=6.2e-46 Score=357.11 Aligned_cols=291 Identities=49% Similarity=0.853 Sum_probs=245.0
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC---chhHHHHHHHHH
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRN 78 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~---~~~~~~~~~~~~ 78 (295)
.|++.|++.+|+++|+||||+|+|++|+++|++|+||||+.+..++..|+.+|+.|||+|+.++. .++++..+++++
T Consensus 373 ~A~~~G~~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~ 452 (695)
T PRK13802 373 LVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRD 452 (695)
T ss_pred HHHHcCCCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHH
Confidence 57788998888888999999999999999999999999996544556799999999999999984 456766666666
Q ss_pred HHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhC-CCCCEEEEecCCchhHHHhhhhhhcCCCceEEEe
Q 022573 79 WVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG-GKPDVLLACVGSGSNALGLFHEFINDEDVRLIGV 157 (295)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~-~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~v 157 (295)
+.++.++.+|+.+|+.|+|||+.++.+|+++++.|+.+|+.+..+ ..||+||+|+|+||+++|++.+|+..+.+|+|||
T Consensus 453 ~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~~~~vkligV 532 (695)
T PRK13802 453 WVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLDDERVNLYGY 532 (695)
T ss_pred HHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHhCCCceEEEE
Confidence 776655567888999999999877889999999998877644333 2699999999999999999999987899999999
Q ss_pred ecCCCCCCccchhhhhc--cCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHH
Q 022573 158 EAAGFGLDSGKHAATLA--KGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAV 235 (295)
Q Consensus 158 e~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~ 235 (295)
||.++.+....+...+. .|.++.++|...|...++.++....++|+.||++|++|+.+.++......+.+.|+|+|++
T Consensus 533 E~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal 612 (695)
T PRK13802 533 EAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAM 612 (695)
T ss_pred EecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHH
Confidence 99998654333333333 3677778888888888777777888999999999999999877766544466999999999
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCC----CCeEEEEecCCCcCChHHHHHhH
Q 022573 236 QAYQRLCRLEGIFPALEASHALAFLEKLCPTLPN----GAKVVVNCSGGGDKDVDTVVNYR 292 (295)
Q Consensus 236 ~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~----~~~vv~v~tg~g~~~~~~~~~~~ 292 (295)
++.+.|++.|||+++++|+.++++++++++++++ +++||+++||+|+||++++.+++
T Consensus 613 ~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~~~~ 673 (695)
T PRK13802 613 NAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTAGKWF 673 (695)
T ss_pred HHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHHHHHh
Confidence 9999999999999999999999999999887653 56999999999999999998765
No 8
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-45 Score=324.75 Aligned_cols=253 Identities=23% Similarity=0.235 Sum_probs=215.8
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCC
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEK 85 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~ 85 (295)
+...++|+ +|+||||+++|++|+++|++++||||.++| +.|++.++.|||||++++.+|+++...+ ++++++ .+
T Consensus 72 ~~~~gVia-aSaGNHaQGvA~aa~~lGi~a~IvMP~~tp---~~Kv~a~r~~GaeVil~g~~~dda~~~a-~~~a~~-~G 145 (347)
T COG1171 72 ERAAGVIA-ASAGNHAQGVAYAAKRLGIKATIVMPETTP---KIKVDATRGYGAEVILHGDNFDDAYAAA-EELAEE-EG 145 (347)
T ss_pred hhcCceEE-ecCCcHHHHHHHHHHHhCCCEEEEecCCCc---HHHHHHHHhcCCEEEEECCCHHHHHHHH-HHHHHH-cC
Confidence 34555555 689999999999999999999999999876 4689999999999999999999998777 456766 35
Q ss_pred ceeeeCcccCCCCCch-hhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCC
Q 022573 86 SYYLTGTVVGPHPCPI-MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFG 163 (295)
Q Consensus 86 ~~~~~~~~~~~~p~~~-~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~ 163 (295)
..|+ |||++ ++++||+|++.|+.+|+ ...||+||||+|+||+++|++.+++. .|.+|||||||++++
T Consensus 146 ~~~i-------~pfD~p~viAGQGTi~lEileq~----~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~ 214 (347)
T COG1171 146 LTFV-------PPFDDPDVIAGQGTIALEILEQL----PDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAP 214 (347)
T ss_pred CEEe-------CCCCCcceeecccHHHHHHHHhc----cccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCCh
Confidence 5666 88865 79999999998887554 33479999999999999999999985 899999999999996
Q ss_pred CCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHH
Q 022573 164 LDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 243 (295)
Q Consensus 164 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~ 243 (295)
+++.|+..|+.... .....+++||+.+..+|..-+.+.+.++|+++.|+|+|+.++|+.+++
T Consensus 215 ----~~~~Sl~~G~~~~~--------------~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~ 276 (347)
T COG1171 215 ----SMYASLKAGKIVVV--------------LPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFE 276 (347)
T ss_pred ----HHHHHHHcCCceee--------------cCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHh
Confidence 78999998844321 223789999999988887656677888999999999999999999999
Q ss_pred HhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 244 LEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 244 ~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
++++.+||++|.+++++++...+..++++|+++.|| ||.++..+.+...+
T Consensus 277 ~~~iI~EpaGAlalAal~~~~~~~~~g~~v~~ilSG-gN~d~~~~~~v~~~ 326 (347)
T COG1171 277 RTKIIAEPAGALALAALLAGKIEPLQGKTVVVILSG-GNIDFERLAEVLER 326 (347)
T ss_pred cCCeeccccHHHHHHHHHhhhhhhcCCCeEEEEecC-CCCCHHHHHHHHhc
Confidence 999999999999999999887653467779999997 79999999877654
No 9
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=9.1e-45 Score=331.88 Aligned_cols=285 Identities=58% Similarity=0.961 Sum_probs=217.3
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc---hhHHHHHHHHHH
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC---FKEASSEAIRNW 79 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~---~~~~~~~~~~~~ 79 (295)
|.+.|++.+|+++|+||||+|+|++|+++|++|+||||+.++++...|+++++.+||+|+.++.. +++++.++.+..
T Consensus 77 a~~~g~~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~ 156 (365)
T cd06446 77 AKRMGKKRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDW 156 (365)
T ss_pred HHHcCCCeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 56788889998778899999999999999999999999864443446888999999999999863 355554454444
Q ss_pred HhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeec
Q 022573 80 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEA 159 (295)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~ 159 (295)
.++..+.+|+.+++.+++|++.++++|+++++.||.+|+.+..+..||+||+|+|+|||++|++.++++.+++|||+|||
T Consensus 157 ~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~~~~~vigVep 236 (365)
T cd06446 157 VTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVEA 236 (365)
T ss_pred HhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhCCCceEEEEcC
Confidence 44432456666776666888767889999999898877744323469999999999999999999887777999999999
Q ss_pred CCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHH
Q 022573 160 AGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQ 239 (295)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~ 239 (295)
.+++.+......++..+....+++...|...+.......+.|+++||.++.+++....+...++|+++.|+|+|++++++
T Consensus 237 ~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r 316 (365)
T cd06446 237 GGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFK 316 (365)
T ss_pred CCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHH
Confidence 98763211111334444443221110010000001234567899999877677665557777889999999999999999
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHH
Q 022573 240 RLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 287 (295)
Q Consensus 240 ~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~ 287 (295)
+|++++||+++||+|+++++++++.++.+++++||+|+||+|++|+++
T Consensus 317 ~la~~eGi~~epssgaalAa~~~~~~~~~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 317 LLARTEGIIPALESSHAIAYAIKLAKKLGKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred HHHHhcCceeCccchHHHHHHHHHHHhcCCCCeEEEEeCCCCcccccc
Confidence 999999999999999999999999887667889999999999999876
No 10
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-44 Score=312.74 Aligned_cols=235 Identities=24% Similarity=0.341 Sum_probs=195.1
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--c-hhHHHHHHHHHHHhc
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--C-FKEASSEAIRNWVGN 82 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~-~~~~~~~~~~~~~~~ 82 (295)
..++.+|+++||||+|+++|++|+.+|+++++|||++.+ +.|+++|+.|||+|+.++. . +..+.+++ ++++++
T Consensus 59 l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S---~er~~~l~a~GAevi~t~~~~g~~~~a~~~a-~el~~~ 134 (300)
T COG0031 59 LKPGGTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMS---QERRKLLRALGAEVILTPGAPGNMKGAIERA-KELAAE 134 (300)
T ss_pred CCCCCEEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHcCCEEEEcCCCCCchHHHHHHH-HHHHHh
Confidence 457889999999999999999999999999999999632 3467799999999999997 3 45555555 457777
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCC
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAG 161 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~ 161 (295)
.++.++.++||.|+.++. .| ...+++||++|++..+|+||+++|||||++|++++||. .|++++++|||.+
T Consensus 135 ~p~~~~~~~Qf~NpaN~~-----aH---~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~ 206 (300)
T COG0031 135 IPGYAVWLNQFENPANPE-----AH---YETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEG 206 (300)
T ss_pred CCCceEchhhcCCCccHH-----HH---HhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCC
Confidence 665577789999876653 22 45677999999998899999999999999999999985 8999999999999
Q ss_pred CCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchh--HHHhhcCCceEEEeCHHHHHHHHH
Q 022573 162 FGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEI--SFLRDTGRAEFYTATDQEAVQAYQ 239 (295)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~--~~~~~~~~~~~~~V~d~e~~~a~~ 239 (295)
+..+ ..|. + ++.+ +++|..+ ..++...+|+++.|+|+++++++|
T Consensus 207 S~~~--------~~G~-g-------------------~~~i------~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r 252 (300)
T COG0031 207 SVLL--------SGGE-G-------------------PHKI------EGIGAGFVPENLDLDLIDEVIRVSDEEAIATAR 252 (300)
T ss_pred Cccc--------CCCC-C-------------------Cccc------CCCCCCcCCcccccccCceEEEECHHHHHHHHH
Confidence 8632 1122 1 2323 2344332 346677799999999999999999
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChH
Q 022573 240 RLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 286 (295)
Q Consensus 240 ~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~ 286 (295)
+|+++||+++++|||++++|+++++++++++++||+|++|+|.+|++
T Consensus 253 ~La~~eGilvG~SsGA~~~aa~~~a~~~~~g~~IVti~pD~G~RYls 299 (300)
T COG0031 253 RLAREEGLLVGISSGAALAAALKLAKELPAGKTIVTILPDSGERYLS 299 (300)
T ss_pred HHHHHhCeeecccHHHHHHHHHHHHHhcCCCCeEEEEECCCcccccC
Confidence 99999999999999999999999999988899999999999999987
No 11
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-42 Score=318.51 Aligned_cols=250 Identities=21% Similarity=0.230 Sum_probs=202.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCc
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKS 86 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (295)
+.+++|+ +|+||||+++|++|+++|++|+||||++.+ ..|++.++.|||+|+.++++++++...+. +++++ .+.
T Consensus 67 ~~~gVV~-aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p---~~k~~~~r~~GA~Vv~~g~~~~~a~~~a~-~~a~~-~g~ 140 (403)
T PRK08526 67 KQHGVIA-ASAGNHAQGVAISAKKFGIKAVIVMPEATP---LLKVSGTKALGAEVILKGDNYDEAYAFAL-EYAKE-NNL 140 (403)
T ss_pred cCCEEEE-ECccHHHHHHHHHHHHcCCCEEEEEcCCCC---HHHHHHHHhCCCEEEEECCCHHHHHHHHH-HHHHh-cCC
Confidence 3455555 789999999999999999999999999764 35788999999999999999999987774 56655 244
Q ss_pred eeeeCcccCCCCCch-hhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCC
Q 022573 87 YYLTGTVVGPHPCPI-MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 87 ~~~~~~~~~~~p~~~-~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~ 164 (295)
+|+ |||++ .+++|++|++.|+. +|++ .+|+||+|+|+||+++|++.+||. .|.+|||+|||++++
T Consensus 141 ~~v-------~p~~~~~~i~G~gtia~EI~----eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~- 207 (403)
T PRK08526 141 TFI-------HPFEDEEVMAGQGTIALEML----DEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAP- 207 (403)
T ss_pred Eee-------CCCCCHHHHhhhHHHHHHHH----HhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCC-
Confidence 554 55532 56899988877766 4453 599999999999999999999985 899999999999986
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 244 (295)
.+..++..|+... .....++++|+.++.+++....+...++|+++.|+|+|+.+|++.|+++
T Consensus 208 ---~~~~s~~~g~~~~---------------~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~ 269 (403)
T PRK08526 208 ---AMYESFHAKKIIN---------------SKSVRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLEK 269 (403)
T ss_pred ---hHHHHHHcCCccc---------------CCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 3455666665431 1236789999987766655434445678999999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 245 EGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 245 ~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
+|++++|++|++++++++...++.++++||+++|| |+.|.+.+.+.+++
T Consensus 270 ~gi~ve~aga~~lAall~~~~~~~~~~~Vv~ilsG-Gnid~~~~~~i~~~ 318 (403)
T PRK08526 270 QKIVVEGAGAASVAALLHQKIDLKKGKKIGVVLSG-GNIDVQMLNIIIEK 318 (403)
T ss_pred cCcEeeHHHHHHHHHHHhCccccccCCeEEEEECC-CCCCHHHHHHHHHH
Confidence 99999999999999998654445568899999998 79999999887654
No 12
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.3e-42 Score=324.38 Aligned_cols=251 Identities=20% Similarity=0.192 Sum_probs=205.2
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCc
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKS 86 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (295)
+.+++|+ +|+||||+++|++|+++|++|+||||++.+ ..|++.++.|||+|+.++++++++...+. +++++. +.
T Consensus 84 ~~~GVV~-aSaGNha~gvA~aA~~lGi~~~IvmP~~tp---~~Kv~~~r~~GAeVil~g~~~d~a~~~A~-~la~e~-g~ 157 (521)
T PRK12483 84 LARGVIT-ASAGNHAQGVALAAARLGVKAVIVMPRTTP---QLKVDGVRAHGGEVVLHGESFPDALAHAL-KLAEEE-GL 157 (521)
T ss_pred hcCcEEE-ECCCHHHHHHHHHHHHhCCCEEEEECCCCC---HHHHHHHHHCCCEEEEECCCHHHHHHHHH-HHHHhc-CC
Confidence 3445555 689999999999999999999999999765 36889999999999999999999987774 456552 45
Q ss_pred eeeeCcccCCCCCch-hhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCC
Q 022573 87 YYLTGTVVGPHPCPI-MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 87 ~~~~~~~~~~~p~~~-~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~ 164 (295)
+|+ |||++ .+++||+|++.|+. +|++..||+||+|+|+||+++|++.++|. .|++|||||||++++
T Consensus 158 ~~v-------~pfdd~~viaGqgTig~EI~----eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~- 225 (521)
T PRK12483 158 TFV-------PPFDDPDVIAGQGTVAMEIL----RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSN- 225 (521)
T ss_pred eee-------CCCCChHHHHHHHHHHHHHH----HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCc-
Confidence 555 55543 57889999887776 44544699999999999999999999985 899999999999986
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 244 (295)
.+..++..|++... ....+++||+.++.++.....+...++|+++.|+|+|+.+++++|+++
T Consensus 226 ---~~~~sl~~g~~~~~---------------~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~ 287 (521)
T PRK12483 226 ---CLQAALAAGERVVL---------------GQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDD 287 (521)
T ss_pred ---hhhHHHhcCCcccC---------------CCCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 44566766665421 235789999987777755444557789999999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhcCCCC-CCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 245 EGIFPALEASHALAFLEKLCPTLP-NGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 245 ~gi~~~~ssa~a~aa~~~~~~~~~-~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
+|++++|++|++++|++++.++.. ++++||+|+|| |+.+++.+.+.+++
T Consensus 288 ~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsG-gNid~~~l~~i~~r 337 (521)
T PRK12483 288 TRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSG-ANVNFDRLRHVAER 337 (521)
T ss_pred CCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCC-CCCCHHHHHHHHHH
Confidence 999999999999999999865422 58899999998 79999999887654
No 13
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.1e-41 Score=321.07 Aligned_cols=253 Identities=21% Similarity=0.206 Sum_probs=207.2
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccC
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLE 84 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~ 84 (295)
+.+.+++|+ +|+||||+++|++|+++|++|+||||++++ ..|++.++.+||+|+.++.+++++...+ ++++++ .
T Consensus 62 ~~~~~gVV~-aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp---~~Kv~~~r~~GA~Vvl~g~~~d~a~~~a-~~la~~-~ 135 (499)
T TIGR01124 62 EQKARGVIA-ASAGNHAQGVAFSAARLGLKALIVMPETTP---DIKVDAVRGFGGEVVLHGANFDDAKAKA-IELSQE-K 135 (499)
T ss_pred HhcCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhCCCEEEEeCcCHHHHHHHH-HHHHHh-c
Confidence 445566665 689999999999999999999999999765 3688899999999999999999888766 456665 2
Q ss_pred CceeeeCcccCCCCCch-hhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCC
Q 022573 85 KSYYLTGTVVGPHPCPI-MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGF 162 (295)
Q Consensus 85 ~~~~~~~~~~~~~p~~~-~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~ 162 (295)
+.+|+ +||++ .+++|++|++.|+. +|++..+|+||+|+|+|||++|++.++|. .|++|||+|||.++
T Consensus 136 g~~~i-------~p~~~~~~i~G~gtig~EI~----~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~ 204 (499)
T TIGR01124 136 GLTFI-------HPFDDPLVIAGQGTLALEIL----RQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDS 204 (499)
T ss_pred CCEee-------CCCCChHHHHhhHHHHHHHH----HhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 44554 55532 46789988776665 55555799999999999999999999985 89999999999998
Q ss_pred CCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHH
Q 022573 163 GLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLC 242 (295)
Q Consensus 163 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~ 242 (295)
+ ++..++..|++... ....++++|+.++.+++....+...++|+++.|+|+|+.+|++.++
T Consensus 205 ~----~~~~s~~~g~~~~~---------------~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~ 265 (499)
T TIGR01124 205 D----CMKQALDAGEPVDL---------------DQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLF 265 (499)
T ss_pred h----HHHHHHhcCCceeC---------------CCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHH
Confidence 5 55667777765432 2357899999887777654556677899999999999999999999
Q ss_pred HHhCCCCCcchhhHHHHHHHhcCCCC-CCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 243 RLEGIFPALEASHALAFLEKLCPTLP-NGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 243 ~~~gi~~~~ssa~a~aa~~~~~~~~~-~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
+++|++++|++|++++|++++.++.. ++++||+|+|| ++.+++.+....+.
T Consensus 266 ~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG-~n~~~~~l~~~~~r 317 (499)
T TIGR01124 266 EDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSG-ANMNFHRLRYVSER 317 (499)
T ss_pred HhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECC-CCCCHHHHHHHHHH
Confidence 99999999999999999999876532 57899999998 68899998876653
No 14
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1e-41 Score=312.13 Aligned_cols=252 Identities=16% Similarity=0.211 Sum_probs=190.9
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC-------chh-HHH---HHHH
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG-------CFK-EAS---SEAI 76 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~-------~~~-~~~---~~~~ 76 (295)
++.+|+++||||||+++|++|+++|++|+||||++.+ +.|+++|+.|||+|+.+++ .+. .+. .++
T Consensus 103 ~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s---~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a- 178 (423)
T PLN02356 103 PGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVA---IEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEA- 178 (423)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCc---HHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHH-
Confidence 6678888899999999999999999999999999754 3678899999999999964 121 111 112
Q ss_pred HHHHhcc-------------------------------CCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCC
Q 022573 77 RNWVGNL-------------------------------EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK 125 (295)
Q Consensus 77 ~~~~~~~-------------------------------~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~ 125 (295)
++++++. ..++|+.+||.|+.++. ..|+ .|+.||++|++..
T Consensus 179 ~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~---ahg~-----gTg~EI~eQl~g~ 250 (423)
T PLN02356 179 NELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFR---AHYE-----GTGPEIWEQTQGN 250 (423)
T ss_pred HHHHHHhhhccccccccccccccccccccccccccccCCCCcEecCccCCcchHH---HHHh-----hHHHHHHHhcCCC
Confidence 2223221 03456668887665543 2333 3577778888768
Q ss_pred CCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCCcc-----chhhhhccCceeeeeccccccccccccccccc
Q 022573 126 PDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDSG-----KHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 199 (295)
Q Consensus 126 ~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 199 (295)
+|+||+|+|||||++|++++||+ .|++||++|||.++..+.. .+..++..|+... ...
T Consensus 251 ~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~----------------~~~ 314 (423)
T PLN02356 251 LDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLK----------------NPF 314 (423)
T ss_pred CCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccC----------------CCC
Confidence 99999999999999999999985 8999999999998753211 1223333443321 113
Q ss_pred ccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecC
Q 022573 200 HSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSG 279 (295)
Q Consensus 200 ~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg 279 (295)
.++++|++.+.+.. .+....+|+++.|+|+|+++++++|++++|+++||++|+++++++++++++.++++||+|+||
T Consensus 315 ~tia~Gig~~~~~~---~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~~~g~~VV~Il~d 391 (423)
T PLN02356 315 DTITEGIGINRLTQ---NFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSLGPGHTIVTILCD 391 (423)
T ss_pred CeecCcCcCCCCCh---hHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 67888887442222 234567899999999999999999999999999999999999999988776678999999999
Q ss_pred CCcCChHHHHH
Q 022573 280 GGDKDVDTVVN 290 (295)
Q Consensus 280 ~g~~~~~~~~~ 290 (295)
+|.+|++++.+
T Consensus 392 ~G~kyl~~~~~ 402 (423)
T PLN02356 392 SGMRHLSKFHD 402 (423)
T ss_pred CCcchhhhhcC
Confidence 99999999755
No 15
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=2e-41 Score=312.26 Aligned_cols=253 Identities=23% Similarity=0.237 Sum_probs=200.3
Q ss_pred cccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhcc
Q 022573 4 KRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNL 83 (295)
Q Consensus 4 ~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~ 83 (295)
.+.+....|+++|+||||+++|++|+++|++|+||||+..+ ..|+++++.|||+|+.++.+++++...+ ++++++
T Consensus 43 ~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~a~~~a-~~~~~~- 117 (380)
T TIGR01127 43 SEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAP---PSKVKATKSYGAEVILHGDDYDEAYAFA-TSLAEE- 117 (380)
T ss_pred chhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCc---HHHHHHHHHCCCEEEEECCCHHHHHHHH-HHHHHh-
Confidence 33444334556789999999999999999999999999754 3688999999999999999999888766 456665
Q ss_pred CCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCC
Q 022573 84 EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGF 162 (295)
Q Consensus 84 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~ 162 (295)
.+.+|+ ++|. +| .++.|++|++.|+. +|++ +||+||+|+|+||+++|++.+||. .|++|||+|||.++
T Consensus 118 ~~~~~~-~~~~--~~---~~~~g~~t~~~Ei~----~q~~-~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~ 186 (380)
T TIGR01127 118 EGRVFV-HPFD--DE---FVMAGQGTIGLEIM----EDIP-DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA 186 (380)
T ss_pred cCCEec-CCCC--Ch---hhhhhhHHHHHHHH----HhCC-CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 244443 4443 22 35688888776654 5554 699999999999999999999985 89999999999998
Q ss_pred CCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHH
Q 022573 163 GLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLC 242 (295)
Q Consensus 163 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~ 242 (295)
+ .++.++..|++.. .....++++|+.++.++.....+...++|+++.|+|+|+.+++++|+
T Consensus 187 ~----~~~~~~~~g~~~~---------------~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~ 247 (380)
T TIGR01127 187 P----SMYESLREGKIKA---------------VESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLL 247 (380)
T ss_pred h----HHHHHHHcCCcee---------------cCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHH
Confidence 5 4456676676542 12357889999876555433345667889999999999999999999
Q ss_pred HHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 243 RLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 243 ~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
+++|++++|++|++++++++.... .++++||+++|| |+.|.+.+...++
T Consensus 248 ~~~gi~~e~s~a~~laa~~~~~~~-~~~~~vv~i~sG-Gn~d~d~l~~vi~ 296 (380)
T TIGR01127 248 ERHKILAEGAGAAGVAALLEQKVD-VKGKKIAVVLSG-GNIDLNLLNKIIE 296 (380)
T ss_pred HhcCeEechHHHHHHHHHHhCccc-cCCCeEEEEeCC-CCCCHHHHHHHHH
Confidence 999999999999999999876433 367899999998 7999998877654
No 16
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=2.9e-41 Score=303.09 Aligned_cols=258 Identities=22% Similarity=0.260 Sum_probs=195.5
Q ss_pred ccccC---CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc-hhHHHHHHHHH
Q 022573 3 AKRMG---RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC-FKEASSEAIRN 78 (295)
Q Consensus 3 a~~~~---~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~-~~~~~~~~~~~ 78 (295)
|.+.+ .+++| ++|+||||+|+|++|+++|++|+||||+..+ +.|++.|+.+||+|+.++++ ++++.. ..++
T Consensus 43 a~~~g~~~~~~vv-~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~---~~k~~~l~~~GA~v~~~~~~~~~~~~~-~~~~ 117 (316)
T cd06448 43 SAKQGLNECVHVV-CSSGGNAGLAAAYAARKLGVPCTIVVPESTK---PRVVEKLRDEGATVVVHGKVWWEADNY-LREE 117 (316)
T ss_pred HHHhhcccCCeEE-EeCCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEECCchHHHHHH-HHHH
Confidence 44555 44444 5789999999999999999999999999754 36788999999999999987 554443 3345
Q ss_pred HHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCC--CCCEEEEecCCchhHHHhhhhhhc-C-CCceE
Q 022573 79 WVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG--KPDVLLACVGSGSNALGLFHEFIN-D-EDVRL 154 (295)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~--~~d~vvv~vG~Gg~~~G~~~~~~~-~-~~~~v 154 (295)
++++.++.+|+ +++. ||+ .++||.+++.|+. +|++. .||+||+|+|+||+++|++++|+. . ++++|
T Consensus 118 l~~~~~~~~~~-~~~~--n~~---~~~g~~t~~~Ei~----~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~i 187 (316)
T cd06448 118 LAENDPGPVYV-HPFD--DPL---IWEGHSSMVDEIA----QQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPV 187 (316)
T ss_pred HHhccCCcEEe-CCCC--Cch---hhccccHHHHHHH----HHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEE
Confidence 55543244554 4543 343 3578877766665 55543 599999999999999999999985 4 89999
Q ss_pred EEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHH
Q 022573 155 IGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEA 234 (295)
Q Consensus 155 i~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~ 234 (295)
|+|||.+++ .+..++..|.... .....++++|++.+.+++....+.....|+++.|+|+|+
T Consensus 188 i~Vep~g~~----~~~~~~~~g~~~~---------------~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~ 248 (316)
T cd06448 188 VAVETEGAH----SLNASLKAGKLVT---------------LPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDA 248 (316)
T ss_pred EEEeeCCCh----HHHHHHHcCCcEe---------------cCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHH
Confidence 999999985 3455565565431 113468999988665555433333445789999999999
Q ss_pred HHHHHHHHHHhCCCCCcchhhHHHHHHHhc-----C--CCCCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 235 VQAYQRLCRLEGIFPALEASHALAFLEKLC-----P--TLPNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 235 ~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~-----~--~~~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
++++++|++++||+++|++|++++++++.. + ++.++++||+++||+..++++.+.+++.+
T Consensus 249 ~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~~~~~~~~~ 315 (316)
T cd06448 249 VQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITLEQLKEYKKQ 315 (316)
T ss_pred HHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCHHHHHHHHHh
Confidence 999999999999999999999999998532 1 35788999999999544599999988754
No 17
>PLN02550 threonine dehydratase
Probab=100.00 E-value=3e-41 Score=319.64 Aligned_cols=251 Identities=21% Similarity=0.203 Sum_probs=205.6
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCC
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEK 85 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~ 85 (295)
....++|+ +|+||||+++|++|+++|++|+||||++.+ ..|++.++.|||+|+.++.+++++...+. +++++ .+
T Consensus 155 ~~~~GVV~-aSaGNhAqgvA~aA~~lGika~IvmP~~tp---~~Kv~~~r~~GAeVvl~g~~~dea~~~A~-~la~e-~g 228 (591)
T PLN02550 155 QLDKGVIC-SSAGNHAQGVALSAQRLGCDAVIAMPVTTP---EIKWQSVERLGATVVLVGDSYDEAQAYAK-QRALE-EG 228 (591)
T ss_pred cCCCCEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCHHHHHHHHH-HHHHh-cC
Confidence 34455555 689999999999999999999999999765 36888999999999999999998887764 55655 24
Q ss_pred ceeeeCcccCCCCCch-hhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCC
Q 022573 86 SYYLTGTVVGPHPCPI-MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFG 163 (295)
Q Consensus 86 ~~~~~~~~~~~~p~~~-~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~ 163 (295)
.+|+ |||++ .+++||+|++.|+. +|+...+|+||+|+|+||+++|++.++|. .|++|||||||.+++
T Consensus 229 ~~fi-------~pfddp~viaGqgTig~EI~----eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~ 297 (591)
T PLN02550 229 RTFI-------PPFDHPDVIAGQGTVGMEIV----RQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDAN 297 (591)
T ss_pred CEEE-------CCCCChHHHHHHHHHHHHHH----HHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCh
Confidence 4565 56643 57889988877765 55544699999999999999999999985 899999999999985
Q ss_pred CCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHH
Q 022573 164 LDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 243 (295)
Q Consensus 164 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~ 243 (295)
.+..++..|++... ....+++||+.++.+++....+.+.++|+++.|+|+|+.+|++.+++
T Consensus 298 ----~~~~s~~~G~~v~~---------------~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e 358 (591)
T PLN02550 298 ----AMALSLHHGERVML---------------DQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFE 358 (591)
T ss_pred ----HHHHHHhcCCcccc---------------CCCCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHH
Confidence 45667777765422 23578999998777776544566778999999999999999999999
Q ss_pred HhCCCCCcchhhHHHHHHHhcCCC-CCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 244 LEGIFPALEASHALAFLEKLCPTL-PNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 244 ~~gi~~~~ssa~a~aa~~~~~~~~-~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
++|++++|++|+++||++++.++. -++++||+|+|| |+.+++.+...++
T Consensus 359 ~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsG-gNid~~~l~~v~~ 408 (591)
T PLN02550 359 EKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSG-ANMNFDRLRIVTE 408 (591)
T ss_pred HCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecC-CCCCHHHHHHHHH
Confidence 999999999999999999987531 267899999998 6899999887654
No 18
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-42 Score=299.52 Aligned_cols=250 Identities=26% Similarity=0.258 Sum_probs=213.5
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++++.+.++|+ +|+||||.++|++|+++|+||+||||..+|. -|++.++.+||+|++.+.+++++...+. +++++
T Consensus 109 a~~~~~~gVia-sSaGNha~a~Ayaa~~LgipaTIVmP~~tp~---~kiq~~~nlGA~Vil~G~~~deAk~~a~-~lAke 183 (457)
T KOG1250|consen 109 AKQQKKAGVIA-SSAGNHAQAAAYAARKLGIPATIVMPVATPL---MKIQRCRNLGATVILSGEDWDEAKAFAK-RLAKE 183 (457)
T ss_pred HHhhhcCceEE-ecCccHHHHHHHHHHhcCCceEEEecCCChH---HHHHHHhccCCEEEEecccHHHHHHHHH-HHHHh
Confidence 55666777776 6899999999999999999999999998764 5889999999999999999999987774 56766
Q ss_pred cCCceeeeCcccCCCCCch-hhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecC
Q 022573 83 LEKSYYLTGTVVGPHPCPI-MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAA 160 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~-~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~ 160 (295)
.+..|| ||||+ .||+||+|++.||.+|+. ..+++||||||+||+++|++.++|. .|+++|||||+.
T Consensus 184 -~gl~yI-------~pfDhP~I~aGqgTig~EIl~ql~----~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~ 251 (457)
T KOG1250|consen 184 -NGLTYI-------PPFDHPDIWAGQGTIGLEILEQLK----EPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETE 251 (457)
T ss_pred -cCceec-------CCCCCchhhcCcchHHHHHHHhhc----CCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeec
Confidence 366776 78875 689999999988876664 4466999999999999999999986 899999999999
Q ss_pred CCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHH
Q 022573 161 GFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQR 240 (295)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~ 240 (295)
+|+ ++..+++.|.+..++ ...+++||++++.+|.....+...++|+++.|+|+|+..++..
T Consensus 252 ~a~----~f~~sl~~g~~V~lp---------------~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~ 312 (457)
T KOG1250|consen 252 GAH----SFNASLKAGKPVTLP---------------KITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILR 312 (457)
T ss_pred CcH----HHHHHHhcCCeeecc---------------cccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHH
Confidence 996 667889999988654 4689999999999998766667778999999999999999999
Q ss_pred HHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHH
Q 022573 241 LCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 289 (295)
Q Consensus 241 l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~ 289 (295)
+.+.+...++|++|+++++++...-.-.++++||-+.+| ++.+.+.+.
T Consensus 313 l~edek~vvEpAgaaaLaai~~~~~~~lk~~~vv~ilsG-~n~~~~~L~ 360 (457)
T KOG1250|consen 313 LFEDEKMVVEPAGAAALAAIYSGKLNHLKGKKVVSILSG-GNIDFDSLG 360 (457)
T ss_pred HHHhhhheeccchHHHHHHHHhccccccCCceEEeeccc-CCCCccccc
Confidence 999999999999999999999883233578899999998 466666553
No 19
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2.8e-41 Score=304.55 Aligned_cols=249 Identities=20% Similarity=0.194 Sum_probs=197.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCc
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKS 86 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (295)
+.+++| ++|+||||+|+|++|+.+|++|++|||++.+ +.|+++++.+||+|+.++++++++...+ ++++++ .+
T Consensus 71 ~~~~vv-~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~---~~k~~~~~~~GAeV~~~~~~~~~~~~~a-~~l~~~--~g 143 (321)
T PRK07048 71 RRAGVV-TFSSGNHAQAIALSARLLGIPATIVMPQDAP---AAKVAATRGYGGEVVTYDRYTEDREEIG-RRLAEE--RG 143 (321)
T ss_pred cCCcEE-EeCCCHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHCCCEEEEECCCHHHHHHHH-HHHHHh--cC
Confidence 445555 4689999999999999999999999999754 4688999999999999999777766444 556665 33
Q ss_pred eeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCC
Q 022573 87 YYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLD 165 (295)
Q Consensus 87 ~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~ 165 (295)
+|..+++.|+ ..++|+++++.|+. +|++ .||+||+|+|+||+++|++.+|+. .|+++||+|||++++
T Consensus 144 ~~~~~~~~~~-----~~~~g~~t~~~EI~----~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~-- 211 (321)
T PRK07048 144 LTLIPPYDHP-----HVIAGQGTAAKELF----EEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGN-- 211 (321)
T ss_pred CEEECCCCCc-----chhhccchHHHHHH----hhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCCh--
Confidence 4444555422 23578877776655 5554 699999999999999999999975 889999999999975
Q ss_pred ccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHh
Q 022573 166 SGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLE 245 (295)
Q Consensus 166 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~ 245 (295)
.+..++..|+... ...++++++|+.++.++.....+..+++|+++.|+|+|+++++++|++++
T Consensus 212 --~~~~s~~~g~~~~---------------~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~ 274 (321)
T PRK07048 212 --DGQQSFRSGEIVH---------------IDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERM 274 (321)
T ss_pred --hHHHHHHcCCccc---------------CCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhC
Confidence 3445566665321 22467889988776666543334457889999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 246 GIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 246 gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
|++++|++++++++++++.++ .++++||+|+|| |+.+++.+.+.+.
T Consensus 275 gi~~eps~a~~laa~~~~~~~-~~~~~vv~i~tG-Gn~~~~~~~~~~~ 320 (321)
T PRK07048 275 KIVVEPTGCLGAAAALRGKVP-LKGKRVGVIISG-GNVDLARFAALLS 320 (321)
T ss_pred CceeccHHHHHHHHHHhCchh-cCCCeEEEEeCC-CCCCHHHHHHHhc
Confidence 999999999999999987765 468899999997 7999999887653
No 20
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=6.1e-41 Score=310.67 Aligned_cols=261 Identities=17% Similarity=0.133 Sum_probs=203.1
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeee
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLT 90 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (295)
.|+++|+||||+|+|++|+++|++|+||||++.+ +.|++.++.|||+|+.++++++++...+ ++++++.++ +|+.
T Consensus 159 ~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~---~~K~~~ir~~GAeVi~~~~~~~~a~~~A-~~la~~~~~-~~~~ 233 (441)
T PRK02991 159 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADAR---QWKKDKLRSHGVTVVEYEGDYGVAVEEG-RKAAESDPN-CYFI 233 (441)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHHhcCC-eEeC
Confidence 4555799999999999999999999999999754 4688999999999999999999887666 456655323 4444
Q ss_pred CcccCCCCCchhhhhhhhhhhHHHHHHHHH---HhC-CCCCEEEEecCCchhHHHhhhhhhc--CCCceEEEeecCCCCC
Q 022573 91 GTVVGPHPCPIMVREFQSIIGKETRKQAME---KWG-GKPDVLLACVGSGSNALGLFHEFIN--DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 91 ~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~---q~~-~~~d~vvv~vG~Gg~~~G~~~~~~~--~~~~~vi~ve~~~~~~ 164 (295)
++++ + .++++||+|++.|+.+|+.. ..+ ..||+||+|+|+||+++|++.+||+ .+.++||+|||.+++
T Consensus 234 ~~~~--~---~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~- 307 (441)
T PRK02991 234 DDEN--S---RTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP- 307 (441)
T ss_pred CCCC--c---hhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCCh-
Confidence 4331 2 23678999999998877632 122 2478999999999999999999985 578999999999985
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 244 (295)
++..++..|+....+ ...-...++|+++||.++.++.....+.++++|+++.|+|+|+.+++++|+++
T Consensus 308 ---~~~~s~~~G~~~~~~---------~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~ 375 (441)
T PRK02991 308 ---CMLLGLMTGLHDQIS---------VQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADT 375 (441)
T ss_pred ---HHHHHHhcCCCccee---------ccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHh
Confidence 456677777643211 00000125689999987766654334445678999999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhcC------C--CC---CCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 245 EGIFPALEASHALAFLEKLCP------T--LP---NGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 245 ~gi~~~~ssa~a~aa~~~~~~------~--~~---~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
+|+++||++|+++++++++.+ + +. .+++||+|.|||..++.+.+.+++.+
T Consensus 376 ~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~~~~~~~~~ 436 (441)
T PRK02991 376 EGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEEEMEQYLAK 436 (441)
T ss_pred cCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHHHHHHHHHh
Confidence 999999999999999987654 1 33 57899999999999999999988764
No 21
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=4.7e-41 Score=317.98 Aligned_cols=252 Identities=21% Similarity=0.211 Sum_probs=205.5
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCC
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEK 85 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~ 85 (295)
.+.+++|+ +|+||||+++|++|+++|++|+||||++++ ..|++.++.+||+|+.++++++++...+ ++++++ .+
T Consensus 66 ~~~~gvV~-aSaGNha~avA~aa~~lGi~~~IvmP~~tp---~~K~~~~r~~GA~Vi~~g~~~~~a~~~a-~~l~~~-~g 139 (504)
T PRK09224 66 QLARGVIT-ASAGNHAQGVALSAARLGIKAVIVMPVTTP---DIKVDAVRAFGGEVVLHGDSFDEAYAHA-IELAEE-EG 139 (504)
T ss_pred hcCCEEEE-ECcCHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHHh-cC
Confidence 34556665 689999999999999999999999999765 3688899999999999999999998777 456665 34
Q ss_pred ceeeeCcccCCCCCch-hhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCC
Q 022573 86 SYYLTGTVVGPHPCPI-MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFG 163 (295)
Q Consensus 86 ~~~~~~~~~~~~p~~~-~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~ 163 (295)
.+|+ +||++ .+++|++|++.|+. +|++..||+||+|+|+||+++|++.++|. .|++|||+|||.+++
T Consensus 140 ~~~v-------~~f~~~~~i~G~gTi~~EI~----~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~ 208 (504)
T PRK09224 140 LTFI-------HPFDDPDVIAGQGTIAMEIL----QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSA 208 (504)
T ss_pred CEEe-------CCCCCcHHHHhHHHHHHHHH----HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCh
Confidence 5555 45532 46789988887765 55544599999999999999999999985 899999999999985
Q ss_pred CCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHH
Q 022573 164 LDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 243 (295)
Q Consensus 164 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~ 243 (295)
++..++..|++... ....++++|+.++.++.....+...++|+++.|+|+|+.++++.|++
T Consensus 209 ----~~~~s~~~g~~~~~---------------~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~ 269 (504)
T PRK09224 209 ----CLKAALEAGERVDL---------------PQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFE 269 (504)
T ss_pred ----HHHHHHhcCCCccC---------------CCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence 45667777765422 23567889988777765544566778999999999999999999999
Q ss_pred HhCCCCCcchhhHHHHHHHhcCCCC-CCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 244 LEGIFPALEASHALAFLEKLCPTLP-NGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 244 ~~gi~~~~ssa~a~aa~~~~~~~~~-~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
++|++++|++|++++|++++.++.. ++++||+|+|| ++.+++.+.+..+.
T Consensus 270 ~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG-~n~~~~~l~~~~~r 320 (504)
T PRK09224 270 DTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSG-ANMNFDRLRYVAER 320 (504)
T ss_pred hcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECC-CCCCHHHHHHHHHH
Confidence 9999999999999999999876421 48899999998 68899998887653
No 22
>PLN02970 serine racemase
Probab=100.00 E-value=6.8e-41 Score=302.36 Aligned_cols=250 Identities=17% Similarity=0.122 Sum_probs=193.3
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCC
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEK 85 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~ 85 (295)
.+.+.+| ++|+||||+|+|++|+++|++|+||||++.+ +.|++.|+.+||+|+.++.+++++.+.+ ++++++ +
T Consensus 73 ~~~~~vv-~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~---~~k~~~~~~~GA~Vi~~~~~~~~~~~~a-~~la~~-~- 145 (328)
T PLN02970 73 QAEKGVV-THSSGNHAAALALAAKLRGIPAYIVVPKNAP---ACKVDAVIRYGGIITWCEPTVESREAVA-ARVQQE-T- 145 (328)
T ss_pred hcCCeEE-EECCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhcCCEEEEeCCCHHHHHHHH-HHHHHh-c-
Confidence 3444555 5789999999999999999999999999754 3577899999999999999888776554 556655 3
Q ss_pred ceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCC
Q 022573 86 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~ 164 (295)
++|..+++.|+. .++|+++++.|+. +|+. .||+||+|+|+||+++|++++||. .|++|||+|||.+++
T Consensus 146 g~~~~~~~~n~~-----~~~g~~t~g~Ei~----~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~- 214 (328)
T PLN02970 146 GAVLIHPYNDGR-----VISGQGTIALEFL----EQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGAD- 214 (328)
T ss_pred CCEEeCCCCCcc-----hhhehHHHHHHHH----Hhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCc-
Confidence 344456664322 3568877766665 5554 599999999999999999999985 899999999999985
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 244 (295)
.+..++..|.... ...+.++++|+.++ ++.......+..+|+++.|+|+|+++++++|+++
T Consensus 215 ---~~~~s~~~g~~~~---------------~~~~~tia~gl~~~-~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~ 275 (328)
T PLN02970 215 ---DAAQSKAAGEIIT---------------LPVTNTIADGLRAS-LGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYER 275 (328)
T ss_pred ---HHHHHHHcCCcee---------------CCCCCCccccccCC-cCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHh
Confidence 3455666665431 12357888888764 4543333345678999999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhcCC---CCC-CCeEEEEecCCCcCChHHHHHhHh
Q 022573 245 EGIFPALEASHALAFLEKLCPT---LPN-GAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 245 ~gi~~~~ssa~a~aa~~~~~~~---~~~-~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
+|++++|++|++++++++...+ +.+ +++||+++|| |+.+++.+.+.+.
T Consensus 276 ~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~G-gn~~~~~~~~~~~ 327 (328)
T PLN02970 276 LKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSG-GNVDLGVLWESFS 327 (328)
T ss_pred cCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECC-CCCCHHHHHHHhh
Confidence 9999999999999998865432 123 4799999998 7999999887764
No 23
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-41 Score=301.99 Aligned_cols=248 Identities=21% Similarity=0.186 Sum_probs=196.3
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCce
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSY 87 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (295)
... |+++|+||||+|+|++|+++|++|+||||++.+ +.|+++++.+||+|+.+++++++++.++. +++++ .+.+
T Consensus 70 ~~~-vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~~~~~~~~~a~-~~~~~-~~~~ 143 (322)
T PRK06110 70 VRG-VISATRGNHGQSVAFAARRHGLAATIVVPHGNS---VEKNAAMRALGAELIEHGEDFQAAREEAA-RLAAE-RGLH 143 (322)
T ss_pred Cce-EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCC---HHHHHHHHHcCCEEEEECCCHHHHHHHHH-HHHHh-cCCE
Confidence 344 555789999999999999999999999999754 35778999999999999998888877664 45555 2444
Q ss_pred eeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCCc
Q 022573 88 YLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDS 166 (295)
Q Consensus 88 ~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~~ 166 (295)
|+ +++ +| +.++||.+++.|+. +|++ .+|+||+|+|+||+++|++.+|++ .|++|||+|||.+++
T Consensus 144 ~~-~~~---~~---~~~~G~~t~~~Ei~----~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~--- 208 (322)
T PRK06110 144 MV-PSF---HP---DLVRGVATYALELF----RAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAP--- 208 (322)
T ss_pred Ec-CCC---CC---hHHhccchHHHHHH----hhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCCh---
Confidence 44 443 33 34578888777665 5554 589999999999999999999975 889999999999975
Q ss_pred cchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhC
Q 022573 167 GKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEG 246 (295)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~g 246 (295)
.+..++..|+.... ....++++|+.++.+.+....+.++++|+++.|+|+|+++++++|++++|
T Consensus 209 -~~~~~~~~g~~~~~---------------~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~g 272 (322)
T PRK06110 209 -AYALSFEAGRVVTT---------------PVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTH 272 (322)
T ss_pred -HHHHHHHcCCcccC---------------CCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcC
Confidence 34555666654321 13578888887544443333345677899999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 247 IFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 247 i~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
++++|++++++++++++.+++ ++++||+++|| |+.|++.+.+.++.
T Consensus 273 i~~e~ssaa~laa~~~~~~~~-~~~~Vv~i~tG-gn~d~~~~~~~~~~ 318 (322)
T PRK06110 273 NVAEGAGAAALAAALQERERL-AGKRVGLVLSG-GNIDRAVFARVLAG 318 (322)
T ss_pred cEEehHHHHHHHHHHhChhhh-CCCcEEEEECC-CCCCHHHHHHHHhh
Confidence 999999999999999876653 67899999998 79999999987753
No 24
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=6e-41 Score=302.06 Aligned_cols=246 Identities=21% Similarity=0.265 Sum_probs=193.9
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+.+.+....|+++|+||||+|+|++|+++|++|+||||++.+ +.|++.++.|||+|+.++++++++...+ ++++++
T Consensus 75 a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~---~~K~~~i~~~GAeVv~~g~~~~~a~~~a-~~la~~ 150 (349)
T PRK08813 75 GLERGDERPVICASAGNHAQGVAWSAYRLGVQAITVMPHGAP---QTKIAGVAHWGATVRQHGNSYDEAYAFA-RELADQ 150 (349)
T ss_pred HHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCC---HHHHHHHHHcCCEEEEECCCHHHHHHHH-HHHHHh
Confidence 344555434556799999999999999999999999999754 4688999999999999999999887666 456665
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeecCCC
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGF 162 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~~ 162 (295)
.++|+.+++. || .+++||+|++.|+. +| .||+||+|+|+||+++|++.+||+ +.++||+|||+++
T Consensus 151 --~g~~~v~~~~--np---~~i~G~~Tig~EI~----e~---~pD~VvvpvGgGGliaGia~~lk~-~~~rVigVqpega 215 (349)
T PRK08813 151 --NGYRFLSAFD--DP---DVIAGQGTVGIELA----AH---APDVVIVPIGGGGLASGVALALKS-QGVRVVGAQVEGV 215 (349)
T ss_pred --cCCEEcCccC--Ch---HHHHHHHHHHHHHH----cC---CCCEEEEEeCccHHHHHHHHHHhc-CCCEEEEEEECCC
Confidence 2444444432 22 46789999988875 33 489999999999999999999985 5799999999998
Q ss_pred CCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHH
Q 022573 163 GLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLC 242 (295)
Q Consensus 163 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~ 242 (295)
+ .++.++. |.... .....++++|+.+...+.....+...++|+++.|+|+|+.+++++|+
T Consensus 216 ~----~~~~s~~-g~~~~---------------~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~ 275 (349)
T PRK08813 216 D----SMARAIR-GDLRE---------------IAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLA 275 (349)
T ss_pred c----hHHHHHc-CCCcc---------------cCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHH
Confidence 5 3455665 43221 12246899998764444333445667889999999999999999999
Q ss_pred HHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 243 RLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 243 ~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
+++|+++||++|+++++++++ .+++|++|+|| ||.+.+.+.+.+.
T Consensus 276 ~~~gl~vE~aga~alAa~~~~-----~~~~v~~vlsG-gN~d~~~~~~~~~ 320 (349)
T PRK08813 276 LEEHVIAEGAGALALAAGRRV-----SGKRKCAVVSG-GNIDATVLATLLS 320 (349)
T ss_pred HHcCcEEEEcHHHHHHHHHHh-----CCCCEEEEECC-CCCCHHHHHHHHH
Confidence 999999999999999998873 36789999998 7999999988664
No 25
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.2e-40 Score=308.40 Aligned_cols=250 Identities=25% Similarity=0.320 Sum_probs=199.2
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCE---EEEecCchhHHHHHHHHHHHhcc
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ---VKAVDGCFKEASSEAIRNWVGNL 83 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~---v~~~~~~~~~~~~~~~~~~~~~~ 83 (295)
..+++| ++|+||||+++|++|+++|++|+||||++.+ +.|++.++.|||+ |+..+++++++...+. +++++
T Consensus 63 ~~~gvv-~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~---~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~-~~~~~- 136 (409)
T TIGR02079 63 LAKGVV-CASAGNHAQGFAYACRHLGVHGTVFMPATTP---KQKIDRVKIFGGEFIEIILVGDTFDQCAAAAR-EHVED- 136 (409)
T ss_pred hCCEEE-EECccHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHH-HHHHh-
Confidence 345555 5689999999999999999999999999754 3678899999996 5566778888887764 45655
Q ss_pred CCceeeeCcccCCCCCch-hhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCC
Q 022573 84 EKSYYLTGTVVGPHPCPI-MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAG 161 (295)
Q Consensus 84 ~~~~~~~~~~~~~~p~~~-~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~ 161 (295)
.+.+|+ +||+. .+++||+|++.|+. +|++..||+||+|+|+||+++|++.+||. .|++|||+|||.+
T Consensus 137 ~g~~~~-------~~~~~~~~~~g~~ti~~Ei~----~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~ 205 (409)
T TIGR02079 137 HGGTFI-------PPFDDPRIIEGQGTVAAEIL----DQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEG 205 (409)
T ss_pred cCCEEe-------CCCCCHhHhhhhHHHHHHHH----HhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 234554 44432 35788887776665 55655699999999999999999999985 8999999999999
Q ss_pred CCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHH
Q 022573 162 FGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRL 241 (295)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l 241 (295)
++ .+..++..|++.. .....++++|+.++.++.....+...++|+++.|+|+|+.+++++|
T Consensus 206 ~~----~~~~s~~~g~~~~---------------~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l 266 (409)
T TIGR02079 206 AP----SMKASLEAGEVVT---------------LDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDL 266 (409)
T ss_pred CC----cHHHHHHCCCcee---------------cCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHH
Confidence 86 4456666676432 1235789999987777753233446678999999999999999999
Q ss_pred HHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 242 CRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 242 ~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
++++|++++|++|+++|+++++.++ .++++||+++|| |+.|++.+.+.+++
T Consensus 267 ~~~~gi~ve~agaa~lAa~~~~~~~-~~~~~Vv~ilsG-gn~d~~~~~~~~~~ 317 (409)
T TIGR02079 267 YNLEGIVAEPAGALSIAALERLGEE-IKGKTVVCVVSG-GNNDIERTEEIRER 317 (409)
T ss_pred HHhcCceecchHHHHHHHHHhhhhh-cCCCeEEEEECC-CCCCHHHHHHHHHH
Confidence 9999999999999999999987655 368899999997 79999999888765
No 26
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-40 Score=308.17 Aligned_cols=247 Identities=21% Similarity=0.227 Sum_probs=195.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCcee
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYY 88 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (295)
+++| ++|+||||+|+|++|+++|++|+||||++.+ ..|++.++.|||+|+.++++++++...+ ++++++ .+.+|
T Consensus 74 ~gvv-~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~---~~k~~~~~~~GA~Vv~~~~~~~~a~~~a-~~la~~-~~~~~ 147 (406)
T PRK06382 74 NGVI-TASAGNHAQGVAYAASINGIDAKIVMPEYTI---PQKVNAVEAYGAHVILTGRDYDEAHRYA-DKIAMD-ENRTF 147 (406)
T ss_pred CeEE-EECCCHHHHHHHHHHHHcCCCEEEEEcCCCH---HHHHHHHHHcCCEEEEECCCHHHHHHHH-HHHHHh-cCCEe
Confidence 3455 5789999999999999999999999999754 3578899999999999999888887666 456665 24455
Q ss_pred eeCcccCCCCCc-hhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCCc
Q 022573 89 LTGTVVGPHPCP-IMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDS 166 (295)
Q Consensus 89 ~~~~~~~~~p~~-~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~~ 166 (295)
+ |||+ .++++|++|++.|+. +|++ .||+||+|+|+||+++|++.+|+. .|++|||+|||.+++
T Consensus 148 v-------~~~~~~~~i~g~~t~~~Ei~----eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~--- 212 (406)
T PRK06382 148 I-------EAFNDRWVISGQGTIGLEIM----EDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSD--- 212 (406)
T ss_pred c-------CccCChHHHHHHHHHHHHHH----HhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCCh---
Confidence 4 4443 246789888776665 5554 699999999999999999999985 899999999999985
Q ss_pred cchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhC
Q 022573 167 GKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEG 246 (295)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~g 246 (295)
.+..++..|+... ....+++++|+.++.++.....+...++|+++.|+|+|+++++++|++++|
T Consensus 213 -~~~~~~~~~~~~~---------------~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~g 276 (406)
T PRK06382 213 -SMKASLREGKIVA---------------HTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREK 276 (406)
T ss_pred -HHHHHHHcCCcee---------------cCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcC
Confidence 4455666665432 123578999998765543223456678899999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 247 IFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 247 i~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
+++||++|+++++++..... .++++||+++|| |+.+++.+.+.+.+
T Consensus 277 i~~epsga~~laal~~~~~~-~~~~~Vv~i~sG-Gn~d~~~~~~~~~~ 322 (406)
T PRK06382 277 IVAEPSGAVGLAAIMEGKVD-VKGKKVAIVVSG-GNINPLLMSKIIYK 322 (406)
T ss_pred ceechHHHHHHHHHHhcccc-CCCCEEEEEeCC-CCCCHHHHHHHHHH
Confidence 99999999999987654322 357899999997 79998888776543
No 27
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=1.5e-40 Score=309.10 Aligned_cols=249 Identities=21% Similarity=0.291 Sum_probs=198.8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCE---EEEecCchhHHHHHHHHHHHhccC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ---VKAVDGCFKEASSEAIRNWVGNLE 84 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~---v~~~~~~~~~~~~~~~~~~~~~~~ 84 (295)
.++ |+++|+||||+++|++|+++|++|+||||++.+ +.|++.++.|||+ |+..+.+++++.+.+. +++++ .
T Consensus 73 ~~~-Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~---~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~-~~a~~-~ 146 (420)
T PRK08639 73 AAG-VVCASAGNHAQGVAYACRHLGIPGVIFMPVTTP---QQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQ-EYAEE-T 146 (420)
T ss_pred CCE-EEEECccHHHHHHHHHHHHcCCCEEEEECCCCh---HHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHH-HHHHh-c
Confidence 344 455789999999999999999999999999754 3678899999996 4555667888887774 56655 2
Q ss_pred CceeeeCcccCCCCCch-hhhhhhhhhhHHHHHHHHHHhCCC--CCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecC
Q 022573 85 KSYYLTGTVVGPHPCPI-MVREFQSIIGKETRKQAMEKWGGK--PDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAA 160 (295)
Q Consensus 85 ~~~~~~~~~~~~~p~~~-~~~~g~~~~~~e~~~ei~~q~~~~--~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~ 160 (295)
+.+|+ |||++ .+++||+|++.|+. +|++.. ||+||+|+|+||+++|++.++|. .|++|||+|||.
T Consensus 147 g~~~~-------~~~~~~~~~~G~~tig~EI~----eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~ 215 (420)
T PRK08639 147 GATFI-------PPFDDPDVIAGQGTVAVEIL----EQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPA 215 (420)
T ss_pred CCccc-------CCCCChhHhcchhHHHHHHH----HhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 44444 44432 46789988876665 455444 99999999999999999999985 899999999999
Q ss_pred CCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHH
Q 022573 161 GFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQR 240 (295)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~ 240 (295)
+++ .+..++..|.+... ....++++|+.++.++.....+...++|+++.|+|+|+.+++++
T Consensus 216 ~~~----~~~~s~~~g~~~~~---------------~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~ 276 (420)
T PRK08639 216 GAA----SMKAALEAGKPVTL---------------EKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILE 276 (420)
T ss_pred CCC----cHHHHHhCCCceeC---------------CCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 986 44667777765422 23578899998776765433355667899999999999999999
Q ss_pred HHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 241 LCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 241 l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
|++++|++++|++|+++++++++.+++ ++++||+++|| |+.+++.+.+.+++
T Consensus 277 l~~~~gi~~e~sga~~lAal~~~~~~~-~~~~vv~v~sG-gn~d~~~~~~~~~~ 328 (420)
T PRK08639 277 LYNKEGIVAEPAGALSIAALELYKDEI-KGKTVVCVISG-GNNDIERMPEIKER 328 (420)
T ss_pred HHHhcCceecchHHHHHHHHHhhhhhc-CCCeEEEEeCC-CCCCHHHHHHHHHH
Confidence 999999999999999999999876554 78999999997 79999999887654
No 28
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=7.9e-41 Score=308.99 Aligned_cols=257 Identities=26% Similarity=0.342 Sum_probs=201.6
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
.|++.|.+++|+ +|+||||+|+|++|+++|++|+||||++.+ +.|+++++.+||+|+.++++++++...+ ++.++
T Consensus 121 ~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~v~vp~~~~---~~k~~~~~~~GA~Vi~v~~~~~~~~~~a-~~~~~ 195 (394)
T PRK08197 121 RAKELGVKHLAM-PTNGNAGAAWAAYAARAGIRATIFMPADAP---EITRLECALAGAELYLVDGLISDAGKIV-AEAVA 195 (394)
T ss_pred HHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEEcCCCC---HHHHHHHHHcCCEEEEECCCHHHHHHHH-HHHHH
Confidence 366778887776 689999999999999999999999999754 4688999999999999999888876555 44555
Q ss_pred ccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCC-CCCEEEEecCCchhHHHhhhhhhc--------CCCc
Q 022573 82 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG-KPDVLLACVGSGSNALGLFHEFIN--------DEDV 152 (295)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~-~~d~vvv~vG~Gg~~~G~~~~~~~--------~~~~ 152 (295)
+ .++|..+++. ||+. ++|++|+++|+. +|++. .||+||+|+|+||+++|++++|++ .+.+
T Consensus 196 ~--~g~~~~~~~~--np~~---ieG~~t~a~Ei~----eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p 264 (394)
T PRK08197 196 E--YGWFDVSTLK--EPYR---IEGKKTMGLELA----EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRP 264 (394)
T ss_pred h--cCcccccCCC--Cccc---hhcHHHHHHHHH----HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCC
Confidence 4 3466666654 5553 578877766665 55553 499999999999999999999974 3889
Q ss_pred eEEEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCch---hHHHhhcCCceEEEe
Q 022573 153 RLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPE---ISFLRDTGRAEFYTA 229 (295)
Q Consensus 153 ~vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~---~~~~~~~~~~~~~~V 229 (295)
|+|+|||++++ .+..++..|..... ....++++++|+.++..... +..++ .+.+.++.|
T Consensus 265 ~ii~Vq~~g~~----~l~~~~~~g~~~~~-------------~~~~~~tia~gl~~~~~~~~~~~~~~~~-~~~g~~v~V 326 (394)
T PRK08197 265 RLVAVQAEGCA----PIVKAWEEGKEESE-------------FWEDAHTVAFGIRVPKALGDFLVLDAVR-ETGGCAIAV 326 (394)
T ss_pred eEEEEEeCCCC----HHHHHHHcCCCccc-------------cCCCCCceehhhhCCCCCCHHHHHHHHH-HhCCEEEEe
Confidence 99999999985 33455555543211 12245788888875543222 22333 456789999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCChHHHHHhH
Q 022573 230 TDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVDTVVNYR 292 (295)
Q Consensus 230 ~d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~~~~~~~~~ 292 (295)
+|+|+++++++|++++||+++|++|+++++++++.++ +.++++||+++||+|.+|++++.+.+
T Consensus 327 ~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~~~~~~ 391 (394)
T PRK08197 327 SDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDTVPVVV 391 (394)
T ss_pred CHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhhhhhhc
Confidence 9999999999999999999999999999999998764 66789999999999999999998875
No 29
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.9e-40 Score=308.01 Aligned_cols=250 Identities=23% Similarity=0.215 Sum_probs=199.2
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccC
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLE 84 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~ 84 (295)
+.+.+++|+ +|+||||+++|++|+++|++|+||||++.+ ..|+++++.|||+|+.++.+++++...+ ++++++
T Consensus 67 ~~~~~~vv~-aSsGN~g~alA~~a~~~G~~~~iv~p~~~~---~~k~~~~~~~GA~Vi~~~~~~~~~~~~a-~~~~~~-- 139 (404)
T PRK08198 67 EERARGVVA-ASAGNHAQGVAYAASLLGIKATIVMPETAP---LSKVKATRSYGAEVVLHGDVYDEALAKA-QELAEE-- 139 (404)
T ss_pred hhcCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHHh--
Confidence 344555555 689999999999999999999999999754 3678899999999999999999888766 456665
Q ss_pred CceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCC
Q 022573 85 KSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFG 163 (295)
Q Consensus 85 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~ 163 (295)
.++|..++|.| | ..++||+|++.|+. +|++ ++|+||+|+|+||+++|++.+||. .|++|||+|||.+++
T Consensus 140 ~g~~~~~~~~~--~---~~~~g~~t~a~EI~----~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~ 209 (404)
T PRK08198 140 TGATFVHPFDD--P---DVIAGQGTIGLEIL----EDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAP 209 (404)
T ss_pred cCCEecCCCCC--c---cHHHHHHHHHHHHH----HhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCCh
Confidence 24454455542 2 24678877776665 5554 589999999999999999999985 899999999999985
Q ss_pred CCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHH
Q 022573 164 LDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 243 (295)
Q Consensus 164 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~ 243 (295)
.+..++..|++... ....++++|+.++.++.....+.+.++|+++.|+|+|+++++++|++
T Consensus 210 ----~~~~~~~~g~~~~~---------------~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 270 (404)
T PRK08198 210 ----AMPESLAAGRPVEL---------------ESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLE 270 (404)
T ss_pred ----HHHHHHHcCCCEec---------------CCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 44556666655321 23578888887665554333456678999999999999999999999
Q ss_pred HhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhH
Q 022573 244 LEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR 292 (295)
Q Consensus 244 ~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~ 292 (295)
++|++++|++|+++++++++. ++.++++||+++|| |+.+.+.+...+
T Consensus 271 ~~g~~~e~sga~~lAal~~~~-~~~~~~~vv~vl~g-gn~~~~~l~~ii 317 (404)
T PRK08198 271 RAKLVVEGAGAVSVAALLSGK-LDVKGKKVVAVLSG-GNIDVLLLSRVI 317 (404)
T ss_pred hcCeEEehHHHHHHHHHHhch-hhcCCCeEEEEECC-CCCCHHHHHHHH
Confidence 999999999999999999876 44578999999997 789998887744
No 30
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.4e-40 Score=301.06 Aligned_cols=245 Identities=19% Similarity=0.247 Sum_probs=185.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc-hhH---HHHH---HHHHHHhc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC-FKE---ASSE---AIRNWVGN 82 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~-~~~---~~~~---~~~~~~~~ 82 (295)
.+|+++|+||||+|+|++|+++|++|+||||++.+ +.|+++++.+||+|+.+++. +++ ..+. ..+++.++
T Consensus 65 ~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~ 141 (330)
T PRK10717 65 GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQS---QEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVAS 141 (330)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhh
Confidence 44556899999999999999999999999999754 36889999999999999974 332 2212 22233333
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCC
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAG 161 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~ 161 (295)
.++.+|+++|+. ||. .+..|+.+++.|+ ++|++..+|+||+|+|+||+++|++.+|++ .|+++||+|||.+
T Consensus 142 ~~~~~~~~~~~~--~~~--~~~~g~~t~a~Ei----~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~ 213 (330)
T PRK10717 142 EPNGAIWANQFD--NPA--NREAHYETTGPEI----WEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTG 213 (330)
T ss_pred CCCCeEecCCCC--Chh--hHHHHHHhHHHHH----HHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 334677777765 332 1345666666555 566665799999999999999999999985 7899999999999
Q ss_pred CCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHH
Q 022573 162 FGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRL 241 (295)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l 241 (295)
++. ..++..|... ....++++|++.+.+... +....+|+++.|+|+|+++++++|
T Consensus 214 ~~~-----~~~~~~g~~~-----------------~~~~~~~~gl~~~~~~~~---~~~~~~d~~v~V~d~e~~~a~~~l 268 (330)
T PRK10717 214 SAL-----YSYYKTGELK-----------------AEGSSITEGIGQGRITAN---LEGAPIDDAIRIPDEEALSTAYRL 268 (330)
T ss_pred Ccc-----ccccccCCcC-----------------CCCCcccCcCCCCcCCcc---cChhhCCEEEEECHHHHHHHHHHH
Confidence 742 2233333321 124567777765433221 233356889999999999999999
Q ss_pred HHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHH
Q 022573 242 CRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 290 (295)
Q Consensus 242 ~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~ 290 (295)
++++|++++|++|+++++++++++++.++++||+++||+|.+|++++.+
T Consensus 269 ~~~~gi~vepssga~laa~~~l~~~~~~~~~Vv~v~~g~g~ky~~~~~~ 317 (330)
T PRK10717 269 LEEEGLCLGGSSGINVAAALRLARELGPGHTIVTILCDSGERYQSKLFN 317 (330)
T ss_pred HHhcCCeEeecHHHHHHHHHHHHHhcCCCCEEEEEECCCchhhcccccC
Confidence 9999999999999999999999877777899999999999999998754
No 31
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=3e-40 Score=306.84 Aligned_cols=258 Identities=24% Similarity=0.342 Sum_probs=201.2
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
.|++.|.+.+|+ +|+||||+|+|++|+++|++|+||||++.+ +.|+.+++.|||+|+.++++++++...+ +++++
T Consensus 131 ~A~~~g~~~vv~-aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~---~~k~~~~~~~GA~Vi~v~g~~d~a~~~a-~~~~~ 205 (421)
T PRK07591 131 AARELGFTTVAC-ASTGNLANSVAAHAARAGLDSCVFIPADLE---AGKIVGTLVYGPTLVAVDGNYDDVNRLC-SELAN 205 (421)
T ss_pred HHHHcCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEEcCCCC---HHHHHHHHHcCCEEEEECCCHHHHHHHH-HHHHH
Confidence 367778887766 689999999999999999999999999743 4688999999999999999988876555 45665
Q ss_pred ccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCC-CCCEEEEecCCchhHHHhhhhhhc--------CCCc
Q 022573 82 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG-KPDVLLACVGSGSNALGLFHEFIN--------DEDV 152 (295)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~-~~d~vvv~vG~Gg~~~G~~~~~~~--------~~~~ 152 (295)
+.+ ++|..++ |.+||. ++|++|+++|+. +|++. .||+||+|+|+||+++|++.+|++ .+.+
T Consensus 206 ~~~-~~~~~n~--~~~p~~---ieG~~Tia~Ei~----eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~p 275 (421)
T PRK07591 206 EHE-GWGFVNI--NLRPYY---AEGSKTLGYEVA----EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPV 275 (421)
T ss_pred hcC-CEEEecC--CCCccc---ccchHHHHHHHH----HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCc
Confidence 532 4555444 236664 579988877765 55543 499999999999999999999974 4789
Q ss_pred eEEEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCC--CchhHHHhhcCCceEEEeC
Q 022573 153 RLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGV--GPEISFLRDTGRAEFYTAT 230 (295)
Q Consensus 153 ~vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~--~~~~~~~~~~~~~~~~~V~ 230 (295)
|||+|||++++ .+..+++.|..... ...++++++++..+.. +.....+.+.+.+.++.|+
T Consensus 276 rii~Vq~~g~~----~~~~~~~~g~~~~~--------------~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vs 337 (421)
T PRK07591 276 RVFGAQAEGCS----PIAQAFKEGRDVVK--------------PVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVT 337 (421)
T ss_pred eEEEEecCCCC----HHHHHHHcCCCccc--------------CCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEEC
Confidence 99999999975 34555655543210 1125788888864322 2222233445567899999
Q ss_pred HHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--CCCCCCeEEEEecCCCcCChHHHHHhH
Q 022573 231 DQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCP--TLPNGAKVVVNCSGGGDKDVDTVVNYR 292 (295)
Q Consensus 231 d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~--~~~~~~~vv~v~tg~g~~~~~~~~~~~ 292 (295)
|+|+++++++|++++||+++|++|+++++++++.+ .+.++++||+++||+|++|++.+.+.+
T Consensus 338 d~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~~~~~~ 401 (421)
T PRK07591 338 DEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEAVAGYV 401 (421)
T ss_pred HHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHHHHHhc
Confidence 99999999999999999999999999999999886 467889999999999999999886543
No 32
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=5.9e-40 Score=302.68 Aligned_cols=256 Identities=18% Similarity=0.195 Sum_probs=197.3
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeee
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLT 90 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (295)
+|+++|+||||+|+|++|+.+|++|+||||++.+ +.|++.++.+||+|+.++++++++...+. +++++ .+.+|+.
T Consensus 118 ~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~---~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~-~~~~~-~g~~~v~ 192 (399)
T PRK08206 118 TFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSS---EERVDAIRALGAECIITDGNYDDSVRLAA-QEAQE-NGWVVVQ 192 (399)
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCHHHHHHHHH-HHHHH-cCCEEec
Confidence 4667899999999999999999999999999754 35788999999999999999888876664 45554 2334442
Q ss_pred C----cccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc---CCCceEEEeecCCCC
Q 022573 91 G----TVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN---DEDVRLIGVEAAGFG 163 (295)
Q Consensus 91 ~----~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~---~~~~~vi~ve~~~~~ 163 (295)
+ ++.| ++.++++|++|++.|+.+|+.. .+..||+||+|+|+||+++|++.+|++ .+.+|||+|||++++
T Consensus 193 ~~~~~~~~~---~~~~~~~G~~t~a~EI~eQl~~-~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~ 268 (399)
T PRK08206 193 DTAWEGYEE---IPTWIMQGYGTMADEAVEQLKE-MGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQAD 268 (399)
T ss_pred CccccCccc---ccHHHHHHhHHHHHHHHHHHHh-cCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCc
Confidence 2 2321 1234678999988888766532 123699999999999999999999974 357999999999985
Q ss_pred CCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHH
Q 022573 164 LDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 243 (295)
Q Consensus 164 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~ 243 (295)
.+..++..|.....+ ..++++++|+.++.++.....+....+|+++.|+|+|+.+++++|++
T Consensus 269 ----~l~~s~~~g~~~~~~--------------~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~ 330 (399)
T PRK08206 269 ----CLYQSAVDGKPVAVT--------------GDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILAN 330 (399)
T ss_pred ----hHHHHHHcCCcEEeC--------------CCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhc
Confidence 345567666544221 11368999987654443323345567899999999999999999996
Q ss_pred ----HhCCCCCcchhhHHHHHHHhc-----------CCCCCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 244 ----LEGIFPALEASHALAFLEKLC-----------PTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 244 ----~~gi~~~~ssa~a~aa~~~~~-----------~~~~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
++|++++|++|+++++++++. ..+.++++||+|+|| |+++.+.+.+.+..
T Consensus 331 ~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~iltg-G~~d~~~~~~~~~~ 395 (399)
T PRK08206 331 PLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLISTE-GDTDPDRYREIVWE 395 (399)
T ss_pred ccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEECC-CCCCHHHHHHHhcC
Confidence 789999999999999999764 234568999999995 89999999887643
No 33
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-41 Score=276.06 Aligned_cols=248 Identities=19% Similarity=0.235 Sum_probs=206.1
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccC
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLE 84 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~ 84 (295)
++.++.+|+ .||||||+|+|++|+.+|+||+||||.+.|. -|+..++.|||+|+.++...+ .++...+++.++
T Consensus 70 ek~~kgvit-hSSGNHaqAlalaAk~~giPa~IVvP~~AP~---~Kv~a~~~Yga~ii~~e~~~~-sRE~va~~ltee-- 142 (323)
T KOG1251|consen 70 EKRAKGVIT-HSSGNHAQALALAAKILGIPATIVVPKDAPI---CKVAATRGYGANIIFCEPTVE-SRESVAKDLTEE-- 142 (323)
T ss_pred hhhcCceEe-ecCCcHHHHHHHHHHhcCCCeEEEecCCChH---HHHHHHHhcCceEEEecCccc-hHHHHHHHHHHh--
Confidence 567777887 5899999999999999999999999998875 578899999999999999544 444444566666
Q ss_pred CceeeeCcccCCCCCch-hhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCC
Q 022573 85 KSYYLTGTVVGPHPCPI-MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGF 162 (295)
Q Consensus 85 ~~~~~~~~~~~~~p~~~-~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~ 162 (295)
.++|+. +||.. .++.||+|++.|+.+|+ + .+|.+|||+|+||+++|++...+. .|+++|++|||+..
T Consensus 143 ~g~~~i------~Py~~p~vIaGqgTiA~ElleqV----g-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a 211 (323)
T KOG1251|consen 143 TGYYLI------HPYNHPSVIAGQGTIALELLEQV----G-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAA 211 (323)
T ss_pred cCcEEe------CCCCCcceeeccchHHHHHHHhh----C-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCccc
Confidence 345553 67754 57899999998887555 3 589999999999999999988774 89999999999988
Q ss_pred CCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHH
Q 022573 163 GLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLC 242 (295)
Q Consensus 163 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~ 242 (295)
+ .-++++..|.... +.++.||+||++...+|+.-+-+.+.++|++++|+|+|+.++++.++
T Consensus 212 ~----d~~qsf~~g~I~~---------------l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ 272 (323)
T KOG1251|consen 212 D----DGQQSFLKGKIVH---------------LDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIW 272 (323)
T ss_pred c----hHHHHHhcCCeEe---------------cCCchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHHHHH
Confidence 5 4467777777654 44789999999988888765556777799999999999999999999
Q ss_pred HHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHh
Q 022573 243 RLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291 (295)
Q Consensus 243 ~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~ 291 (295)
++..+.++|+++.++||++....++ ..+++.++++| ||.|+..+..+
T Consensus 273 ermK~~vEPTa~lgfAavl~~k~~~-~~K~igIiLsG-GNVD~~~~~s~ 319 (323)
T KOG1251|consen 273 ERMKVVVEPTAALGFAAVLSHKFAL-NIKRIGIILSG-GNVDLNSWASF 319 (323)
T ss_pred HHHheeeccchhHHHHHHHhhhHHh-ccCceEEEEeC-Ccccccchhhe
Confidence 9999999999999999998765543 47899999997 79998876544
No 34
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=4.6e-40 Score=296.83 Aligned_cols=251 Identities=23% Similarity=0.220 Sum_probs=194.1
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCC
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEK 85 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~ 85 (295)
.+.+++| ++|+||||+|+|++|+.+|++|+||||++.+ +.|+++++.+||+|+.++++++++...+ ++++++.
T Consensus 73 ~~~~~vv-~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~a-~~~a~~~-- 145 (333)
T PRK08638 73 EKRKGVV-ACSAGNHAQGVALSCALLGIDGKVVMPKGAP---KSKVAATCGYGAEVVLHGDNFNDTIAKV-EEIVEEE-- 145 (333)
T ss_pred hcCCeEE-EeCCcHHHHHHHHHHHHcCCCEEEEeCCCCc---HHHHHHHHHcCCEEEEECcCHHHHHHHH-HHHHHhc--
Confidence 3445544 5789999999999999999999999999754 3588899999999999999888887665 4566652
Q ss_pred ceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCC
Q 022573 86 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~ 164 (295)
++|..+++. ||+ .++||++++.|+. +|+. ++|+||+|+|+||+++|++.+||. .|++|||+|||.+++
T Consensus 146 g~~~~~~~~--~~~---~~~g~~t~a~Ei~----~q~~-~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~- 214 (333)
T PRK08638 146 GRTFIPPYD--DPK---VIAGQGTIGLEIL----EDLW-DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVH- 214 (333)
T ss_pred CCEEcCcCC--Ccc---hhccccHHHHHHH----hhcC-CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCc-
Confidence 345555654 332 3578877776665 5553 589999999999999999999985 899999999999985
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 244 (295)
.+..++..|.... ...+.++++|+.++.++.....+.+.++|+++.|+|+|+++++++|+++
T Consensus 215 ---~~~~s~~~g~~~~---------------~~~~~ti~~gl~~~~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~ 276 (333)
T PRK08638 215 ---GMAASFYAGEITT---------------HRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQR 276 (333)
T ss_pred ---hHHHHHHCCCccc---------------CCCCCCeeccccCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 4566776665542 1234578888765433332122345678999999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhcC-CCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 245 EGIFPALEASHALAFLEKLCP-TLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 245 ~gi~~~~ssa~a~aa~~~~~~-~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
+|++++|++|+++++++.... +..++++||+++|| |++|++.+.+.+.
T Consensus 277 ~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~G-gn~~~~~~~~~~~ 325 (333)
T PRK08638 277 NKVVTEGAGALATAALLSGKLDQYIQNKKVVAIISG-GNVDLSRVSQITG 325 (333)
T ss_pred cCCeechhHHHHHHHHHhCCcccccCCCcEEEEECC-CCCCHHHHHHHHH
Confidence 999999998888888775432 22367899999997 8999999998765
No 35
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=5.6e-40 Score=293.34 Aligned_cols=242 Identities=22% Similarity=0.274 Sum_probs=183.6
Q ss_pred ccccCC---cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHH
Q 022573 3 AKRMGR---KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIR 77 (295)
Q Consensus 3 a~~~~~---~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~ 77 (295)
|++.|. +.+|+++|+||||+|+|++|+++|++|+||||++.+ +.|+++|+.+||+|+.+++++ .++.+.+ +
T Consensus 48 a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a-~ 123 (298)
T TIGR01139 48 AEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMS---IERRKLLKAYGAELVLTPGAEGMKGAIAKA-E 123 (298)
T ss_pred HHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccC---HHHHHHHHHcCCEEEEECCCCCHHHHHHHH-H
Confidence 344444 344566899999999999999999999999999754 357889999999999999975 3555544 4
Q ss_pred HHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEE
Q 022573 78 NWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIG 156 (295)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ 156 (295)
+++++.+..|++.+++.|+. . ++.|+.+++.|+ ++|++..||+||+|+|+||+++|++.+|++ .|++|||+
T Consensus 124 ~~~~~~~~~~~~~~~~~n~~--~--~~~g~~t~~~Ei----~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~ 195 (298)
T TIGR01139 124 EIAASTPNSYFMLQQFENPA--N--PEIHRKTTGPEI----WRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVA 195 (298)
T ss_pred HHHHhCCCcEEcccccCCcc--c--HHHHHHHHHHHH----HHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEE
Confidence 56666433476777775332 1 235666666555 566655699999999999999999999985 78999999
Q ss_pred eecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHH
Q 022573 157 VEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQ 236 (295)
Q Consensus 157 ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~ 236 (295)
|||.+++. +...+. ..+..+|++...+.. .+.....|.++.|+|+|+++
T Consensus 196 Ve~~~~~~--------~~~~~~--------------------~~~~~~gl~~~~~~~---~~~~~~~d~~~~V~d~e~~~ 244 (298)
T TIGR01139 196 VEPAESPV--------LSGGKP--------------------GPHKIQGIGAGFIPK---NLNRSVIDEVITVSDEEAIE 244 (298)
T ss_pred EecCCCcc--------cCCCCC--------------------CCCCCCCCCCCCCCC---ccChhhCCEEEEECHHHHHH
Confidence 99999742 211111 011223443221221 13344578999999999999
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHH
Q 022573 237 AYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 287 (295)
Q Consensus 237 a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~ 287 (295)
++++|++++|++++|++|+++++++++.+++.++++||+++||+|.+|+++
T Consensus 245 a~~~l~~~~gi~~~pssga~laa~~~~~~~~~~~~~vv~v~~d~G~ky~~~ 295 (298)
T TIGR01139 245 TARRLAAEEGILVGISSGAAVAAALKLAKRPEPDKLIVVILPSTGERYLST 295 (298)
T ss_pred HHHHHHHhcCceEcccHHHHHHHHHHHHHhcCCCCEEEEEECCCCccccCc
Confidence 999999999999999999999999999877767899999999999999985
No 36
>PLN02565 cysteine synthase
Probab=100.00 E-value=4.1e-40 Score=295.83 Aligned_cols=234 Identities=20% Similarity=0.259 Sum_probs=180.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--chhHHHHHHHHHHHhccCCce
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVGNLEKSY 87 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~~~~~~~~~~~~~~~~~~~~~ 87 (295)
+.|+++|+||||+|+|++|+.+|++|+||||++.+ +.|+++++.|||+|+.++. +++++.+.+ ++++++. +++
T Consensus 68 ~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a-~~l~~~~-~~~ 142 (322)
T PLN02565 68 SVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMS---LERRIILLAFGAELVLTDPAKGMKGAVQKA-EEILAKT-PNS 142 (322)
T ss_pred cEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCc---HHHHHHHHHcCCEEEEeCCCCCcHHHHHHH-HHHHHhC-CCc
Confidence 34566799999999999999999999999999754 4688999999999999987 346666555 4566553 346
Q ss_pred eeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCCc
Q 022573 88 YLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDS 166 (295)
Q Consensus 88 ~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~~ 166 (295)
|+.+||.|+.+ ...|+.|++ .||++|++..||+||+|+|+||+++|++.+||+ .|.+|||+|||.++++
T Consensus 143 ~~~~q~~n~~n----~~~~~~t~a----~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~-- 212 (322)
T PLN02565 143 YILQQFENPAN----PKIHYETTG----PEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAV-- 212 (322)
T ss_pred EeecccCCHhH----HHHHHHHHH----HHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCcc--
Confidence 67777764421 123555555 555677766799999999999999999999985 8999999999999852
Q ss_pred cchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhC
Q 022573 167 GKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEG 246 (295)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~g 246 (295)
+..|.+. ++ ..+|++...+... +....+|+++.|+|+|+++++++|++++|
T Consensus 213 ------~~~g~~~-------------------~~-~~~glg~~~~~~~---~~~~~vd~~v~V~d~ea~~a~~~l~~~~g 263 (322)
T PLN02565 213 ------LSGGKPG-------------------PH-KIQGIGAGFIPGV---LDVDLLDEVVQVSSDEAIETAKLLALKEG 263 (322)
T ss_pred ------ccCCCCC-------------------Cc-cCCCCCCCCCCCc---CCHhHCCEEEEECHHHHHHHHHHHHHHhC
Confidence 2223221 22 2245543222211 22356789999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHhcCCC-CCCCeEEEEecCCCcCChHH
Q 022573 247 IFPALEASHALAFLEKLCPTL-PNGAKVVVNCSGGGDKDVDT 287 (295)
Q Consensus 247 i~~~~ssa~a~aa~~~~~~~~-~~~~~vv~v~tg~g~~~~~~ 287 (295)
++++|++|++++++++++++. .++++||+++||+|.+|+++
T Consensus 264 i~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~ 305 (322)
T PLN02565 264 LLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSS 305 (322)
T ss_pred cEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCc
Confidence 999999999999999998754 46789999999999999987
No 37
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-39 Score=294.49 Aligned_cols=253 Identities=18% Similarity=0.212 Sum_probs=193.0
Q ss_pred ccccCCc-EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 3 AKRMGRK-SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 3 a~~~~~~-~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
|++.|.. ..|+++|+||||+++|++|+++|++|+||||++.+ +.|+++++.+||+|+.++. .+++.+.+ ++ .+
T Consensus 65 a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~---~~k~~~l~~~GA~V~~~~~-~~~~~~~a-~~-~~ 138 (338)
T PRK06608 65 LKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTS---KVKQQAALYYGGEVILTNT-RQEAEEKA-KE-DE 138 (338)
T ss_pred hhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhCCCEEEEECC-HHHHHHHH-HH-HH
Confidence 4555651 34455789999999999999999999999999753 3588899999999999976 45555554 33 33
Q ss_pred ccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecC
Q 022573 82 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAA 160 (295)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~ 160 (295)
+ ++ +|..+++.| | ..++|+++++.|+ ++|++..||+||+|+|+|||++|++.+++. .+.++||+|||.
T Consensus 139 ~-~~-~~~~~~~~~--~---~~~~g~~t~a~Ei----~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~ 207 (338)
T PRK06608 139 E-QG-FYYIHPSDS--D---STIAGAGTLCYEA----LQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPL 207 (338)
T ss_pred h-CC-CEEcCCCCC--H---HHhccHHHHHHHH----HHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeC
Confidence 2 33 444455432 2 2356777766555 566665799999999999999999999875 889999999999
Q ss_pred CCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCch-hHHHhhcCCceEEEeCHHHHHHHHH
Q 022573 161 GFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPE-ISFLRDTGRAEFYTATDQEAVQAYQ 239 (295)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~-~~~~~~~~~~~~~~V~d~e~~~a~~ 239 (295)
+++ .+..++..|...... ..+.++++|+.++.++.. +..+.. +|+++.|+|+|+.++++
T Consensus 208 ~~~----~~~~s~~~g~~~~~~--------------~~~~t~~~gl~~~~~~~~~~~~~~~--~d~~v~Vsd~e~~~a~~ 267 (338)
T PRK06608 208 NAN----DAYLSLKNNKIYRLN--------------YSPNTIADGLKTLSVSARTFEYLKK--LDDFYLVEEYEIYYWTA 267 (338)
T ss_pred CCh----HHHHHHHcCCeEeCC--------------CCCCCeecccCCCCCCHHHHHHHHh--CCCEEEECHHHHHHHHH
Confidence 985 345566666543211 134688999887655543 333332 58899999999999999
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 240 RLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 240 ~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
+|++.+|++++|++|+++++++++.++..++++||+++|| |+++...+.+...
T Consensus 268 ~l~~~~gi~vepssaa~laa~~~~~~~~~~~~~Vv~v~tg-g~~d~~~~~~~~~ 320 (338)
T PRK06608 268 WLTHLLKVICEPSSAINMVAVVNWLKTQSKPQKLLVILSG-GNIDPILYNELWK 320 (338)
T ss_pred HHHHHcCcEEchHHHHHHHHHHhhchhhcCCCeEEEEeCC-CccCHHHHHHHHH
Confidence 9999999999999999999999987766678999999998 7888887777544
No 38
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.2e-39 Score=290.41 Aligned_cols=239 Identities=23% Similarity=0.286 Sum_probs=184.1
Q ss_pred ccccCC---cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch----hHHHHHH
Q 022573 3 AKRMGR---KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF----KEASSEA 75 (295)
Q Consensus 3 a~~~~~---~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~----~~~~~~~ 75 (295)
|++.++ +..|+++|+||||+|+|++|+++|++|+||||++.+ +.|+++++.+||+|+.++.++ +++.+.+
T Consensus 44 a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~---~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a 120 (291)
T cd01561 44 AEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMS---EEKRKLLRALGAEVILTPEAEADGMKGAIAKA 120 (291)
T ss_pred HHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHH
Confidence 344554 244555799999999999999999999999999743 468899999999999999976 5565444
Q ss_pred HHHHHhccCCceeeeCcccCCCCCchhhhhhhh-hhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCce
Q 022573 76 IRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQS-IIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVR 153 (295)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~-~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~ 153 (295)
+++.++. +++|+.+++. ||+ .+.||. +++.|+ .+|++..||+||+|+|+||+++|++.+|+. .|.++
T Consensus 121 -~~~~~~~-~~~~~~~~~~--~p~---~~~g~~~t~~~Ei----~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~ 189 (291)
T cd01561 121 -RELAAET-PNAFWLNQFE--NPA---NPEAHYETTAPEI----WEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVR 189 (291)
T ss_pred -HHHHhhC-CCcEEecCCC--Cch---HHHHHHHHHHHHH----HHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCE
Confidence 4566553 3577766654 443 235653 665555 466655799999999999999999999985 78999
Q ss_pred EEEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHH
Q 022573 154 LIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQE 233 (295)
Q Consensus 154 vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e 233 (295)
||+|||.+++. +..+. ...++++|++.+.+.. .+...++++++.|+|+|
T Consensus 190 vi~Ve~~~~~~--------~~~~~--------------------~~~~~~~gi~~~~~~~---~~~~~~~~~~~~V~d~e 238 (291)
T cd01561 190 IVGVDPVGSVL--------FSGGP--------------------PGPHKIEGIGAGFIPE---NLDRSLIDEVVRVSDEE 238 (291)
T ss_pred EEEEecCCCcc--------cCCCC--------------------CCCCcCCCCCCCCCCC---ccCchhCceeEEECHHH
Confidence 99999999752 11111 1344556665432221 24445778999999999
Q ss_pred HHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChH
Q 022573 234 AVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 286 (295)
Q Consensus 234 ~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~ 286 (295)
+++++++|++++|++++|++|++++++++++++.+++++||+++||+|.+|+|
T Consensus 239 ~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 239 AFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS 291 (291)
T ss_pred HHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcCCCCeEEEEECCCccccCC
Confidence 99999999999999999999999999999987766789999999999999975
No 39
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-39 Score=292.77 Aligned_cols=252 Identities=21% Similarity=0.182 Sum_probs=192.2
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+++.+.+..|+++|+||||+|+|++|+++|++|+||||+..+ +.|+++++.|||+|+.++++++++.+.+ +++.++
T Consensus 61 a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~a-~~~~~~ 136 (322)
T PRK07476 61 LSAQERARGVVTASTGNHGRALAYAARALGIRATICMSRLVP---ANKVDAIRALGAEVRIVGRSQDDAQAEV-ERLVRE 136 (322)
T ss_pred hhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCC---HHHHHHHHHcCCEEEEECCCHHHHHHHH-HHHHHh
Confidence 344555543445689999999999999999999999999754 3588899999999999999888887666 455555
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCC
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAG 161 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~ 161 (295)
. +.+| .+++. ||+ .++||++++.|+. +|+. .+|+||+|+|+||+++|++.+||. .|++|||+|||.+
T Consensus 137 ~-g~~~-~~~~~--n~~---~~~g~~t~~~Ei~----~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~ 204 (322)
T PRK07476 137 E-GLTM-VPPFD--DPR---IIAGQGTIGLEIL----EALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMER 204 (322)
T ss_pred c-CCEE-eCCCC--Ccc---eeechhHHHHHHH----HhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 2 3344 45554 332 3578877776665 5554 589999999999999999999985 8899999999998
Q ss_pred CCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCC--chh-HHHhhcCCceEEEeCHHHHHHHH
Q 022573 162 FGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVG--PEI-SFLRDTGRAEFYTATDQEAVQAY 238 (295)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~--~~~-~~~~~~~~~~~~~V~d~e~~~a~ 238 (295)
++ .+..++..|.... ...+.++++|+.. +.+ ... ..+....+|+++.|+|+|+++++
T Consensus 205 ~~----~~~~s~~~g~~~~---------------~~~~~t~a~~l~~-~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~ 264 (322)
T PRK07476 205 GA----AMHASLAAGRPVQ---------------VEEVPTLADSLGG-GIGLDNRYTFAMCRALLDDVVLLDEAEIAAGI 264 (322)
T ss_pred ch----HHHHHHHcCCcee---------------CCCCCCccccccc-cccCCcHHHHHHHHhcCCeEEEECHHHHHHHH
Confidence 75 3456666665432 1235778887752 222 222 23455678999999999999999
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCCCCC-CCeEEEEecCCCcCChHHHHHhHh
Q 022573 239 QRLCRLEGIFPALEASHALAFLEKLCPTLPN-GAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 239 ~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~-~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
++|++++|++++|+++++++++++.. +.+ +++||+++|| ++.+.+.+.+.+.
T Consensus 265 ~~l~~~~gi~ve~a~a~~laal~~~~--~~~~~~~Vvvi~tG-g~~~~~~~~~~~~ 317 (322)
T PRK07476 265 RHAYREERLVVEGAGAVGIAALLAGK--IAARDGPIVVVVSG-ANIDMELHRRIIN 317 (322)
T ss_pred HHHHHhcCceEeChhHHHHHHHHhCC--cccCCCcEEEEECC-CCCCHHHHHHHHh
Confidence 99999999999999999999998432 334 3899999998 6889998888664
No 40
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=3.7e-39 Score=294.56 Aligned_cols=255 Identities=20% Similarity=0.204 Sum_probs=196.0
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCce
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSY 87 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (295)
..++| ++|+||||+|+|++|+.+|++|+||||++.+ +.|+.+++.+||+|+.++++++++...+ ++++++ .++
T Consensus 94 ~~~vv-~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~---~~k~~~i~~~GAeVi~v~~~~~~a~~~a-~~~~~~--~g~ 166 (376)
T TIGR01747 94 QATFA-TATDGNHGRGVAWAAQQLGQKAVVYMPKGSA---QERVENILNLGAECTITDMNYDDTVRLA-MQMAQQ--HGW 166 (376)
T ss_pred CCEEE-EECccHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHHh--cCc
Confidence 44555 5789999999999999999999999999754 3688899999999999999998887665 455554 234
Q ss_pred eeeC-----cccCCCCCchhhhhhhhhhhHHHHHHHHHHhC-CCCCEEEEecCCchhHHHhhhhhhc--CC-CceEEEee
Q 022573 88 YLTG-----TVVGPHPCPIMVREFQSIIGKETRKQAMEKWG-GKPDVLLACVGSGSNALGLFHEFIN--DE-DVRLIGVE 158 (295)
Q Consensus 88 ~~~~-----~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~-~~~d~vvv~vG~Gg~~~G~~~~~~~--~~-~~~vi~ve 158 (295)
|+.+ +++|.+| ++++||+|++.|+.+|+.. .+ ..||+||+|+|+||+++|++.+++. .+ .++||+||
T Consensus 167 ~~~~~~~~~~~~~~~~---~ii~G~~Tia~Ei~eQl~~-~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Ve 242 (376)
T TIGR01747 167 VVVQDTAWEGYEKIPT---WIMQGYATLADEAVEQLRE-MGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVE 242 (376)
T ss_pred EEeccccccccccCCc---hHHHHHHHHHHHHHHHhhc-cCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 4443 3433334 3689999988888766521 11 2699999999999999999998863 33 47999999
Q ss_pred cCCCCCCccchhhhhcc--CceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHH
Q 022573 159 AAGFGLDSGKHAATLAK--GEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQ 236 (295)
Q Consensus 159 ~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~ 236 (295)
|.+++ ++..++.. |++...+ ..++|+++||.++.++...+.+.+...+.++.|+|+|+.+
T Consensus 243 p~ga~----~~~~s~~~~~g~~~~~~--------------~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~ 304 (376)
T TIGR01747 243 PDKAD----CLYQSAVKKDGDIVNVG--------------GDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAK 304 (376)
T ss_pred eCCCC----HHHHHHHhcCCCeEEcC--------------CCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHH
Confidence 99996 56677654 5543211 0257999999876665543445556678999999999999
Q ss_pred HHHHHHHHh----CCCCCcchhhHHHHHHHhcC-----------CCCCCCeEEEEecCCCcCChHHHHHhH
Q 022573 237 AYQRLCRLE----GIFPALEASHALAFLEKLCP-----------TLPNGAKVVVNCSGGGDKDVDTVVNYR 292 (295)
Q Consensus 237 a~~~l~~~~----gi~~~~ssa~a~aa~~~~~~-----------~~~~~~~vv~v~tg~g~~~~~~~~~~~ 292 (295)
+|++|++.. ++++||++|++++++...+. .+.++++||+++|| |+.+.+.|.+.+
T Consensus 305 A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~t~-gn~d~~~~~~~~ 374 (376)
T TIGR01747 305 GMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVISTE-GDTDPDHYREIV 374 (376)
T ss_pred HHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEeCC-CCCCHHHHHHHh
Confidence 999999855 59999999999988874332 25567999999997 799999998765
No 41
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2.8e-39 Score=298.45 Aligned_cols=259 Identities=17% Similarity=0.098 Sum_probs=199.0
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeee
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLT 90 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (295)
.|+++|+||||+|+|++|+.+|++|+||||++.+ +.|++.++.|||+|+.++++++++...+ ++++++.+ .+|+.
T Consensus 154 ~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~---~~K~~~ir~~GAeVv~~~~~~~~a~~~A-~~la~~~~-~~~~~ 228 (431)
T TIGR02035 154 SIAVGSTGNLGLSIGIISAALGFQVTVHMSADAK---QWKKDKLRSKGVTVVEYESDYGVAVEEG-RKNADADP-MCYFV 228 (431)
T ss_pred eEEEECccHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEECCCHHHHHHHH-HHHHHhcC-CeEEC
Confidence 4555799999999999999999999999999754 4688999999999999999999888776 45666533 33443
Q ss_pred CcccCCCCCchhhhhhhhhhhHHHHHHHHHH---hC-CCCCEEEEecCCchhHHHhhhhhhc--CCCceEEEeecCCCCC
Q 022573 91 GTVVGPHPCPIMVREFQSIIGKETRKQAMEK---WG-GKPDVLLACVGSGSNALGLFHEFIN--DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 91 ~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q---~~-~~~d~vvv~vG~Gg~~~G~~~~~~~--~~~~~vi~ve~~~~~~ 164 (295)
++. |+ ..++.||+|++.|+.+|+..+ .+ ..||+|++|+|+||+++|++.+||. .|++|||+|||.+++
T Consensus 229 d~~---n~--~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~- 302 (431)
T TIGR02035 229 DDE---NS--RNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSP- 302 (431)
T ss_pred CCC---Cc--ccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCH-
Confidence 332 22 124689999998887766321 11 2588999999999999999999985 788999999999985
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 244 (295)
++..++..|...... ..+.-....|+++||+++.++.....+.+.++|+++.|+|+|+.+++++|+++
T Consensus 303 ---~~~~s~~~g~~~~~~---------~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~ 370 (431)
T TIGR02035 303 ---CMLLGVYTGLHEKIS---------VQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAES 370 (431)
T ss_pred ---HHHHHHhcCCCcccc---------ccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 345556555432110 00000124789999998766654444445578999999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhcCCC-------------CCCCeEEEEecCCCcCChHHHHHhH
Q 022573 245 EGIFPALEASHALAFLEKLCPTL-------------PNGAKVVVNCSGGGDKDVDTVVNYR 292 (295)
Q Consensus 245 ~gi~~~~ssa~a~aa~~~~~~~~-------------~~~~~vv~v~tg~g~~~~~~~~~~~ 292 (295)
+|+++|||+|++++++.++.+.. ..+.+.++|.|||+...-+.+.+++
T Consensus 371 egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~p~~~~~~~~ 431 (431)
T TIGR02035 371 EGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGMVPEEEMEAYL 431 (431)
T ss_pred cCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCCCCHHHHHhhC
Confidence 99999999999999998876541 1477999999999999888877653
No 42
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=3.2e-39 Score=289.34 Aligned_cols=243 Identities=25% Similarity=0.233 Sum_probs=187.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCc
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKS 86 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (295)
+.+. |+++|+||||+|+|++|+++|++|+||||+..+ +.|+++++.+||+|+.+++++++++..+ ++++++ .+
T Consensus 67 ~~~~-vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~a-~~~~~~--~g 139 (310)
T PRK08246 67 PAAG-VVAASGGNAGLAVAYAAAALGVPATVFVPETAP---PAKVARLRALGAEVVVVGAEYADALEAA-QAFAAE--TG 139 (310)
T ss_pred cCCe-EEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCc---HHHHHHHHHCCCEEEEeCCCHHHHHHHH-HHHHHh--cC
Confidence 3344 455789999999999999999999999998744 3578899999999999999888777655 445554 34
Q ss_pred eeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeecCCCCCCc
Q 022573 87 YYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDS 166 (295)
Q Consensus 87 ~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~~~~~~ 166 (295)
+|..+++. ||+ .+.|+++++.|+.+ |++ .||+||+|+|+||+++|++.+|+. .+|||+|||.+++
T Consensus 140 ~~~~~~~~--n~~---~i~g~~t~~~Ei~e----q~~-~~D~iv~~vG~GG~~~Gi~~~~~~--~~~vi~ve~~~~~--- 204 (310)
T PRK08246 140 ALLCHAYD--QPE---VLAGAGTLGLEIEE----QAP-GVDTVLVAVGGGGLIAGIAAWFEG--RARVVAVEPEGAP--- 204 (310)
T ss_pred CEeCCCCC--Chh---hhcchHHHHHHHHH----hcC-CCCEEEEecCccHHHHHHHHHhcC--CCEEEEEeeCCCh---
Confidence 55556654 333 45788877766654 443 699999999999999999999854 4899999999985
Q ss_pred cchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhC
Q 022573 167 GKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEG 246 (295)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~g 246 (295)
.+..+++.|+.... ....+.+++++++.++.....+...+.|+++.|+|+|+++++++|++++|
T Consensus 205 -~~~~s~~~g~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~eg 268 (310)
T PRK08246 205 -TLHAALAAGEPVDV---------------PVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEELR 268 (310)
T ss_pred -HHHHHHHcCCcccC---------------CCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcC
Confidence 44566766765321 11233456666665554434455667899999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHH
Q 022573 247 IFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 288 (295)
Q Consensus 247 i~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~ 288 (295)
++++|++|++++++++...++.++++||+++|| ++.+++.+
T Consensus 269 i~~e~s~aa~lAa~~~~~~~~~~~~~vv~i~~g-~n~d~~~~ 309 (310)
T PRK08246 269 LAVEPGAATALAALLSGAYVPAPGERVAVVLCG-ANTDPATL 309 (310)
T ss_pred ceeehHHHHHHHHHHhCCccccCCCeEEEEECC-CCCChhhc
Confidence 999999999999998765444578899999998 68877654
No 43
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.6e-39 Score=294.26 Aligned_cols=248 Identities=25% Similarity=0.365 Sum_probs=187.8
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
|+++|.+++|+ +|+||||+|+|++|+.+|++|+||||++... +.|+++++.|||+|+.++++++++.+.+ ++++++
T Consensus 70 a~~~g~~~vV~-aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~--~~k~~~~~a~GA~V~~~~~~~~~~~~~a-~~~~~~ 145 (351)
T PRK06352 70 AKEEGAEAVIC-ASTGNTSAAAAAYATRAGLKAYIVIPEGKVA--LGKLAQAVMYGADIISIQGNFDEALKSV-RELAET 145 (351)
T ss_pred HHHCCCCEEEE-ECCcHHHHHHHHHHHHcCCcEEEEEeCCCCc--HHHHHHHHhcCCEEEEECCCHHHHHHHH-HHHHHh
Confidence 56778776655 6899999999999999999999999996311 4678899999999999999888877555 456654
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCC-----ceEEE
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DED-----VRLIG 156 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~-----~~vi~ 156 (295)
+++|..+.+ ||+ .++||.+++.|+. +|++..||+||+|+|+||+++|++++|++ .+. ++||+
T Consensus 146 --~~~~~~~~~---n~~---~~~G~~t~~~EI~----~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~ 213 (351)
T PRK06352 146 --EAVTLVNSV---NPY---RLEGQKTAAFEIC----EQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHG 213 (351)
T ss_pred --cCcccccCC---Ccc---ceeeHHHHHHHHH----HHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 344443322 444 3568877776665 56666799999999999999999999985 444 89999
Q ss_pred eecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhH---HHhhcCCceEEEeCHHH
Q 022573 157 VEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEIS---FLRDTGRAEFYTATDQE 233 (295)
Q Consensus 157 ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~---~~~~~~~~~~~~V~d~e 233 (295)
|||.+++ .+..|+.. ..++++++++.++... .+. .+.+...+.++.|+|+|
T Consensus 214 Vep~g~~--------~~~~g~~~-----------------~~~~~ia~~l~~~~~~-~~~~~~~~~d~~~g~~~~V~d~e 267 (351)
T PRK06352 214 FEAEGAA--------AIVQGKPI-----------------DNPETIATAIRIGNPA-SWGLAEAARDESGGYIHSVTDDE 267 (351)
T ss_pred EeeCCCC--------HHHhCCCc-----------------CCCCcceeEEEeCCCC-cHHHHHHHHHHhCCEEEEECHHH
Confidence 9999974 23334321 1245677766543211 111 11222344689999999
Q ss_pred HHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--CCCCCCeEEEEecCCCcCChHHHHHhH
Q 022573 234 AVQAYQRLCRLEGIFPALEASHALAFLEKLCP--TLPNGAKVVVNCSGGGDKDVDTVVNYR 292 (295)
Q Consensus 234 ~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~--~~~~~~~vv~v~tg~g~~~~~~~~~~~ 292 (295)
+++++++|++++|++++|++|+++++++++.+ ++.++++||+++||+|++|++++.++.
T Consensus 268 ~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~~~~~ 328 (351)
T PRK06352 268 IVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTAMSVH 328 (351)
T ss_pred HHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHHHhhc
Confidence 99999999999999999999999999999876 356788999999999999999986543
No 44
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-39 Score=289.12 Aligned_cols=246 Identities=21% Similarity=0.220 Sum_probs=189.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCcee
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYY 88 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (295)
.++|+ +|+||||+|+|++|+++|++|+||||++.+ +.|+++++.+||+|+.++++++++...+ ++++++ .+.+|
T Consensus 69 ~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~a-~~~~~~-~~~~~ 142 (317)
T PRK06815 69 QGVIT-ASSGNHGQGVALAAKLAGIPVTVYAPEQAS---AIKLDAIRALGAEVRLYGGDALNAELAA-RRAAEQ-QGKVY 142 (317)
T ss_pred ceEEE-ECCChHHHHHHHHHHHhCCCEEEEECCCCC---HHHHHHHHHCCCEEEEECCCHHHHHHHH-HHHHHh-cCCEE
Confidence 44554 789999999999999999999999999754 3688999999999999999887776555 455555 24455
Q ss_pred eeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCCcc
Q 022573 89 LTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDSG 167 (295)
Q Consensus 89 ~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~~~ 167 (295)
+ +++. +| +.++|+++++.|+. +|++ .||+||+|+|+||+++|++.+|++ .|+++||+|||.+++
T Consensus 143 ~-~~~~--~~---~~~~g~~t~a~Ei~----~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~---- 207 (317)
T PRK06815 143 I-SPYN--DP---QVIAGQGTIGMELV----EQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSP---- 207 (317)
T ss_pred e-cCCC--Ch---hhhcchhHHHHHHH----HhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCC----
Confidence 4 4443 22 24578877666655 5554 599999999999999999999985 789999999999985
Q ss_pred chhhhhccCceeeeecccccccccccccccccccccccCCCC-CCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhC
Q 022573 168 KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYP-GVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEG 246 (295)
Q Consensus 168 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~-~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~g 246 (295)
.+..++..|.... ....+++++|+... .++.....+..+++|+++.|+|+|+++++++|++++|
T Consensus 208 ~~~~~~~~g~~~~---------------~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~g 272 (317)
T PRK06815 208 SLYTSLEAGEIVE---------------VAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDR 272 (317)
T ss_pred cHHHHHHCCCccc---------------CCCCCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcC
Confidence 3455665555331 11245677776422 1221112355678899999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhH
Q 022573 247 IFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR 292 (295)
Q Consensus 247 i~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~ 292 (295)
++++|++|+++++++++.+++ ++++||+++|| ++.+.+.+.+.+
T Consensus 273 i~vepssg~alaa~~~~~~~~-~~~~vv~i~tG-~~~~~~~~~~~~ 316 (317)
T PRK06815 273 WLIEGAAGVALAAALKLAPRY-QGKKVAVVLCG-KNIVLEKYLEAV 316 (317)
T ss_pred CeEecHHHHHHHHHHhCchhc-CCCcEEEEECC-CCCCHHHHHHHh
Confidence 999999999999999988764 67899999998 566788776643
No 45
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=7.1e-39 Score=287.77 Aligned_cols=249 Identities=21% Similarity=0.189 Sum_probs=190.3
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCC
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEK 85 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~ 85 (295)
.+.+++| ++|+||||+|+|++|+++|++|+||||+..+ +.|+++++.|||+|+.++.+++++...+ ++++++ .
T Consensus 65 ~~~~~vv-~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~a-~~~~~~--~ 137 (317)
T TIGR02991 65 QRAAGVV-AASTGNHGRALAYAAAEEGVRATICMSELVP---QNKVDEIRRLGAEVRIVGRSQDDAQEEV-ERLVAD--R 137 (317)
T ss_pred ccCCeEE-EECCCHHHHHHHHHHHHhCCCEEEEcCCCCC---HHHHHHHHHcCCEEEEeCCCHHHHHHHH-HHHHHh--c
Confidence 3445555 5789999999999999999999999999754 3688899999999999999888876555 455554 2
Q ss_pred ceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCC
Q 022573 86 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~ 164 (295)
++|..+++. || +.++||++++.|+. +|+. .+|+||+|+|+||+++|++++||+ .|.+|||+|||++++
T Consensus 138 g~~~~~~~~--n~---~~~~g~~t~a~Ei~----~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~- 206 (317)
T TIGR02991 138 GLTMLPPFD--HP---DIVAGQGTLGLEVV----EQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGA- 206 (317)
T ss_pred CCEeeCCCC--Ch---HHHhhHHHHHHHHH----HhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCch-
Confidence 444444443 22 34688887666655 5554 589999999999999999999985 899999999999874
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCC-CCCCchh-HHHhhcCCceEEEeCHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEY-PGVGPEI-SFLRDTGRAEFYTATDQEAVQAYQRLC 242 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~-~~~~~~~-~~~~~~~~~~~~~V~d~e~~~a~~~l~ 242 (295)
.+..++..|.... ...++++++|+.. .+..... ..+..+++|+++.|+|+|+++++++|+
T Consensus 207 ---~~~~s~~~g~~~~---------------~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~ 268 (317)
T TIGR02991 207 ---AMKASLQAGRPVL---------------VAELPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAY 268 (317)
T ss_pred ---HHHHHHHcCCccc---------------CCCCCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHH
Confidence 3455555554431 1235678887742 1122222 335567889999999999999999999
Q ss_pred HHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 243 RLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 243 ~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
+++|++++|++|+++|++++.. +..+++||+++|| ++.+.+.+.+.+.
T Consensus 269 ~~~g~~ve~s~a~~~Aal~~~~--~~~~~~vvvvltG-~n~~~~~~~~~~~ 316 (317)
T TIGR02991 269 AEEREIVEGAGAVGIAALLAGK--IKNPGPCAVIVSG-RNIDMDLHKRIID 316 (317)
T ss_pred HhCCcEEcchHHHHHHHHHcCc--cccCCcEEEEeCC-CCCCHHHHHHHHc
Confidence 9999999999999999998532 3357899999998 6889998877653
No 46
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=4.3e-39 Score=287.65 Aligned_cols=234 Identities=22% Similarity=0.301 Sum_probs=179.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc--hhHHHHHHHHHHHhccCCce
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVGNLEKSY 87 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~--~~~~~~~~~~~~~~~~~~~~ 87 (295)
..|+++|+||||+|+|++|+++|++|+||||++.+ +.|+++++.+||+|+.++++ ++++++.+ ++++++. ++|
T Consensus 59 ~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a-~~~~~~~-~~~ 133 (299)
T TIGR01136 59 DTIIEATSGNTGIALAMVAAAKGYKLILTMPETMS---LERRKLLRAYGAELILTPAEEGMKGAIDKA-EELAAET-NKY 133 (299)
T ss_pred CEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCChHHHHHHH-HHHHhhC-CCe
Confidence 34566899999999999999999999999999754 36888999999999999986 46676655 4566653 467
Q ss_pred eeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCCc
Q 022573 88 YLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDS 166 (295)
Q Consensus 88 ~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~~ 166 (295)
|+.+++.|+.. ++.|+++++.|+ .+|++..||+||+|+|+||+++|++.+|++ .|.+|||+|||.++++
T Consensus 134 ~~~~~~~~~~~----~~~g~~t~~~Ei----~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~-- 203 (299)
T TIGR01136 134 VMLDQFENPAN----PEAHYKTTGPEI----WRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPV-- 203 (299)
T ss_pred EecCCCCCchh----HHHHHHHHHHHH----HHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCcc--
Confidence 77777653321 235666666555 566655699999999999999999999985 8899999999999852
Q ss_pred cchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhC
Q 022573 167 GKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEG 246 (295)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~g 246 (295)
+...... .+.+ .++....+. ..+...++|.++.|+|+|+++++++|++++|
T Consensus 204 ------~~~~~~~-------------------~~~~-~~i~~~~~~---~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~g 254 (299)
T TIGR01136 204 ------LSGGEPG-------------------PHKI-QGIGAGFIP---KILDLSLIDEVITVSDEDAIETARRLAREEG 254 (299)
T ss_pred ------ccCCCCC-------------------CccC-CCCCCCCCC---ccCChhhCCEEEEECHHHHHHHHHHHHHHhC
Confidence 2111111 1111 112111111 1234456789999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHhcCCC-CCCCeEEEEecCCCcCChHH
Q 022573 247 IFPALEASHALAFLEKLCPTL-PNGAKVVVNCSGGGDKDVDT 287 (295)
Q Consensus 247 i~~~~ssa~a~aa~~~~~~~~-~~~~~vv~v~tg~g~~~~~~ 287 (295)
++++|++|+++++++++.++. .++++||+++||+|.+|+++
T Consensus 255 i~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~ 296 (299)
T TIGR01136 255 ILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLST 296 (299)
T ss_pred ceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCc
Confidence 999999999999999987653 35889999999999999985
No 47
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=7.4e-39 Score=296.16 Aligned_cols=254 Identities=24% Similarity=0.312 Sum_probs=196.9
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC-CcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHH
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWV 80 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~ 80 (295)
.|++.|.+.+|+ +|+||||+|+|++|+++|++|+||+|++ .+ ..|+++++.+||+|+.++++++++.+.+ ++++
T Consensus 109 ~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~---~~k~~~~~~~GA~vi~v~~~~~~~~~~a-~~~~ 183 (397)
T PRK06260 109 KALELGVKTVAC-ASTGNTSASLAAYAARAGLKCYVLLPAGKVA---LGKLAQALLHGAKVLEVDGNFDDALDMV-VELA 183 (397)
T ss_pred HHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEEeCCCcc---HHHHHHHHhcCCEEEEECCcHHHHHHHH-HHHH
Confidence 356778877666 6899999999999999999999999986 33 4678899999999999999998887555 4566
Q ss_pred hccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCC-CCCEEEEecCCchhHHHhhhhhhc-------CCCc
Q 022573 81 GNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG-KPDVLLACVGSGSNALGLFHEFIN-------DEDV 152 (295)
Q Consensus 81 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~-~~d~vvv~vG~Gg~~~G~~~~~~~-------~~~~ 152 (295)
++ .++|..+++ ||+. ++||+|+++|+. +|++. .||+||+|+|+||+++|++.+|++ .+.+
T Consensus 184 ~~--~g~y~~~~~---np~~---~~G~~t~a~Ei~----eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~p 251 (397)
T PRK06260 184 KE--GKIYLLNSI---NPFR---LEGQKTIGFEIA----DQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLP 251 (397)
T ss_pred hh--CCEEeecCC---Cchh---hcchhhHHHHHH----HHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCC
Confidence 55 356766664 5654 578888887776 45544 699999999999999999999974 2458
Q ss_pred eEEEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCC--CCchhHHHhhcCCceEEEeC
Q 022573 153 RLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPG--VGPEISFLRDTGRAEFYTAT 230 (295)
Q Consensus 153 ~vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~--~~~~~~~~~~~~~~~~~~V~ 230 (295)
|+|+||+.++++ +..++..|..... ....+.++++++.+.. ..+....+.+...+.++.|+
T Consensus 252 rii~Vq~~g~~~----~~~a~~~g~~~~~-------------~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~ 314 (397)
T PRK06260 252 KMTGIQAEGAAP----IVEAIKKGKDEIE-------------PVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVS 314 (397)
T ss_pred eEEEEecCCCcH----HHHHHHcCCCccc-------------ccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEEC
Confidence 999999999862 3445555543210 1223577888776422 22222223344457899999
Q ss_pred HHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCChHHHH
Q 022573 231 DQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVDTVV 289 (295)
Q Consensus 231 d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~~~~~~ 289 (295)
|+|+++++++|++++|++++|++|+++++++++.++ +.++++||+++||+|.|+.+.+.
T Consensus 315 d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~~~ 375 (397)
T PRK06260 315 DEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDAAI 375 (397)
T ss_pred HHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHHHH
Confidence 999999999999999999999999999999998764 66889999999999999998875
No 48
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.2e-38 Score=290.68 Aligned_cols=250 Identities=25% Similarity=0.352 Sum_probs=190.3
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+++.+.+++|+ +|+||||+++|++|+++|++|+||||++... ..|+++++.+||+|+.++++++++.+.+ +++.++
T Consensus 73 a~~~g~~~iv~-aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~--~~k~~~~~~~GA~Vi~~~~~~~~~~~~a-~~l~~~ 148 (353)
T PRK07409 73 AKEEGAKAVIC-ASTGNTSASAAAYAARAGLKAFVLIPEGKIA--LGKLAQAVMYGAEIIQIDGNFDDALEIV-RELAEK 148 (353)
T ss_pred HHHCCCCEEEE-ECCcHHHHHHHHHHHHcCCCEEEEEcCCCCc--hhhHHHHHhcCCEEEEECCCHHHHHHHH-HHHHHh
Confidence 55677776665 6899999999999999999999999996321 3578899999999999999888877555 556655
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-------CCCceEE
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRLI 155 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-------~~~~~vi 155 (295)
. ++|..+++ ||+ .++||.+++.|+. +|++..||+||+|+|+||+++|++.+|+. .+.+|||
T Consensus 149 ~--~~~~~~~~---n~~---~~~g~~t~~~EI~----~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvi 216 (353)
T PRK07409 149 Y--PVTLVNSV---NPY---RIEGQKTAAFEIV----DALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMM 216 (353)
T ss_pred c--CceecCCC---Cch---hhhhHHHHHHHHH----HHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEE
Confidence 2 35544432 443 3578877666665 55555799999999999999999999974 2358999
Q ss_pred EeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhH--HHhhcCCceEEEeCHHH
Q 022573 156 GVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEIS--FLRDTGRAEFYTATDQE 233 (295)
Q Consensus 156 ~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~--~~~~~~~~~~~~V~d~e 233 (295)
+|||.+++ ++..|... ..+.++++|+.++....... .+.+.+.++++.|+|+|
T Consensus 217 gVep~g~~--------~~~~g~~~-----------------~~~~ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e 271 (353)
T PRK07409 217 GFQAAGAA--------PIVRGEPV-----------------KNPETIATAIRIGNPASWDKAVAARDESGGLIDAVTDEE 271 (353)
T ss_pred EEecCCCC--------hHhhCCcC-----------------CCCcceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHH
Confidence 99999874 23333321 12456777776432222111 22344567899999999
Q ss_pred HHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 234 AVQAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 234 ~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
++++++++++++|++++|++|+++++++++.++ +.++++||+++||+|++|++++.+...
T Consensus 272 ~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~~~~~~ 333 (353)
T PRK07409 272 ILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTAIKQAD 333 (353)
T ss_pred HHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHHHhhcc
Confidence 999999999999999999999999999988765 667899999999999999999876544
No 49
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=289.85 Aligned_cols=248 Identities=24% Similarity=0.360 Sum_probs=188.8
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
.|++.|.+++|+ +|+||||+|+|++|+++|++|+||||++... +.|+++++.+||+|+.++++++++...+ +++++
T Consensus 69 ~a~~~g~~~vV~-aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~--~~k~~~~~~~GA~V~~~~~~~~~~~~~a-~~~~~ 144 (352)
T PRK06721 69 KAKEEGSEAIIC-ASTGNTSASAAAYAARLGMKCIIVIPEGKIA--HGKLAQAVAYGAEIISIEGNFDDALKAV-RNIAA 144 (352)
T ss_pred HHHHCCCCEEEE-ECCcHHHHHHHHHHHHCCCcEEEEECCCCCC--HHHHHHHHHcCCEEEEECCCHHHHHHHH-HHHHH
Confidence 356778777666 6899999999999999999999999986321 3678899999999999999888876555 45665
Q ss_pred ccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhh----hhc--CCCceEE
Q 022573 82 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHE----FIN--DEDVRLI 155 (295)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~----~~~--~~~~~vi 155 (295)
+ .++|+.+. . ||+ .++||.+++.|+. +|++..||+||+|+|+||+++|++.+ +|. .|.++||
T Consensus 145 ~--~~~~~~~~-~--n~~---~~~G~~t~~~Ei~----eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vi 212 (352)
T PRK06721 145 E--EPITLVNS-V--NPY---RIEGQKTAAFEIC----DQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIH 212 (352)
T ss_pred h--CCceeccC-C--Cch---hhhhhhhHHHHHH----HHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 5 23444332 2 443 3568877776665 55555699999999999999986544 442 3889999
Q ss_pred EeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchh--HHHhhcCCceEEEeCHHH
Q 022573 156 GVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEI--SFLRDTGRAEFYTATDQE 233 (295)
Q Consensus 156 ~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~--~~~~~~~~~~~~~V~d~e 233 (295)
+|||++++ .+..+.. +..++++++++.++...... ......++|+++.|+|+|
T Consensus 213 gVep~~~~--------~~~~g~~-----------------~~~~~tia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e 267 (352)
T PRK06721 213 GFEAEGAA--------AIVKGHV-----------------IDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEE 267 (352)
T ss_pred EEecCCCC--------hHhhCCc-----------------CCCCCceeeccccCCCCCHHHHHHHHHhcCCEEEEECHHH
Confidence 99999974 2333322 12356788877644322111 122345788999999999
Q ss_pred HHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--CCCCCCeEEEEecCCCcCChHHHHH
Q 022573 234 AVQAYQRLCRLEGIFPALEASHALAFLEKLCP--TLPNGAKVVVNCSGGGDKDVDTVVN 290 (295)
Q Consensus 234 ~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~--~~~~~~~vv~v~tg~g~~~~~~~~~ 290 (295)
+++++++|++++|++++|++|+++++++++.+ ++.++++||+++||+|.+|++.+.+
T Consensus 268 ~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~ 326 (352)
T PRK06721 268 ILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAIS 326 (352)
T ss_pred HHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhh
Confidence 99999999999999999999999999999876 3667899999999999999999863
No 50
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=4.9e-39 Score=286.19 Aligned_cols=225 Identities=17% Similarity=0.200 Sum_probs=173.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--chhHHHHHHHHHHHhccCCce
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVGNLEKSY 87 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~~~~~~~~~~~~~~~~~~~~~ 87 (295)
..|+++|+||||+|+|++|+.+|++|+||||++.+ +.|+++++.+||+|+.++. +++++.+.+ ++++++ .++
T Consensus 64 ~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a-~~l~~~--~~~ 137 (296)
T PRK11761 64 DTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMS---QERRAAMRAYGAELILVPKEQGMEGARDLA-LQMQAE--GEG 137 (296)
T ss_pred CEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCChHHHHHHH-HHHHhc--cCC
Confidence 34556799999999999999999999999999754 3688999999999999997 566665444 455555 344
Q ss_pred eeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCCc
Q 022573 88 YLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDS 166 (295)
Q Consensus 88 ~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~~ 166 (295)
|..+||.|+.+ +..|+.+++.|+ ++|++..+|+||+|+|+||+++|++++||+ .|.+|||+|||.+++.
T Consensus 138 ~~~~~~~n~~~----~~~~~~t~~~Ei----~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~-- 207 (296)
T PRK11761 138 KVLDQFANPDN----PLAHYETTGPEI----WRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSS-- 207 (296)
T ss_pred EecCCCCChhh----HHHHhhchHHHH----HHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCc--
Confidence 55566653321 233556666555 566655689999999999999999999985 8899999999998641
Q ss_pred cchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhC
Q 022573 167 GKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEG 246 (295)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~g 246 (295)
+ .|... . +.. .. ...++..++|+++.|+|+|+.+++++|++++|
T Consensus 208 ------i-~g~~~----------------~--~~~---------~~--~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g 251 (296)
T PRK11761 208 ------I-PGIRR----------------W--PEE---------YL--PKIFDASRVDRVLDVSQQEAENTMRRLAREEG 251 (296)
T ss_pred ------C-cCCCC----------------C--CCC---------cC--CcccChhhCCEEEEECHHHHHHHHHHHHHHhC
Confidence 1 11000 0 000 00 01233456789999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHH
Q 022573 247 IFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 287 (295)
Q Consensus 247 i~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~ 287 (295)
+++||++|+++++++++.++. ++++||+|+||+|.+|+++
T Consensus 252 i~ve~ssga~laaa~~~~~~~-~~~~vV~v~~d~g~ky~~~ 291 (296)
T PRK11761 252 IFCGVSSGGAVAAALRIAREN-PNAVIVAIICDRGDRYLST 291 (296)
T ss_pred ceEchhHHHHHHHHHHHHHHC-CCCeEEEEECCCCcccCCh
Confidence 999999999999999987763 6789999999999999997
No 51
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-39 Score=276.94 Aligned_cols=294 Identities=55% Similarity=0.960 Sum_probs=265.6
Q ss_pred CcccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc---hhHHHHHHHH
Q 022573 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC---FKEASSEAIR 77 (295)
Q Consensus 1 ~~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~---~~~~~~~~~~ 77 (295)
|+|++.|++.+|++.++|+||.|+|.+|+++|++|+|+|-..+-.++.-|+-+|+.+||+|+-+.+. ..++..++.+
T Consensus 164 llakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r 243 (477)
T KOG1395|consen 164 LLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGR 243 (477)
T ss_pred HHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhh
Confidence 5789999999999988899999999999999999999998876667778999999999999988873 3444445555
Q ss_pred HHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEe
Q 022573 78 NWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGV 157 (295)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~v 157 (295)
.+..+...-+|+..+..++|||+.++..+|++++.|+..|..+..+..||.||.++|+|++.+|++.-|.....++.|+|
T Consensus 244 ~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~dk~v~~igv 323 (477)
T KOG1395|consen 244 LWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRDKSVGMIGV 323 (477)
T ss_pred hhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhccchhheeee
Confidence 56665556788888889999999999999999999999888888888999999999999999999999988888999999
Q ss_pred ecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHH
Q 022573 158 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237 (295)
Q Consensus 158 e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a 237 (295)
+..+-...+..+...+..|..+.+.|...|++++..+++..+|+|..||++|++++.+..+......+++.|+|.|.+++
T Consensus 324 eaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~ecleg 403 (477)
T KOG1395|consen 324 EAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEG 403 (477)
T ss_pred eecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHH
Confidence 98887766667788899999999999999999999999999999999999999999988888888889999999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 238 ~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
.+.|.+.|||...+.+..++++...+++++++++.+|+-.+|+|++|+..+.+++..
T Consensus 404 fk~~srlEGIIPAlEssHAva~~~~lck~l~~~k~ivi~~sGrGdkDvqS~~kyL~~ 460 (477)
T KOG1395|consen 404 FKQLSRLEGIIPALESSHAVAGEAELCKTLPEDKVIVINISGRGDKDVQSVAKYLPG 460 (477)
T ss_pred HHHHHHhcccccCCchhhHHHHHHHhccccCCCcEEEEEecCCCCchHHHHHHhccc
Confidence 999999999998899999999999999999999999999999999999999998753
No 52
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=9.5e-39 Score=295.97 Aligned_cols=247 Identities=21% Similarity=0.215 Sum_probs=192.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCc
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKS 86 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (295)
+.+++| ++|+||||+|+|++|+++|++|+||||++.+ +.|+++++.+||+|+.+++++++++..+ ++++++ . +
T Consensus 70 ~~~~vv-~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~a-~~l~~~-~-~ 142 (403)
T PRK07334 70 RARGVI-AMSAGNHAQGVAYHAQRLGIPATIVMPRFTP---TVKVERTRGFGAEVVLHGETLDEARAHA-RELAEE-E-G 142 (403)
T ss_pred hCCcEE-EECCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEECcCHHHHHHHH-HHHHHh-c-C
Confidence 344455 4789999999999999999999999999754 3688899999999999998888887655 556665 2 3
Q ss_pred eeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCC
Q 022573 87 YYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLD 165 (295)
Q Consensus 87 ~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~ 165 (295)
+|..+++. || ..++|+.+++.|+ ++|++ .||+||+|+|+|||++|++++|+. .|.+|||+|||++++
T Consensus 143 ~~~~~~~~--~~---~~~~g~~t~~~Ei----~~q~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~-- 210 (403)
T PRK07334 143 LTFVHPYD--DP---AVIAGQGTVALEM----LEDAP-DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYP-- 210 (403)
T ss_pred CEecCCCC--CH---HHHHhHHHHHHHH----HhcCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCc--
Confidence 44445543 22 2457887766555 46664 699999999999999999999975 899999999999985
Q ss_pred ccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHh
Q 022573 166 SGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLE 245 (295)
Q Consensus 166 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~ 245 (295)
.+..++..+.. .....++++|++++.++.....+...++|+++.|+|+|++++++.|++++
T Consensus 211 --~~~~~~~~~~~-----------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~ 271 (403)
T PRK07334 211 --SMYAAIKGVAL-----------------PCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEIE 271 (403)
T ss_pred --hHHHHHhCCCc-----------------cCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhc
Confidence 23334432211 11346788888765444322345667889999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 246 GIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 246 gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
|++++|++|+++++++++.++ .++++||+++|| |+.+.+.+.+.+.
T Consensus 272 gi~v~~s~a~~~aa~~~~~~~-~~~~~vv~i~~g-gn~d~~~l~~il~ 317 (403)
T PRK07334 272 KTVVEGAGAAGLAALLAYPER-FRGRKVGLVLSG-GNIDTRLLANVLL 317 (403)
T ss_pred CCEEechHHHHHHHHHhCchh-cCCCeEEEEECC-CCCCHHHHHHHHH
Confidence 999999999999999987665 367899999998 6899998887654
No 53
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=7.3e-39 Score=291.09 Aligned_cols=239 Identities=24% Similarity=0.316 Sum_probs=186.3
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
.|++.|.+++|+ +|+||||+|+|++|+++|++|+||||++.+ +.|+++++.+||+|+.++++++++...+ +++++
T Consensus 98 ~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~v~vp~~~~---~~k~~~~~~~GA~v~~v~~~~~~~~~~a-~~l~~ 172 (347)
T PRK08329 98 KLKEEGINEVVI-DSSGNAALSLALYSLSEGIKVHVFVSYNAS---KEKISLLSRLGAELHFVEGDRMEVHEEA-VKFSK 172 (347)
T ss_pred HHHHcCCCEEEE-ECCCcHHHHHHHHHHHcCCcEEEEECCCCh---HHHHHHHHHcCCEEEEECCCHHHHHHHH-HHHHH
Confidence 366778877776 689999999999999999999999999754 4689999999999999999877765444 45565
Q ss_pred ccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-------CCCceE
Q 022573 82 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRL 154 (295)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-------~~~~~v 154 (295)
+ .+.+|+ +++. ||+. ++|++|+++|+. +|++ .||+||+|+|+||+++|++++|++ .+.+|+
T Consensus 173 ~-~~~~~~-~~~~--np~~---~eG~~t~~~Ei~----eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~i 240 (347)
T PRK08329 173 R-NNIPYV-SHWL--NPYF---LEGTKTIAYEIY----EQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKL 240 (347)
T ss_pred h-cCCeec-cCCC--Cchh---hccchhHHHHHH----HHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEE
Confidence 5 233554 3332 5553 678888877776 5555 699999999999999999999974 266899
Q ss_pred EEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCch--hHHHhhcCCceEEEeCHH
Q 022573 155 IGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPE--ISFLRDTGRAEFYTATDQ 232 (295)
Q Consensus 155 i~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~--~~~~~~~~~~~~~~V~d~ 232 (295)
|+|||.++++ +... ...+.++++|+.++.+... ...+.+.+.+.++.|+|+
T Consensus 241 i~Vq~~g~~~--------~~~~-------------------~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~ 293 (347)
T PRK08329 241 VAVQAEGYES--------LCKR-------------------SKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEE 293 (347)
T ss_pred EEEecCCCch--------HHhc-------------------cCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHH
Confidence 9999998742 1110 0125678888775544332 223344556789999999
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCCh
Q 022573 233 EAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDV 285 (295)
Q Consensus 233 e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~~ 285 (295)
|+++++++|++ +||+++|++|+++++++++.++ +.++++||+++||+|.|++
T Consensus 294 e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 294 ETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 99999999986 8999999999999999999874 6788999999999999874
No 54
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.3e-38 Score=285.50 Aligned_cols=242 Identities=26% Similarity=0.275 Sum_probs=186.3
Q ss_pred cccC-CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 4 KRMG-RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 4 ~~~~-~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++.+ .+.+| ++|+||||+|+|++|+++|++|++|+|++.+ +.|+++++.+||+|+.++++++++.+.+ ++++++
T Consensus 60 ~~~~~~~~iv-~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~---~~k~~~l~~~Ga~vi~~~~~~~~~~~~a-~~la~~ 134 (304)
T cd01562 60 SEEERAKGVV-AASAGNHAQGVAYAAKLLGIPATIVMPETAP---AAKVDATRAYGAEVVLYGEDFDEAEAKA-RELAEE 134 (304)
T ss_pred CHhhcCCcEE-EECCCHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCHHHHHHHH-HHHHHh
Confidence 3434 34444 5689999999999999999999999998653 3578899999999999999888887655 566665
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCC
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAG 161 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~ 161 (295)
. ++|..+++.|++ .++|+.+++ .||++|++. ||+||+|+|+|||++|++++|+. .+.+|||+|+|.+
T Consensus 135 -~-~~~~~~~~~n~~-----~~~g~~~~~----~Ei~~q~~~-~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~ 202 (304)
T cd01562 135 -E-GLTFIHPFDDPD-----VIAGQGTIG----LEILEQVPD-LDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEG 202 (304)
T ss_pred -c-CCEEeCCCCCcc-----hhccHHHHH----HHHHHhcCC-CCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 2 345556665332 246776555 455566654 99999999999999999999985 8899999999998
Q ss_pred CCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHH
Q 022573 162 FGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRL 241 (295)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l 241 (295)
++ .+..++..|.... .....++++|++++........+.+++.|+++.|+|+|+++++++|
T Consensus 203 ~~----~~~~~~~~g~~~~---------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l 263 (304)
T cd01562 203 AP----AMAQSLAAGKPVT---------------LPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLL 263 (304)
T ss_pred Cc----hHHHHHHcCCccc---------------CCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHH
Confidence 75 3344454554321 1124677777775433322234567788999999999999999999
Q ss_pred HHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcC
Q 022573 242 CRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDK 283 (295)
Q Consensus 242 ~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~ 283 (295)
++++|++++|++|+++++++++.++. ++++||+++||+ +.
T Consensus 264 ~~~eGi~~~pss~~a~a~~~~~~~~~-~~~~vv~i~tGG-~~ 303 (304)
T cd01562 264 FEREKLVAEPAGALALAALLSGKLDL-KGKKVVVVLSGG-NI 303 (304)
T ss_pred HHHcCceEchhHHHHHHHHHhCcccc-CCCeEEEEecCC-CC
Confidence 99999999999999999999998775 788999999985 53
No 55
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=3.2e-38 Score=291.36 Aligned_cols=276 Identities=34% Similarity=0.446 Sum_probs=200.3
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHH----------
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEA---------- 71 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~---------- 71 (295)
.+++.|.+++|+++|+||||+|+|++|+++|++|+||||..+...++.|+.+|+.+||+|+.++++++++
T Consensus 111 ~a~~~G~~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~ 190 (419)
T TIGR01415 111 YAKIEGAKRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPD 190 (419)
T ss_pred HHHHcCCCeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccc
Confidence 3577889999988788999999999999999999999998643333467889999999999999976654
Q ss_pred --------HHHHHHHHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhh
Q 022573 72 --------SSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLF 143 (295)
Q Consensus 72 --------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~ 143 (295)
+.++.+. +.+..+..|+.++.. |+ +..|+.+++.|+.+|+. ..+..||+||+|+|+||+++|++
T Consensus 191 ~~gsl~~ai~~a~e~-a~~~~~~~y~~~~~~--n~----~~~h~~~ig~Ei~~Ql~-~~g~~pD~vv~~vG~Gg~~~Gi~ 262 (419)
T TIGR01415 191 HPGSLGIAISEAIEY-ALSDEDTKYSLGSVL--NH----VLLHQTVIGLEAKKQME-EAGEDPDVIIGCVGGGSNFAGLA 262 (419)
T ss_pred cccchHHHHHHHHHH-HHhCCCCEEEeCCCC--cH----HHHHHHHHHHHHHHHHH-hcCCCCCEEEEEeCchHHHHHHH
Confidence 2334333 333234566666643 22 24577777777776652 23346999999999999999999
Q ss_pred hhhh---c--CCCceEEEeecCCCCCCccchhhhhccCceeeeec----ccccccccccc-cccccccccccCCCCCCCc
Q 022573 144 HEFI---N--DEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHG----AMSYLLQDEEG-QILGTHSVGVGLEYPGVGP 213 (295)
Q Consensus 144 ~~~~---~--~~~~~vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~-~~~~~~~i~~gl~~~~~~~ 213 (295)
.+|+ . .+++|||+|||.+++. +.++......+ ......+...+ ....+.++++||++++.++
T Consensus 263 ~~f~~~~l~g~~~~rviaVep~~~~~--------l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~ 334 (419)
T TIGR01415 263 FPFVADKLSGKIDRRFIAAEPKACPT--------LTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAP 334 (419)
T ss_pred HHHHHHHhcCCCCCEEEEEeeCCChh--------hhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccH
Confidence 8773 1 3589999999999852 22221100000 00000000111 1224567889999887776
Q ss_pred hhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCC---CCCeEEEEecCCCcCChHHHHH
Q 022573 214 EISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLP---NGAKVVVNCSGGGDKDVDTVVN 290 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~---~~~~vv~v~tg~g~~~~~~~~~ 290 (295)
.+..+.+..+++.+.|+|+|+.+++++|++++||+++|++|++++++++++++.. .+++||+++||+|++|++.+.+
T Consensus 335 ~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~~y~~ 414 (419)
T TIGR01415 335 TLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLKAYAK 414 (419)
T ss_pred HHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHHHHHH
Confidence 5556666666688999999999999999999999999999999999999876532 2347889999999999999998
Q ss_pred hHh
Q 022573 291 YRY 293 (295)
Q Consensus 291 ~~~ 293 (295)
++.
T Consensus 415 ~~~ 417 (419)
T TIGR01415 415 YLH 417 (419)
T ss_pred Hhc
Confidence 875
No 56
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=2.3e-38 Score=288.59 Aligned_cols=233 Identities=17% Similarity=0.243 Sum_probs=175.8
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc--hhHHHHHHHHHHHhccCCcee
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVGNLEKSYY 88 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 88 (295)
.|+++|+||||+|+|++|+++|++|+||||+..+ ..|+++|+.+||+|+.++.. +...++++ ++++++.+ .+|
T Consensus 113 ~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~---~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a-~~l~~~~~-~~~ 187 (368)
T PLN02556 113 TLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTS---LERRVTMRAFGAELVLTDPTKGMGGTVKKA-YELLESTP-DAF 187 (368)
T ss_pred EEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEECCCCCccHHHHHH-HHHHHhcC-CCC
Confidence 4555789999999999999999999999999643 46888999999999999853 23455555 34555433 455
Q ss_pred eeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCCcc
Q 022573 89 LTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDSG 167 (295)
Q Consensus 89 ~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~~~ 167 (295)
..+||. ||.. +..|+.+++ +||++|++..+|+||+|+|||||++|++++|++ .|++|||+|||.+++
T Consensus 188 ~~~q~~--np~~--~~~g~~ttg----~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~---- 255 (368)
T PLN02556 188 MLQQFS--NPAN--TQVHFETTG----PEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESN---- 255 (368)
T ss_pred ccCCCC--CHHH--HHHHHHHHH----HHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCc----
Confidence 557765 3321 123665555 555566655799999999999999999999985 899999999999974
Q ss_pred chhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhCC
Q 022573 168 KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGI 247 (295)
Q Consensus 168 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi 247 (295)
.+..|... ++.+ .|++.... + ..+...++|+++.|+|+|+++++++|++++|+
T Consensus 256 ----~~~~g~~~-------------------~~~i-~g~g~~~~-p--~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi 308 (368)
T PLN02556 256 ----VLNGGKPG-------------------PHHI-TGNGVGFK-P--DILDMDVMEKVLEVSSEDAVNMARELALKEGL 308 (368)
T ss_pred ----cccCCCCC-------------------Ceee-eeccCCCC-c--cccchhhCCeEEEECHHHHHHHHHHHHHHcCC
Confidence 23333321 2222 23332111 1 22445678899999999999999999999999
Q ss_pred CCCcchhhHHHHHHHhcCCC-CCCCeEEEEecCCCcCChHH
Q 022573 248 FPALEASHALAFLEKLCPTL-PNGAKVVVNCSGGGDKDVDT 287 (295)
Q Consensus 248 ~~~~ssa~a~aa~~~~~~~~-~~~~~vv~v~tg~g~~~~~~ 287 (295)
++++++|++++++++++++. .++++||++++|+|.+|+++
T Consensus 309 ~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~ 349 (368)
T PLN02556 309 MVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSS 349 (368)
T ss_pred EEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCCh
Confidence 99999999999999887653 35789999999999999987
No 57
>PLN00011 cysteine synthase
Probab=100.00 E-value=2.8e-38 Score=284.80 Aligned_cols=235 Identities=21% Similarity=0.272 Sum_probs=179.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchh--HHHHHHHHHHHhccCC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK--EASSEAIRNWVGNLEK 85 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~--~~~~~~~~~~~~~~~~ 85 (295)
++++| ++|+||||+|+|++|+.+|++|+||||++.+ +.|+++++.+||+|+.++.+++ +.++++ +++.++. .
T Consensus 69 ~~~vv-~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a-~~l~~~~-~ 142 (323)
T PLN00011 69 KSTLI-EATAGNTGIGLACIGAARGYKVILVMPSTMS---LERRIILRALGAEVHLTDQSIGLKGMLEKA-EEILSKT-P 142 (323)
T ss_pred CcEEE-EeCCChHHHHHHHHHHHcCCeEEEEeCCCCC---HHHHHHHHHcCCEEEEECCCcChHHHHHHH-HHHHHhC-C
Confidence 45555 5789999999999999999999999999754 3688999999999999997543 334444 4555542 3
Q ss_pred ceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCC
Q 022573 86 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~ 164 (295)
.+|+++|+.|+.+. ..|+.+++ .||++|+...||+||+|+|+|||++|++++|++ .|++|||+|||.+++.
T Consensus 143 ~~~~~~~~~n~~n~----~~~~~t~~----~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~ 214 (323)
T PLN00011 143 GGYIPQQFENPANP----EIHYRTTG----PEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAV 214 (323)
T ss_pred CeEEeccccCCccH----HHHHHHHH----HHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcc
Confidence 57778888654321 12454444 555667655799999999999999999999985 8999999999999742
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 244 (295)
+..++. ...+++|++.+..... +....+|+++.|+|+|+++++++|+++
T Consensus 215 --------~~~~~~--------------------~~~~~~gl~~~~~~~~---~~~~~~d~~v~V~d~e~~~a~~~l~~~ 263 (323)
T PLN00011 215 --------LSGGQP--------------------GPHLIQGIGSGIIPFN---LDLTIVDEIIQVTGEEAIETAKLLALK 263 (323)
T ss_pred --------cCCCCC--------------------CCCCCCCCCCCCCCcc---cChhhCCeEEEECHHHHHHHHHHHHHh
Confidence 222221 1234556654322211 234457889999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhcCCC-CCCCeEEEEecCCCcCChHH
Q 022573 245 EGIFPALEASHALAFLEKLCPTL-PNGAKVVVNCSGGGDKDVDT 287 (295)
Q Consensus 245 ~gi~~~~ssa~a~aa~~~~~~~~-~~~~~vv~v~tg~g~~~~~~ 287 (295)
+|++++|++|++++++++++++. .++++||++++|+|++|+|+
T Consensus 264 ~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~ 307 (323)
T PLN00011 264 EGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLST 307 (323)
T ss_pred cCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCCh
Confidence 99999999999999999987643 35789999999999999986
No 58
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=3.1e-38 Score=289.31 Aligned_cols=249 Identities=16% Similarity=0.110 Sum_probs=188.1
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeee
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLT 90 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (295)
.|+++|+||||+|+|++|+.+|++|+||||++.+ +.|++.|+.|||+|+.++++++++...+ ++++++.+ .+|+.
T Consensus 136 ~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~---~~K~~~ira~GAeVv~v~~~~~~a~~~a-~~la~~~~-~~~~v 210 (404)
T cd06447 136 SIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAK---QWKKDKLRSKGVTVVEYETDYSKAVEEG-RKQAAADP-MCYFV 210 (404)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCCCc---HHHHHHHHHCCCEEEEECCCHHHHHHHH-HHHHHHCC-CeEeC
Confidence 4556799999999999999999999999999754 4688999999999999999888887666 45666532 34444
Q ss_pred CcccCCCCCchhhhhhhhhhhHHHHHHHHH---HhC-CCCCEEEEecCCchhHHHhhhhhhc--CCCceEEEeecCCCCC
Q 022573 91 GTVVGPHPCPIMVREFQSIIGKETRKQAME---KWG-GKPDVLLACVGSGSNALGLFHEFIN--DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 91 ~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~---q~~-~~~d~vvv~vG~Gg~~~G~~~~~~~--~~~~~vi~ve~~~~~~ 164 (295)
++++ +| .+++|++|++.|+.+|+-. ..+ ..||+||+|+|+||+++|++++||+ .|+++||+|||.+++
T Consensus 211 ~~~n--~~---~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap- 284 (404)
T cd06447 211 DDEN--SR---DLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSP- 284 (404)
T ss_pred CCCC--ch---hHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCCh-
Confidence 4421 22 3578999999888776632 111 1367899999999999999999985 688999999999874
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 244 (295)
++..++..|...... . ...-..+.|+++||.++.++.....+.+..+|+++.|+|+|+.+++++|+++
T Consensus 285 ---~~~~s~~ag~~~~~~--------~-~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~ 352 (404)
T cd06447 285 ---CMLLGMATGLHDKIS--------V-QDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDS 352 (404)
T ss_pred ---HHHHHHHcCCCcccc--------c-cccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHH
Confidence 334455555432110 0 0000125789999987665554444445778999999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhcCCC-----------CCCCeEEEEecCCCc
Q 022573 245 EGIFPALEASHALAFLEKLCPTL-----------PNGAKVVVNCSGGGD 282 (295)
Q Consensus 245 ~gi~~~~ssa~a~aa~~~~~~~~-----------~~~~~vv~v~tg~g~ 282 (295)
+|+++|||+|+++++++++.++. -.+.+-++|.||+.+
T Consensus 353 ~gi~vepSgAa~lAAl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T cd06447 353 ENIEVEPSAAAGFTGPAQVLSEAEGKRYVRLGYRMENATHIVWATGGSM 401 (404)
T ss_pred cCcEEeHHHHHHHHHHHHHHHhhhHHHhcCccccccCceEEEEccCCCC
Confidence 99999999999999999987631 134678899998654
No 59
>PLN03013 cysteine synthase
Probab=100.00 E-value=5.3e-38 Score=287.76 Aligned_cols=235 Identities=20% Similarity=0.260 Sum_probs=180.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc--hhHHHHHHHHHHHhccCCce
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVGNLEKSY 87 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~--~~~~~~~~~~~~~~~~~~~~ 87 (295)
+.|+++|+||||+|+|++|+.+|++|+||||++.+ +.|+++|+.+||+|+.+++. ++++++.+ ++++++. .++
T Consensus 176 ~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s---~~K~~~ira~GAeVi~v~~~~~~~~a~~~A-~ela~~~-~g~ 250 (429)
T PLN03013 176 SVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMS---MERRVLLKAFGAELVLTDPAKGMTGAVQKA-EEILKNT-PDA 250 (429)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCc---HHHHHHHHHcCCEEEEECCCCChHHHHHHH-HHHHhhc-CCe
Confidence 45667899999999999999999999999999754 46888999999999999875 44566555 4566553 346
Q ss_pred eeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCCc
Q 022573 88 YLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDS 166 (295)
Q Consensus 88 ~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~~ 166 (295)
|+.+||.|+ +. +..|+.+++ +||++|++..||+||+|+|+||+++|++++||+ .|+++||+|||.+++
T Consensus 251 ~~~~qy~Np--~n--~~ah~~ttg----~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~--- 319 (429)
T PLN03013 251 YMLQQFDNP--AN--PKIHYETTG----PEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESD--- 319 (429)
T ss_pred EeCCCCCCH--HH--HHHHHHHHH----HHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCc---
Confidence 667777533 21 223554444 666677776899999999999999999999985 899999999999975
Q ss_pred cchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhC
Q 022573 167 GKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEG 246 (295)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~g 246 (295)
.+..|... ++. .+|++...+. ..++..++|+++.|+|+|+++++++|++++|
T Consensus 320 -----~l~~g~~~-------------------~~~-i~Glg~~~ip---~~~~~~~vD~vv~VsD~ea~~a~r~La~~eG 371 (429)
T PLN03013 320 -----ILSGGKPG-------------------PHK-IQGIGAGFIP---KNLDQKIMDEVIAISSEEAIETAKQLALKEG 371 (429)
T ss_pred -----hhhCCCCC-------------------Ccc-cCcccCCcCC---HhHHHHhccEEEEECHHHHHHHHHHHHHHcC
Confidence 23233221 222 2455433222 2244567899999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHhcCCCC-CCCeE-EEEecCCCcCChHHH
Q 022573 247 IFPALEASHALAFLEKLCPTLP-NGAKV-VVNCSGGGDKDVDTV 288 (295)
Q Consensus 247 i~~~~ssa~a~aa~~~~~~~~~-~~~~v-v~v~tg~g~~~~~~~ 288 (295)
+++||++|++++++++++++.. .+++| +++++++|++|.+..
T Consensus 372 i~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 372 LMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPRC 415 (429)
T ss_pred CEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhhh
Confidence 9999999999999999987543 45654 678888999999985
No 60
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=2.8e-38 Score=280.67 Aligned_cols=225 Identities=17% Similarity=0.225 Sum_probs=171.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--chhHHHHHHHHHHHhccCCce
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVGNLEKSY 87 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~~~~~~~~~~~~~~~~~~~~~ 87 (295)
..|+++|+||||+|+|++|+++|++|+||||++.+ +.|+++++.+||+|+.++. +++++.+.+ ++++++. +.+
T Consensus 60 ~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~---~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a-~~l~~~~-~~~ 134 (290)
T TIGR01138 60 DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMS---QERKAAMRAYGAELILVTKEEGMEGARDLA-LELANRG-EGK 134 (290)
T ss_pred CEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCChHHHHHHH-HHHHHhC-CCC
Confidence 45566899999999999999999999999999754 3578899999999999987 356665444 5566653 234
Q ss_pred eeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCCCc
Q 022573 88 YLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDS 166 (295)
Q Consensus 88 ~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~~~ 166 (295)
| .+|+.|+.. +..++.+++ .||++|++..+|+||+|+|+|||++|++.+||. .|++|||+|||.+++.
T Consensus 135 ~-~~~~~~~~~----~~~~~~t~~----~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~-- 203 (290)
T TIGR01138 135 L-LDQFNNPDN----PYAHYTSTG----PEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSS-- 203 (290)
T ss_pred C-CCccCCccc----HHHHhHhHH----HHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCC--
Confidence 4 366654321 122344544 555677766799999999999999999999985 8999999999998741
Q ss_pred cchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhC
Q 022573 167 GKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEG 246 (295)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~g 246 (295)
+ .+ ..++.+++. +.+ +...++|+++.|+|+|+++++++|++++|
T Consensus 204 ------~-~g----------------------~~~~~~~~~-----~~~--~~~~~~d~~v~V~d~e~~~a~~~l~~~~g 247 (290)
T TIGR01138 204 ------I-PG----------------------IRRWPTEYL-----PGI--FDASLVDRVLDIHQRDAENTMRELAVREG 247 (290)
T ss_pred ------c-cC----------------------CCCCCCCcC-----Ccc--cChhhCcEEEEECHHHHHHHHHHHHHHhC
Confidence 1 11 011111111 111 23445789999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHH
Q 022573 247 IFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 287 (295)
Q Consensus 247 i~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~ 287 (295)
+++||++|+++++++++++++ ++++||+|+||+|.+|+++
T Consensus 248 i~~g~ssga~laa~~~~~~~~-~~~~vv~v~~d~g~ky~~~ 287 (290)
T TIGR01138 248 IFCGVSSGGAVAAALRLAREL-PDAVVVAIICDRGDRYLST 287 (290)
T ss_pred ceEcHhHHHHHHHHHHHHHHC-CCCeEEEEECCCCccccCc
Confidence 999999999999999988776 5789999999999999985
No 61
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1e-37 Score=286.84 Aligned_cols=253 Identities=16% Similarity=0.133 Sum_probs=190.7
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeee
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLT 90 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (295)
.|+++|+||||+|+|++|+++|++|+||||++.+ +.|++.++.+||+|+.++++++++...+ ++++++ .+.+|+.
T Consensus 115 ~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~---~~K~~~ir~~GAeVi~~~~~~~~a~~~a-~~~a~~-~g~~~v~ 189 (396)
T TIGR03528 115 TFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSA---QIRLENIRAEGAECTITDLNYDDAVRLA-WKMAQE-NGWVMVQ 189 (396)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCc---HHHHHHHHhcCCEEEEECCCHHHHHHHH-HHHHHh-cCcEeec
Confidence 4556799999999999999999999999999754 3688899999999999999888887666 455554 2334432
Q ss_pred ----CcccCCCCCchhhhhhhhhhhHHHHHHHHHHhC-CCCCEEEEecCCchhHHHhhhhhhc--CC-CceEEEeecCCC
Q 022573 91 ----GTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG-GKPDVLLACVGSGSNALGLFHEFIN--DE-DVRLIGVEAAGF 162 (295)
Q Consensus 91 ----~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~-~~~d~vvv~vG~Gg~~~G~~~~~~~--~~-~~~vi~ve~~~~ 162 (295)
.++.|.+| +++.|++|++.|+.+|+.. .+ ..||+||+|+|+||+++|++.++++ .+ .++||+|||+++
T Consensus 190 ~~~~~~~~~~~~---~~i~G~~Tig~EI~eQl~~-~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a 265 (396)
T TIGR03528 190 DTAWEGYEKIPT---WIMQGYGTLALEALEQLKE-QGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAA 265 (396)
T ss_pred cccccccccCch---HHHHHHhHHHHHHHHHHhh-cCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCC
Confidence 14433223 3578999988888766522 11 3699999999999999999888842 33 359999999998
Q ss_pred CCCccchhhhhcc--Cceeeeeccccccccccccccc-ccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHH
Q 022573 163 GLDSGKHAATLAK--GEVGVYHGAMSYLLQDEEGQIL-GTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQ 239 (295)
Q Consensus 163 ~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~-~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~ 239 (295)
+ ++..++.. +.+.. .. .++|+++|+.++.++.....+...++|+++.|+|+|+.++++
T Consensus 266 ~----~l~~s~~~~~g~~~~---------------~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r 326 (396)
T TIGR03528 266 D----CLYRSAIADDGKPHF---------------VTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMR 326 (396)
T ss_pred c----hHHHHHHhcCCCEEE---------------eCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHH
Confidence 6 45666654 44332 11 257899999865555433335556789999999999999999
Q ss_pred HHHH----HhCCCCCcchhhHHHHHHHhc---------C--CCCCCCeEEEEecCCCcCChHHHHHhH
Q 022573 240 RLCR----LEGIFPALEASHALAFLEKLC---------P--TLPNGAKVVVNCSGGGDKDVDTVVNYR 292 (295)
Q Consensus 240 ~l~~----~~gi~~~~ssa~a~aa~~~~~---------~--~~~~~~~vv~v~tg~g~~~~~~~~~~~ 292 (295)
+|++ +++++++|++|+++|++..+. + .+.++++||+++|| |+.+.+.+.+.+
T Consensus 327 ~La~~~~~~~~~~~epsga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~tg-gn~d~~~~~~~~ 393 (396)
T TIGR03528 327 ILGNPLKGDPRVISGESGAVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLISTE-GDTDPDNYRKIV 393 (396)
T ss_pred HHhcccCCCCceeecCcHHHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEECC-CCCCHHHHHHHh
Confidence 9998 578999999999995553222 1 14468899999998 799999988765
No 62
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1e-37 Score=288.43 Aligned_cols=280 Identities=33% Similarity=0.414 Sum_probs=199.1
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhH-----------
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKE----------- 70 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~----------- 70 (295)
.|++.|...+|+++|+||||+|+|++|+++|++|+||||+.+...++.|+++|+.+||+|+.+++++++
T Consensus 120 ~a~~~G~~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~ 199 (427)
T PRK12391 120 YNKKEGIKRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPD 199 (427)
T ss_pred HHHHCCCCEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCcc
Confidence 357888889998878899999999999999999999999854333346788999999999999986544
Q ss_pred -------HHHHHHHHHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhh
Q 022573 71 -------ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLF 143 (295)
Q Consensus 71 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~ 143 (295)
++.++.+...+ .++.+|+.++. .+ .++.|+.+++.|+.+|+ +..+..||+||+|+|+||+++|++
T Consensus 200 ~~gsl~~ai~~A~e~a~~-~~~~~y~~~s~--~~----~~~~~~~~ig~Ei~~Ql-~~~g~~pD~Vv~~vG~Gg~~aGi~ 271 (427)
T PRK12391 200 HPGSLGIAISEAVEDAAK-RPDTKYALGSV--LN----HVLLHQTVIGLEAKKQL-ELAGEYPDVVIGCVGGGSNFAGLA 271 (427)
T ss_pred ccccHHHHHHHHHHHHHh-CCCcEEEcCCC--Cc----HHHhhHHHHHHHHHHHH-HhcCCCCCEEEEecCchHHHHHHH
Confidence 23444433333 23445664432 12 13567878888877665 233457999999999999999999
Q ss_pred hhhh----cC-CCceEEEeecCCCCCCccchhhhhccCceeeeeccccccccccccc-ccccccccccCCCCCCCchhHH
Q 022573 144 HEFI----ND-EDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQ-ILGTHSVGVGLEYPGVGPEISF 217 (295)
Q Consensus 144 ~~~~----~~-~~~~vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~i~~gl~~~~~~~~~~~ 217 (295)
.+|. .+ +.+|||+|||.+++.+....+... .|...... ....+...+. ...+.+.++||++.+..+.+..
T Consensus 272 ~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~-~gd~~~~~---p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~ 347 (427)
T PRK12391 272 FPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYD-FGDTAGLT---PLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSL 347 (427)
T ss_pred HHHHHHHhcCCCCceEEEEeeccchhhcccccccc-ccccccCC---ccceeEecCCCCCCccccccccccCCchHHHHH
Confidence 8773 14 889999999999853211000000 11000000 0000001111 2234566778887666655555
Q ss_pred HhhcCCceEEEeCHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC---CCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 218 LRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT---LPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 218 ~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~---~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
+.+....+.+.|+|+|+.+++++|++++||+++|++|++++++++++++ .+.+++||+++||+|+.+++.+.+++.
T Consensus 348 l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~d~~~y~~~l~ 426 (427)
T PRK12391 348 LVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHGLLDLAAYDAYLA 426 (427)
T ss_pred HHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCCHHHHHHHhc
Confidence 6666666899999999999999999999999999999999999998753 234789999999999999999988764
No 63
>PLN02569 threonine synthase
Probab=100.00 E-value=7.5e-38 Score=293.17 Aligned_cols=251 Identities=19% Similarity=0.209 Sum_probs=193.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceee
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYL 89 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (295)
..|+++|+||+|.|+|++|+++|++|+||+|++... ..|+.+++.|||+|+.++++++++...+ +++.++ .++|.
T Consensus 188 ~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~--~~k~~qi~a~GA~Vi~v~g~~d~a~~~a-~e~~~~--~~~~~ 262 (484)
T PLN02569 188 VGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKIS--IAQLVQPIANGALVLSIDTDFDGCMRLI-REVTAE--LPIYL 262 (484)
T ss_pred cEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCC--HHHHHHHHhcCCEEEEECCCHHHHHHHH-HHHHHH--cCCEe
Confidence 345567999999999999999999999999996322 3678899999999999999999987655 455554 34666
Q ss_pred eCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCC-CCCEEEEecCCchhHHHhhhhhhc-------CCCceEEEeecCC
Q 022573 90 TGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG-KPDVLLACVGSGSNALGLFHEFIN-------DEDVRLIGVEAAG 161 (295)
Q Consensus 90 ~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~-~~d~vvv~vG~Gg~~~G~~~~~~~-------~~~~~vi~ve~~~ 161 (295)
.+++ ||+. ++||+|+++|+. +|++. .||+||+|+|+||+++|++++|++ .+.+|+|+||+++
T Consensus 263 ~n~~---Np~~---ieG~kT~a~EI~----eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g 332 (484)
T PLN02569 263 ANSL---NSLR---LEGQKTAAIEIL----QQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAAN 332 (484)
T ss_pred cCCC---Ccch---hHhHHHHHHHHH----HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCC
Confidence 6665 5653 589988776665 56654 499999999999999999999974 3568999999999
Q ss_pred CCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCc--hhHHHhhcCCceEEEeCHHHHHHHHH
Q 022573 162 FGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGP--EISFLRDTGRAEFYTATDQEAVQAYQ 239 (295)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~--~~~~~~~~~~~~~~~V~d~e~~~a~~ 239 (295)
++ .+..++..|..... ....+.++++++....... ......+...+.++.|+|+|++++++
T Consensus 333 ~~----pl~~a~~~G~~~~~-------------~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~ 395 (484)
T PLN02569 333 AN----PLYRAYKSGWEEFK-------------PVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQA 395 (484)
T ss_pred Cc----HHHHHHHcCCCccc-------------cCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHH
Confidence 86 34556655543110 1223578888877543222 11222233345679999999999999
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573 240 RLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVDTVVNYRY 293 (295)
Q Consensus 240 ~l~~~~gi~~~~ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~~~~~~~~~~ 293 (295)
+ ++++|++++|+||++++|++++.++ +.++++||+++||+|.||.+...++..
T Consensus 396 ~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~~~~~~~ 450 (484)
T PLN02569 396 E-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQSKIDYHS 450 (484)
T ss_pred H-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhHHHHhcc
Confidence 9 8899999999999999999998864 668899999999999999998777654
No 64
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=5.5e-38 Score=283.76 Aligned_cols=248 Identities=26% Similarity=0.379 Sum_probs=189.2
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
|++.+.+++|+ +|+||||+|+|++|+.+|++|++|||++.+ +.|+++++.+||+|+.++.+++++...+ ++++++
T Consensus 65 a~~~g~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~---~~k~~~l~~~GA~Vi~~~~~~~~~~~~a-~~~~~~ 139 (324)
T cd01563 65 AKELGVKAVAC-ASTGNTSASLAAYAARAGIKCVVFLPAGKA---LGKLAQALAYGATVLAVEGNFDDALRLV-RELAEE 139 (324)
T ss_pred HHHcCCCEEEE-eCCCHHHHHHHHHHHHcCCceEEEEeCCCC---HHHHHHHHHcCCEEEEECCcHHHHHHHH-HHHHHh
Confidence 55667776665 689999999999999999999999999753 4688899999999999999888877655 556665
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhC-CCCCEEEEecCCchhHHHhhhhhhc-C------CCceE
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG-GKPDVLLACVGSGSNALGLFHEFIN-D------EDVRL 154 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~-~~~d~vvv~vG~Gg~~~G~~~~~~~-~------~~~~v 154 (295)
. .+|+ +++. ||. .+.||.+++.|+. +|++ ..||+||+|+|+|||++|++.+|+. . +.++|
T Consensus 140 ~--~~~~-~~~~--n~~---~~~g~~t~~~Ei~----~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~v 207 (324)
T cd01563 140 N--WIYL-SNSL--NPY---RLEGQKTIAFEIA----EQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRM 207 (324)
T ss_pred c--Ceec-cCCC--Ccc---eecchhhhHHHHH----HHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeE
Confidence 2 4444 4443 332 2467777666665 5554 3699999999999999999999974 2 68999
Q ss_pred EEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCc--hhHHHhhcCCceEEEeCHH
Q 022573 155 IGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGP--EISFLRDTGRAEFYTATDQ 232 (295)
Q Consensus 155 i~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~--~~~~~~~~~~~~~~~V~d~ 232 (295)
|+|||.+++ .+..+++.|.... ......+++++|++++.... ....+...+.++++.|+|+
T Consensus 208 igve~~~~~----~~~~~~~~g~~~~-------------~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~ 270 (324)
T cd01563 208 VGVQAEGAA----PIVRAFKEGKDDI-------------EPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDE 270 (324)
T ss_pred EEEecCCCC----HHHHHHHcCCCcc-------------CcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHH
Confidence 999999874 3344555553210 01223577888876543221 1223444567899999999
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCC
Q 022573 233 EAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKD 284 (295)
Q Consensus 233 e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~ 284 (295)
|+++++++|++++|++++|++|+++++++++.++ +.++++||+++||+|.++
T Consensus 271 e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 271 EILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred HHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 9999999999999999999999999999998765 467899999999999874
No 65
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.4e-37 Score=280.76 Aligned_cols=236 Identities=20% Similarity=0.268 Sum_probs=179.9
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
|++.|.+.+|+ +|+||+|.|+|++|+++|++|+||||++.+ +.|+++++.|||+|+.++++++++... +++
T Consensus 92 a~~~g~~~vv~-aSsGN~g~slA~~aa~~G~~~~i~vP~~~~---~~k~~~i~~~GA~vi~v~~~~~~~~~~-----a~~ 162 (338)
T PRK06450 92 LAEKGIKQISE-DSSGNAGASIAAYGAAAGIEVKIFVPETAS---GGKLKQIESYGAEVVRVRGSREDVAKA-----AEN 162 (338)
T ss_pred HHHcCCCEEEE-ECCcHHHHHHHHHHHHcCCCEEEEEcCCCC---HHHHHHHHHcCCEEEEECCCHHHHHHH-----HHh
Confidence 56677776665 689999999999999999999999999754 468889999999999999988765432 232
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhC-CCCCEEEEecCCchhHHHhhhhhhc-------CCCceE
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG-GKPDVLLACVGSGSNALGLFHEFIN-------DEDVRL 154 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~-~~~d~vvv~vG~Gg~~~G~~~~~~~-------~~~~~v 154 (295)
.+.+|+ +++. ||+ .++|++|+++|+. +|++ ..||+||+|+|+||+++|++++|++ .+.+|+
T Consensus 163 -~g~~~~-~~~~--np~---~ieG~kTia~EI~----eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~pri 231 (338)
T PRK06450 163 -SGYYYA-SHVL--QPQ---FRDGIRTLAYEIA----KDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKI 231 (338)
T ss_pred -cCeEec-cCCC--Ccc---HHHHHHHHHHHHH----HHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeE
Confidence 233554 3332 554 4689988887765 5555 3599999999999999999999974 245899
Q ss_pred EEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCch---hHHHhhcCCceEEEeCH
Q 022573 155 IGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPE---ISFLRDTGRAEFYTATD 231 (295)
Q Consensus 155 i~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~---~~~~~~~~~~~~~~V~d 231 (295)
|+|||+++++ +..++..+... ....+.++++||.++.+... +..++. . +..+.|+|
T Consensus 232 i~Vq~~g~~p----~~~a~~~~~~~---------------~~~~~~tia~~l~~~~p~~~~~~~~~i~~-~-g~~v~V~d 290 (338)
T PRK06450 232 VAVQTEQVSP----LCAKFKGISYT---------------PPDKVTSIADALVSTRPFLLDYMVKALSE-Y-GECIVVSD 290 (338)
T ss_pred EEEeeCCCCH----HHHHhcCCCCC---------------CCCCCCcceeeeecCCCCCHHHHHHHHHh-c-CcEEEECH
Confidence 9999999863 34455422111 12246788888865433221 233444 3 68999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCCh
Q 022573 232 QEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDV 285 (295)
Q Consensus 232 ~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~ 285 (295)
+|+++++++|++ +|++++|++|+++++++++ ++++||+++||+|.|++
T Consensus 291 ~ei~~a~~~La~-~Gi~vepssaaalAa~~~l-----~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 291 NEIVEAWKELAK-KGLLVEYSSATVYAAYKKY-----SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred HHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC-----CCCCEEEEeCCCCccCC
Confidence 999999999987 7999999999999999986 35799999999999864
No 66
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=3.6e-37 Score=277.75 Aligned_cols=247 Identities=23% Similarity=0.298 Sum_probs=182.1
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
.|+++|.+++|+ +|+||||+|+|++|+++|++|+||||+..+ ..|+++++.+||+|+.++++++++...+ +++.+
T Consensus 57 ~a~~~g~~~lv~-aSsGN~g~alA~~aa~~G~~~~ivvp~~~~---~~~~~~l~~~GA~V~~~~~~~~~~~~~a-~~~~~ 131 (319)
T PRK06381 57 RAMRLGYSGITV-GTCGNYGASIAYFARLYGLKAVIFIPRSYS---NSRVKEMEKYGAEIIYVDGKYEEAVERS-RKFAK 131 (319)
T ss_pred HHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCC---HHHHHHHHHcCCEEEEcCCCHHHHHHHH-HHHHH
Confidence 367788877665 689999999999999999999999999643 3678899999999999999888777665 34555
Q ss_pred ccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-------CCCceE
Q 022573 82 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRL 154 (295)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-------~~~~~v 154 (295)
+ +++|..+++. .|| .+.++|+++++.|+. +|++..||+||+|+|+||+++|++++|+. .|.++|
T Consensus 132 ~--~~~~~~~~~~-~n~--~~~~~G~~t~a~Ei~----~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~v 202 (319)
T PRK06381 132 E--NGIYDANPGS-VNS--VVDIEAYSAIAYEIY----EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRM 202 (319)
T ss_pred H--cCcEecCCCC-CCc--chHhhhHHHHHHHHH----HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEE
Confidence 4 3455544332 122 123578877776665 55555699999999999999999999974 588999
Q ss_pred EEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccc-cCCCCC-----CCch-hHHHhhcCCceEE
Q 022573 155 IGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV-GLEYPG-----VGPE-ISFLRDTGRAEFY 227 (295)
Q Consensus 155 i~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gl~~~~-----~~~~-~~~~~~~~~~~~~ 227 (295)
|+|+|.+++ .+..++..|...... . ...++.+ .+..+. .... ...+..++.++++
T Consensus 203 igVe~~~~~----~~~~~~~~g~~~~~~-------------~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 264 (319)
T PRK06381 203 IGVSTSGGN----QIVESFKRGSSEVVD-------------L-EVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAF 264 (319)
T ss_pred EEEeeCCCC----HHHHHHHcCCCcccC-------------C-CcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEE
Confidence 999999875 335556555433110 0 1122322 111111 1111 1223455667899
Q ss_pred EeCHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCC
Q 022573 228 TATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGG 280 (295)
Q Consensus 228 ~V~d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~ 280 (295)
.|+|+|+++++++|++++||+++|++|+++++++++.++...+++||+++||+
T Consensus 265 ~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~~~~vv~i~tGg 317 (319)
T PRK06381 265 GFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGVNDNVVAVITGR 317 (319)
T ss_pred EECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCCCCcEEEEecCC
Confidence 99999999999999999999999999999999999987644458999999985
No 67
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=6.8e-37 Score=288.72 Aligned_cols=243 Identities=19% Similarity=0.237 Sum_probs=180.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc--hhHH--HHHHHHHHHhccCC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEA--SSEAIRNWVGNLEK 85 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~--~~~~--~~~~~~~~~~~~~~ 85 (295)
..|+++|+||||+|+|++|+++|++|+||||++.+ +.|+++++.+||+|+.+++. +++. ..+..++++++.++
T Consensus 63 ~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~ 139 (454)
T TIGR01137 63 DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMS---NEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPG 139 (454)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcC---HHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCC
Confidence 34555799999999999999999999999998643 35888999999999999874 3322 11222445554333
Q ss_pred ceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCCCC
Q 022573 86 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~~~ 164 (295)
+|+++||.|+.+ +..|+.+++ .||++|++..||+||+|+|||||++|++.+|+. .|.+|||+|||.++.
T Consensus 140 -~~~~~~~~~~~~----~~~~~~t~~----~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~- 209 (454)
T TIGR01137 140 -AHILDQYNNPSN----PLAHYDGTG----PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSI- 209 (454)
T ss_pred -cEecccCCChhh----HHHHHHhhH----HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCc-
Confidence 566677764321 234665555 455566665799999999999999999999985 889999999999863
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 244 (295)
+..+..... .....+.+.|++.+.+. ..+....+|+++.|+|+|+++++++|+++
T Consensus 210 --------~~~~~~~~~--------------~~~~~~~~~g~~~~~~~---~~~~~~~~d~~~~V~~~e~~~a~~~l~~~ 264 (454)
T TIGR01137 210 --------LAQPENLNK--------------TGRTPYKVEGIGYDFIP---TVLDRKVVDEWIKTDDKESFKMARRLIKE 264 (454)
T ss_pred --------ccCCCcccC--------------CCCCCccCCCCCCCCCC---CcCCchhCCeEEEECHHHHHHHHHHHHHH
Confidence 211211000 00012334455422111 12345567899999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhcC-CCCCCCeEEEEecCCCcCChHHHHH
Q 022573 245 EGIFPALEASHALAFLEKLCP-TLPNGAKVVVNCSGGGDKDVDTVVN 290 (295)
Q Consensus 245 ~gi~~~~ssa~a~aa~~~~~~-~~~~~~~vv~v~tg~g~~~~~~~~~ 290 (295)
+|++++|+||+++++++++++ +++++++||+++||+|.+|++++.+
T Consensus 265 ~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~ 311 (454)
T TIGR01137 265 EGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLN 311 (454)
T ss_pred hCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccC
Confidence 999999999999999999887 5777899999999999999998755
No 68
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=9.1e-37 Score=280.51 Aligned_cols=260 Identities=18% Similarity=0.162 Sum_probs=190.1
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+.+.+.+.+|+ +|+||||+|+|++|+++|++|+||||++.+.+ +.+.++.+||+|+.++++++++.+.+ ++++++
T Consensus 112 a~~~g~~~Vv~-aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~---~~~~~~~~ga~vv~v~g~~d~a~~~a-~~~a~~ 186 (398)
T TIGR03844 112 LKERGGKTLVV-ASAGNTGRAFAEVSAITGQPVILVVPKSSADR---LWTTEPASSVLLVTVDGDYTDAIALA-DRIATL 186 (398)
T ss_pred HHHcCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEECCChHHH---HHHHhhCCcEEEEECCCCHHHHHHHH-HHHHHh
Confidence 45667666665 68999999999999999999999999974321 22234889999999999999988666 455554
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc--------CCCceE
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN--------DEDVRL 154 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~--------~~~~~v 154 (295)
+++|.++++. || +.++|++|+++|+.+ |++..||+||+|+|+|.++.|++.++++ ...|++
T Consensus 187 --~g~~~~~~~~--~p---~~ieG~~Ti~~Ei~e----ql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l 255 (398)
T TIGR03844 187 --PGFVPEGGAR--NV---ARRDGMGTVMLDAAV----TIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRL 255 (398)
T ss_pred --CCccccCCCC--CH---HHHhhHHHHHHHHHH----HcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCE
Confidence 3455433322 44 357999999988864 4553599999999999888888888753 255899
Q ss_pred EEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchh----HHHhhcCCceEEEeC
Q 022573 155 IGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEI----SFLRDTGRAEFYTAT 230 (295)
Q Consensus 155 i~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~----~~~~~~~~~~~~~V~ 230 (295)
++||+++++ .++.++..|.....+.. ...........++++++......... ....+...+.++.|+
T Consensus 256 ~~VQ~eg~~----p~~~a~~~g~~~~~~~~-----~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vs 326 (398)
T TIGR03844 256 HLAQNLPFV----PMVNAWQEGRREIIPES-----DMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVS 326 (398)
T ss_pred EEEEcCCch----HHHHHHHcCCCcccccc-----CCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEEC
Confidence 999999986 45677877764321100 00000000015788888533221111 223344567899999
Q ss_pred HHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCChHH
Q 022573 231 DQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVDT 287 (295)
Q Consensus 231 d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~~~~ 287 (295)
|+|+++|+++|++++|++++|++|+++||++++.++ +.++++||+++||+|.|++..
T Consensus 327 d~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 327 NKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLRE 385 (398)
T ss_pred HHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHHh
Confidence 999999999999999999999999999999998764 668899999999999998765
No 69
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=1.1e-36 Score=285.29 Aligned_cols=241 Identities=20% Similarity=0.234 Sum_probs=185.7
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
|++.+.+++|+ +|+||||+|+|++|+++|++|+||||++.+ +.|+++++.|||+|+.++++++++...+ ++++++
T Consensus 107 a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~vp~~~~---~~k~~~~~~~GA~vi~v~~~~~~~~~~a-~~~~~~ 181 (442)
T PRK05638 107 GLPYAANGFIV-ASDGNAAASVAAYSARAGKEAFVVVPRKVD---KGKLIQMIAFGAKIIRYGESVDEAIEYA-EELARL 181 (442)
T ss_pred HHHcCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEEEeCCCC---HHHHHHHHhcCcEEEEECCCHHHHHHHH-HHHHHh
Confidence 56678887776 689999999999999999999999999643 4688999999999999999998887655 455554
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-C------CCceEE
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-D------EDVRLI 155 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~------~~~~vi 155 (295)
.++|..+++. ||+. ++||+|+++|+.+| ++ ||+||+|+|+||+++|++.+|++ . ..+|||
T Consensus 182 --~~~~~~~~~~--np~~---~eG~~t~a~Ei~eq----~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii 248 (442)
T PRK05638 182 --NGLYNVTPEY--NIIG---LEGQKTIAFELWEE----IN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLI 248 (442)
T ss_pred --CCeEecCCCC--ChhH---hhhHHHHHHHHHHH----HC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEE
Confidence 3466655543 5553 67888888777654 43 99999999999999999999975 2 358999
Q ss_pred EeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCC--CCchh-HHHhhcCCceEEEeCHH
Q 022573 156 GVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPG--VGPEI-SFLRDTGRAEFYTATDQ 232 (295)
Q Consensus 156 ~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~--~~~~~-~~~~~~~~~~~~~V~d~ 232 (295)
+|||+++++ +..++..+.. ....++++|+.+.. ..... ..++. ..+.++.|+|+
T Consensus 249 ~Vq~~~~~p----~~~~~~~~~~------------------~~~~t~a~gl~~~~p~~~~~~~~~i~~-~~g~~~~v~d~ 305 (442)
T PRK05638 249 AVQTERCNP----IASEILGNKT------------------KCNETKALGLYVKNPVMKEYVSEAIKE-SGGTAVVVNEE 305 (442)
T ss_pred EEecCCCCH----HHHHHhcCCC------------------CCCCceeeeEeeCCCCCHHHHHHHHHH-hCCEEEEECHH
Confidence 999998863 3444443321 12456777764322 22222 33444 35678899999
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCCh
Q 022573 233 EAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDV 285 (295)
Q Consensus 233 e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~~ 285 (295)
++.++++.+++ +||+++|++|+++|+++++.++ +.++++||+++||+|.|+.
T Consensus 306 ~i~~a~~~l~~-eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 306 EIMAGEKLLAK-EGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HHHHHHHHHHh-cCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 99998887764 8999999999999999999874 6788999999999999984
No 70
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.9e-36 Score=274.17 Aligned_cols=250 Identities=21% Similarity=0.241 Sum_probs=186.7
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC-CcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
+++.+..++|+ +|+||||+|+|++|+.+|++|+||||++ .+ +.|++.++.+||+|+.++++++++.+.+ +++.+
T Consensus 66 a~~~g~~~vv~-aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s---~~k~~~~~~~GA~Vi~~~~~~~~~~~~~-~~~~~ 140 (328)
T TIGR00260 66 ALELGNDTVLC-ASTGNTGAAAAAYAGKAGVKVVILYPAGKIS---LGKLAQALGYNAEVVAIDGNFDDAQRLV-KQLFG 140 (328)
T ss_pred HHHcCCCEEEE-eCCcHHHHHHHHHhccCCCcEEEEECCCCCC---HHHHHHHHhcCcEEEEecCCHHHHHHHH-HHHHh
Confidence 45667666555 7899999999999999999999999996 43 4688899999999999999988876554 45565
Q ss_pred ccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCC-CCCEEEEecCCchhHHHhhhhhhc---CC---CceE
Q 022573 82 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG-KPDVLLACVGSGSNALGLFHEFIN---DE---DVRL 154 (295)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~-~~d~vvv~vG~Gg~~~G~~~~~~~---~~---~~~v 154 (295)
+. .+|..+++ |..|+. ++||.+++.|+. +|++. .||+||+|+|+||+++|++.+|+. .. .+++
T Consensus 141 ~~--~~~~~~~~-n~~~~~---~~g~~t~~~Ei~----~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v 210 (328)
T TIGR00260 141 DK--EALGLNSV-NSIPYR---LEGQKTYAFEAV----EQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVK 210 (328)
T ss_pred hc--CeeecccC-CCCCeE---eeeehhHHHHHH----HHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCce
Confidence 42 34444433 212543 578877776665 55543 699999999999999999999974 11 3499
Q ss_pred EEeecCCCCCCccchhhhh-ccCceeeeecccccccccccccccccccccccCCCCCCCc--hhHHHhhcCCceEEEeCH
Q 022573 155 IGVEAAGFGLDSGKHAATL-AKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGP--EISFLRDTGRAEFYTATD 231 (295)
Q Consensus 155 i~ve~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~--~~~~~~~~~~~~~~~V~d 231 (295)
++|||.++++ +...+ ..+.... .....++++++.+..+.. ....+.+.+.++.+.|+|
T Consensus 211 ~~Ve~~~~~~----~~~~~~~~g~~~~---------------~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d 271 (328)
T TIGR00260 211 RGIQAEGAAD----IVRAFLESGQWEP---------------IEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSD 271 (328)
T ss_pred eEEEcCCCCh----HHHHHHcCCCcCc---------------CCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCH
Confidence 9999999852 22233 2333211 112467777775432221 123345567889999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCChH
Q 022573 232 QEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVD 286 (295)
Q Consensus 232 ~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~~~ 286 (295)
+|++++++++++++|++++|++|+++++++++.++ +.++++||+++||+|.++.+
T Consensus 272 ~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 272 EEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDPE 328 (328)
T ss_pred HHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCCC
Confidence 99999999999999999999999999999998763 56788999999999998753
No 71
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.7e-36 Score=275.08 Aligned_cols=247 Identities=21% Similarity=0.288 Sum_probs=176.8
Q ss_pred ccccCCcEEEEeC-CCChHHHHHHHHHHHcCCceEEEeeCCCc-----ccchhhHHHHHHcCCEEEEecCchh----HHH
Q 022573 3 AKRMGRKSIVAAT-GAGQHGVATAAACAKLALDCTVFMGTADM-----EKQSSKVLLMKLLGAQVKAVDGCFK----EAS 72 (295)
Q Consensus 3 a~~~~~~~~V~~~-ssGN~g~a~A~~a~~~G~~~~vv~p~~~~-----~~~~~~~~~l~~~GA~v~~~~~~~~----~~~ 72 (295)
|++.|..+++..+ |+||||+|+|++|+++|++|++|+|+..+ ..+..|+.+++.+||+|+.++.+++ +.+
T Consensus 62 a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~ 141 (337)
T PRK12390 62 ALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSW 141 (337)
T ss_pred HHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHH
Confidence 5677887777642 56999999999999999999999876422 1123577799999999999998654 444
Q ss_pred HHHHHHHHhccCCcee-eeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CC
Q 022573 73 SEAIRNWVGNLEKSYY-LTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DE 150 (295)
Q Consensus 73 ~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~ 150 (295)
..+.+. .++..+..| ++.. .+.||+. .+|+.+++.|+.+|+ .+++..||+||+|+|+|||++|++.+|+. .|
T Consensus 142 ~~~~~~-~~~~~~~~~~~~~~-~~~~~~~---~~G~~~~a~Ei~~q~-~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~ 215 (337)
T PRK12390 142 EDALED-VRAAGGKPYAIPAG-ASDHPLG---GLGFVGFAEEVRAQE-AELGFKFDYIVVCSVTGSTQAGMVVGFAADGR 215 (337)
T ss_pred HHHHHH-HHhCCCceEEeCCc-CCCCCcc---cHHHHHHHHHHHHHH-HhcCCCCCEEEEecCcchhHHHHHHHHHhcCC
Confidence 444333 333223344 3321 1224543 356666677777665 34656799999999999999999999985 78
Q ss_pred CceEEEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCC-CCchhHHHhhcCCceEEEe
Q 022573 151 DVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPG-VGPEISFLRDTGRAEFYTA 229 (295)
Q Consensus 151 ~~~vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~-~~~~~~~~~~~~~~~~~~V 229 (295)
++|||+|++.++.. +...+.. ....+++++++.+. ..+....+...++|+.|.|
T Consensus 216 ~~rvigV~~~~~~~--------~~~~~~~-----------------~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v 270 (337)
T PRK12390 216 ARRVIGIDASAKPE--------QTRAQVL-----------------RIARNTAELVELGRDITEDDVVLDERYAGPEYGL 270 (337)
T ss_pred CceEEEEEecCchH--------HHHHHHH-----------------HHHHHHHHHhCCCCCCChhhEEEecccccCCCCC
Confidence 89999999998742 1111100 01234444444321 1111112456678999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCc-chhhHHHHHHHhcCC--CCCCCeEEEEecCC
Q 022573 230 TDQEAVQAYQRLCRLEGIFPAL-EASHALAFLEKLCPT--LPNGAKVVVNCSGG 280 (295)
Q Consensus 230 ~d~e~~~a~~~l~~~~gi~~~~-ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~ 280 (295)
+|+|++++++++++++||+++| |||+++++++++.++ ++++++||+|||||
T Consensus 271 sd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~htgg 324 (337)
T PRK12390 271 PNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAHLGG 324 (337)
T ss_pred CCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 9999999999999999999999 599999999999863 77889999999986
No 72
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=5.1e-36 Score=271.84 Aligned_cols=259 Identities=17% Similarity=0.224 Sum_probs=185.3
Q ss_pred ccccCCcEEEEeC-CCChHHHHHHHHHHHcCCceEEEeeCCCc--c---cchhhHHHHHHcCCEEEEecCchh----HHH
Q 022573 3 AKRMGRKSIVAAT-GAGQHGVATAAACAKLALDCTVFMGTADM--E---KQSSKVLLMKLLGAQVKAVDGCFK----EAS 72 (295)
Q Consensus 3 a~~~~~~~~V~~~-ssGN~g~a~A~~a~~~G~~~~vv~p~~~~--~---~~~~~~~~l~~~GA~v~~~~~~~~----~~~ 72 (295)
|+++|+..+++.+ |+||||+|+|++|+++|++|+||||+..+ . ..+.|+++++.+||+|+.++..++ +.+
T Consensus 61 a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~ 140 (337)
T TIGR01274 61 AQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSW 140 (337)
T ss_pred HHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHH
Confidence 6778888777642 55999999999999999999999998421 1 124688899999999999998654 455
Q ss_pred HHHHHHHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCC
Q 022573 73 SEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DED 151 (295)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~ 151 (295)
.++.+.+.++.+..|+++.+. +.||+. .+|+.+++.|+.+|+ .+++..||+||+|+|+|||++|++.+++. .++
T Consensus 141 ~~a~~~~~~~~~~~~~i~~~~-~~~~~~---~~G~~~~~~Ei~eq~-~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~ 215 (337)
T TIGR01274 141 ERALEEVRGAGGKPYPIPAGC-SDHPLG---GLGFVGFAFEVREQE-GELGFKFDYVVVCSVTGSTQAGMVAGFAADGRK 215 (337)
T ss_pred HHHHHHHHhcCCceEEeCCCC-CCCccc---hhHHHHHHHHHHHHH-HhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCC
Confidence 455554444323346665432 124543 356666676766655 22455799999999999999999999975 788
Q ss_pred ceEEEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCC-CchhHHHhhcCCceEEEeC
Q 022573 152 VRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGV-GPEISFLRDTGRAEFYTAT 230 (295)
Q Consensus 152 ~~vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~-~~~~~~~~~~~~~~~~~V~ 230 (295)
+|||+|++.+++. +..... .....+++++++.... .+....+...+.++.|.|+
T Consensus 216 ~~vigV~~~~~~~--------~~~~~~-----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 270 (337)
T TIGR01274 216 DRVIGIDASATPE--------QTRAQI-----------------LRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVP 270 (337)
T ss_pred CeEEEEEecCCHH--------HHHHHH-----------------HHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCC
Confidence 9999999999742 111100 0013445555543211 1111234556678999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCc-chhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCChHHHHHhH
Q 022573 231 DQEAVQAYQRLCRLEGIFPAL-EASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVDTVVNYR 292 (295)
Q Consensus 231 d~e~~~a~~~l~~~~gi~~~~-ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~~~~~~~~~ 292 (295)
|+|+++++++|++++|++++| |+|+++++++++.++ ++++++||++||| |...+-.+.+.+
T Consensus 271 d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~~htG-G~~~~~~~~~~~ 334 (337)
T TIGR01274 271 NEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLYAHLG-GAPALNAYSFLF 334 (337)
T ss_pred CHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEEEeCC-ChhhhhhhHHHh
Confidence 999999999999999999888 699999999999874 6788999999998 555455455443
No 73
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=4.3e-36 Score=271.79 Aligned_cols=255 Identities=22% Similarity=0.234 Sum_probs=179.3
Q ss_pred ccccCCcEEEEeC-CCChHHHHHHHHHHHcCCceEEEeeCCCcccc-----hhhHHHHHHcCCEEEEecCc--hhHHHHH
Q 022573 3 AKRMGRKSIVAAT-GAGQHGVATAAACAKLALDCTVFMGTADMEKQ-----SSKVLLMKLLGAQVKAVDGC--FKEASSE 74 (295)
Q Consensus 3 a~~~~~~~~V~~~-ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~-----~~~~~~l~~~GA~v~~~~~~--~~~~~~~ 74 (295)
|++.|.+.+|+.+ |+||||+|+|++|+.+|++|+||||+..+..+ ..|++.++.+||+|+.++.+ ..+....
T Consensus 59 a~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~ 138 (331)
T PRK03910 59 ALAQGADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEE 138 (331)
T ss_pred HHHcCCCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHH
Confidence 4567777777643 34899999999999999999999999644211 25778999999999999874 1222222
Q ss_pred HHHHHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCce
Q 022573 75 AIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVR 153 (295)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~ 153 (295)
..+++.++....+++++|+. ||+. .+||.+++.|+.+|+.. .+..||+||+|+|||||++|++.+|+. .|+++
T Consensus 139 ~a~~l~~~~~~~~~~~~~~~--~~~~---~~g~~~~~~Ei~~q~~~-~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~ 212 (331)
T PRK03910 139 LAEELRAQGRRPYVIPVGGS--NALG---ALGYVACALEIAQQLAE-GGVDFDAVVVASGSGGTHAGLAAGLAALGPDIP 212 (331)
T ss_pred HHHHHHHcCCceEEECCCCC--Cchh---HHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCe
Confidence 33445554333566666654 4432 35766666666555421 123699999999999999999999985 88999
Q ss_pred EEEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCC-CCchhHHHhhcCCceEEEeCHH
Q 022573 154 LIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPG-VGPEISFLRDTGRAEFYTATDQ 232 (295)
Q Consensus 154 vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~-~~~~~~~~~~~~~~~~~~V~d~ 232 (295)
||+|||.+++. +..+ .. .....+++++++.+. ..+....+.+.++|+++.|+|+
T Consensus 213 vigVe~~~~~~----~~~~----~~-----------------~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~ 267 (331)
T PRK03910 213 VIGVTVSRSAA----EQEP----KV-----------------AKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTD 267 (331)
T ss_pred EEEEEecCCHH----HHHH----HH-----------------HHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCH
Confidence 99999998631 1110 00 001234555554331 1221123456678899999999
Q ss_pred HHHHHHHHHHHHhCCCCCc-chhhHHHHHHHhcCC--CCCCCeEEEEecCCCcCChHHHH
Q 022573 233 EAVQAYQRLCRLEGIFPAL-EASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVDTVV 289 (295)
Q Consensus 233 e~~~a~~~l~~~~gi~~~~-ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~g~~~~~~~~ 289 (295)
|+++++++|++++||+++| |+|+++++++++.++ ++++++||+|+|| |+.++--+.
T Consensus 268 e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~tG-G~~~~~~~~ 326 (331)
T PRK03910 268 EMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIHTG-GAPALFAYA 326 (331)
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEECC-ChHhhhhhh
Confidence 9999999999999999999 599999999998653 4568899999998 565544443
No 74
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=7.3e-36 Score=267.78 Aligned_cols=246 Identities=26% Similarity=0.286 Sum_probs=175.8
Q ss_pred ccccCCcEEEEeC-CCChHHHHHHHHHHHcCCceEEEeeCCCcc-----cchhhHHHHHHcCCEEEEecCchhHH----H
Q 022573 3 AKRMGRKSIVAAT-GAGQHGVATAAACAKLALDCTVFMGTADME-----KQSSKVLLMKLLGAQVKAVDGCFKEA----S 72 (295)
Q Consensus 3 a~~~~~~~~V~~~-ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~-----~~~~~~~~l~~~GA~v~~~~~~~~~~----~ 72 (295)
|++.|...+|+++ |+||||+|+|++|+++|++|+||||++.+. ....|+++++.+||+|+.++.++++. +
T Consensus 47 a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~ 126 (307)
T cd06449 47 ALAKGADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSF 126 (307)
T ss_pred HHHcCCCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHH
Confidence 4567777777653 579999999999999999999999986432 12357889999999999998865432 2
Q ss_pred HHHHHHHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCC
Q 022573 73 SEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DED 151 (295)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~ 151 (295)
.++.+.+.++....|+++++.. .||+. ++||.+++.|+.+|+.. .+..||+||+|+|||||++|++.+|+. .+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~G~~t~~~Ei~~q~~~-~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~ 201 (307)
T cd06449 127 EEAAEEVEAKGGKPYVIPAGGS-EHPLG---GLGYVGFVLEIAQQEEE-LGFKFDSIVVCSVTGSTHAGLSVGLAALGRQ 201 (307)
T ss_pred HHHHHHHHHcCCceEEecCCCC-CCccc---HHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCchHHHHHHHHHHHhcCCC
Confidence 2333333333223466666642 14432 46888888888776632 233699999999999999999999975 788
Q ss_pred ceEEEeecCCCCCCccchhhhhccCceeeeeccccccccccccccccccccc-ccCCCCCCCchhHHHhhcCCceEEEeC
Q 022573 152 VRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVG-VGLEYPGVGPEISFLRDTGRAEFYTAT 230 (295)
Q Consensus 152 ~~vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~-~gl~~~~~~~~~~~~~~~~~~~~~~V~ 230 (295)
+|||+|+|.+++.. ..+ .... .. .+++. .|+. .......+...+.|+++.|+
T Consensus 202 ~~ii~V~~~~~~~~----~~~----~~~~---------------~~-~~~~~~~g~~---~~~~~~~~~~~~~~~~~~v~ 254 (307)
T cd06449 202 RRVIGIDASAKPEK----TKA----QVLR---------------IA-QAKLAEEGLE---VKEEDVVLDDDYAAPEYGIP 254 (307)
T ss_pred CeEEEEEecCchHH----HHH----HHHH---------------HH-HHHHHHcCCC---CCcccEEEecCcccCCCCCC
Confidence 99999999997421 110 0000 00 01221 1221 11111224556678899999
Q ss_pred HHHHHHHHHHHHHHhCCCCCc-chhhHHHHHHHhcCC--CCCCCeEEEEecCC
Q 022573 231 DQEAVQAYQRLCRLEGIFPAL-EASHALAFLEKLCPT--LPNGAKVVVNCSGG 280 (295)
Q Consensus 231 d~e~~~a~~~l~~~~gi~~~~-ssa~a~aa~~~~~~~--~~~~~~vv~v~tg~ 280 (295)
|+|++++++++++++||+++| |+|++++++.+++++ ++++++||+|||||
T Consensus 255 d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 255 NDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred CHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 999999999999999999999 899999999999875 66789999999985
No 75
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-36 Score=260.60 Aligned_cols=238 Identities=20% Similarity=0.283 Sum_probs=184.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC-CcccchhhHHHHHHcCCEEEEecC--chhH---HHHHHHHHHHhcc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLLGAQVKAVDG--CFKE---ASSEAIRNWVGNL 83 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~l~~~GA~v~~~~~--~~~~---~~~~~~~~~~~~~ 83 (295)
.+++++||||+|+++|++|+..|++|+++||+. +. .|+..|+.+||+|++++. .+.. +...+ +++..+.
T Consensus 105 stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~----Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a-~~l~~~~ 179 (362)
T KOG1252|consen 105 STLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSK----EKRILLRALGAEIILTPPAAGMKGPESAIGKA-EELLNKT 179 (362)
T ss_pred eEEEecCCCchHHHHHHHHHHcCceEEEEechhhhH----HHHHHHHHcCCEEEecChHHccCChHHHHHHH-HHHHHhC
Confidence 788899999999999999999999999999995 43 467799999999999998 2222 55555 4566666
Q ss_pred CCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEeecCCC
Q 022573 84 EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGF 162 (295)
Q Consensus 84 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve~~~~ 162 (295)
+ ..|+.+||.|+.+.- .+ +..+++|||+|+.+.+|.||.++|||||++|+.+++|+ .|+++|++|||..+
T Consensus 180 p-na~~l~Qf~np~Np~----~h----y~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S 250 (362)
T KOG1252|consen 180 P-NAYILDQFHNPGNPL----AH----YETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQES 250 (362)
T ss_pred C-ChHHHHHhcCCCCcc----cc----cccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcc
Confidence 4 566788988763321 12 45677889999999999999999999999999999975 99999999999998
Q ss_pred CCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHH
Q 022573 163 GLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLC 242 (295)
Q Consensus 163 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~ 242 (295)
.. ..+... -+..+.|. |+++. ..+ ..++...+|+.+.+.++|+..+.|+|+
T Consensus 251 ~~---------~~~~~~----------------g~~~~~I~-GIGyg-~~p--~~ld~~~vd~~~~~~~d~A~~~Ar~La 301 (362)
T KOG1252|consen 251 IV---------LSGGKP----------------GPTFHKIQ-GIGYG-FIP--TTLDTKLVDEVLKVSSDEAIEMARRLA 301 (362)
T ss_pred ee---------ccCCCC----------------CCCcccee-ccccC-cCc--cccchHHHHHHHHhCCHHHHHHHHHHH
Confidence 42 122111 00123332 33321 111 235667778899999999999999999
Q ss_pred HHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEe-cCCCcCChHHHHH
Q 022573 243 RLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNC-SGGGDKDVDTVVN 290 (295)
Q Consensus 243 ~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~-tg~g~~~~~~~~~ 290 (295)
.++|+++|.|||++++++++++++.....+++++. .++|.+|++++.+
T Consensus 302 ~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~ 350 (362)
T KOG1252|consen 302 LEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLF 350 (362)
T ss_pred HhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhH
Confidence 99999999999999999999998765555555555 8889999998764
No 76
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=1.1e-34 Score=260.65 Aligned_cols=240 Identities=22% Similarity=0.214 Sum_probs=168.6
Q ss_pred ccccCCcEEEEeC-CCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC-chhHHHHHHH---H
Q 022573 3 AKRMGRKSIVAAT-GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG-CFKEASSEAI---R 77 (295)
Q Consensus 3 a~~~~~~~~V~~~-ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~-~~~~~~~~~~---~ 77 (295)
|+++|.+.+|+.+ |+||||+|+|++|+++|++|++|||+.... ..|..+++.+||+|+.++. ++.+....+. +
T Consensus 51 a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~ 128 (311)
T TIGR01275 51 ALSKGADTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEEL--NGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAE 128 (311)
T ss_pred HHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccC--CCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHH
Confidence 5677887777643 459999999999999999999999985321 2456678999999999986 4444332221 2
Q ss_pred HHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhC--CCCCEEEEecCCchhHHHhhhhhhc-CCCceE
Q 022573 78 NWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG--GKPDVLLACVGSGSNALGLFHEFIN-DEDVRL 154 (295)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~--~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~v 154 (295)
++.++.++.|++++++. ||+. ..||.+++.| |++|++ ..||+||+|+|||||++|++.+||. .|+++|
T Consensus 129 ~~~~~~~~~~~~p~~~~--~~~~---~~g~~~~~~E----I~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~v 199 (311)
T TIGR01275 129 ELEKEGRKPYVIPVGGS--NSLG---TLGYVEAVLE----IATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRP 199 (311)
T ss_pred HHHhcCCCeEEECCCCC--cHHH---HHHHHHHHHH----HHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcE
Confidence 22223234577777765 4432 3566544544 455554 2699999999999999999999985 888999
Q ss_pred EEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHH
Q 022573 155 IGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEA 234 (295)
Q Consensus 155 i~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~ 234 (295)
|+|++..+... ....+ .....++++++..+. .....+..++.+..+.|+|+|+
T Consensus 200 igV~~~~~~~~---~~~~~----------------------~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~v~d~e~ 252 (311)
T TIGR01275 200 VGVAVGRFGED---MTDKF----------------------VNLVKEIAEGLEVKA--SEVIPELDDYSGPGYGKPTSEV 252 (311)
T ss_pred EEEEecccHHH---HHHHH----------------------HHHHHHHHHHhCCCC--CCCEEEECCcccCcCCCCCHHH
Confidence 99998765210 00000 001345566654322 1111123345677899999999
Q ss_pred HHHHHHHHHHhCCCCCc-chhhHHHHHHHhcCCCC-CCCeEEEEecCC
Q 022573 235 VQAYQRLCRLEGIFPAL-EASHALAFLEKLCPTLP-NGAKVVVNCSGG 280 (295)
Q Consensus 235 ~~a~~~l~~~~gi~~~~-ssa~a~aa~~~~~~~~~-~~~~vv~v~tg~ 280 (295)
++++++|++++|++++| |+|++++++++++++.. ++++||+++||+
T Consensus 253 ~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG 300 (311)
T TIGR01275 253 AEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGG 300 (311)
T ss_pred HHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCC
Confidence 99999999999999999 69999999999865422 367999999985
No 77
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=242.84 Aligned_cols=259 Identities=16% Similarity=0.220 Sum_probs=197.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC----chhHHHHHHHHHHHhcc
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG----CFKEASSEAIRNWVGNL 83 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~----~~~~~~~~~~~~~~~~~ 83 (295)
++..|+++|+||+|+++|..|+.+|++|+|+||++.. +.|.+.++.+||+|..++. +.......+ ++.+.+.
T Consensus 99 ~gg~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs---~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~A-rr~an~~ 174 (391)
T KOG1481|consen 99 RGGTVVEGTAGSTGISLAHVARALGYKCHIYMPDDQS---QEKSDILEFLGAEVHRVPPAPIVDPNHYVNQA-RRAANET 174 (391)
T ss_pred cCceEEecCCCccchhHHHhhhhcCcceEEECCChHH---HHHHHHHHHhcceeeecCCcCccChhHHHHHH-HHHhhhc
Confidence 4688999999999999999999999999999999632 4678899999999999987 223333333 2233333
Q ss_pred CC-----ceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-C-CCceEEE
Q 022573 84 EK-----SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-D-EDVRLIG 156 (295)
Q Consensus 84 ~~-----~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~-~~~~vi~ 156 (295)
++ ..|..+||+|+.+|. .+ +..+++|||.|..+.+|++++.+|||||++|+.++||+ . ..++++.
T Consensus 175 ~~~~ngi~g~fAdQFeN~AN~~----aH----yetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~l 246 (391)
T KOG1481|consen 175 PNASNGIRGWFADQFENVANWL----AH----YETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFL 246 (391)
T ss_pred ccccCCcccchhhhhcCHHHHH----HH----hcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEE
Confidence 22 235568998877663 22 34566999999999999999999999999999999985 3 4488999
Q ss_pred eecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHH
Q 022573 157 VEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQ 236 (295)
Q Consensus 157 ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~ 236 (295)
++|.++.+ +.....|..- .+.+..-..+....+||.+|++...+.-.+ .+...++|+.+.|+|+++++
T Consensus 247 aDPpGSGl-----YnkV~~GVmy------~~~e~eG~r~r~q~dti~EGIGinRiT~Nf-~m~~~liD~a~rv~Deqai~ 314 (391)
T KOG1481|consen 247 ADPPGSGL-----YNKVNYGVMY------DHIETEGTRRRNQVDTITEGIGINRITGNF-QMAEDLIDDAMRVTDEQAIN 314 (391)
T ss_pred eCCCCCch-----hhhhhhhhhh------hhhhhcCcccCCCcchhhhccccccccccc-ccchhhhhhheecChHHHHH
Confidence 99999853 2222222211 010111111233457888888765555443 24456789999999999999
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHH
Q 022573 237 AYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 290 (295)
Q Consensus 237 a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~ 290 (295)
+.+.|....|++++.|++.+..|+.++++.++++.+||.++||.|.++++.+.+
T Consensus 315 Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~LgpG~~iVtilCDsG~rh~sk~~~ 368 (391)
T KOG1481|consen 315 MSRYLLDNDGLFVGSSSALNCVAAVRVAKTLGPGHTIVTILCDSGSRHLSKLFS 368 (391)
T ss_pred HHHHhhhcCceEecchhhHHHHHHHHHHHhcCCCceEEEEEeCCcchHHHHhcC
Confidence 999999999999999999999999999999999999999999999999988764
No 78
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=2.6e-33 Score=243.62 Aligned_cols=199 Identities=37% Similarity=0.521 Sum_probs=162.5
Q ss_pred ccccC--CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHH
Q 022573 3 AKRMG--RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWV 80 (295)
Q Consensus 3 a~~~~--~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~ 80 (295)
+++.+ +..+|+++|+||+|.|+|++|+++|++|++|+|.+.+ +.|+++++.+||+|+.++++++++...+ ++++
T Consensus 42 a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~---~~~~~~~~~~Ga~v~~~~~~~~~~~~~a-~~~~ 117 (244)
T cd00640 42 AEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGAS---PEKVAQMRALGAEVVLVPGDFDDAIALA-KELA 117 (244)
T ss_pred HHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHCCCEEEEECCCHHHHHHHH-HHHH
Confidence 34455 2455666788999999999999999999999999753 4688899999999999999988887555 5566
Q ss_pred hccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCC-CCCEEEEecCCchhHHHhhhhhhc-CCCceEEEee
Q 022573 81 GNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG-KPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVE 158 (295)
Q Consensus 81 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~-~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ve 158 (295)
++.++.+| .+++. ||. .+.||.+++.|+. +|++. .||+||+|+|+||+++|++.+|+. .|.+|||+|+
T Consensus 118 ~~~~~~~~-~~~~~--n~~---~~~g~~~~~~Ei~----~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~ 187 (244)
T cd00640 118 EEDPGAYY-VNQFD--NPA---NIAGQGTIGLEIL----EQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVE 187 (244)
T ss_pred HhCCCCEe-cCCCC--CHH---HHHHHHHHHHHHH----HHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEe
Confidence 65434444 45542 333 3578866666655 55554 699999999999999999999985 7899999996
Q ss_pred cCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHH
Q 022573 159 AAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAY 238 (295)
Q Consensus 159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~ 238 (295)
| +++.|+|+|+++++
T Consensus 188 ~-----------------------------------------------------------------~~~~v~d~~~~~a~ 202 (244)
T cd00640 188 P-----------------------------------------------------------------EVVTVSDEEALEAI 202 (244)
T ss_pred e-----------------------------------------------------------------eEEEECHHHHHHHH
Confidence 4 36899999999999
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCC
Q 022573 239 QRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGG 280 (295)
Q Consensus 239 ~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~ 280 (295)
++|++++|++++|++|++++++.++.++.+++++||+++||+
T Consensus 203 ~~l~~~~gi~~~pssa~~~aa~~~~~~~~~~~~~vv~v~tg~ 244 (244)
T cd00640 203 RLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG 244 (244)
T ss_pred HHHHHHcCceECHhHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999999999999999999999999988766789999999984
No 79
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=2.1e-33 Score=251.87 Aligned_cols=241 Identities=30% Similarity=0.349 Sum_probs=174.2
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
|++++.+.+|. +|+||||.|+|++|+++|++|++|+|++.+ +.|+++++.+||+|+.++.++++....+. +++++
T Consensus 51 a~~~~~~~vv~-assGN~g~a~A~~a~~~g~~~~i~~p~~~~---~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~-~~~~~ 125 (306)
T PF00291_consen 51 AKEKGGRTVVG-ASSGNHGRALAYAAARLGLKCTIVVPEDVS---PEKLKQMRALGAEVILVPGDVEGAFDDAQ-ELAKE 125 (306)
T ss_dssp HHHTTTSEEEE-ESSSHHHHHHHHHHHHHTCEEEEEEETTSH---HHHHHHHHHTTCEEEEESSTHHHHHHHHH-HHHHH
T ss_pred ccccccceeee-eccCCceehhhhhhhhccccceeeeccccc---cccccceeeecceEEEccccccccccccc-ccccc
Confidence 45567777755 689999999999999999999999999743 36888999999999999886655544443 22221
Q ss_pred c-----CCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCE--EEEecCCchhHHHhhhhhhc--CCCce
Q 022573 83 L-----EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDV--LLACVGSGSNALGLFHEFIN--DEDVR 153 (295)
Q Consensus 83 ~-----~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~--vvv~vG~Gg~~~G~~~~~~~--~~~~~ 153 (295)
. +..+. .+++ .....+.|+.+++.|+.+| ++ .||. ||+|+|+||+++|++.+|+. .|+++
T Consensus 126 ~~~~~~~~~~~-~~~~-----~~~~~~~g~~~~~~Ei~~q----~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~~~~~ 194 (306)
T PF00291_consen 126 RAELLSPFNGE-LNQY-----NNPNVIAGYATIGLEIYEQ----LG-KPDPDYVVVPVGTGGTAAGIAAGLKELILPPVR 194 (306)
T ss_dssp HHHHHHHSTTE-ESTT-----TSHHHHHHHHHHHHHHHHH----HT-TESESEEEEEESSSHHHHHHHHHHHHHCHTTSE
T ss_pred ccccccccccc-cCcc-----cchhhhhhhhhcchhcccc----cc-cccceEEEecCCchhHHHHHHhhhhhhhccccc
Confidence 0 00011 2221 1223567887777766644 44 4555 99999999999999999976 58999
Q ss_pred EEEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCC--CCchhHHHhhcCCceEEEeCH
Q 022573 154 LIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPG--VGPEISFLRDTGRAEFYTATD 231 (295)
Q Consensus 154 vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~--~~~~~~~~~~~~~~~~~~V~d 231 (295)
+|+|++.+++ .+..++..|.....+ ..++++ ||..+. .+.....+.+.+.+.++.|+|
T Consensus 195 vigv~~~~~~----~~~~~~~~g~~~~~~---------------~~~~~~-gl~~~~~~~~~~~~~~~~~~~~~~~~v~d 254 (306)
T PF00291_consen 195 VIGVEPEGSD----PLYRSFKAGKPIRLP---------------GESTIA-GLGVPMPFPGELDLELIDEYVGDVVGVSD 254 (306)
T ss_dssp EEEEEETTGH----HHHHHHHHTSCEHSS---------------CHHSST-GGTSSSCTTTTHHHHHHHHETEEEEEEEH
T ss_pred ceeeeccCCc----ccccccccccccccc---------------ceeeee-cccCCccchhhhhhhhhhhccccccccch
Confidence 9999998874 456666666543211 112333 776544 232234455566778899999
Q ss_pred HHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC----CCCCeEEEEecC
Q 022573 232 QEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTL----PNGAKVVVNCSG 279 (295)
Q Consensus 232 ~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~----~~~~~vv~v~tg 279 (295)
+|+.+++++|++++|++++|++++++++++++.++. +++++||+|+||
T Consensus 255 ~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 255 EEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp HHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred HHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 999999999999999999999999999999987653 578999999996
No 80
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3e-32 Score=246.31 Aligned_cols=243 Identities=21% Similarity=0.276 Sum_probs=160.9
Q ss_pred ccccCCcEEEE-eCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--chh--HHHHHHHH
Q 022573 3 AKRMGRKSIVA-ATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFK--EASSEAIR 77 (295)
Q Consensus 3 a~~~~~~~~V~-~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~~~--~~~~~~~~ 77 (295)
|++.|++++|+ ++|+||||+|+|++|+++|++|++|||...+. +.|..+++.+||+++.++. +++ +...+..+
T Consensus 65 a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~ 142 (329)
T PRK14045 65 ALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEEL--KGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAE 142 (329)
T ss_pred HHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCC--CcCHHHHHHCCCEEEEECCCcccchHHHHHHHHH
Confidence 45678877775 67889999999999999999999999975332 3466678999999998874 221 11222233
Q ss_pred HHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEE
Q 022573 78 NWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIG 156 (295)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ 156 (295)
++.++..+.|++++++. ||.. ..||.+...|+.+|+. +.+.++|+||+|+|||||++|++.+++. .|++|||+
T Consensus 143 ~l~~~~~~~~~~p~~~~--n~~~---~~g~~~~~~EI~~q~~-~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVig 216 (329)
T PRK14045 143 ELKGEGRKPYIIPPGGA--SPVG---TLGYVRAVGEIATQVK-KLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVG 216 (329)
T ss_pred HHHhcCCCEEEECCCCC--chhH---HHHHHHHHHHHHHHHH-hcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEE
Confidence 44544334566777754 4432 2344333335554442 1224799999999999999999999974 89999999
Q ss_pred eecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHH
Q 022573 157 VEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQ 236 (295)
Q Consensus 157 ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~ 236 (295)
|+|.+.. ..+.+.... . ....+.+. |+... .. ....++.. .|++..++ +|+++
T Consensus 217 v~~~~~~-------~~~~~~~~~-~--------------~~~~~~~~-g~~~~-~~-~~~~~d~~-~~~y~~~~-~e~~~ 269 (329)
T PRK14045 217 IAVGSFG-------EKMKEKVKN-L--------------VKKTKELL-GVKVK-VQ-EPELYDYS-FGEYGKIT-KEVAK 269 (329)
T ss_pred EEecCCH-------HHHHHHHHH-H--------------HHHHHHHh-CCCCC-cc-ceEecccc-cCCCCCCC-HHHHH
Confidence 9997632 111110000 0 00001110 11100 00 01112333 35544555 89999
Q ss_pred HHHHHHHHhCCCCCc-chhhHHHHHHHhcCCCCCCCeEEEEecCC
Q 022573 237 AYQRLCRLEGIFPAL-EASHALAFLEKLCPTLPNGAKVVVNCSGG 280 (295)
Q Consensus 237 a~~~l~~~~gi~~~~-ssa~a~aa~~~~~~~~~~~~~vv~v~tg~ 280 (295)
+++.|++++||+.+| |||++++++++++++.+.+++||+|||||
T Consensus 270 ~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~~~~~iv~ihtGG 314 (329)
T PRK14045 270 LIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGELGEKILFIHTGG 314 (329)
T ss_pred HHHHHHHhhCCCCccchHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 999999999999998 99999999999998755578999999986
No 81
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.98 E-value=2.3e-31 Score=242.50 Aligned_cols=250 Identities=26% Similarity=0.323 Sum_probs=191.5
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+++.+..+ |+++||||+|.|+|+++++.|++|.|++|.+... ..|+.++..+||+++.++++|+++.+.. +++.++
T Consensus 121 ~~~~g~~~-I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs--~~k~~q~~~~ga~~i~v~G~fDda~~~v-k~~~~~ 196 (411)
T COG0498 121 AKELGAKT-ILCASSGNTGASAAAYAARAGLKVFVLYPKGKVS--PGKLAQMLTLGAHVIAVDGNFDDAQELV-KEAANR 196 (411)
T ss_pred HHHhcCCE-EEEeCCchHHHHHHHHhccCCCeEEEEecCCCCC--HHHHHHHHhcCCEEEEEcCcHHHHHHHH-HHHHhh
Confidence 34445444 4457899999999999999999999999997332 3678899999999999999999988544 566664
Q ss_pred cCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-------CCCceEE
Q 022573 83 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRLI 155 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-------~~~~~vi 155 (295)
. +.++..|+. ||++ ++|+.|+++|++.|+.. ..||+|+||+|+||.+.|++.+|++ ...++..
T Consensus 197 ~-~~~~~~nsi---Np~r---legq~t~~fe~~~ql~~---~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~ 266 (411)
T COG0498 197 E-GLLSAVNSI---NPYR---LEGQKTYAFEIAEQLGW---KAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMN 266 (411)
T ss_pred C-Cceeecccc---CHHH---hhhhhhhHhHHHHHhCC---CCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhh
Confidence 2 235544443 7876 57999999888765532 5799999999999999999999985 2346778
Q ss_pred EeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCch--h-HHHhhcCCceEEEeCHH
Q 022573 156 GVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPE--I-SFLRDTGRAEFYTATDQ 232 (295)
Q Consensus 156 ~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~--~-~~~~~~~~~~~~~V~d~ 232 (295)
+|+++++.+. ...+..++ ..+.|++++|........ . ..+..+ .+....|||+
T Consensus 267 ~vqaeg~~p~----~~~~~~~~-------------------~~~~T~a~am~I~~p~n~~r~l~a~~es-~g~~~~vsde 322 (411)
T COG0498 267 GVQAEGFSPG----VYAWKEGR-------------------ETPETIAPAMDIGNPSNWERALFALRES-GGLAVAVSDE 322 (411)
T ss_pred hhhHhhccch----hhhccccc-------------------ccccccccccccCCCCCHHHHHHHHHhc-CCceEEeCHH
Confidence 8888886431 11221111 146788888875433321 1 334454 3468999999
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC-CCCCCeEEEEecCCCcCChHHHHH
Q 022573 233 EAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT-LPNGAKVVVNCSGGGDKDVDTVVN 290 (295)
Q Consensus 233 e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~-~~~~~~vv~v~tg~g~~~~~~~~~ 290 (295)
|++++++++++++|++++|+||+++++++++.++ +++++++|++.||++.|+.+++..
T Consensus 323 Ei~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~v~~ 381 (411)
T COG0498 323 EILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDTVEE 381 (411)
T ss_pred HHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhHHHh
Confidence 9999999999999999999999999999999864 567899999999999999998654
No 82
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.95 E-value=3.5e-26 Score=196.86 Aligned_cols=277 Identities=34% Similarity=0.428 Sum_probs=209.4
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchh------------
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK------------ 69 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~------------ 69 (295)
.|++.|...++++.++|++|.|++.+|+.+|++|+|||-..+-..+..++-+|+.|||+|+-.+++..
T Consensus 121 yak~eg~~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~ 200 (432)
T COG1350 121 YAKKEGAKRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPD 200 (432)
T ss_pred HHHhcCceeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCC
Confidence 46788999999998889999999999999999999999985322234566699999999998877432
Q ss_pred ------HHHHHHHHHHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhh
Q 022573 70 ------EASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLF 143 (295)
Q Consensus 70 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~ 143 (295)
-++.++++...++. +.-|.+.+..| .+.-++..++.|.-.|+ ++.+..||.+|.+||+|++++|+.
T Consensus 201 hPGSLGIAISEAiE~al~~~-~~kY~lGSVln------hvllhQTViGlEakkQl-e~~~e~PDv~igcvGGGSNfag~~ 272 (432)
T COG1350 201 HPGSLGIAISEAIEYALKNE-NTKYSLGSVLN------HVLLHQTVIGLEAKKQL-EQAGEDPDVIIGCVGGGSNFAGLT 272 (432)
T ss_pred CCchhHHHHHHHHHHHHhCC-CceecchhHHH------HHHHHHHHHhHHHHHHH-HhcCCCCCEEEEeccCCCcccccc
Confidence 23445555555543 45666544321 24567888899998887 778889999999999999999997
Q ss_pred hhhh---c--CCCceEEEeecCCCCCCccchhhhhccCceeeeec----cccccccccccc-ccccccccccCCCCCCCc
Q 022573 144 HEFI---N--DEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHG----AMSYLLQDEEGQ-ILGTHSVGVGLEYPGVGP 213 (295)
Q Consensus 144 ~~~~---~--~~~~~vi~ve~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~-~~~~~~i~~gl~~~~~~~ 213 (295)
--|. . ....++|+|+|..++ ++.+|+..---+ ....+.+...++ ...|.-.+.||++.+..+
T Consensus 273 yPfi~d~l~g~~~~~fiAvep~a~P--------~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aP 344 (432)
T COG1350 273 YPFIGDKLRGKKETRFIAVEPKACP--------KLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAP 344 (432)
T ss_pred chhhhhhhcCCceeEEEEeCCccCC--------ccccceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcCh
Confidence 6653 1 334899999999975 455554321111 111112222332 234555678999999988
Q ss_pred hhHHHhhcCCceEEEeCHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCC---CCCeEEEEecCCCcCChHHHHH
Q 022573 214 EISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLP---NGAKVVVNCSGGGDKDVDTVVN 290 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~---~~~~vv~v~tg~g~~~~~~~~~ 290 (295)
.+..+....+.+....+.+|+.++.+.|++.|||...|.|+.|+.++.+.+.+.+ ..++|+|-++|||..|++.|.+
T Consensus 345 tls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~~ 424 (432)
T COG1350 345 TLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYDK 424 (432)
T ss_pred HHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccchhhHHH
Confidence 8877777777789999999999999999999999999999999999998875432 3357889999999999999999
Q ss_pred hHhh
Q 022573 291 YRYN 294 (295)
Q Consensus 291 ~~~~ 294 (295)
++..
T Consensus 425 yl~g 428 (432)
T COG1350 425 YLEG 428 (432)
T ss_pred Hhhh
Confidence 8753
No 83
>PRK09225 threonine synthase; Validated
Probab=99.95 E-value=5.4e-26 Score=211.73 Aligned_cols=251 Identities=14% Similarity=0.057 Sum_probs=182.6
Q ss_pred CCcEEEEeCCCChHHHHH-HHHHHHcCCceEEEeeCC-CcccchhhHHHHHHc-CCEE--EEecCchhHHHHHHHHHHHh
Q 022573 7 GRKSIVAATGAGQHGVAT-AAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLL-GAQV--KAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~-A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~l~~~-GA~v--~~~~~~~~~~~~~~~~~~~~ 81 (295)
+....|+++||||+|.|+ +.++.+.|++|+|++|++ .+ ..+.++|..+ |++| +.++++|+++.... +++..
T Consensus 129 ~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs---~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~v-k~~~~ 204 (462)
T PRK09225 129 GEKITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVS---PVQEKQMTTLQGDNIHVVAVEGNFDDCQALV-KAAFN 204 (462)
T ss_pred CCCcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC---HHHHHHHHhhcCCCeEEEEeCCCHHHHHHHH-HHHhh
Confidence 434455557999999999 799999999999999986 33 2456788888 9977 89999999987544 33332
Q ss_pred c-c---CCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEE
Q 022573 82 N-L---EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIG 156 (295)
Q Consensus 82 ~-~---~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ 156 (295)
+ . ...++..|+. ||++ +.|+.+.++|+..|+.... ..||.||||+|+||.+.|.+.+.+. .|.+|+|+
T Consensus 205 d~~~~~~~~l~saNSi---N~~R---i~gQ~~yyfea~~ql~~~~-~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~ 277 (462)
T PRK09225 205 DEELKEKLKLSSANSI---NIGR---LLAQIVYYFYAYLQLGIEA-GEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIV 277 (462)
T ss_pred chhhhhcCceEEEecc---CHHH---HHHHHHHHHHHHHHhcccc-CCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEE
Confidence 2 0 1245555553 7776 5799999999987764322 3599999999999999999988554 56679999
Q ss_pred eecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHH----------------Hhh
Q 022573 157 VEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISF----------------LRD 220 (295)
Q Consensus 157 ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~----------------~~~ 220 (295)
++-.+ +.+.+.+..|.... ...++|++.+|.+.... .+.. ++.
T Consensus 278 A~n~n-----~~l~~~~~~G~y~~---------------~~~~~T~s~amdI~~ps-n~eR~l~~~~~~~~~~v~~~m~~ 336 (462)
T PRK09225 278 ATNEN-----DVLTRFLKTGVYDP---------------RPTVATLSPAMDISVSS-NFERLLFDLLGRDAAAVEELMED 336 (462)
T ss_pred EecCC-----hHHHHHHHcCCCcc---------------CCCCCCcCchhhcCCCC-cHHHHHHHhcCCcHHHHHHHHHH
Confidence 97332 23455566665321 11356777777653222 2222 111
Q ss_pred --cCCc---------------eEEEeCHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcC
Q 022573 221 --TGRA---------------EFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDK 283 (295)
Q Consensus 221 --~~~~---------------~~~~V~d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~ 283 (295)
.... ..+.|+|+|++++++++++++|++++|+||++++++.++. .++.++|++.|+++.|
T Consensus 337 l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~---~~~~~~V~l~Ta~p~K 413 (462)
T PRK09225 337 LEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYL---DPGEPGVVLSTAHPAK 413 (462)
T ss_pred HHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHhh---CCCCCEEEEecCCccC
Confidence 1111 5689999999999999999999999999999999998873 4677999999999999
Q ss_pred ChHHHHHhH
Q 022573 284 DVDTVVNYR 292 (295)
Q Consensus 284 ~~~~~~~~~ 292 (295)
+.+.+.+.+
T Consensus 414 f~~~v~~a~ 422 (462)
T PRK09225 414 FPEVVEEAL 422 (462)
T ss_pred CHHHHHHhc
Confidence 999988664
No 84
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.94 E-value=4.1e-26 Score=195.61 Aligned_cols=244 Identities=27% Similarity=0.350 Sum_probs=180.8
Q ss_pred cccccCCcEEEEeCCC-ChHHHHHHHHHHHcCCceEEEeeCCC-cccchhhHHHHHHcCCEEEEecCchhH----HHHHH
Q 022573 2 IAKRMGRKSIVAATGA-GQHGVATAAACAKLALDCTVFMGTAD-MEKQSSKVLLMKLLGAQVKAVDGCFKE----ASSEA 75 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ss-GN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~l~~~GA~v~~~~~~~~~----~~~~~ 75 (295)
.|+++|++++|+.++. .||.+++|++|+++|++|+.++.... .....+|+.+.+.+|++++.++...+. .....
T Consensus 58 eal~~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~ 137 (323)
T COG2515 58 EALRKGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEEL 137 (323)
T ss_pred hhhhcCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHH
Confidence 4788999999997655 89999999999999999999998743 223457888999999999999984432 33344
Q ss_pred HHHHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceE
Q 022573 76 IRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRL 154 (295)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~v 154 (295)
.+++.++..++|.||.+. .||++.+ |+...+.|+..|. +|+ .++|.||+++|||||.+|+..++.. .++.+|
T Consensus 138 ~e~~~~~g~kpyvIp~GG--~~~~g~l---Gyv~~a~Ei~~Q~-~~~-~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~V 210 (323)
T COG2515 138 AEEVRKQGGKPYVIPEGG--SSPLGAL---GYVRLALEIAEQA-EQL-LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEV 210 (323)
T ss_pred HHHHHhcCCCCcEeccCC--cCccccc---cHHHHHHHHHHHH-hhc-cCCCEEEEeCCCcchHHHHHHHhhhccCCCce
Confidence 455566666788888664 4777643 5555566666654 334 6899999999999999999999964 799999
Q ss_pred EEeecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchh-HHHhhcCCceEEEeCHHH
Q 022573 155 IGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEI-SFLRDTGRAEFYTATDQE 233 (295)
Q Consensus 155 i~ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~-~~~~~~~~~~~~~V~d~e 233 (295)
|++...... ..++.+... -..+.+.-++ .+... ..+..+|....|+++.+|
T Consensus 211 iG~~v~~~~-------~~~~~qv~~------------------L~~~~a~~~~---~~~~~~v~~~~dy~~~~Yg~p~~e 262 (323)
T COG2515 211 IGIDVSADP-------EKLKEQVLN------------------LAQATAELLG---LGSEADVLLSDDYHHPGYGKPNEE 262 (323)
T ss_pred EEEeecCCH-------HHHHHHHHH------------------HHHHHHHHcC---CCCCceEEEEecccCCccCCcCHH
Confidence 999988863 112111110 0111111111 11111 124455666789999999
Q ss_pred HHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcC--CCCCCCeEEEEecCC
Q 022573 234 AVQAYQRLCRLEGIF-PALEASHALAFLEKLCP--TLPNGAKVVVNCSGG 280 (295)
Q Consensus 234 ~~~a~~~l~~~~gi~-~~~ssa~a~aa~~~~~~--~~~~~~~vv~v~tg~ 280 (295)
-+++++.+++.|||. ++.|+++++.++++.++ +++.+.+||++||||
T Consensus 263 ~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG 312 (323)
T COG2515 263 DIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGG 312 (323)
T ss_pred HHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCC
Confidence 999999999999999 99999999999999986 477788899999986
No 85
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.94 E-value=4.5e-25 Score=205.69 Aligned_cols=254 Identities=15% Similarity=0.074 Sum_probs=184.7
Q ss_pred CCcEEEEeCCCChHHHH-HHHHHHHcCCceEEEeeCC-CcccchhhHHHHHHcCC---EEEEecCchhHHHHHHHHHHHh
Q 022573 7 GRKSIVAATGAGQHGVA-TAAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLLGA---QVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a-~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~l~~~GA---~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
+...+++ +||||+|.| ++.++.+.|++|+|++|++ .+ ..+.++|..+|+ +++.++++|+++.... +++.+
T Consensus 131 ~~~~Il~-ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs---~~Q~~Qm~t~g~~Nv~vi~V~G~fDd~q~~v-k~~~~ 205 (460)
T cd01560 131 ERITILV-ATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVS---PIQELQMTTLPADNVHVVAVEGDFDDCQSLV-KALFA 205 (460)
T ss_pred CCeEEEE-cCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC---HHHHHHHHhhCCCceEEEEEcCCHHHHHHHH-HHHhc
Confidence 4555554 789999999 5899999999999999996 33 356779999997 8999999999987544 34332
Q ss_pred cc----CCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEE
Q 022573 82 NL----EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIG 156 (295)
Q Consensus 82 ~~----~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~ 156 (295)
+. ...++..|+. ||++ +.++.+.++|+..|+..+....|+.|+||+|+||.+.|.+.+.+. .|.+|+|+
T Consensus 206 d~~~~~~~~l~saNSi---N~~R---i~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~ 279 (460)
T cd01560 206 DEDFNKKLKLSSANSI---NWAR---ILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIV 279 (460)
T ss_pred ChhhHhcceEEEEecc---CHHH---HHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEE
Confidence 20 1235555543 6766 578999999998776432113689999999999999999998765 56679999
Q ss_pred eecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHH----HhhcCC---------
Q 022573 157 VEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISF----LRDTGR--------- 223 (295)
Q Consensus 157 ve~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~----~~~~~~--------- 223 (295)
++..+. .+.+.+..|..... ...+.|++.+|.+.... .+.. +..+..
T Consensus 280 a~n~n~-----il~~~~~~G~y~~~--------------~~~~~T~spamdI~~ps-n~eR~L~~l~~~~g~~~~~~m~~ 339 (460)
T cd01560 280 ATNEND-----VLRRFFKTGRYDRR--------------ESLKQTLSPAMDILKSS-NFERLLFLLAGRDRTKVKMLMEE 339 (460)
T ss_pred EeCCCh-----HHHHHHHcCCCcCC--------------CCCCCCcCchhhcCCCC-CHHHHHHHHhCCCHHHHHHHHHH
Confidence 755442 23445555543210 02356777777754333 2222 111111
Q ss_pred --------------------ceEEEeCHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcC
Q 022573 224 --------------------AEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDK 283 (295)
Q Consensus 224 --------------------~~~~~V~d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~ 283 (295)
-..+.|+|+|++++++++++++|++++|+||++++++.++.++ ++.++|++.|+++.|
T Consensus 340 ~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~--~~~~~V~l~Ta~p~K 417 (460)
T cd01560 340 FEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS--PGTPGVVLSTAHPAK 417 (460)
T ss_pred HHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc--cCCCEEEEecCCccc
Confidence 1468999999999999999999999999999999999987754 567899999999999
Q ss_pred ChHHHHHhHh
Q 022573 284 DVDTVVNYRY 293 (295)
Q Consensus 284 ~~~~~~~~~~ 293 (295)
+.+.+...+.
T Consensus 418 f~~~v~~a~~ 427 (460)
T cd01560 418 FPEAVKEALG 427 (460)
T ss_pred CHHHHHHhhC
Confidence 9999887653
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.88 E-value=3.2e-21 Score=164.97 Aligned_cols=261 Identities=17% Similarity=0.166 Sum_probs=196.5
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeee
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLT 90 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (295)
-|..+|+||.|.++...++.+|++++|.|..+. ++.|.+.++..|.+|+..+.+|..++++- ++.++.++..||+.
T Consensus 162 sIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADA---r~WKKd~LRs~gV~ViEYe~DY~~AVeeG-Rk~a~~DP~c~FiD 237 (443)
T COG3048 162 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADA---RAWKKDKLRSHGVTVVEYEQDYGVAVEEG-RKEAESDPNCFFID 237 (443)
T ss_pred eEeecccCccceehhhhhhhhcceEEEEecchH---HHHHHHHHHhcCceEEEecchhhHHHHHh-hhhhccCCceEEec
Confidence 345578999999999999999999999997654 36899999999999999999999888776 34566778888885
Q ss_pred CcccCCCCCchhhhhhhhhhhHHHHHHHHHHh----CCCCCEEEEecCCchhHHHhhhhhhc--CCCceEEEeecCCCCC
Q 022573 91 GTVVGPHPCPIMVREFQSIIGKETRKQAMEKW----GGKPDVLLACVGSGSNALGLFHEFIN--DEDVRLIGVEAAGFGL 164 (295)
Q Consensus 91 ~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~----~~~~d~vvv~vG~Gg~~~G~~~~~~~--~~~~~vi~ve~~~~~~ 164 (295)
+- |.-. ..-||..++..+-.|+.+|- ...|-.|.+|+|.||.-.|++.++|. +.+++++-+||..++
T Consensus 238 DE----~S~~--LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsP- 310 (443)
T COG3048 238 DE----NSRT--LFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP- 310 (443)
T ss_pred cc----chhh--hhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCCh-
Confidence 31 2222 12578777877777765441 13577899999999999999999985 889999999999986
Q ss_pred CccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHHHHHHHH
Q 022573 165 DSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244 (295)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 244 (295)
||-.-+..|...... ..+.+ ....|-+|||.+....-.+....+...++.|+|+|+..+...++|++.
T Consensus 311 ---cMlLGv~tGlHe~IS-------VqdiG--idn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~ 378 (443)
T COG3048 311 ---CMLLGVYTGLHEQIS-------VQDIG--IDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQE 378 (443)
T ss_pred ---HHHHhhhhcccccee-------eEeec--ccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHh
Confidence 333333333322110 00000 113466888886444433455667778899999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhcCC---------C----CCCCeEEEEecCCCcCChHHHHHhHhh
Q 022573 245 EGIFPALEASHALAFLEKLCPT---------L----PNGAKVVVNCSGGGDKDVDTVVNYRYN 294 (295)
Q Consensus 245 ~gi~~~~ssa~a~aa~~~~~~~---------~----~~~~~vv~v~tg~g~~~~~~~~~~~~~ 294 (295)
+|+..+||+-+++++-.++.+. + -.+.+-|+|.|||+++..+++..++.+
T Consensus 379 e~~rlEPSalAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~MVPeeeM~~yl~~ 441 (443)
T COG3048 379 EGIRLEPSALAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGMVPEEEMEAYLAK 441 (443)
T ss_pred cCcccCchhhhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCcCCHHHHHHHHhc
Confidence 9999999998888887666531 1 134678999999999999999988764
No 87
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=93.09 E-value=0.2 Score=42.16 Aligned_cols=74 Identities=8% Similarity=0.018 Sum_probs=59.6
Q ss_pred HHHhhcCCceEEEeCHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHh
Q 022573 216 SFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291 (295)
Q Consensus 216 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~ 291 (295)
..+.+++. ...||++|..+++...++..+...+|.+|.++-...+...+..++-+++++.|.+..|+.+.+-..
T Consensus 140 ekls~dft--se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~ps~~~i~lstAh~aKFa~AV~~A 213 (266)
T KOG2616|consen 140 EKLSEDFT--SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQPSIPYICLSTAHPAKFAEAVNAA 213 (266)
T ss_pred HHHHHhhh--hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccCCCCceEEecccChhhhhHHHHHH
Confidence 33444444 468999999999999999999999999999998888887765566788999999988877766544
No 88
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.07 E-value=2 Score=36.44 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=39.6
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
+|+ +.+|+.|..++.+....+.++++++.+.+. ...+.++..|++++..+-+
T Consensus 2 ~V~-GatG~~G~~v~~~L~~~~~~V~~l~R~~~~----~~~~~l~~~g~~vv~~d~~ 53 (233)
T PF05368_consen 2 LVT-GATGNQGRSVVRALLSAGFSVRALVRDPSS----DRAQQLQALGAEVVEADYD 53 (233)
T ss_dssp EEE-TTTSHHHHHHHHHHHHTTGCEEEEESSSHH----HHHHHHHHTTTEEEES-TT
T ss_pred EEE-CCccHHHHHHHHHHHhCCCCcEEEEeccch----hhhhhhhcccceEeecccC
Confidence 344 668999999999999999999999976422 2345788899999855543
No 89
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=83.34 E-value=15 Score=29.82 Aligned_cols=122 Identities=16% Similarity=0.034 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeeeCcccCCCCC
Q 022573 20 HGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPC 99 (295)
Q Consensus 20 ~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 99 (295)
-|..+.++++.+|.+..--++..+ .-..-.+.+...+-+|..++++. +..+++.+.+.++.++ .-+.... ++|
T Consensus 10 DG~~l~~~~~~~~~~~~~r~~g~d--l~~~ll~~~~~~~~~v~llG~~~-~~~~~~~~~l~~~yp~-l~i~g~~---~g~ 82 (171)
T cd06533 10 DGIGVVWAARLLGGPLPERVTGSD--LMPALLELAAQKGLRVFLLGAKP-EVLEKAAERLRARYPG-LKIVGYH---HGY 82 (171)
T ss_pred CcHHHHHHHHHcCCCCCcccCcHH--HHHHHHHHHHHcCCeEEEECCCH-HHHHHHHHHHHHHCCC-cEEEEec---CCC
Confidence 367889999999998433343322 11223445566689999999864 4455555556665543 3332211 443
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEe
Q 022573 100 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGV 157 (295)
Q Consensus 100 ~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~v 157 (295)
... ..-.++..+|.+ ..||.|+++.|+---=.=+.......+..-+++|
T Consensus 83 ~~~------~~~~~i~~~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 83 FGP------EEEEEIIERINA---SGADILFVGLGAPKQELWIARHKDRLPVPVAIGV 131 (171)
T ss_pred CCh------hhHHHHHHHHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEe
Confidence 211 001234455533 4699999999886654222222222444445555
No 90
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=82.48 E-value=19 Score=29.22 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeeeCcccCCCCC
Q 022573 20 HGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPC 99 (295)
Q Consensus 20 ~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 99 (295)
-|..+..+++.+|.++.--++.. +....-.+.+...|-+|..++++. +..+++.+.+.++.++ .-+...+ +++
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~--dl~~~l~~~~~~~~~~ifllG~~~-~~~~~~~~~l~~~yP~-l~ivg~~---~g~ 84 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGS--DLFPDLLRRAEQRGKRIFLLGGSE-EVLEKAAANLRRRYPG-LRIVGYH---HGY 84 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHH--HHHHHHHHHHHHcCCeEEEEeCCH-HHHHHHHHHHHHHCCC-eEEEEec---CCC
Confidence 36789999999998884333321 111223446667788999999964 4455665666666543 2222111 333
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhH
Q 022573 100 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 139 (295)
Q Consensus 100 ~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~ 139 (295)
.. ..-..++..+|.+ ..||.|++..|+----
T Consensus 85 f~------~~~~~~i~~~I~~---~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 85 FD------EEEEEAIINRINA---SGPDIVFVGLGAPKQE 115 (172)
T ss_pred CC------hhhHHHHHHHHHH---cCCCEEEEECCCCHHH
Confidence 21 1113455555533 4699999999987654
No 91
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.27 E-value=19 Score=28.27 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=46.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC-CcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
++++.++++.-|+++|..-.+.|-..++++..+ ..+..+..++.++..|.++..+.-+. .+...+++++..+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIK 76 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 455657778999999999999877666666654 12222334456677889887776532 3344455554443
No 92
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=80.90 E-value=12 Score=25.95 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCC
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
++|..|.-+|...+.+|.+++++.+..
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 579999999999999999999998774
No 93
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=79.48 E-value=9.1 Score=34.14 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=39.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC-cc--cchhhHHHHHHcCCEEEEecC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTAD-ME--KQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~-~~--~~~~~~~~l~~~GA~v~~~~~ 66 (295)
.++..+-+.|-+.|+-.+|+++|+.+++..|++. +. ....-.+..+..|+++.++.+
T Consensus 155 k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 155 KLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred EEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 3444444467999999999999999999999962 22 111111133556999998877
No 94
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=77.25 E-value=34 Score=28.05 Aligned_cols=100 Identities=6% Similarity=-0.058 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeeeCcccCCCCCc
Q 022573 21 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCP 100 (295)
Q Consensus 21 g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 100 (295)
|..+.++++.+|.+..--++. .+.-..-.+.....|..|..+++.. +..+++.+.+.++.++ .-+. +. ++|.
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G--~dl~~~l~~~~~~~~~~vfllG~~~-~v~~~~~~~l~~~yP~-l~i~-g~---~g~f 84 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAG--PDLMEELCQRAGKEKLPIFLYGGKP-DVLQQLKVKLIKEYPK-LKIV-GA---FGPL 84 (177)
T ss_pred cHHHHHHHHHcCCCCCCccCh--HHHHHHHHHHHHHcCCeEEEECCCH-HHHHHHHHHHHHHCCC-CEEE-EE---CCCC
Confidence 467899999999764333332 2211223334556788999998864 4555666666666543 2221 11 2221
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCch
Q 022573 101 IMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGS 137 (295)
Q Consensus 101 ~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg 137 (295)
. ..-..+++++|.+ ..||.++|+.|+=-
T Consensus 85 ~------~~~~~~i~~~I~~---s~~dil~VglG~Pk 112 (177)
T TIGR00696 85 E------PEERKAALAKIAR---SGAGIVFVGLGCPK 112 (177)
T ss_pred C------hHHHHHHHHHHHH---cCCCEEEEEcCCcH
Confidence 1 0012345566643 46999999998754
No 95
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.44 E-value=59 Score=29.35 Aligned_cols=72 Identities=21% Similarity=0.142 Sum_probs=44.0
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
.+.+++.+.+|--|.++|......|.+++++... .+..+...+.++..|+++..+..+. .+.+.++.+...+
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~--~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARG--EEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3456665667889999999999999887776543 2222223445667888876655432 2334444444433
No 96
>PRK06139 short chain dehydrogenase; Provisional
Probab=75.27 E-value=39 Score=30.56 Aligned_cols=69 Identities=19% Similarity=0.098 Sum_probs=41.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHH
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNW 79 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~ 79 (295)
+.+++++.+|--|.++|......|.+++++... .+..+.....++..|+++..+..+. .+.+.++.++.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~--~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARD--EEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 455555666789999999999999987665543 2222223345667888876554432 33444444433
No 97
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=75.09 E-value=13 Score=33.25 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHcCCceEEEeeCCC-cccchhhHHHHHHcCCEEEEecC
Q 022573 18 GQHGVATAAACAKLALDCTVFMGTAD-MEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 18 GN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+|.++|+..+++++|+.++++.|++- ++ ...+..++.+|+++..+++
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~--~~~~~~~~~~G~~v~~~~d 209 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRMP--KEILEELKAKGIKVRETES 209 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccCC--HHHHHHHHHcCCEEEEECC
Confidence 58999999999999999999999863 22 2234455667988876655
No 98
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=71.44 E-value=15 Score=29.49 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=38.9
Q ss_pred CcEEEEeCCC-ChHHHHHHHHHHHcCCceEEEeeCC--Ccccch---hhHHHHHHcCCEEEEecC
Q 022573 8 RKSIVAATGA-GQHGVATAAACAKLALDCTVFMGTA--DMEKQS---SKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 8 ~~~~V~~~ss-GN~g~a~A~~a~~~G~~~~vv~p~~--~~~~~~---~~~~~l~~~GA~v~~~~~ 66 (295)
.+..++ +-. +|.+.|++..+.++|..++++.|++ -+.... .-.+..+..|.++..++.
T Consensus 3 l~i~~v-GD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~ 66 (158)
T PF00185_consen 3 LKIAYV-GDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDD 66 (158)
T ss_dssp EEEEEE-SSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESS
T ss_pred CEEEEE-CCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 333444 333 7999999999999999999999986 222100 011244556999988844
No 99
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=68.86 E-value=17 Score=28.95 Aligned_cols=64 Identities=23% Similarity=0.196 Sum_probs=40.3
Q ss_pred cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC------CCcccchhhHHHHHHcCCEEEEecC
Q 022573 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT------ADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~------~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
.|++.+.+.+|+++|+|-++.-+.-+...- +++++|..+ +..+-...-...|+..|++|..-.-
T Consensus 22 rA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 22 RAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred HHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 367888888898888888877665554332 777777654 1111122344577888888865433
No 100
>PRK12743 oxidoreductase; Provisional
Probab=68.69 E-value=45 Score=28.43 Aligned_cols=72 Identities=10% Similarity=0.092 Sum_probs=42.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchh--HHHHHHHHHHHhc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK--EASSEAIRNWVGN 82 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~--~~~~~~~~~~~~~ 82 (295)
++++.+++|.-|.++|......|.+++++....... .+.....++.+|.++.....+.. +....++++..++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG-AKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 455556678899999999999999887765432211 11223456667888766554332 3333444444443
No 101
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=68.64 E-value=35 Score=28.21 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=39.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+=+.|+=.|||-+|.++|-.+...|..++++....+.. . -.|.+++.+.. .+|..+ ++.+..++
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~-------~--p~~~~~i~v~s-a~em~~-~~~~~~~~ 82 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP-------P--PPGVKVIRVES-AEEMLE-AVKELLPS 82 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------------TTEEEEE-SS-HHHHHH-HHHHHGGG
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc-------c--cccceEEEecc-hhhhhh-hhccccCc
Confidence 34567777899999999999999999999998764321 1 24778888887 334443 33344443
No 102
>PRK06182 short chain dehydrogenase; Validated
Probab=68.56 E-value=73 Score=27.41 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=42.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
.+++.+++|--|.++|......|.+++++... . .+++.+...+.+++.++-.-.+....++++..++
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~--~----~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR--V----DKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC--H----HHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 44555667889999999988899887776543 1 1233444557777777664444455555544443
No 103
>PRK05993 short chain dehydrogenase; Provisional
Probab=66.60 E-value=53 Score=28.48 Aligned_cols=66 Identities=14% Similarity=0.029 Sum_probs=41.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
.+++.+++|.-|.++|......|.+++++... + .+...++..|.+++.++-.-.+....++++..+
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~--~----~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK--E----EDVAALEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC--H----HHHHHHHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 34555667889999999988899987776543 2 123345556777776665434444455444433
No 104
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.52 E-value=43 Score=28.54 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=41.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--chhHHHHHHHHHHHhc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVGN 82 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~~~~~~~~~~~~~~~~ 82 (295)
+.++++++++--|.++|....+.|.+++++-.... +...+.++..|.++..+.. .-.+....++++..++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA----PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH----HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 44555566788999999999999999877643211 1123355667877755443 2233444554444433
No 105
>PRK06128 oxidoreductase; Provisional
Probab=65.76 E-value=75 Score=27.96 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=42.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
+.+++++++|--|.++|..-.+.|.++++................++..|.++..+..+. .+...+++++..+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 345555667889999999999999988765433211111223446677788776655433 2333344444433
No 106
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=64.56 E-value=27 Score=33.04 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=36.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC--cccchhhHHHHHHcCCEEEEe
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTAD--MEKQSSKVLLMKLLGAQVKAV 64 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~l~~~GA~v~~~ 64 (295)
.+|+. ++||.|.-+|..++++|.+++++..... .......++.++..|.+++..
T Consensus 274 ~VvVI-GgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 274 SVVVI-GGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred eEEEE-CCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 44443 5899999999999999999999887631 111122234567778887643
No 107
>PRK12828 short chain dehydrogenase; Provisional
Probab=63.61 E-value=85 Score=26.01 Aligned_cols=70 Identities=20% Similarity=0.087 Sum_probs=41.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHH
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWV 80 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~ 80 (295)
+++++.+++|--|.+++....+.|.+++++.....+ .......++..+.+++.++-.-.+....++++..
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP--LSQTLPGVPADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh--HHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHH
Confidence 345555677889999999888889987776653211 1112334555677777666533333444444433
No 108
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=63.36 E-value=8.3 Score=30.77 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++||+|.++|...+..|.+++++.++
T Consensus 6 GaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 6 GAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp SSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred CcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 58999999999999999999888875
No 109
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=63.33 E-value=39 Score=30.75 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=29.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEe
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV 64 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~ 64 (295)
.+++. ++|..|..++..++.+|...++++.. ++ .+++.++.+|++.+..
T Consensus 190 ~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~-~~----~~~~~~~~~Ga~~~i~ 238 (369)
T cd08301 190 TVAIF-GLGAVGLAVAEGARIRGASRIIGVDL-NP----SKFEQAKKFGVTEFVN 238 (369)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC-CH----HHHHHHHHcCCceEEc
Confidence 34443 45888888888888888743333322 11 2455778888865443
No 110
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=63.21 E-value=1.1e+02 Score=28.85 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
..+.+|+ ++|-.|...|+.+++.|+++.++-..
T Consensus 2 ~~DviII--G~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 2 KFDVLVI--GGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCCEEEE--CccHHHHHHHHHHHHCCCcEEEEECC
Confidence 3565555 47999999999999999999998644
No 111
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=62.78 E-value=95 Score=26.29 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=40.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHH
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNW 79 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~ 79 (295)
+.+++.+++|..|.++|......|.+++++-.. .+........++..|.++..+..+. .+...+++++.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRD--PAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHH
Confidence 345555677889999999998899876654332 2211223345566677776654433 23344444433
No 112
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=62.61 E-value=64 Score=25.89 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=37.2
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEec
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 65 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~ 65 (295)
...+..+++. ++||-|...+.++..+|.+.+++ +..+ .+.+.++..++..+.++
T Consensus 17 ~~~p~~vvv~-G~G~vg~gA~~~~~~lGa~v~~~--d~~~----~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 17 GVPPAKVVVT-GAGRVGQGAAEIAKGLGAEVVVP--DERP----ERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EE-T-EEEEE-STSHHHHHHHHHHHHTT-EEEEE--ESSH----HHHHHHHHTTTEESEET
T ss_pred CCCCeEEEEE-CCCHHHHHHHHHHhHCCCEEEec--cCCH----HHHHhhhcccCceEEEc
Confidence 3455666665 58999999999999999875554 4333 34557788999887774
No 113
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=61.20 E-value=1.4e+02 Score=27.78 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=36.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHc--CCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 10 SIVAATGAGQHGVATAAACAKL--ALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~--G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
.+.+.+|+|+-|.+.--+.++. .++++.+.-....++ -.++.+.++.+.+.+..
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~---l~~q~~~f~p~~v~i~~ 58 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVEL---LAEQAREFRPKYVVVAD 58 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHH---HHHHHHHhCCCEEEEcC
Confidence 3445578999999988888776 466666553333332 34578899999887766
No 114
>PRK05693 short chain dehydrogenase; Provisional
Probab=60.32 E-value=1.1e+02 Score=26.28 Aligned_cols=66 Identities=12% Similarity=-0.002 Sum_probs=40.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
.+++.+.+|-.|.+++......|.+++++... . .+...+...+.+.+.++-.-.+...++++...+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~--~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK--A----EDVEALAAAGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC--H----HHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 44555667889999999888899887765533 1 123345556777666665434444455544433
No 115
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=59.89 E-value=81 Score=26.81 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=40.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
+.+++.+++|.-|.++|......|.+++++-.. .. ....+.++..+.++..+..+. .+....++++..+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~-~~---~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINIV-EP---TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecCc-ch---HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 455555777899999999999999987655222 11 122345556676766554432 2334444444433
No 116
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=59.78 E-value=52 Score=26.30 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=34.1
Q ss_pred EEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 12 VAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 12 V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
++.+.+|+.|..++-.....|.++++++.... |.+. ..+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~------~~~~--~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPS------KAED--SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGG------GHHH--CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCch------hccc--ccccccceeee
Confidence 34467899999999999999999999996622 2222 55666665555
No 117
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=59.69 E-value=1.4e+02 Score=27.08 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-C-CCceEEEee
Q 022573 112 KETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-D-EDVRLIGVE 158 (295)
Q Consensus 112 ~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~-~~~~vi~ve 158 (295)
+...+++++.. +++|.||++ +...+.|+.++++. + .+++|+|..
T Consensus 197 ~~~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 197 LQTAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred HHHHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeC
Confidence 34445554443 678999887 33444577778764 2 267788876
No 118
>PRK08017 oxidoreductase; Provisional
Probab=59.16 E-value=93 Score=26.26 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=34.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
.+++.+.+|.-|.+++..-...|.+++++... . .+.+.++..|++.+.++-.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~--~----~~~~~~~~~~~~~~~~D~~ 55 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK--P----DDVARMNSLGFTGILLDLD 55 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC--H----HHhHHHHhCCCeEEEeecC
Confidence 35555667889999999988899887665432 2 2333555678877776653
No 119
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=59.10 E-value=27 Score=29.10 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCC-CCcchhhHHHHHHHhcC-CCCCCCeEEEEecCCCc
Q 022573 236 QAYQRLCRLEGIF-PALEASHALAFLEKLCP-TLPNGAKVVVNCSGGGD 282 (295)
Q Consensus 236 ~a~~~l~~~~gi~-~~~ssa~a~aa~~~~~~-~~~~~~~vv~v~tg~g~ 282 (295)
..++.+....-+- .+..++-++.-+++..+ +.+..++||+++|||.+
T Consensus 75 ~~l~~~l~~~q~g~ag~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n 123 (191)
T cd01455 75 ETLKMMHAHSQFCWSGDHTVEATEFAIKELAAKEDFDEAIVIVLSDANL 123 (191)
T ss_pred HHHHHHHHhcccCccCccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCc
Confidence 3444444433332 66777777766666655 55667899999999654
No 120
>PRK08303 short chain dehydrogenase; Provisional
Probab=59.07 E-value=1.3e+02 Score=26.78 Aligned_cols=74 Identities=15% Similarity=0.040 Sum_probs=41.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC--------cccchhhHHHHHHcCCEEEEecC--chhHHHHHHHHH
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTAD--------MEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRN 78 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~--------~~~~~~~~~~l~~~GA~v~~~~~--~~~~~~~~~~~~ 78 (295)
+.++++++++--|.++|..-...|.+++++..... .+......+.++..|.+++.+.. .-.+....++++
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 44555555666888888888889988777654311 11222233456667877654433 223344455555
Q ss_pred HHhc
Q 022573 79 WVGN 82 (295)
Q Consensus 79 ~~~~ 82 (295)
..++
T Consensus 89 ~~~~ 92 (305)
T PRK08303 89 IDRE 92 (305)
T ss_pred HHHH
Confidence 4443
No 121
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=58.88 E-value=29 Score=26.07 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=16.2
Q ss_pred CCCEEEEecCCchhHHHhhhhh
Q 022573 125 KPDVLLACVGSGSNALGLFHEF 146 (295)
Q Consensus 125 ~~d~vvv~vG~Gg~~~G~~~~~ 146 (295)
.+|.||-++|++.++.-....+
T Consensus 58 ~~d~vid~~g~~~~~~~~~~~l 79 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQEAIKLL 79 (130)
T ss_dssp SEEEEEESSSSHHHHHHHHHHE
T ss_pred cceEEEEecCcHHHHHHHHHHh
Confidence 5889999999877666555544
No 122
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=58.58 E-value=37 Score=25.43 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 21 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 21 g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
|..+...|+.+|.+++++.+ + +.|++.++.+||+.+....+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~--~----~~k~~~~~~~Ga~~~~~~~~ 43 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR--S----EEKLELAKELGADHVIDYSD 43 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES--S----HHHHHHHHHTTESEEEETTT
T ss_pred HHHHHHHHHHcCCEEEEEEC--C----HHHHHHHHhhcccccccccc
Confidence 67778889999944444332 2 24677999999888877664
No 123
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=58.15 E-value=54 Score=26.47 Aligned_cols=59 Identities=20% Similarity=0.415 Sum_probs=29.5
Q ss_pred CCcEEEEeCCCCh---HHHHHHHHHHHcCCceEEEeeCC---CcccchhhHHHHHHcCCEEEEecC
Q 022573 7 GRKSIVAATGAGQ---HGVATAAACAKLALDCTVFMGTA---DMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 7 ~~~~~V~~~ssGN---~g~a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
.+..+|.+ +.|| -|.++|..-+..|+++++++... ..+......+.++.+|.+++....
T Consensus 25 ~~~v~il~-G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 89 (169)
T PF03853_consen 25 GPRVLILC-GPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDS 89 (169)
T ss_dssp T-EEEEEE--SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCC
T ss_pred CCeEEEEE-CCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccc
Confidence 44555554 5676 34444445555899999955431 111122345556666655554333
No 124
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=57.46 E-value=1.9e+02 Score=28.08 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=36.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
..+++. +.|..|++.+..++.+|..++++-. .+ .++++.+.+|++.+.++.
T Consensus 165 akVlVi-GaG~iGl~Aa~~ak~lGA~V~v~d~--~~----~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVI-GAGVAGLAAIGAANSLGAIVRAFDT--RP----EVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC--CH----HHHHHHHHcCCeEEeccc
Confidence 445554 5899999999999999977444432 22 245688889999876663
No 125
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=57.27 E-value=1.5e+02 Score=27.89 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=25.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+.+|+ ++|-.|.++|+.+.+.|+++.++-..
T Consensus 2 Dv~II--GgG~aGl~~A~~l~~~g~~v~lv~~~ 32 (419)
T TIGR03378 2 DVIII--GGGLAGLSCALRLAEAGKKCAIIAAG 32 (419)
T ss_pred CEEEE--CchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 34444 47999999999999999999998765
No 126
>PRK12937 short chain dehydrogenase; Provisional
Probab=57.07 E-value=1.1e+02 Score=25.42 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=42.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
.+++.+++|..|.++|..-.+.|.+++++..... .......+.++.++.++..+..+. .+...+++++..+
T Consensus 7 ~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 7 VAIVTGASRGIGAAIARRLAADGFAVAVNYAGSA-AAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4455566788999999999999998776654322 111222345566788877665533 2333444444333
No 127
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.61 E-value=1.2e+02 Score=25.37 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=40.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHH
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNW 79 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~ 79 (295)
+.+++.+++|..|.+++......|.+++++..... ........++..|.+++....+. .+....++++.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEE--NLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHH
Confidence 44555567788999999988889997777654321 11112234455677776555432 23344444433
No 128
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=56.49 E-value=1.1e+02 Score=24.84 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=43.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC-C-cccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHhc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA-D-MEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVGN 82 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~-~-~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~~ 82 (295)
+.++.++.|..|..+|..=...|-+-++++... . .......++.++..|++|....-+. .+.+.++++++.++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 345556678899999988888776555555553 1 1122346778899999998776543 23444555444433
No 129
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=56.41 E-value=1.2e+02 Score=25.37 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=41.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHH
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWV 80 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~ 80 (295)
+++++.+++|..|.+++..-...|.+++++.... +......+.++..+.++.....+. .+...+++++..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICG--DDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGV 78 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3455556779999999999888998776665431 111223345566677765555433 233434444333
No 130
>PRK06260 threonine synthase; Validated
Probab=56.32 E-value=1.7e+02 Score=27.19 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=25.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcC--------CceEEEeeCCC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLA--------LDCTVFMGTAD 43 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G--------~~~~vv~p~~~ 43 (295)
++.+|+..++|.+..+++.+-+.+. .+.+.+.|.+.
T Consensus 218 pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~ 261 (397)
T PRK06260 218 PDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGA 261 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCC
Confidence 7888887766777777777776643 47777777654
No 131
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.32 E-value=59 Score=29.51 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHH
Q 022573 17 AGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEAS 72 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~ 72 (295)
.|-.|.-.--+|+.+|++++++-.... .|-..++.+||++.+......+.+
T Consensus 190 lGGLGh~aVq~AKAMG~rV~vis~~~~-----kkeea~~~LGAd~fv~~~~d~d~~ 240 (360)
T KOG0023|consen 190 LGGLGHMAVQYAKAMGMRVTVISTSSK-----KKEEAIKSLGADVFVDSTEDPDIM 240 (360)
T ss_pred CcccchHHHHHHHHhCcEEEEEeCCch-----hHHHHHHhcCcceeEEecCCHHHH
Confidence 333777777788999999999875532 234589999999987776333444
No 132
>PRK12831 putative oxidoreductase; Provisional
Probab=56.00 E-value=47 Score=31.62 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=35.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcc--cchhhHHHHHHcCCEEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADME--KQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~--~~~~~~~~l~~~GA~v~~ 63 (295)
.+++. ++||.|.-+|..+.++|.+++++......+ .....++.++..|.+++.
T Consensus 283 ~VvVI-GgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 283 KVAVV-GGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred eEEEE-CCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 44443 579999999999999999999887653111 111223345667777653
No 133
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=55.81 E-value=1.3e+02 Score=25.49 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=37.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
+.+++.+++|..|.+++......|.+++++.... +....-.+.++..|.++..+..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQ--DGANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh--HHHHHHHHHHHhcCceEEEEECC
Confidence 3444556779999999999999999877665432 11122334556678887665553
No 134
>PRK12744 short chain dehydrogenase; Provisional
Probab=55.67 E-value=1.3e+02 Score=25.54 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=40.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC--CcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHH
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA--DMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWV 80 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~--~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~ 80 (295)
.+++.+++|.-|.++|..-...|.+++++.... ..+..+...+.++..|.++..+..+. .+...+++++..
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 344446678899999988888899977665331 11111223345566687776554433 233444444333
No 135
>PRK06483 dihydromonapterin reductase; Provisional
Probab=55.32 E-value=1.1e+02 Score=25.64 Aligned_cols=67 Identities=16% Similarity=0.009 Sum_probs=41.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
.+++.+++|--|.++|......|.+++++-..... ..+.++..|+..+.++-.-.+.....+++..+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYP-----AIDGLRQAGAQCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchh-----HHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHh
Confidence 34454667889999999888889987776533211 12355667877776665333444455444443
No 136
>PRK07478 short chain dehydrogenase; Provisional
Probab=54.89 E-value=1.3e+02 Score=25.40 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=41.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHhc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVGN 82 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~~ 82 (295)
+.+++.+++|--|.++|..-.+.|.+++++... ++..+.-...++..|.++..+..+. .+...+++++..++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARR--QAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345555667889999999888899987666543 2211222335566677776554432 33344444444443
No 137
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=54.21 E-value=46 Score=29.79 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=40.2
Q ss_pred EEEeCCCCh--HHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch
Q 022573 11 IVAATGAGQ--HGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 68 (295)
Q Consensus 11 ~V~~~ssGN--~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~ 68 (295)
.|+- .++| -|+++=-.|+.+|++.+=++.+.. +. +.-.++|+.+||+-++++..+
T Consensus 163 ~vIQ-NganS~VG~~ViQlaka~GiktinvVRdR~-~i-eel~~~Lk~lGA~~ViTeeel 219 (354)
T KOG0025|consen 163 SVIQ-NGANSGVGQAVIQLAKALGIKTINVVRDRP-NI-EELKKQLKSLGATEVITEEEL 219 (354)
T ss_pred eeee-cCcccHHHHHHHHHHHHhCcceEEEeecCc-cH-HHHHHHHHHcCCceEecHHHh
Confidence 4443 3455 778888899999999999998842 21 234558899999998887743
No 138
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=54.17 E-value=50 Score=26.15 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=37.2
Q ss_pred cccCCcEEEEeCCCChHH-HHHHHHHHHcCCceEEEeeCC---CcccchhhHHHHHHcCCEEE
Q 022573 4 KRMGRKSIVAATGAGQHG-VATAAACAKLALDCTVFMGTA---DMEKQSSKVLLMKLLGAQVK 62 (295)
Q Consensus 4 ~~~~~~~~V~~~ssGN~g-~a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~l~~~GA~v~ 62 (295)
++.|.+++|+++-..|.| .++|.-+...|++++++..-. +++..+.-++.|+..|++|+
T Consensus 84 ~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~~~h~~al~~~~~~~~~v~ 146 (157)
T cd01012 84 KATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGSRSKEDHELALARMRQAGAVLT 146 (157)
T ss_pred HhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCCCCHHHHHHHHHHHHHCCCEEe
Confidence 345777888766556655 455556666788887776652 22223345667777888875
No 139
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=54.15 E-value=1.4e+02 Score=25.46 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=40.4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHH-HcCCEEEEecCc--hhHHHHHHHHHHHhc
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMK-LLGAQVKAVDGC--FKEASSEAIRNWVGN 82 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~-~~GA~v~~~~~~--~~~~~~~~~~~~~~~ 82 (295)
.+.+++.++++.-|.++|..-...|.+++++...+. +......+.++ ..|.++..+.-+ -.+...+++++..++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNV-EEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345555566677899999988899998766543321 11111122332 346666555443 233444555544443
No 140
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=54.03 E-value=42 Score=29.12 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=20.8
Q ss_pred cEEEEeCCCCh---HHHHHHHHHHHcCCceEEEeeC
Q 022573 9 KSIVAATGAGQ---HGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 9 ~~~V~~~ssGN---~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+.+|++ +.|| =|.++|..-+..|+++.+|+++
T Consensus 62 ~V~Vlc-G~GNNGGDGlv~AR~L~~~G~~V~v~~~~ 96 (246)
T PLN03050 62 RVLLVC-GPGNNGGDGLVAARHLAHFGYEVTVCYPK 96 (246)
T ss_pred eEEEEE-CCCCCchhHHHHHHHHHHCCCeEEEEEcC
Confidence 445554 5565 4455555555579999999965
No 141
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=53.84 E-value=1.2e+02 Score=25.34 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=40.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHH
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWV 80 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~ 80 (295)
.+++.+++|.-|.++|..-.+.|.++++..-.. ++........++..+.++..+..+. .+...++++++.
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARD-AAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQ 75 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHH
Confidence 455556678899999999988998876654322 2211222345566777776554432 233334444443
No 142
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=53.62 E-value=52 Score=29.54 Aligned_cols=57 Identities=16% Similarity=0.052 Sum_probs=37.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+..++ +-.+|..+|++..++++|+++.++.|+.-...........+..|.++...+.
T Consensus 154 ~i~~v-Gd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d 210 (304)
T PRK00779 154 KVAWV-GDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHD 210 (304)
T ss_pred EEEEE-eCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcC
Confidence 33344 4447899999999999999999999985211111111124667888876544
No 143
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=53.37 E-value=48 Score=29.28 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=11.2
Q ss_pred CChHHHHHHHHHHHcCCce
Q 022573 17 AGQHGVATAAACAKLALDC 35 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~ 35 (295)
+|..|.++...|+.+|.++
T Consensus 153 ~g~vG~~aiqlA~~~G~~v 171 (329)
T cd08294 153 AGAVGSLVGQIAKIKGCKV 171 (329)
T ss_pred ccHHHHHHHHHHHHcCCEE
Confidence 4556666666666666653
No 144
>PLN02342 ornithine carbamoyltransferase
Probab=53.14 E-value=68 Score=29.44 Aligned_cols=50 Identities=8% Similarity=0.039 Sum_probs=34.6
Q ss_pred CCCChHHHHHHHHHHHcCCceEEEeeCC-CcccchhhHHHHHHcCC-EEEEecC
Q 022573 15 TGAGQHGVATAAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLLGA-QVKAVDG 66 (295)
Q Consensus 15 ~ssGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~l~~~GA-~v~~~~~ 66 (295)
+-.-|.+.++..+++++|+.++++.|+. .+. ...++.++..|. ++..+..
T Consensus 201 GD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~--~~~~~~a~~~g~~~~~~~~d 252 (348)
T PLN02342 201 GDGNNIVHSWLLLAAVLPFHFVCACPKGYEPD--AKTVEKARAAGISKIEITND 252 (348)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEECCcccccC--HHHHHHHHHhCCCcEEEEcC
Confidence 4335799999999999999999999986 222 223344556674 6655443
No 145
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=52.99 E-value=85 Score=28.56 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=28.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~ 63 (295)
.+++. ++|..|.+++..++.+|.+.++.+.. ++ .|++.++.+|++.+.
T Consensus 189 ~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~-~~----~~~~~~~~lGa~~~i 236 (368)
T cd08300 189 TVAVF-GLGAVGLAVIQGAKAAGASRIIGIDI-NP----DKFELAKKFGATDCV 236 (368)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC-CH----HHHHHHHHcCCCEEE
Confidence 34443 35788888888888888743333322 11 244566778876443
No 146
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=52.68 E-value=1.5e+02 Score=25.45 Aligned_cols=57 Identities=26% Similarity=0.261 Sum_probs=36.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
+.+++.+++|..|.++|......|.+++++.... +..+.....++..|.++..+..+
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D 67 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ--EKAEAVVAEIKAAGGEALAVKAD 67 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECC
Confidence 4455556678899999999999999877765432 11122233455567777655543
No 147
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=52.56 E-value=1.4e+02 Score=25.09 Aligned_cols=135 Identities=16% Similarity=0.098 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCceEEEeeC-CCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeeeCcc-cCCC
Q 022573 20 HGVATAAACAKLALDCTVFMGT-ADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTV-VGPH 97 (295)
Q Consensus 20 ~g~a~A~~a~~~G~~~~vv~p~-~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 97 (295)
...++-.+|+.+|+...++.+. .+.+.....++.+-..|.+-+.+.....+.....++++.+.. =+....+.. ....
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~g-Ipvv~~d~~~~~~~ 94 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAG-IPVVTVDSDEAPDS 94 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTT-SEEEEESSTHHTTS
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcC-ceEEEEeccccccc
Confidence 5667788889999999997444 355555556667777788866655422222223444444431 233333332 1111
Q ss_pred CCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHH------HhhhhhhcCCCceEEE
Q 022573 98 PCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNAL------GLFHEFINDEDVRLIG 156 (295)
Q Consensus 98 p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~------G~~~~~~~~~~~~vi~ 156 (295)
+...++..-+...+..+++.+.++++.. ..|++-.|.-+... |+-.+++..+.++++.
T Consensus 95 ~~~~~v~~d~~~~G~~~a~~l~~~~~~~-~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~ 158 (257)
T PF13407_consen 95 PRAAYVGTDNYEAGKLAAEYLAEKLGAK-GKVLILSGSPGNPNTQERLEGFRDALKEYPGVEIVD 158 (257)
T ss_dssp TSSEEEEE-HHHHHHHHHHHHHHHHTTT-EEEEEEESSTTSHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cceeeeeccHHHHHHHHHHHHHHHhccC-ceEEeccCCCCchHHHHHHHHHHHHHhhcceeeeee
Confidence 2212222223345677778887777654 44444444433322 2333333456778777
No 148
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=52.45 E-value=44 Score=29.97 Aligned_cols=40 Identities=20% Similarity=0.094 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEE
Q 022573 17 AGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~ 62 (295)
.|..|..++..|+.+|.+++++.+. + .|+++++.+||+.+
T Consensus 174 ~g~iG~~a~~~a~~~G~~vi~~~~~--~----~~~~~a~~~Ga~~v 213 (329)
T TIGR02822 174 FGGSAHLTAQVALAQGATVHVMTRG--A----AARRLALALGAASA 213 (329)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCC--h----HHHHHHHHhCCcee
Confidence 4666777777777777653333221 1 24556777777543
No 149
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=52.34 E-value=50 Score=29.34 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=11.2
Q ss_pred CChHHHHHHHHHHHcCCceE
Q 022573 17 AGQHGVATAAACAKLALDCT 36 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~ 36 (295)
+|-.|.+++..|+.+|.+++
T Consensus 148 ~g~vG~~aiqlAk~~G~~Vi 167 (325)
T TIGR02825 148 AGAVGSVVGQIAKLKGCKVV 167 (325)
T ss_pred ccHHHHHHHHHHHHcCCEEE
Confidence 35555555666666665433
No 150
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=52.25 E-value=42 Score=27.75 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=18.3
Q ss_pred ccCCcEEEEeCCCChHHH-HHHHHHHHcCCceEEEeeC
Q 022573 5 RMGRKSIVAATGAGQHGV-ATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~-a~A~~a~~~G~~~~vv~p~ 41 (295)
+.+.+++|+++-..|.|+ +.+.-+...|++++++..-
T Consensus 135 ~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da 172 (196)
T cd01011 135 ERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDA 172 (196)
T ss_pred HCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccc
Confidence 345555555544455544 3333444456655555443
No 151
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=52.24 E-value=56 Score=28.46 Aligned_cols=48 Identities=27% Similarity=0.281 Sum_probs=31.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~ 63 (295)
.+++. ++|..|..++..++.+|.+.++++ +.++ .|.++.+.+|++.+.
T Consensus 123 ~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~-~~~~----~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 123 RVLVV-GAGMLGLTAAAAAAAAGAARVVAA-DPSP----DRRELALSFGATALA 170 (280)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEE-CCCH----HHHHHHHHcCCcEec
Confidence 34443 468888888888888888744444 2122 345577888886544
No 152
>PRK06181 short chain dehydrogenase; Provisional
Probab=51.90 E-value=1.5e+02 Score=25.16 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=40.3
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
+++.+++|..|.+++......|.+++++.... ...+...+.++..|.++..+..+. .+....+++...+
T Consensus 4 vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 4 VIITGASEGIGRALAVRLARAGAQLVLAARNE--TRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred EEEecCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 44446678899999998889998877765432 111122334555677776554432 3344444444433
No 153
>PRK05866 short chain dehydrogenase; Provisional
Probab=51.87 E-value=1.7e+02 Score=25.72 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=40.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHhc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVGN 82 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~~ 82 (295)
+.+++.+++|--|.++|......|.+++++.... +..+.....++..|.++..+..+. .+...++++...++
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~--~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARRE--DLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3455556678899999999888999877765432 211222234445566655444432 33444444444433
No 154
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=51.79 E-value=1.5e+02 Score=25.24 Aligned_cols=70 Identities=14% Similarity=0.024 Sum_probs=40.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHH
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWV 80 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~ 80 (295)
+.+++.+++|..|.++|......|.+++++-.. ++........++..|.++..+..+. .+....++++..
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDIN--QELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIE 82 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 345555667889999999999999987666322 2221222335556687776555432 333434444333
No 155
>CHL00194 ycf39 Ycf39; Provisional
Probab=51.66 E-value=83 Score=27.97 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=34.5
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+++.+++|..|..++......|.+++++..... +...+...|.+++..+-
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~------~~~~l~~~~v~~v~~Dl 52 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRNLR------KASFLKEWGAELVYGDL 52 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcChH------HhhhHhhcCCEEEECCC
Confidence 444467899999999999999999888875421 11234445777765543
No 156
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=51.63 E-value=60 Score=29.64 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=34.2
Q ss_pred ChHHHHHHHH-HHHcCCceEEEeeCCC-cccchhhHHHHHHcCCEEEEecC
Q 022573 18 GQHGVATAAA-CAKLALDCTVFMGTAD-MEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 18 GN~g~a~A~~-a~~~G~~~~vv~p~~~-~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+|.+.|++.. ++.+|+.++++.|++- ++ ...++.++..|.++..+..
T Consensus 171 ~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~--~~~~~~~~~~g~~~~~~~d 219 (338)
T PRK08192 171 GRTVHSLSRLLCMYKNVSFTLVSPKELAMP--DYVISDIENAGHKITITDQ 219 (338)
T ss_pred CchHHHHHHHHHHhcCCEEEEECCccccCC--HHHHHHHHHcCCeEEEEcC
Confidence 5789999976 6677999999999862 22 2234456777888877665
No 157
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=51.60 E-value=1.4e+02 Score=24.91 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=35.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+.+++.+++|.-|.++|......|.+++++..... .........++..|.++.....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS-PRRVKWLEDQKALGFDFIASEG 60 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh-HHHHHHHHHHHhcCCcEEEEEc
Confidence 34455567788999999999999987666443221 1112234455667888765444
No 158
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=51.58 E-value=77 Score=28.65 Aligned_cols=49 Identities=24% Similarity=0.256 Sum_probs=34.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEe
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV 64 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~ 64 (295)
.+++.+.+|.-|..+--.|+.+|. +++++... + .|.+.++.+||+.+..
T Consensus 145 ~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s-~----~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 145 TVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSS-S----EKLELLKELGADHVIN 193 (326)
T ss_pred EEEEecCCchHHHHHHHHHHHcCC-cEEEEecC-H----HHHHHHHhcCCCEEEc
Confidence 344445578899999999999998 44444332 2 3455899999987655
No 159
>PRK12939 short chain dehydrogenase; Provisional
Probab=51.38 E-value=1.4e+02 Score=24.86 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=34.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
+.+++.+++|.-|.++|....+.|.+++++... ++..+.....++..++++..+..+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D 64 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGL--AAEARELAAALEAAGGRAHAIAAD 64 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEEcc
Confidence 344555667899999999999999886665322 221122233455567776655543
No 160
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=51.36 E-value=58 Score=29.21 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=35.1
Q ss_pred CCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhH----HHHHHcCCEEEEecC
Q 022573 15 TGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKV----LLMKLLGAQVKAVDG 66 (295)
Q Consensus 15 ~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~----~~l~~~GA~v~~~~~ 66 (295)
+-.-|.+.|+..+++++|+.++++.|..-... ...+ ...+..|+++..++.
T Consensus 154 GD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~-~~~~~~a~~~~~~~g~~~~~~~d 208 (302)
T PRK14805 154 GDGNNVTHSLMYGAAILGATMTVICPPGHFPD-GQIVAEAQELAAKSGGKLVLTSD 208 (302)
T ss_pred cCCCccHHHHHHHHHHcCCEEEEECCchhcCC-HHHHHHHHHHHHHcCCEEEEEcC
Confidence 33346889999999999999999999862111 1111 134667998887665
No 161
>PRK08862 short chain dehydrogenase; Provisional
Probab=51.10 E-value=1.3e+02 Score=25.21 Aligned_cols=71 Identities=10% Similarity=0.024 Sum_probs=39.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEec--CchhHHHHHHHHHHHhc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD--GCFKEASSEAIRNWVGN 82 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~--~~~~~~~~~~~~~~~~~ 82 (295)
.+++.+.++.-|.++|....+.|.+++++-.. .+..+...+.++..|.+++.+. -.-.+...+++++..++
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~--~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQD--QSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 34444556678999999999999986665432 2222223445666677765443 22223344444444433
No 162
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=50.89 E-value=69 Score=30.29 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHc-CCceEEEeeCCC-cccchhhHHHHHHcCCEEEEecC
Q 022573 18 GQHGVATAAACAKL-ALDCTVFMGTAD-MEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 18 GN~g~a~A~~a~~~-G~~~~vv~p~~~-~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+|.+.|+...++++ |++++++.|++- +. ...+..++..|+.+..++.
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~--~~~~~~~~~~G~~v~~~~d 301 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEMP--AYIVEQISRNGHVIEQTDD 301 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCccccC--HHHHHHHHhcCCeEEEEcC
Confidence 58999999997765 999999999862 22 2223455667888877655
No 163
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=50.64 E-value=70 Score=31.22 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=40.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK 69 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~ 69 (295)
+++|++ +.|+.|+.+|-.-+..|.+++++=++ + .+.+.++..|.+++.-+....
T Consensus 418 ~hiiI~-G~G~~G~~la~~L~~~g~~vvvId~d--~----~~~~~~~~~g~~~i~GD~~~~ 471 (558)
T PRK10669 418 NHALLV-GYGRVGSLLGEKLLAAGIPLVVIETS--R----TRVDELRERGIRAVLGNAANE 471 (558)
T ss_pred CCEEEE-CCChHHHHHHHHHHHCCCCEEEEECC--H----HHHHHHHHCCCeEEEcCCCCH
Confidence 556665 68999999999999999998766533 2 245577788988887777543
No 164
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=50.37 E-value=61 Score=29.29 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=26.8
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEE
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 61 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v 61 (295)
++|..|...+..++.+|.+++++.+.... +.|+++++.+|++.
T Consensus 180 G~G~vG~~a~q~ak~~G~~vi~~~~~~~~---~~~~~~~~~~Ga~~ 222 (355)
T cd08230 180 GAGPIGLLAALLLRLRGFEVYVLNRRDPP---DPKADIVEELGATY 222 (355)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcCCEE
Confidence 35778888788888888765544432101 23555777788875
No 165
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=50.02 E-value=1.6e+02 Score=24.93 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=41.6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHhc
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVGN 82 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~~ 82 (295)
.+.+++++++|.-|.++|......|.+++++-... . .......++..|.++..+..+. .+...+++++..++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~--~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE--L-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch--H-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 34555656778899999999999999877664331 1 1122334556677765444322 23333444444443
No 166
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=49.84 E-value=1e+02 Score=22.72 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=28.7
Q ss_pred HHHhhcCCceEEEeCHHHHHHHHHHHHHHhCCC-CCcchhhH
Q 022573 216 SFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIF-PALEASHA 256 (295)
Q Consensus 216 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~-~~~ssa~a 256 (295)
.+.....+|-++.=+++-....+....++.||. .+|+..++
T Consensus 56 ~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfGP~k~aA 97 (100)
T PF02844_consen 56 DFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVFGPSKEAA 97 (100)
T ss_dssp HHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEES--HHHH
T ss_pred HHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEECcCHHHH
Confidence 445566677666668888888899999999998 88876554
No 167
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.79 E-value=1.5e+02 Score=25.21 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=58.7
Q ss_pred ccCCcEEEEeCCCChHHHH------HHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHH
Q 022573 5 RMGRKSIVAATGAGQHGVA------TAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRN 78 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a------~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~ 78 (295)
..+.+.++..+++|+.-.. ++..=...+ ++-+|.|.++ -++.|+.+|++=+.+-..|-+...+...+
T Consensus 65 da~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~-~v~vvTts~A------vv~aL~al~a~ri~vlTPY~~evn~~e~e 137 (238)
T COG3473 65 DAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAK-GVPVVTTSTA------VVEALNALGAQRISVLTPYIDEVNQREIE 137 (238)
T ss_pred ccccCEEEEeccceeeecCCchhHHHHHHHHhcc-CCceeechHH------HHHHHHhhCcceEEEeccchhhhhhHHHH
Confidence 3466777777777763333 333333333 6666676543 35699999998655544344333334344
Q ss_pred HHhccCCceeeeCc--ccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCC
Q 022573 79 WVGNLEKSYYLTGT--VVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGS 135 (295)
Q Consensus 79 ~~~~~~~~~~~~~~--~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~ 135 (295)
+.+. +++=+... ..-..+.. +-.-.-...++++.++. .++.|.||+++-.
T Consensus 138 f~~~--~Gfeiv~~~~Lgi~dn~e--igr~~P~~~y~lAk~~~---~~~~DaiFiSCTn 189 (238)
T COG3473 138 FLEA--NGFEIVDFKGLGITDNLE--IGRQEPWAVYRLAKEVF---TPDADAIFISCTN 189 (238)
T ss_pred HHHh--CCeEEEEeeccCCcccch--hcccChHHHHHHHHHhc---CCCCCeEEEEeec
Confidence 5543 45544321 10001111 00000011345554443 4678999999743
No 168
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=49.62 E-value=1.4e+02 Score=24.97 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=39.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
.+++.+.+|.-|.++|......|..++++.... . ....+.++.++.++..+..+. .+....++++..+
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-P---SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVE 76 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-H---HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 344446668899999999999999877765431 1 112335566676665554432 3334444444333
No 169
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=49.60 E-value=1.8e+02 Score=27.09 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=30.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHH-cCCceEEEeeC-CCcccchhhHHHHHHcCCEEEEecC
Q 022573 9 KSIVAATGAGQHGVATAAACAK-LALDCTVFMGT-ADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~-~G~~~~vv~p~-~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+.++++ ++++.+..++..+-. -| -.|+++. .-. .-...++.+|++++.++-
T Consensus 142 ~~Iiit-~G~~~al~~~~~~l~~pg--d~Vlv~~P~y~----~~~~~~~~~g~~~~~v~~ 194 (431)
T PRK15481 142 FEIDLT-SGAIDAIERLLCAHLLPG--DSVAVEDPCFL----SSINMLRYAGFSASPVSV 194 (431)
T ss_pred CeEEEe-cCcHHHHHHHHHHhCCCC--CEEEEeCCCcH----HHHHHHHHcCCeEEeecc
Confidence 366664 567787766655432 23 2344444 222 234478899999988865
No 170
>PRK07454 short chain dehydrogenase; Provisional
Probab=49.50 E-value=1.5e+02 Score=24.66 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=40.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
+.+++.+++|..|.+++......|.+++++.... +........++..+.++..+..+. .+....+++...+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQ--DALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3455556778999999999999999877766432 111112223445566665444422 3333344444443
No 171
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=49.32 E-value=1.6e+02 Score=24.74 Aligned_cols=70 Identities=19% Similarity=0.058 Sum_probs=40.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
++++.+++|.-|.+++......|.+++++... ....+...+.++..|.++..+..+. .+...+++++..+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 73 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLN--EETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAE 73 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 34555667889999999998999876555432 2111223345666787776554432 3344444444443
No 172
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=49.23 E-value=32 Score=23.13 Aligned_cols=26 Identities=42% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++|=.|.+.|+..++.|++++|+=-.
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecC
Confidence 47999999999999999988887533
No 173
>PRK06114 short chain dehydrogenase; Provisional
Probab=49.19 E-value=1.6e+02 Score=24.85 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=40.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
+.+++.+++|--|.++|..-...|.++++........ .....+.++..|.++..+..+. .+...+++++..+
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDG-LAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3445556667789999988888999877765432211 1122345566677765554422 3334444444333
No 174
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.03 E-value=1.6e+02 Score=24.74 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=41.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
.+++.+++|.-|.+++..-...|.+++++.....+. .....+.++..+.++..+..+. .+...+++++..+
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE-LAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQA 76 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH-HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 455557778899999998888998877765432211 1122334555677766554433 2333444444443
No 175
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=48.82 E-value=1.6e+02 Score=24.49 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=36.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
+.+++.+++|..|.+++....+.|.+++++.....+ ......+.++..+.++..+..+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEA-GAEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHHHHhcCCceEEEEcC
Confidence 345555777889999999988889987666543221 1112233455567787776553
No 176
>PRK05876 short chain dehydrogenase; Provisional
Probab=48.78 E-value=1.8e+02 Score=25.19 Aligned_cols=71 Identities=17% Similarity=0.085 Sum_probs=40.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
+.+++++++|--|.++|..-...|.+++++... .+........++..|.++..+..+. .+.+.+++++..+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~--~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVD--KPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345555667889999999988999986655422 1111222335556687775554432 3334444444433
No 177
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=48.72 E-value=64 Score=31.52 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=37.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC---------------CcccchhhHHHHHHcCCEEEEe
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTA---------------DMEKQSSKVLLMKLLGAQVKAV 64 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~---------------~~~~~~~~~~~l~~~GA~v~~~ 64 (295)
|.+. ++. ++|-.|.+.|..++++|.++++|=... ..+....+++.++.+|++++.-
T Consensus 137 g~~V-~VI-GaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 137 GKRV-AVI-GGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCEE-EEE-CCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4444 443 579999999999999999977763211 0111234566788899987653
No 178
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=48.71 E-value=90 Score=27.49 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=38.0
Q ss_pred ceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeecCC
Q 022573 86 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAG 161 (295)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~ 161 (295)
-.|+.+... -||+.+-.+--.....+++..+.+ ..++.+|+++-|-++++. ..+++.-++.|+||.|.-
T Consensus 33 ~iY~~D~a~--~PYG~ks~e~I~~~~~~i~~~l~~---~~ik~lVIACNTASa~al--~~LR~~~~iPVvGviPai 101 (269)
T COG0796 33 IIYVGDTAR--FPYGEKSEEEIRERTLEIVDFLLE---RGIKALVIACNTASAVAL--EDLREKFDIPVVGVIPAI 101 (269)
T ss_pred EEEEecCCC--CCCCCCCHHHHHHHHHHHHHHHHH---cCCCEEEEecchHHHHHH--HHHHHhCCCCEEEeccch
Confidence 344444332 777643211111113444444433 338999999977665433 345555578899998655
No 179
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=48.56 E-value=61 Score=28.97 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=13.0
Q ss_pred CChHHHHHHHHHHHcCCceEE
Q 022573 17 AGQHGVATAAACAKLALDCTV 37 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~v 37 (295)
+|..|.++...|+.+|.++++
T Consensus 161 ~G~vG~~aiqlAk~~G~~Vi~ 181 (338)
T cd08295 161 SGAVGQLVGQLAKLKGCYVVG 181 (338)
T ss_pred ccHHHHHHHHHHHHcCCEEEE
Confidence 466666666666666665433
No 180
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=48.47 E-value=73 Score=26.84 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=41.8
Q ss_pred CCceeeeCcccCCCCCch--h-hhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeecC
Q 022573 84 EKSYYLTGTVVGPHPCPI--M-VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAA 160 (295)
Q Consensus 84 ~~~~~~~~~~~~~~p~~~--~-~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~ 160 (295)
++..|++..+.. .+|.+ + +-.+.....-.+...+.+.++.++..-|.-+|+|+.......+...++.-+|++||..
T Consensus 28 pR~~Fvp~~~~~-~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~ 106 (209)
T PF01135_consen 28 PREDFVPPAFRD-LAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERD 106 (209)
T ss_dssp -GGGCSSCGGGG-GTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESB
T ss_pred CHHHhCchhhhc-CCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECcc
Confidence 456777764322 44432 1 2223322234455556677777888999999988544433333224666789999977
Q ss_pred C
Q 022573 161 G 161 (295)
Q Consensus 161 ~ 161 (295)
.
T Consensus 107 ~ 107 (209)
T PF01135_consen 107 P 107 (209)
T ss_dssp H
T ss_pred H
Confidence 6
No 181
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=48.18 E-value=1e+02 Score=28.05 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEE
Q 022573 17 AGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~ 62 (295)
+|..|..++..|+.+|.+.++.+.. ++ .+++.++.+||+.+
T Consensus 194 ~G~iG~~a~q~Ak~~G~~~Vi~~~~-~~----~~~~~a~~~Ga~~~ 234 (368)
T TIGR02818 194 LGGIGLSVIQGARMAKASRIIAIDI-NP----AKFELAKKLGATDC 234 (368)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEcC-CH----HHHHHHHHhCCCeE
Confidence 5777777777777777633333311 11 24446666777543
No 182
>PRK07326 short chain dehydrogenase; Provisional
Probab=48.17 E-value=1.6e+02 Score=24.42 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=24.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
.+++.+++|..|.+++......|.+++++..
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 3444466799999999999889998777653
No 183
>PRK05867 short chain dehydrogenase; Provisional
Probab=47.89 E-value=1.7e+02 Score=24.69 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=39.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc--hhHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~--~~~~~~~~~~~~~~ 81 (295)
+.+++++++|.-|.++|..-...|.+++++... .+..+.....++..|.++..+..+ -.+...+++++..+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARH--LDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 345555666788999998888889886665432 221222334555667676544432 23344445444443
No 184
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=47.78 E-value=1.7e+02 Score=24.76 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=35.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
.+++.+++|--|.++|....+.|.+++++.....+. .....+.++..|.++..+..
T Consensus 9 ~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 64 (261)
T PRK08936 9 VVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEE-ANDVAEEIKKAGGEAIAVKG 64 (261)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHHHHcCCeEEEEEe
Confidence 444546678899999999999998877765532211 11223345566877765544
No 185
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=47.77 E-value=96 Score=27.24 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=34.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEE
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~ 63 (295)
..+++.+.+|..|.+++..|+.+|.+++++.. ++ .|.+.++.+|++-+.
T Consensus 148 ~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~--~~----~~~~~~~~~g~~~~~ 196 (324)
T cd08288 148 GPVLVTGAAGGVGSVAVALLARLGYEVVASTG--RP----EEADYLRSLGASEII 196 (324)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC--CH----HHHHHHHhcCCCEEE
Confidence 35666555699999999999999998655543 22 345577889985444
No 186
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=47.45 E-value=1.7e+02 Score=24.99 Aligned_cols=73 Identities=8% Similarity=-0.110 Sum_probs=37.7
Q ss_pred EEEEeCCC--ChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEE--EEecCchhHHHHHHHHHHHhc
Q 022573 10 SIVAATGA--GQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV--KAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 10 ~~V~~~ss--GN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v--~~~~~~~~~~~~~~~~~~~~~ 82 (295)
.+++++++ +--|.++|....+.|.++++........+...+++.++..+.++ +.++-.-.+...+++++..++
T Consensus 8 ~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (258)
T PRK07370 8 KALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK 84 (258)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence 34444443 45888888888889998766542211111122344454444443 334433334444555554443
No 187
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=47.36 E-value=1.7e+02 Score=24.49 Aligned_cols=72 Identities=21% Similarity=0.165 Sum_probs=41.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
+.+++.+++|--|.++|......|..+++..... ++..+.-...++..|.++..+.-+. .+...+++++..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSS-KEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCc-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4455556678899999998888898876544322 2211222345566787876665432 3344444444433
No 188
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=46.81 E-value=1e+02 Score=28.02 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHcCCceEEEee-CC-CcccchhhH----HHHHHcCCEEEEecC
Q 022573 18 GQHGVATAAACAKLALDCTVFMG-TA-DMEKQSSKV----LLMKLLGAQVKAVDG 66 (295)
Q Consensus 18 GN~g~a~A~~a~~~G~~~~vv~p-~~-~~~~~~~~~----~~l~~~GA~v~~~~~ 66 (295)
+|...|++..+.++|+.++++.| +. .+. ..-+ +..+..|.++..+..
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~d 237 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILD--ERYMDWAEQNAAESGGSLTVSHD 237 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCC--HHHHHHHHHHHHHcCCeEEEEcC
Confidence 47999999999999999999999 64 221 1111 124567888876655
No 189
>PRK06949 short chain dehydrogenase; Provisional
Probab=46.55 E-value=1.8e+02 Score=24.51 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=25.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+.+++.+++|.-|.+++....+.|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 445555677889999999999999987666543
No 190
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=46.39 E-value=48 Score=30.27 Aligned_cols=61 Identities=21% Similarity=0.149 Sum_probs=42.6
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
++..|.+..|.+ ++|..+.-+|+.+-.++=.-.|++|.-+- ......+...|++++.++-+
T Consensus 35 a~~~g~~~~~~~-~sgt~Al~~al~~l~~~~gdeVi~p~~t~---~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 35 AEYFGVKYAVAV-SSGTSALHLALRALGLGPGDEVIVPAYTF---PATASAILWAGAEPVFVDID 95 (363)
T ss_dssp HHHHTSSEEEEE-SSHHHHHHHHHHHTTGGTTSEEEEESSS----THHHHHHHHTT-EEEEE-BE
T ss_pred HHHhCCCeEEEe-CChhHHHHHHHHhcCCCcCceEecCCCcc---hHHHHHHHHhccEEEEEecc
Confidence 345577788876 67999999998884444348888988432 23456889999999999874
No 191
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=46.07 E-value=73 Score=30.22 Aligned_cols=32 Identities=38% Similarity=0.391 Sum_probs=25.8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
++.+++. ++|..|.-+|...+++|.+++++..
T Consensus 172 ~~~vvVI-GgG~ig~E~A~~l~~~G~~Vtlv~~ 203 (466)
T PRK07818 172 PKSIVIA-GAGAIGMEFAYVLKNYGVDVTIVEF 203 (466)
T ss_pred CCeEEEE-CCcHHHHHHHHHHHHcCCeEEEEec
Confidence 4556664 5799999999999999999988764
No 192
>PRK08643 acetoin reductase; Validated
Probab=45.95 E-value=1.8e+02 Score=24.48 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=39.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
.+++.+++|.-|.++|......|.+++++.... +........++..|.++.....+. .+...+++++..+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE--ETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 344446678899999999999998766654332 111111224455677776555433 2334444444433
No 193
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=45.86 E-value=26 Score=27.37 Aligned_cols=29 Identities=34% Similarity=0.272 Sum_probs=24.3
Q ss_pred EEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 12 VAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 12 V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++. ++|.-+.+++..++.+|++++++=|.
T Consensus 2 ~I~-GaG~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 2 VIF-GAGHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EEE-S-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred EEE-eCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 454 58999999999999999999999887
No 194
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=45.80 E-value=64 Score=27.41 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCC
Q 022573 20 HGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGA 59 (295)
Q Consensus 20 ~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA 59 (295)
+.++||.+|++-|=+.+.++|+... +....+.|..+|.
T Consensus 57 ttiaLaaAAr~TgGR~vCIvp~~~~--~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 57 TTIALAAAARQTGGRHVCIVPDEQS--LSEYKKALGEAGL 94 (218)
T ss_pred hHHHHHHHHHhcCCeEEEEcCChhh--HHHHHHHHhhccc
Confidence 7999999999999999999998421 1223445665664
No 195
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=45.69 E-value=34 Score=31.50 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCC
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
++|+.|+-++.+|+++|++++++-|..
T Consensus 8 GGGQLgrMm~~aa~~lG~~v~vLdp~~ 34 (375)
T COG0026 8 GGGQLGRMMALAAARLGIKVIVLDPDA 34 (375)
T ss_pred cCcHHHHHHHHHHHhcCCEEEEecCCC
Confidence 579999999999999999999999873
No 196
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=45.61 E-value=82 Score=28.25 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=34.7
Q ss_pred CCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHH----HHHcCCEEEEecC
Q 022573 15 TGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLL----MKLLGAQVKAVDG 66 (295)
Q Consensus 15 ~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~----l~~~GA~v~~~~~ 66 (295)
+-..|..+|++..++++|+.++++.|+.-... ...... .+..|+++.....
T Consensus 155 Gd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~-~~~~~~~~~~~~~~g~~~~~~~d 209 (304)
T TIGR00658 155 GDGNNVCNSLMLAGAKLGMDVVVATPEGYEPD-ADIVKKAQEIAKENGGSVELTHD 209 (304)
T ss_pred eCCCchHHHHHHHHHHcCCEEEEECCchhcCC-HHHHHHHHHHHHHcCCeEEEEcC
Confidence 33478999999999999999999999852111 111222 3557888876654
No 197
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=45.32 E-value=68 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=24.5
Q ss_pred cccCCcEEEEeCCCChHHH-HHHHHHHHcCCceEEEeeC
Q 022573 4 KRMGRKSIVAATGAGQHGV-ATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 4 ~~~~~~~~V~~~ssGN~g~-a~A~~a~~~G~~~~vv~p~ 41 (295)
++.|.+++|+++-..|.|+ +.|.-+..+|++++++-.-
T Consensus 110 ~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da 148 (179)
T cd01015 110 TARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVREC 148 (179)
T ss_pred HHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeecc
Confidence 3556677777665566665 5566666677777666543
No 198
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=45.24 E-value=1.1e+02 Score=27.93 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHcCCceEEEeeCC-CcccchhhH----HHHHHcCCEEEEecC
Q 022573 18 GQHGVATAAACAKLALDCTVFMGTA-DMEKQSSKV----LLMKLLGAQVKAVDG 66 (295)
Q Consensus 18 GN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~----~~l~~~GA~v~~~~~ 66 (295)
.|.++|+..+++++|+.++++.|+. .+. ...+ ...+..|+++..+..
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~--~~~~~~~~~~~~~~g~~~~~~~d 217 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPD--DELLNKCKEIAAETGGKITITDD 217 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCC--HHHHHHHHHHHHHcCCeEEEEcC
Confidence 4799999999999999999999985 221 1111 223467888876654
No 199
>PLN02827 Alcohol dehydrogenase-like
Probab=44.93 E-value=1.3e+02 Score=27.54 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEE
Q 022573 17 AGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~ 62 (295)
+|-.|..+...|+.+|.+.++.+.. ++ .|.+.++.+|++-+
T Consensus 202 ~G~vG~~~iqlak~~G~~~vi~~~~-~~----~~~~~a~~lGa~~~ 242 (378)
T PLN02827 202 LGTVGLSVAQGAKLRGASQIIGVDI-NP----EKAEKAKTFGVTDF 242 (378)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECC-CH----HHHHHHHHcCCcEE
Confidence 5667777777777777654443321 11 24446667777543
No 200
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=44.89 E-value=78 Score=26.60 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=13.3
Q ss_pred cCCcEEEEeCCCChHHHH-HHHHHHHcCCceEEE
Q 022573 6 MGRKSIVAATGAGQHGVA-TAAACAKLALDCTVF 38 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a-~A~~a~~~G~~~~vv 38 (295)
.+.+++|+++-..|.|+. .+.-+...|++++|+
T Consensus 144 ~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv 177 (212)
T PTZ00331 144 HGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVL 177 (212)
T ss_pred CCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEe
Confidence 344444444333444432 223333344444443
No 201
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=44.88 E-value=1.8e+02 Score=27.72 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=47.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCc-eEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc-cC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALD-CTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN-LE 84 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~-~~ 84 (295)
.++++|++ |+..++.. ..++.+==+ -+|++.+ |. -..-++.++.+|++++.++.+-+.-.-+++++..++ ..
T Consensus 154 ~~~~IiiT-~G~q~al~--l~~~~l~~pGd~v~vE~--Pt-Y~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~ 227 (459)
T COG1167 154 EPEQIVIT-SGAQQALD--LLLRLLLDPGDTVLVED--PT-YPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKP 227 (459)
T ss_pred CcCeEEEe-CCHHHHHH--HHHHHhCCCCCEEEEcC--CC-cHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCC
Confidence 45677774 33445555 444444334 4444433 11 124566999999999999875433222333444433 34
Q ss_pred CceeeeCcccCCCCCc
Q 022573 85 KSYYLTGTVVGPHPCP 100 (295)
Q Consensus 85 ~~~~~~~~~~~~~p~~ 100 (295)
+..|+...+- ||.+
T Consensus 228 k~~y~~P~~q--NPtG 241 (459)
T COG1167 228 KAVYVTPTFQ--NPTG 241 (459)
T ss_pred cEEEECCCCC--CCCC
Confidence 6677765554 5654
No 202
>PRK06194 hypothetical protein; Provisional
Probab=44.83 E-value=2e+02 Score=24.71 Aligned_cols=58 Identities=22% Similarity=0.162 Sum_probs=35.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 68 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~ 68 (295)
+.+++++++|.-|.++|......|.+++++-.. .+........++..|.++..+..+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~ 64 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQ--QDALDRAVAELRAQGAEVLGVRTDV 64 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC--hHHHHHHHHHHHhcCCeEEEEECCC
Confidence 345555667889999998888889887665432 2111223334455577876665543
No 203
>PRK07832 short chain dehydrogenase; Provisional
Probab=44.68 E-value=1.9e+02 Score=24.78 Aligned_cols=49 Identities=22% Similarity=0.131 Sum_probs=30.5
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEE
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 61 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v 61 (295)
+++.+++|..|.++|......|.+++++-... +..+.....++..|+++
T Consensus 3 vlItGas~giG~~la~~la~~G~~vv~~~r~~--~~~~~~~~~~~~~~~~~ 51 (272)
T PRK07832 3 CFVTGAASGIGRATALRLAAQGAELFLTDRDA--DGLAQTVADARALGGTV 51 (272)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCCc
Confidence 45556678899999999999998866654331 11122233455566654
No 204
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=44.60 E-value=1.9e+02 Score=24.47 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=22.4
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
+++.+++|.-|.++|......|.+++++-
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 44446678899999999999998866654
No 205
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=44.53 E-value=1.3e+02 Score=27.58 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=36.2
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+++..|...+.|-.|.-.--+|+.+|.+++.|-.. ..|.+..+.+||+.+....
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~------~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS------EEKLELAKKLGADHVINSS 218 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC------hHHHHHHHHhCCcEEEEcC
Confidence 33444443456777777777888889666665532 2466688999999887766
No 206
>PRK06172 short chain dehydrogenase; Provisional
Probab=44.52 E-value=1.9e+02 Score=24.30 Aligned_cols=56 Identities=27% Similarity=0.205 Sum_probs=35.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+++++.+.+|.-|.++|......|.+++++..... ..+.....++..|.++.....
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAA--GGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 44555566788999999999999988766654321 112223455667777755544
No 207
>PLN02740 Alcohol dehydrogenase-like
Probab=44.43 E-value=1.3e+02 Score=27.53 Aligned_cols=43 Identities=19% Similarity=0.104 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEE
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~ 63 (295)
++|.-|..++..|+.+|.+-++.+.. ++ .|++.++.+|++.+.
T Consensus 206 G~G~vG~~a~q~ak~~G~~~Vi~~~~-~~----~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 206 GLGAVGLAVAEGARARGASKIIGVDI-NP----EKFEKGKEMGITDFI 248 (381)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEEcC-Ch----HHHHHHHHcCCcEEE
Confidence 35777777777777787642333311 11 244566777776443
No 208
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=44.41 E-value=1.8e+02 Score=24.02 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=35.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
.+++.+.+|..|..++..-...|.+++++.... .........++..|.++.....+
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D 62 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNE--EAAEALAAELRAAGGEARVLVFD 62 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh--hHHHHHHHHHHhcCCceEEEEcc
Confidence 455556779999999999888999965555432 11112234456678777665543
No 209
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=44.26 E-value=73 Score=28.71 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=27.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~ 63 (295)
++++.+ +|..|..++.+++.+|.++++ + ..++ .|++.++.+|++.++
T Consensus 169 ~VlV~G-~G~vG~~a~~~a~~~G~~vi~-~-~~~~----~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 169 LVIVIG-AGGVGGYMVQTAKAMGAAVVA-I-DIDP----EKLEMMKGFGADLTL 215 (349)
T ss_pred EEEEEC-CCHHHHHHHHHHHHcCCeEEE-E-cCCH----HHHHHHHHhCCceEe
Confidence 344433 488888888888888875333 2 2122 244566778876543
No 210
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=44.17 E-value=35 Score=31.63 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=23.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
.+|+ ++|..|.+.|..++..|.+++|+=-.
T Consensus 2 VvVI--G~G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 2 VVVI--GGGLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp EEEE---SSHHHHHHHHHHHHTTT-EEEEESS
T ss_pred EEEE--CCCHHHHHHHHHHhhhcCeEEEEEee
Confidence 3454 47999999999999999988887544
No 211
>PRK06953 short chain dehydrogenase; Provisional
Probab=44.05 E-value=1.8e+02 Score=23.94 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=36.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHH
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEA 75 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~ 75 (295)
.+++.+.+|.-|.++|..-...|.+++++... + .+.+.++..+.+.+.++-.-.+...++
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~--~----~~~~~~~~~~~~~~~~D~~~~~~v~~~ 62 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD--A----AALAALQALGAEALALDVADPASVAGL 62 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC--H----HHHHHHHhccceEEEecCCCHHHHHHH
Confidence 34555667889999998887889887766433 1 123345556777666655434444343
No 212
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=43.94 E-value=93 Score=27.54 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=6.6
Q ss_pred CCCEEEEecCC
Q 022573 125 KPDVLLACVGS 135 (295)
Q Consensus 125 ~~d~vvv~vG~ 135 (295)
.+|.++-++|+
T Consensus 212 ~~d~vid~~g~ 222 (324)
T cd08291 212 NATIFFDAVGG 222 (324)
T ss_pred CCcEEEECCCc
Confidence 36666666654
No 213
>PRK07035 short chain dehydrogenase; Provisional
Probab=43.90 E-value=1.9e+02 Score=24.22 Aligned_cols=72 Identities=13% Similarity=-0.001 Sum_probs=41.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc--hhHHHHHHHHHHHhc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVGN 82 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~--~~~~~~~~~~~~~~~ 82 (295)
+.+++.+++|.-|.+++....+.|.+++++-... ...+...+.+...|.++..+.-+ ..+....++++..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL--DGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4455556778899999999999999877665432 11122233445567665544432 233344444444443
No 214
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=43.81 E-value=76 Score=28.73 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=6.3
Q ss_pred CCCEEEEecC
Q 022573 125 KPDVLLACVG 134 (295)
Q Consensus 125 ~~d~vvv~vG 134 (295)
.+|.++=++|
T Consensus 228 gvD~v~d~vG 237 (348)
T PLN03154 228 GIDIYFDNVG 237 (348)
T ss_pred CcEEEEECCC
Confidence 3666666665
No 215
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=43.79 E-value=2e+02 Score=24.33 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=40.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--chhHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~~~~~~~~~~~~~~~ 81 (295)
+.+++.+.+|.-|.++|..-...|.+++++...... +...+.+...|.++..+.. .-.+....++++..+
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNW---DETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHH---HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 445555667889999999888899998877654211 1122345556766654444 223344444444443
No 216
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=43.76 E-value=85 Score=33.19 Aligned_cols=55 Identities=27% Similarity=0.309 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC---------c------ccchhhHHHHHHcCCEEEE
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTAD---------M------EKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~---------~------~~~~~~~~~l~~~GA~v~~ 63 (295)
+++.+|+ ++|..|.+.|+..++.|++++||=.... + +.....++.++.+|.+++.
T Consensus 539 gKkVaII--GgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 539 RKKVAVI--GAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CCcEEEE--CCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 4455554 5799999999999999999998854310 0 1112234567778888754
No 217
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=43.73 E-value=99 Score=27.84 Aligned_cols=33 Identities=12% Similarity=-0.041 Sum_probs=27.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
+..++ +-.+|.+.|+...++++|+.++++.|++
T Consensus 155 ~va~v-Gd~~rv~~Sl~~~~~~~G~~v~~~~P~~ 187 (311)
T PRK14804 155 QLTYI-GVHNNVVNSLIGITAALGIHLTLVTPIA 187 (311)
T ss_pred EEEEE-CCCCcHHHHHHHHHHHcCCEEEEECCCC
Confidence 33444 4457899999999999999999999986
No 218
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.65 E-value=2.3e+02 Score=24.98 Aligned_cols=59 Identities=25% Similarity=0.174 Sum_probs=37.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 68 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~ 68 (295)
+.+++++++|.-|.++|..-...|.++++.-... ....+...+.++..|.++..+..+.
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~-~~~~~~~~~~i~~~g~~~~~~~~Dv 71 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVAS-ALDASDVLDEIRAAGAKAVAVAGDI 71 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCc-hhHHHHHHHHHHhcCCeEEEEeCCC
Confidence 3455556678899999988888898866653321 1111223445677788887666543
No 219
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=43.56 E-value=60 Score=25.83 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=34.7
Q ss_pred cccCCcEEEEeCCCChHHH-HHHHHHHHcCCceEEEeeCC---CcccchhhHHHHHHcCCEEEE
Q 022573 4 KRMGRKSIVAATGAGQHGV-ATAAACAKLALDCTVFMGTA---DMEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 4 ~~~~~~~~V~~~ssGN~g~-a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~l~~~GA~v~~ 63 (295)
++.|.+++|+++-.-+.|+ +.+.-+...|++++|+..-. +++....-+..|+..|++|+.
T Consensus 108 ~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~h~~~l~~l~~~~~~v~t 171 (174)
T PF00857_consen 108 RKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDACASYSPEAHEAALEELRKRGAEVIT 171 (174)
T ss_dssp HHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEEEBSSHHHHHHHHHHHHHHTSEEE-
T ss_pred cccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhhcCCCHHHHHHHHHHHHhCCCEEEe
Confidence 4456677777655566554 45555566788777765541 333334455667777777764
No 220
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=43.52 E-value=73 Score=31.10 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=30.5
Q ss_pred cEEEEeCCCCh---HHHHHHHHHHHcCCceEEEeeCC-CcccchhhHHHHHHcCCEE
Q 022573 9 KSIVAATGAGQ---HGVATAAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLLGAQV 61 (295)
Q Consensus 9 ~~~V~~~ssGN---~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~l~~~GA~v 61 (295)
+.+|++ +.|| -|..+|..-...|+++.|++|.. ..........+++.+|..+
T Consensus 137 ~VlVlc-GpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAIC-GPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEE-CCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 445554 5666 34455555555799999999874 2211112345677777654
No 221
>PRK12742 oxidoreductase; Provisional
Probab=43.42 E-value=1.6e+02 Score=24.44 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=33.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+.+++.+++|.-|.++|......|.++++..... .+.. ....+..+.+.+.++-
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~-~~~~---~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS-KDAA---ERLAQETGATAVQTDS 60 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC-HHHH---HHHHHHhCCeEEecCC
Confidence 3455556678899999998888999876654322 1111 1123445777666555
No 222
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=43.32 E-value=1.9e+02 Score=24.00 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=40.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHH
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNW 79 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~ 79 (295)
.+++.+.+|.-|.+++......|..++++...+ ++........++.+|.++..+..+. .+...+++++.
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~ 73 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQN-LHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAI 73 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCC-hHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 455556678899999998888998877654332 2211223334566677765555433 33344444443
No 223
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=43.24 E-value=2e+02 Score=24.20 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=39.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc--hhHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~--~~~~~~~~~~~~~~ 81 (295)
+.+++.+++|.-|.++|....+.|.+++++... .+........++..+.++.....+ -.+.....++...+
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~--~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDIT--AERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC--HHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 345555667889999999999899876654422 221122233455556666554443 23344444444443
No 224
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=43.23 E-value=92 Score=26.23 Aligned_cols=66 Identities=20% Similarity=0.078 Sum_probs=41.7
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+++.-|.++|..-.+.|.++++.-...... ......+.+.+|.+++.++-.-++....++++..++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~-~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKL-ADALEELAKEYGAEVIQCDLSDEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHH-HHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHH-HHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhh
Confidence 356788889988889998887776553211 111233556788888777775455555555554444
No 225
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=43.06 E-value=1e+02 Score=26.69 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=25.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
.+++. ++|+.|.-+|...+..+.+++++.+..
T Consensus 143 ~v~Vi-G~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 143 EVAVV-GGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred EEEEE-CCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 44443 579999999999999999999888753
No 226
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=43.04 E-value=38 Score=31.04 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=26.0
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
..+.+|+ ++|-.|.++|+..++.|++++|+=..
T Consensus 7 ~~dViIV--GaG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 7 HTDIAVI--GGGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred CCCEEEE--CcCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 3454444 57999999999999999998887543
No 227
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=42.91 E-value=90 Score=27.44 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=24.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~ 60 (295)
.+++.+.+|..|.+++..|+.+|.++++.... + .+...++.+|++
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~--~----~~~~~~~~~g~~ 193 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLGYEVVASTGK--A----DAADYLKKLGAK 193 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCeEEEEecC--H----HHHHHHHHcCCC
Confidence 44444444777777777777777764433322 1 133455666763
No 228
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=42.42 E-value=89 Score=27.83 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=10.6
Q ss_pred CChHHHHHHHHHHHcCCc
Q 022573 17 AGQHGVATAAACAKLALD 34 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~ 34 (295)
+|..|.++...|+.+|.+
T Consensus 172 ~g~iG~~~~~~a~~~G~~ 189 (333)
T cd08296 172 IGGLGHLAVQYAAKMGFR 189 (333)
T ss_pred CcHHHHHHHHHHHHCCCe
Confidence 455666666666666655
No 229
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=42.32 E-value=1e+02 Score=28.10 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=36.1
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC-cccchhhHHH----HHHcCCEEEEecC
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTAD-MEKQSSKVLL----MKLLGAQVKAVDG 66 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~----l~~~GA~v~~~~~ 66 (295)
+...+-..|.+.|+...++++|+.++++.|+.- +. ..-+.. .+..|+++..+..
T Consensus 157 v~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~--~~~~~~~~~~~~~~g~~~~~~~d 215 (338)
T PRK02255 157 VVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLP--EEHLAIAEENCEVSGGSVLVTDD 215 (338)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEECCCccccC--HHHHHHHHHHHHhcCCeEEEEcC
Confidence 333343367999999999999999999999852 21 111222 2346888876654
No 230
>PRK08589 short chain dehydrogenase; Validated
Probab=42.28 E-value=2.2e+02 Score=24.41 Aligned_cols=70 Identities=17% Similarity=0.007 Sum_probs=40.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc--hhHHHHHHHHHHHhc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVGN 82 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~--~~~~~~~~~~~~~~~ 82 (295)
.++++++++--|.++|..-...|.+++++-.. . ......+.++..|.++..+..+ -.+....++++..++
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIA-E--AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-H--HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 44554666778899988888889887777543 1 1122344555667666544432 233444454544443
No 231
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=42.26 E-value=2.1e+02 Score=24.16 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=40.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchh--HHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK--EASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~--~~~~~~~~~~~~ 81 (295)
+.+++.+++|--|.++|..-...|.+++++... .+..+.....++..+.++..+..+.. +...+++++..+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~--~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARK--AEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 344554667889999998888889987665432 22112223345566777766655432 334344444333
No 232
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=42.21 E-value=39 Score=32.93 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=26.9
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
...+.+|+ ++|-.|.++|+-+++.|++++++=.
T Consensus 5 ~~~DVvII--GGGi~G~~iA~~La~rG~~V~LlEk 37 (546)
T PRK11101 5 QETDVIII--GGGATGAGIARDCALRGLRCILVER 37 (546)
T ss_pred ccccEEEE--CcCHHHHHHHHHHHHcCCeEEEEEC
Confidence 34666666 4799999999999999999888753
No 233
>PRK07890 short chain dehydrogenase; Provisional
Probab=42.14 E-value=2.1e+02 Score=24.06 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=40.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHhc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVGN 82 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~~ 82 (295)
++++.+++|--|.++|......|.+++++... ++..+.....++..|.++..+..+. .+.+..+++...++
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVLAART--AERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 45555677889999999999999987666533 1111112234445566664444432 33444444444333
No 234
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=41.89 E-value=1.8e+02 Score=25.53 Aligned_cols=49 Identities=24% Similarity=0.227 Sum_probs=30.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEe
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV 64 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~ 64 (295)
.+++.+.+|..|.+++..++.+|.+.+++... + .+.+.++.+|++.+..
T Consensus 143 ~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~--~----~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 143 SVLIHAGASGVGTAAAQLAEKYGAATIITTSS--E----EKVDFCKKLAAIILIR 191 (334)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC--H----HHHHHHHHcCCcEEEe
Confidence 34443446888888888888888876553322 2 2344566788764443
No 235
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=41.87 E-value=1e+02 Score=28.22 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=32.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEE
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~ 63 (295)
+.+++.+.+|..|.++...++.+|.+.+++.+ ++ .+...++.+|++.++
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~--s~----~~~~~~~~~G~~~~i 243 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAGANPVAVVS--SE----EKAEYCRALGAEGVI 243 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC--CH----HHHHHHHHcCCCEEE
Confidence 34445444588999999999999988665442 22 244577779986543
No 236
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=41.71 E-value=1.2e+02 Score=27.76 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=38.6
Q ss_pred ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
++..+.+.+++. ++|..+..++..+...+-.-.|++|.-+- ......++..|++++.++-+
T Consensus 41 a~~~g~~~~v~~-~sgt~al~~~l~~~~~~~Gd~Viv~~~t~---~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 41 EQRFGSAKVLLT-PSCTAALEMAALLLDIQPGDEVIMPSYTF---VSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred HHHhCCCeEEEE-CCHHHHHHHHHHHhCCCCCCEEEECCCCc---HHHHHHHHHcCCEEEEEecC
Confidence 344566777775 57888876665543333335777776321 13455788899999998753
No 237
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=41.66 E-value=1e+02 Score=29.89 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=36.1
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEec
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 65 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~ 65 (295)
...+++. ++|.-|.+....|+.+|-. |++-+..+ .++++.+.+||+.+.++
T Consensus 165 g~kVlVi-GaG~iGL~Ai~~Ak~lGA~--V~a~D~~~----~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 165 PAKVLVI-GAGVAGLAAIGAAGSLGAI--VRAFDTRP----EVAEQVESMGAEFLELD 215 (509)
T ss_pred CCEEEEE-CCcHHHHHHHHHHHHCCCE--EEEEeCCH----HHHHHHHHcCCeEEEec
Confidence 4455554 6899999999999999974 44433233 45668899999965443
No 238
>PRK06057 short chain dehydrogenase; Provisional
Probab=41.60 E-value=2e+02 Score=24.27 Aligned_cols=67 Identities=18% Similarity=0.039 Sum_probs=38.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHH
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWV 80 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~ 80 (295)
+.+++.+++|.-|.+++......|.+++++... .... ....+..+.+++.++-.-.+...+.+++..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~--~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDID--PEAG---KAAADEVGGLFVPTDVTDEDAVNALFDTAA 74 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC--HHHH---HHHHHHcCCcEEEeeCCCHHHHHHHHHHHH
Confidence 345555667889999999998999887776432 1111 112233455666665543444444544443
No 239
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=41.50 E-value=43 Score=30.62 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=27.0
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
.+..+.+|+ ++|-.|.++|+..++.|++++|+=..
T Consensus 3 ~~~~dv~Iv--GgG~aGl~~A~~L~~~G~~v~v~E~~ 37 (388)
T PRK07608 3 HMKFDVVVV--GGGLVGASLALALAQSGLRVALLAPR 37 (388)
T ss_pred CccCCEEEE--CcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 344565555 57999999999999999998877543
No 240
>PRK07060 short chain dehydrogenase; Provisional
Probab=41.50 E-value=1.6e+02 Score=24.53 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=34.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
+.+++.+.+|..|..++......|.+++++... ++.. ....+..+.+++.++-.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~--~~~~---~~~~~~~~~~~~~~D~~ 63 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN--AAAL---DRLAGETGCEPLRLDVG 63 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC--HHHH---HHHHHHhCCeEEEecCC
Confidence 445555667889999999999999986665533 2111 11334456777766553
No 241
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=41.48 E-value=86 Score=31.25 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC---------------cccchhhHHHHHHcCCEEEEe
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTAD---------------MEKQSSKVLLMKLLGAQVKAV 64 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~---------------~~~~~~~~~~l~~~GA~v~~~ 64 (295)
+.+.+|+ ++|-.|.+.|+..++.|++++||=.... .......++.++.+|.+++.-
T Consensus 310 ~kkVaII--G~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 310 SEKVAVI--GAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCEEEEE--CcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 4444443 5799999999999999999988843321 001112456778899988643
No 242
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=41.36 E-value=86 Score=28.16 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=27.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~ 63 (295)
.+++. ++|..|......++.+|.+.++++.. + +.|+++++.+||+.+.
T Consensus 172 ~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~~-~----~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 172 RVFVS-GVGPIGCLIVAAVKTLGAAEIVCADV-S----PRSLSLAREMGADKLV 219 (343)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCcEEEEEeC-C----HHHHHHHHHcCCcEEe
Confidence 34443 35777777777777777754443322 1 1345566777776543
No 243
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=41.27 E-value=1.1e+02 Score=28.46 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=27.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
.+.+++. ++|..|..+|...++.|.+++++.+..
T Consensus 137 ~~~vvVi-GgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 137 VENVVII-GGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 3455554 579999999999999999999988653
No 244
>PRK07806 short chain dehydrogenase; Provisional
Probab=41.23 E-value=2.1e+02 Score=23.88 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=34.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+.+++.+.+|.-|.+++......|.+++++....... .+.....++..|.++..+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~ 63 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPR-ANKVVAEIEAAGGRASAVGA 63 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHh-HHHHHHHHHhcCCceEEEEc
Confidence 3445556678899999998888999887765432111 11112234555776655544
No 245
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=41.16 E-value=46 Score=32.12 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=26.3
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
++.+|+ ++|..|.+.|.++++.|++++++.+
T Consensus 212 ~dvvII--GgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 212 YDVLVV--GGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCEEEE--CCCHHHHHHHHHHHHCCCcEEEEec
Confidence 455555 5799999999999999999999965
No 246
>PRK12483 threonine dehydratase; Reviewed
Probab=41.08 E-value=2.8e+02 Score=27.03 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=20.9
Q ss_pred EEecCCchhHHHhhhhhhcCCCceEEEeecCCCC
Q 022573 130 LACVGSGSNALGLFHEFINDEDVRLIGVEAAGFG 163 (295)
Q Consensus 130 vv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~~~ 163 (295)
|+.+++|-+..|++.+.+ ....+++.|-|...+
T Consensus 88 VV~aSaGNha~gvA~aA~-~lGi~~~IvmP~~tp 120 (521)
T PRK12483 88 VITASAGNHAQGVALAAA-RLGVKAVIVMPRTTP 120 (521)
T ss_pred EEEECCCHHHHHHHHHHH-HhCCCEEEEECCCCC
Confidence 456667877777776553 344566677777653
No 247
>PRK08226 short chain dehydrogenase; Provisional
Probab=41.04 E-value=2.2e+02 Score=24.06 Aligned_cols=70 Identities=13% Similarity=0.017 Sum_probs=40.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
+.+++.+++|.-|.++|......|.+++++-.... . ......++..|.++..+..+. .+....++++..+
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~--~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 78 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPE--I-EKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE 78 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH--H-HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 45555567788999999999999998766644321 1 112233444576765544432 2334444444433
No 248
>PLN02527 aspartate carbamoyltransferase
Probab=40.99 E-value=1.3e+02 Score=27.05 Aligned_cols=46 Identities=11% Similarity=-0.020 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHc-CCceEEEeeCCC-cccchhhHHHHHHcCCEEEEecC
Q 022573 19 QHGVATAAACAKL-ALDCTVFMGTAD-MEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 19 N~g~a~A~~a~~~-G~~~~vv~p~~~-~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
|.+.+++.+++++ |+.++++.|+.- +. +...+.++..|.++..+..
T Consensus 164 rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~--~~~~~~~~~~g~~~~~~~d 211 (306)
T PLN02527 164 RTVRSLAYLLAKYEDVKIYFVAPDVVKMK--DDIKDYLTSKGVEWEESSD 211 (306)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCccCCC--HHHHHHHHHcCCEEEEEcC
Confidence 5899999998887 999999999862 22 1223345556777766555
No 249
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=40.92 E-value=1.4e+02 Score=27.11 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEE
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 61 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v 61 (295)
++|..|.+++..++.+|..-++++.. . ..|++.++.+|++-
T Consensus 192 G~g~vG~~~~~~a~~~G~~~Vi~~~~-~----~~~~~~~~~~ga~~ 232 (365)
T cd08277 192 GLGAVGLSAIMGAKIAGASRIIGVDI-N----EDKFEKAKEFGATD 232 (365)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEeC-C----HHHHHHHHHcCCCc
Confidence 35777777777777777642332321 1 12444666677743
No 250
>PRK07576 short chain dehydrogenase; Provisional
Probab=40.68 E-value=2.3e+02 Score=24.17 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=40.6
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--chhHHHHHHHHHHH
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWV 80 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~~~~~~~~~~~~~~ 80 (295)
+..-+.+++.+.+|.-|.+++......|.+++++.... +......+.+...+.+++.+.. .-.+...+++++..
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ--EKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH
Confidence 33334555556678899999988888898876665431 1111122344555666654443 22333444444433
No 251
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=40.65 E-value=44 Score=32.21 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=27.3
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
...+.+|+ ++|-.|.++|+-+++.|+++.++=..
T Consensus 5 ~~~DVvII--GGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 5 ETYDLLVI--GGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CcCCEEEE--CcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 34676666 47999999999999999998887543
No 252
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=40.59 E-value=95 Score=27.85 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=26.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~ 62 (295)
.+++ .++|..|.++...|+.+|...++++... + .|...++.+|++.+
T Consensus 177 ~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~~-~----~~~~~~~~~g~~~v 223 (350)
T cd08256 177 VVVL-AGAGPLGLGMIGAARLKNPKKLIVLDLK-D----ERLALARKFGADVV 223 (350)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcCC-H----HHHHHHHHcCCcEE
Confidence 3444 3457777777777777776654444321 1 23445566676443
No 253
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=40.47 E-value=37 Score=22.22 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHcCCceEEEee
Q 022573 17 AGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
..+++..+++++|..|++|.++.-
T Consensus 9 C~~~a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 9 CGEFAALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eHHHHHHHHHHHHHCCCCeEEEee
Confidence 356899999999999999999864
No 254
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=40.44 E-value=2.1e+02 Score=23.70 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=34.2
Q ss_pred EeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 13 AATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 13 ~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
+.+.+|.-|.++|....+.|.+++++..... +........++..+.++..+..+
T Consensus 3 ItGas~giG~~~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~D 56 (239)
T TIGR01831 3 VTGASRGIGRAIANRLAADGFEICVHYHSGR-SDAESVVSAIQAQGGNARLLQFD 56 (239)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHHcCCeEEEEEcc
Confidence 3356788999999999999998766654321 11122233555667777666553
No 255
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=40.21 E-value=2.9e+02 Score=25.12 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=31.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHH-cCCEEEEecC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKL-LGAQVKAVDG 66 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~-~GA~v~~~~~ 66 (295)
++++. ++|.-|...+..++.+|-..+|++.. ++ .++++.+. .|++++..+.
T Consensus 171 ~V~V~-GaGpIGLla~~~a~~~Ga~~Viv~d~-~~----~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVV-GAGPIGLLAIALAKLLGASVVIVVDR-SP----ERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCceEEEeCC-CH----HHHHHHHHhCCCeEeecCc
Confidence 45553 57888888888888888777777733 22 23445544 5666554444
No 256
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=40.17 E-value=3.2e+02 Score=25.62 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=19.0
Q ss_pred cCCcEEEEeCCCChHHHH--HHHHHHHcCCceEEEe
Q 022573 6 MGRKSIVAATGAGQHGVA--TAAACAKLALDCTVFM 39 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a--~A~~a~~~G~~~~vv~ 39 (295)
.|.+.+++.++++..|.| +|.+. ..|...+++.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 344555665555556666 45555 5777766654
No 257
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=40.16 E-value=48 Score=28.74 Aligned_cols=33 Identities=30% Similarity=0.244 Sum_probs=28.0
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+..+++. ++|.-+.++|-.++.+|++++++=|.
T Consensus 100 ~~~L~If-GaG~va~~la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 100 APHVVLF-GAGHVGRALVRALAPLPCRVTWVDSR 132 (246)
T ss_pred CCEEEEE-CCcHHHHHHHHHHhcCCCEEEEEeCC
Confidence 3566775 68999999999999999999988665
No 258
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=40.12 E-value=1.1e+02 Score=28.16 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=26.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+.+++. ++|..|.-+|...+.+|.+++++.+.
T Consensus 145 ~~vvVi-GgG~ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 145 RSVVIV-GAGTIGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred CeEEEE-CCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 344544 57999999999999999999998765
No 259
>PRK06198 short chain dehydrogenase; Provisional
Probab=40.07 E-value=2.3e+02 Score=23.90 Aligned_cols=71 Identities=23% Similarity=0.206 Sum_probs=40.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHH
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWV 80 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~ 80 (295)
+.+++.+.+|.-|..++......|.+.++++... .+........++..|.++..+..+. .+...++++...
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRN-AEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAAD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC-HHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 4455556678899999999999999844444332 1111122334566788876554433 333444444433
No 260
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=40.06 E-value=1e+02 Score=30.03 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHcC-CceEEEeeCCC-cccchhhHHHHHHcCCEEEEecC
Q 022573 18 GQHGVATAAACAKLA-LDCTVFMGTAD-MEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 18 GN~g~a~A~~a~~~G-~~~~vv~p~~~-~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+|.+.|+...++++| +.++++.|++- ++ ...+..++..|+.+..+..
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p--~~~~~~a~~~G~~v~i~~d 234 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAMP--EHYVEKMKKNGFEVRIFSS 234 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccCC--HHHHHHHHHcCCeEEEEcC
Confidence 689999999999998 99999999863 22 2233455668988877665
No 261
>PRK07825 short chain dehydrogenase; Provisional
Probab=39.81 E-value=2.2e+02 Score=24.33 Aligned_cols=67 Identities=18% Similarity=0.020 Sum_probs=37.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcC-CEEEEecCchhHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLG-AQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~G-A~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
.+++.+++|.-|.++|......|.+++++... ++... ...+..+ .+++.++-.-.+...+++++..+
T Consensus 7 ~ilVtGasggiG~~la~~l~~~G~~v~~~~r~--~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 7 VVAITGGARGIGLATARALAALGARVAIGDLD--EALAK---ETAAELGLVVGGPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEECC--HHHHH---HHHHHhccceEEEccCCCHHHHHHHHHHHHH
Confidence 45555667889999998888889886665432 21111 1223334 55555554333444455444443
No 262
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=39.73 E-value=3.2e+02 Score=25.52 Aligned_cols=55 Identities=18% Similarity=0.076 Sum_probs=36.5
Q ss_pred EEeCCCC-hHHHHHHHHHHHcCCceEEEeeC-CCc-ccchhhHHHHHHcCC-EEEEecC
Q 022573 12 VAATGAG-QHGVATAAACAKLALDCTVFMGT-ADM-EKQSSKVLLMKLLGA-QVKAVDG 66 (295)
Q Consensus 12 V~~~ssG-N~g~a~A~~a~~~G~~~~vv~p~-~~~-~~~~~~~~~l~~~GA-~v~~~~~ 66 (295)
|.+.|+| .+...+.+.-.+.++.++.|.-+ +.+ +....-.+....+|| +++.++.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~ 59 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDA 59 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecch
Confidence 3456777 58899999999999999988776 322 222334446688999 9998887
No 263
>PRK06179 short chain dehydrogenase; Provisional
Probab=39.60 E-value=2.1e+02 Score=24.39 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=38.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
.+++++++|.-|.++|......|.++++....... .....+.+++.++-.-.+...++++...++
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~--------~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRNPAR--------AAPIPGVELLELDVTDDASVQAAVDEVIAR 70 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhh--------ccccCCCeeEEeecCCHHHHHHHHHHHHHh
Confidence 45555667889999999888899987766543111 111235666666654344455555544443
No 264
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.59 E-value=2.2e+02 Score=23.67 Aligned_cols=68 Identities=22% Similarity=0.163 Sum_probs=39.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHH
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNW 79 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~ 79 (295)
.+++.+++|--|.+++......|.+++++... .++.....+.++..|+++.....+. .+...++++..
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKGAKLALIDLN--QEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 44555667889999999999899886665433 2212223345566688775554432 23344444433
No 265
>PRK06847 hypothetical protein; Provisional
Probab=39.57 E-value=51 Score=29.95 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=24.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
.+++. ++|-.|.++|...++.|++++|+=
T Consensus 6 ~V~IV-GaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 6 KVLIV-GGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred eEEEE-CCCHHHHHHHHHHHhCCCCEEEEe
Confidence 34554 589999999999999999998874
No 266
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=39.49 E-value=51 Score=28.60 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=24.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
+.+|+ ++|-.|.+.|..+++.|+++++|=.
T Consensus 2 dvvII--G~G~aGl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 2 DVIII--GAGPAGLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred cEEEE--CCCHHHHHHHHHHHHCCCCEEEEec
Confidence 34444 5799999999999999999888764
No 267
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=39.44 E-value=1.3e+02 Score=26.78 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=11.4
Q ss_pred CChHHHHHHHHHHHcCCceEE
Q 022573 17 AGQHGVATAAACAKLALDCTV 37 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~v 37 (295)
++..|.+++..|+.+|+++++
T Consensus 175 ~~~vg~~~~~~a~~~g~~v~~ 195 (341)
T cd08297 175 GGGLGHLGVQYAKAMGLRVIA 195 (341)
T ss_pred CchHHHHHHHHHHHCCCeEEE
Confidence 344666666666666654333
No 268
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.36 E-value=1.1e+02 Score=29.14 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=25.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
++.+++. ++|..|.-+|..-+++|.+++++-.
T Consensus 174 ~~~vvII-GgG~ig~E~A~~l~~~G~~Vtlie~ 205 (466)
T PRK06115 174 PKHLVVI-GAGVIGLELGSVWRRLGAQVTVVEY 205 (466)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCeEEEEeC
Confidence 4555554 5799999999999999999998754
No 269
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=39.24 E-value=1.1e+02 Score=26.47 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=12.2
Q ss_pred CChHHHHHHHHHHHcCCceEE
Q 022573 17 AGQHGVATAAACAKLALDCTV 37 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~v 37 (295)
+|..|.++...|+.+|.+++.
T Consensus 152 ~g~~g~~~~~~a~~~g~~v~~ 172 (320)
T cd08243 152 TSSVGLAALKLAKALGATVTA 172 (320)
T ss_pred CChHHHHHHHHHHHcCCEEEE
Confidence 456666666666666655333
No 270
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=39.23 E-value=1.2e+02 Score=27.55 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHcCCceEEEeeCCCcccchhhHH----HHHHcCCEEEEecC
Q 022573 19 QHGVATAAACAKLALDCTVFMGTADMEKQSSKVL----LMKLLGAQVKAVDG 66 (295)
Q Consensus 19 N~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~----~l~~~GA~v~~~~~ 66 (295)
|.+.|+...++++|+.++++.|+.-... +..++ ..+..|.++..++.
T Consensus 167 ~v~~Sl~~~~~~~g~~v~~~~P~~~~~~-~~~~~~~~~~~~~~g~~~~~~~d 217 (331)
T PRK02102 167 NMANSLMVGGAKLGMDVRICAPKELWPE-EELVALAREIAKETGAKITITED 217 (331)
T ss_pred cHHHHHHHHHHHcCCEEEEECCcccccC-HHHHHHHHHHHHHcCCeEEEEcC
Confidence 7999999999999999999999862111 11121 23457888776655
No 271
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=39.21 E-value=1.5e+02 Score=21.59 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=34.4
Q ss_pred EEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchh
Q 022573 12 VAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK 69 (295)
Q Consensus 12 V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~ 69 (295)
|+. +.|+.|..++-.-+..+.+++++-.. + .+.+.++..|.+++.-+..-.
T Consensus 2 vI~-G~g~~~~~i~~~L~~~~~~vvvid~d--~----~~~~~~~~~~~~~i~gd~~~~ 52 (116)
T PF02254_consen 2 VII-GYGRIGREIAEQLKEGGIDVVVIDRD--P----ERVEELREEGVEVIYGDATDP 52 (116)
T ss_dssp EEE-S-SHHHHHHHHHHHHTTSEEEEEESS--H----HHHHHHHHTTSEEEES-TTSH
T ss_pred EEE-cCCHHHHHHHHHHHhCCCEEEEEECC--c----HHHHHHHhcccccccccchhh
Confidence 443 57899999999999977677776643 2 345577888888777665433
No 272
>PRK09291 short chain dehydrogenase; Provisional
Probab=38.99 E-value=94 Score=26.25 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=24.7
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+++.+++|..|.+++......|.+++++...
T Consensus 5 vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 5 ILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4455677999999999999999988776653
No 273
>PRK06185 hypothetical protein; Provisional
Probab=38.95 E-value=51 Score=30.37 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=27.9
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
....+.+|+ ++|-.|.++|...++.|++++|+=..
T Consensus 4 ~~~~dV~Iv--GgG~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 4 VETTDCCIV--GGGPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred cccccEEEE--CCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 345666665 57999999999999999999887643
No 274
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=38.94 E-value=1.2e+02 Score=26.43 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=26.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~ 62 (295)
.+++.+.+|..|.++...|+.+|.+++++.+. . .+...++.+|++-+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~--~----~~~~~~~~~g~~~~ 195 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTGK--E----EQADYLKSLGASEV 195 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeCC--H----HHHHHHHhcCCcEE
Confidence 44444444777777777777777774333322 1 23345566776433
No 275
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.93 E-value=2.3e+02 Score=23.65 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=35.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
.+++.+.+|.-|..++..-...|.+++++...+. +..+.....++..|.++..+..+
T Consensus 6 ~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 6 VALVTGSSRGIGKAIALRLAEEGYDIAVNYARSR-KAAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCeEEEEEcC
Confidence 4555566788999999999999988776443322 11122233566678887665543
No 276
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=38.85 E-value=66 Score=27.07 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=28.1
Q ss_pred HHHHHHHHHhC--CCCCEEEEecC-CchhHHHhhhhh----hc-CCCceEEEeecCC
Q 022573 113 ETRKQAMEKWG--GKPDVLLACVG-SGSNALGLFHEF----IN-DEDVRLIGVEAAG 161 (295)
Q Consensus 113 e~~~ei~~q~~--~~~d~vvv~vG-~Gg~~~G~~~~~----~~-~~~~~vi~ve~~~ 161 (295)
++.++|.++++ ..+|.|++..| +|||=+|+.-.+ +. .|...++.+...+
T Consensus 109 ~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP 165 (216)
T PF00091_consen 109 EILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILP 165 (216)
T ss_dssp HHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-
T ss_pred ccccccchhhccccccccceecccccceeccccccccchhhhccccccceeeccccc
Confidence 33344444441 35788877777 666777775444 22 5666666665554
No 277
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=38.68 E-value=44 Score=27.34 Aligned_cols=131 Identities=19% Similarity=0.194 Sum_probs=61.1
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHH-cCCEEEEecCchhHHHHHHHHHHHhccCCceeeeCccc
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKL-LGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVV 94 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~-~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (295)
++|..|.++|..+...|++++++-+.... ...-...++. +...+ -.+...+. .. +...++ --+. ....
T Consensus 6 GaG~mG~~iA~~~a~~G~~V~l~d~~~~~--l~~~~~~i~~~l~~~~--~~~~~~~~--~~-~~~~~~---i~~~-~dl~ 74 (180)
T PF02737_consen 6 GAGTMGRGIAALFARAGYEVTLYDRSPEA--LERARKRIERLLDRLV--RKGRLSQE--EA-DAALAR---ISFT-TDLE 74 (180)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEE-SSHHH--HHHHHHHHHHHHHHHH--HTTTTTHH--HH-HHHHHT---EEEE-SSGG
T ss_pred cCCHHHHHHHHHHHhCCCcEEEEECChHH--HHhhhhHHHHHHhhhh--hhccchhh--hh-hhhhhh---cccc-cCHH
Confidence 57999999999999999999999876211 0100111111 10000 00111111 01 111221 1111 1111
Q ss_pred CCCCCchhhhhhhhhhhHHHHHHHHHHhC--CCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeecCC
Q 022573 95 GPHPCPIMVREFQSIIGKETRKQAMEKWG--GKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAG 161 (295)
Q Consensus 95 ~~~p~~~~~~~g~~~~~~e~~~ei~~q~~--~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~ 161 (295)
..... +++++--. --.++-++++.++. ..+|.|+.+-.++=.++=++..+. .+-|+++.....
T Consensus 75 ~~~~a-dlViEai~-E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~--~p~R~ig~Hf~~ 139 (180)
T PF02737_consen 75 EAVDA-DLVIEAIP-EDLELKQELFAELDEICPPDTILASNTSSLSISELAAALS--RPERFIGMHFFN 139 (180)
T ss_dssp GGCTE-SEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSS--TGGGEEEEEE-S
T ss_pred HHhhh-heehhhcc-ccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccC--cCceEEEEeccc
Confidence 00111 12222110 12556666766665 358999999988888888877653 445688876665
No 278
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=38.66 E-value=90 Score=29.38 Aligned_cols=46 Identities=22% Similarity=0.170 Sum_probs=32.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~ 62 (295)
++++ .+.|.-|..+|..++.+|.++++ +.. ++ .+....+.+|++++
T Consensus 204 tVvV-iG~G~IG~~va~~ak~~Ga~ViV-~d~-d~----~R~~~A~~~G~~~~ 249 (413)
T cd00401 204 VAVV-AGYGDVGKGCAQSLRGQGARVIV-TEV-DP----ICALQAAMEGYEVM 249 (413)
T ss_pred EEEE-ECCCHHHHHHHHHHHHCCCEEEE-EEC-Ch----hhHHHHHhcCCEEc
Confidence 3444 36899999999999999997555 322 22 23456778899765
No 279
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=38.58 E-value=2.8e+02 Score=24.43 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=39.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC-cccchhhHHHHHHcCCEEEEecCch
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTAD-MEKQSSKVLLMKLLGAQVKAVDGCF 68 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~l~~~GA~v~~~~~~~ 68 (295)
+...+|| +.|+.-|.++|..-++.|..++++....+ .+ .-..+.-+.+|.+|...+-|+
T Consensus 6 ~~~~lIT-GASsGIG~~~A~~lA~~g~~liLvaR~~~kL~--~la~~l~~~~~v~v~vi~~DL 65 (265)
T COG0300 6 GKTALIT-GASSGIGAELAKQLARRGYNLILVARREDKLE--ALAKELEDKTGVEVEVIPADL 65 (265)
T ss_pred CcEEEEE-CCCchHHHHHHHHHHHCCCEEEEEeCcHHHHH--HHHHHHHHhhCceEEEEECcC
Confidence 3444454 55688999999999999999999987632 11 112234455677876666654
No 280
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.56 E-value=3.1e+02 Score=25.72 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=42.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~ 81 (295)
.+++.+.+|.-|.++|....+.|.+++++-.....+ ......+..+++++.++-.-.+....+++...+
T Consensus 212 ~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~---~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 280 (450)
T PRK08261 212 VALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGE---ALAAVANRVGGTALALDITAPDAPARIAEHLAE 280 (450)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHH---HHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 455556668899999999999999877764432211 112234456777777776444455555544443
No 281
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.51 E-value=2.9e+02 Score=24.73 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=38.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcC-CEEEEecC-chhHHHHHHHHHHHhc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLG-AQVKAVDG-CFKEASSEAIRNWVGN 82 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~G-A~v~~~~~-~~~~~~~~~~~~~~~~ 82 (295)
..++++++++-.|+++|.--++.|. ++++.+-.+.........++..| +.-..|+- +.+|.. +...+..++
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~-~~a~~Vk~e 111 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIY-RLAKKVKKE 111 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHH-HHHHHHHHh
Confidence 3445545444599999999999988 44455421111123445666667 44456665 344443 333444444
No 282
>PRK07677 short chain dehydrogenase; Provisional
Probab=38.46 E-value=2.4e+02 Score=23.72 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=38.0
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--chhHHHHHHHHHHHh
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVG 81 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~~~~~~~~~~~~~~~ 81 (295)
+++.+.+|.-|.++|......|.+++++... ....+.....++..+.+++.... .-.+...+++++..+
T Consensus 4 ~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 4 VIITGGSSGMGKAMAKRFAEEGANVVITGRT--KEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4444667889999999999999976665432 11111122234445666655443 223344444444433
No 283
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=38.46 E-value=43 Score=28.45 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhC---CCCCEEEEecCCchhHHHh------hhhhhcCCCceEEEeecCCC
Q 022573 111 GKETRKQAMEKWG---GKPDVLLACVGSGSNALGL------FHEFINDEDVRLIGVEAAGF 162 (295)
Q Consensus 111 ~~e~~~ei~~q~~---~~~d~vvv~vG~Gg~~~G~------~~~~~~~~~~~vi~ve~~~~ 162 (295)
-.....++..+.+ .++|.|+|+.|=|+ ++|+ +++|....+.++++|.....
T Consensus 41 l~~~i~~ll~~~~~~~~dld~iav~~GPGS-FTGlRIG~~~AkgLA~~l~iplvgvssL~~ 100 (220)
T COG1214 41 LMPMIDELLKEAGLSLQDLDAIAVAKGPGS-FTGLRIGVAFAKGLALALNIPLVGVSSLEA 100 (220)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEccCCCc-ccchhhHHHHHHHHHHHcCCCEEEeCHHHH
Confidence 3344455555443 35899999999886 4555 45554588899999976653
No 284
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=38.45 E-value=1.2e+02 Score=28.80 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=36.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCc---------------ccchhhHHHHHHcCCEEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADM---------------EKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~---------------~~~~~~~~~l~~~GA~v~~ 63 (295)
.+++. ++|-.|.+.|...++.|.++++|-..... +.....++.++.+|.+++.
T Consensus 145 ~VvII-GaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 145 KVAVV-GSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred EEEEE-CcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 34443 57999999999999999999988543111 0011234567888988753
No 285
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=38.45 E-value=1.1e+02 Score=27.39 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEE
Q 022573 17 AGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 61 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v 61 (295)
+|..|.++...|+.+|.+.++++.. +. .|++.++.+|++-
T Consensus 169 ~g~vG~~~~~~a~~~G~~~v~~~~~-~~----~~~~~~~~~Ga~~ 208 (347)
T PRK10309 169 AGTIGLLAIQCAVALGAKSVTAIDI-NS----EKLALAKSLGAMQ 208 (347)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECC-CH----HHHHHHHHcCCce
Confidence 5667777777777777654333321 11 2344556666643
No 286
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=38.27 E-value=1.3e+02 Score=26.84 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=25.4
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEE
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 61 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v 61 (295)
+++.+.+|..|.+++..|+.+|.+++++... . +...++.+|++.
T Consensus 181 vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~------~-~~~~~~~~g~~~ 224 (350)
T cd08274 181 VLVTGASGGVGSALVQLAKRRGAIVIAVAGA------A-KEEAVRALGADT 224 (350)
T ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc------h-hhHHHHhcCCeE
Confidence 3333434777777777888888775444321 1 233556677753
No 287
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=38.27 E-value=1.3e+02 Score=27.58 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
+.+++. ++|+.|.-+|...+..|.+++++.+..
T Consensus 142 ~~vvVi-GgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 142 QRVLVV-GGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred CeEEEE-CCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 344443 579999999999999999999998753
No 288
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=38.15 E-value=1.3e+02 Score=26.82 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=8.0
Q ss_pred ChHHHHHHHHHHHcCC
Q 022573 18 GQHGVATAAACAKLAL 33 (295)
Q Consensus 18 GN~g~a~A~~a~~~G~ 33 (295)
|..|.++...|+.+|.
T Consensus 165 g~vG~~aiqlAk~~G~ 180 (345)
T cd08293 165 GACGSLAGQIGRLLGC 180 (345)
T ss_pred cHHHHHHHHHHHHcCC
Confidence 4455554445555554
No 289
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=38.06 E-value=1.1e+02 Score=27.02 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=7.9
Q ss_pred ChHHHHHHHHHHHcCCc
Q 022573 18 GQHGVATAAACAKLALD 34 (295)
Q Consensus 18 GN~g~a~A~~a~~~G~~ 34 (295)
|..|.+++..|+.+|.+
T Consensus 165 g~vg~~~~q~a~~~G~~ 181 (319)
T cd08242 165 GKLGLLIAQVLALTGPD 181 (319)
T ss_pred CHHHHHHHHHHHHcCCe
Confidence 44444444444444444
No 290
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.01 E-value=2.5e+02 Score=23.82 Aligned_cols=112 Identities=14% Similarity=0.078 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeeeCcccCC-CC
Q 022573 20 HGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGP-HP 98 (295)
Q Consensus 20 ~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p 98 (295)
...++.-.++.+|+.++++....++......++.+...+++.+.+.....+.....++++.+. .-+..+.+..... .+
T Consensus 17 ~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~-~iPvV~~~~~~~~~~~ 95 (282)
T cd06318 17 LTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAA-GVPVVVVDSSINLEAG 95 (282)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHC-CCCEEEecCCCCCCcC
Confidence 455677788899999887665444333334566777888886666442222222333433332 2233333321111 01
Q ss_pred CchhhhhhhhhhhHHHHHHHHHHhCCC-CCEEEEe
Q 022573 99 CPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLAC 132 (295)
Q Consensus 99 ~~~~~~~g~~~~~~e~~~ei~~q~~~~-~d~vvv~ 132 (295)
...++..-+...+...+..+.++++.+ -+.+++.
T Consensus 96 ~~~~v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~ 130 (282)
T cd06318 96 VVTQVQSSNAKNGNLVGEWVVGELGDKPMKIILLS 130 (282)
T ss_pred eEEEEecCcHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 111222223334566667676656543 3455554
No 291
>PRK07791 short chain dehydrogenase; Provisional
Probab=37.96 E-value=2.7e+02 Score=24.19 Aligned_cols=73 Identities=15% Similarity=0.016 Sum_probs=40.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC-------CcccchhhHHHHHHcCCEEEEecCc--hhHHHHHHHHHHH
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA-------DMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWV 80 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~-------~~~~~~~~~~~l~~~GA~v~~~~~~--~~~~~~~~~~~~~ 80 (295)
.+++++.++--|.++|....+.|.+++++.... ..+........++..|.++..+..+ -.+...+++++..
T Consensus 8 ~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 87 (286)
T PRK07791 8 VVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAAV 87 (286)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 444446667788999988888998877654321 0011122334555667776555432 2333444555544
Q ss_pred hc
Q 022573 81 GN 82 (295)
Q Consensus 81 ~~ 82 (295)
++
T Consensus 88 ~~ 89 (286)
T PRK07791 88 ET 89 (286)
T ss_pred Hh
Confidence 44
No 292
>PRK09126 hypothetical protein; Provisional
Probab=37.81 E-value=51 Score=30.19 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=24.6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
.+.+|+ ++|-.|.++|.+.++.|++++|+=
T Consensus 4 ~dviIv--GgG~aGl~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 4 SDIVVV--GAGPAGLSFARSLAGSGLKVTLIE 33 (392)
T ss_pred ccEEEE--CcCHHHHHHHHHHHhCCCcEEEEe
Confidence 444444 579999999999999999998874
No 293
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.67 E-value=1.1e+02 Score=29.35 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=29.4
Q ss_pred cEEEEeCCCCh---HHHHHHHHHHHcCCceEEEeeCCC-cccchhhHHHHHHcCCEE
Q 022573 9 KSIVAATGAGQ---HGVATAAACAKLALDCTVFMGTAD-MEKQSSKVLLMKLLGAQV 61 (295)
Q Consensus 9 ~~~V~~~ssGN---~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~l~~~GA~v 61 (295)
+.+|++ +.|| =|..+|..-+..|+++.|+++... +.........++.+|..+
T Consensus 61 ~VlVlc-G~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 61 RVLALC-GPGNNGGDGLVAARHLHHFGYKPSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 445554 5666 344555555557999999998642 111122344566666544
No 294
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=37.64 E-value=1.1e+02 Score=29.07 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=36.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC---------c------ccchhhHHHHHHcCCEEEE
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTAD---------M------EKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~---------~------~~~~~~~~~l~~~GA~v~~ 63 (295)
+.+ +++. ++|-.|.+.|..+++.|++++++-.... + +......+.++.+|.+++.
T Consensus 141 ~~~-V~II-G~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 141 GKR-VAVI-GAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CCe-EEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 344 4443 5799999999999999999888742211 0 0011234577889988753
No 295
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=37.62 E-value=52 Score=29.91 Aligned_cols=30 Identities=30% Similarity=0.266 Sum_probs=24.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
+.+|+ ++|-.|.++|+..++.|.+++|+=.
T Consensus 2 dvvII--GaGi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 2 DVIVV--GAGIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred cEEEE--CCCHHHHHHHHHHHHCCCeEEEEec
Confidence 44454 4799999999999999999887644
No 296
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=37.53 E-value=48 Score=26.98 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=17.6
Q ss_pred CCChHHHHHHHHHHHcCCc-eEEEee
Q 022573 16 GAGQHGVATAAACAKLALD-CTVFMG 40 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~-~~vv~p 40 (295)
++|-.|.++|+.+++.|++ ++|+=+
T Consensus 4 GaG~aGl~~a~~l~~~g~~~v~v~e~ 29 (203)
T PF13738_consen 4 GAGPAGLAAAAHLLERGIDPVVVLER 29 (203)
T ss_dssp --SHHHHHHHHHHHHTT---EEEEES
T ss_pred CcCHHHHHHHHHHHhCCCCcEEEEeC
Confidence 4799999999999999998 455443
No 297
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=37.49 E-value=2.1e+02 Score=25.96 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=44.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHHc--CCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHH--HHHHHHHHHhccC
Q 022573 9 KSIVAATGAGQHGVATAAACAKL--ALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEA--SSEAIRNWVGNLE 84 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~--G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~--~~~~~~~~~~~~~ 84 (295)
-..++ +++|..|.-.| .++.+ |=++.++.-..-. +.-.++.+.+||+|..++.++.+. .+...+.+++..+
T Consensus 69 ~tf~i-sgsGh~g~E~a-l~N~lePgd~vLv~~~G~wg---~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p 143 (385)
T KOG2862|consen 69 QTFVI-SGSGHSGWEAA-LVNLLEPGDNVLVVSTGTWG---QRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKP 143 (385)
T ss_pred ceEEE-ecCCcchHHHH-HHhhcCCCCeEEEEEechHH---HHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCC
Confidence 34444 56676655444 44443 4445544443211 123568899999999998765433 2333355666666
Q ss_pred CceeeeC
Q 022573 85 KSYYLTG 91 (295)
Q Consensus 85 ~~~~~~~ 91 (295)
+.+|+..
T Consensus 144 ~~vfv~h 150 (385)
T KOG2862|consen 144 KAVFVTH 150 (385)
T ss_pred ceEEEEe
Confidence 7777753
No 298
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=37.46 E-value=2.5e+02 Score=23.65 Aligned_cols=57 Identities=21% Similarity=0.103 Sum_probs=35.0
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
.+.+++.+++|.-|.+++......|.+++++..... ..+.....++..|.++..+..
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 67 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD--AANHVVDEIQQLGGQAFACRC 67 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEc
Confidence 345555566788999999888889988776654321 111122345556777655444
No 299
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=37.38 E-value=51 Score=32.83 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=25.9
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
..+.+|+ ++|-.|.++|+-+++.|+++.++=.
T Consensus 71 ~~DVvVI--GGGi~Ga~~A~~lA~rGl~V~LvE~ 102 (627)
T PLN02464 71 PLDVLVV--GGGATGAGVALDAATRGLRVGLVER 102 (627)
T ss_pred ccCEEEE--CCCHHHHHHHHHHHhCCCEEEEEec
Confidence 3566665 4799999999999999999777643
No 300
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=37.33 E-value=1.7e+02 Score=26.98 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHcCCceEEEeeCCC-cccchhhH----HHHHHcCCEEEEecC
Q 022573 19 QHGVATAAACAKLALDCTVFMGTAD-MEKQSSKV----LLMKLLGAQVKAVDG 66 (295)
Q Consensus 19 N~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~----~~l~~~GA~v~~~~~ 66 (295)
|.+.|+..+++++|+.++++.|++- +. +..+ +..+..|.++..+..
T Consensus 188 ~v~~Sl~~~~~~~G~~v~~~~P~~~~~~--~~~~~~a~~~~~~~g~~~~~~~d 238 (357)
T TIGR03316 188 SVPQGIIGLMTRFGMDVTLAHPEGYHLL--PEVIEVAKKNAAENGGKFNIVNS 238 (357)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCcccCC--HHHHHHHHHHHHHcCCeEEEEcC
Confidence 5778999999999999999999852 21 1111 134567888876655
No 301
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=37.14 E-value=53 Score=31.06 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=25.5
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
.++.+|+ ++|-.|.+.|+.+++.|.+++|+=
T Consensus 4 ~~DVvVV--G~G~aGl~AA~~aa~~G~~V~vlE 34 (466)
T PRK08274 4 MVDVLVI--GGGNAALCAALAAREAGASVLLLE 34 (466)
T ss_pred cCCEEEE--CCCHHHHHHHHHHHHCCCeEEEEe
Confidence 4676666 479999999999999999888764
No 302
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.09 E-value=2.4e+02 Score=23.89 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=23.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHcCCceEEEee
Q 022573 7 GRKSIVAATGA--GQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 7 ~~~~~V~~~ss--GN~g~a~A~~a~~~G~~~~vv~p 40 (295)
++..+|+ +++ +.-|.++|....+.|.++++.-.
T Consensus 7 ~k~~lIt-Gas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 7 GKKIVVM-GVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CCEEEEe-CCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 3444444 444 57999999999999998776543
No 303
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=37.08 E-value=43 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=9.5
Q ss_pred cccCCcEEEEeCCCChHHHHHH
Q 022573 4 KRMGRKSIVAATGAGQHGVATA 25 (295)
Q Consensus 4 ~~~~~~~~V~~~ssGN~g~a~A 25 (295)
++.+.+.+|+.+.+|++++.+|
T Consensus 13 ~~~~ak~Ivv~T~sG~ta~~is 34 (117)
T PF02887_consen 13 EDLNAKAIVVFTESGRTARLIS 34 (117)
T ss_dssp HHHTESEEEEE-SSSHHHHHHH
T ss_pred HhcCCCEEEEECCCchHHHHHH
Confidence 3344444444444455544443
No 304
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.03 E-value=2.4e+02 Score=23.28 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=35.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
.+++.+++|..|.+++......|.+++++....... .....+.++..+.++..+..+
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D 64 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEA-AEELVEAVEALGRRAQAVQAD 64 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHHHhcCCceEEEECC
Confidence 455556779999999999999999876666553221 111223444556666555443
No 305
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=37.02 E-value=46 Score=31.27 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=22.3
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+|+. ++|-.|.+.|..|++.|.++.++=+.
T Consensus 2 VVVv-GgG~aG~~AAi~AAr~G~~VlLiE~~ 31 (428)
T PF12831_consen 2 VVVV-GGGPAGVAAAIAAARAGAKVLLIEKG 31 (428)
T ss_dssp EEEE---SHHHHHHHHHHHHTTS-EEEE-SS
T ss_pred EEEE-CccHHHHHHHHHHHHCCCEEEEEECC
Confidence 3443 57999999999999999999998765
No 306
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.77 E-value=1.4e+02 Score=25.78 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=14.2
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCce
Q 022573 11 IVAATGAGQHGVATAAACAKLALDC 35 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~ 35 (295)
+++.+.+|..|.+++..|+.+|.+.
T Consensus 136 vli~g~~~~~g~~~~~~a~~~g~~v 160 (305)
T cd08270 136 VLVTGASGGVGRFAVQLAALAGAHV 160 (305)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCEE
Confidence 3333334666666666666666653
No 307
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=36.75 E-value=54 Score=32.71 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=26.3
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
..++.+|+ ++|..|.+.|..++..|.+++|+-
T Consensus 34 ~~~DVlVV--G~G~AGl~AAi~Aae~G~~Vilie 65 (640)
T PRK07573 34 RKFDVIVV--GTGLAGASAAATLGELGYNVKVFC 65 (640)
T ss_pred cccCEEEE--CccHHHHHHHHHHHHcCCcEEEEe
Confidence 44576665 479999999999999999998874
No 308
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=36.68 E-value=1.1e+02 Score=27.88 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=10.5
Q ss_pred CChHHHHHHHHHHHcCCc
Q 022573 17 AGQHGVATAAACAKLALD 34 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~ 34 (295)
+|..|..++..++.+|.+
T Consensus 200 ~G~vG~~a~~lak~~G~~ 217 (371)
T cd08281 200 LGGVGLSALLGAVAAGAS 217 (371)
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 455666666666666653
No 309
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=36.57 E-value=1.2e+02 Score=27.99 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=32.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEe
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV 64 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~ 64 (295)
+.+++.+.+|..|.+++..|+.+|.+.+++.+ +. .+...++.+|+..+.-
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~--~~----~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAGGGNPVAVVS--SP----EKAEYCRELGAEAVID 240 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcC--CH----HHHHHHHHcCCCEEec
Confidence 34444444588999999999999988655432 22 2344677789865543
No 310
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=36.48 E-value=59 Score=31.27 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=26.7
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
..+.+|+ ++|-.|.++|+-+++.|+++.++=..
T Consensus 6 ~~DVvII--GGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 6 TYDLFVI--GGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred ccCEEEE--CCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 3566666 47999999999999999998877543
No 311
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=36.45 E-value=2.6e+02 Score=23.54 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=24.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
.+++.+++|.-|.++|..-...|.+++++-.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 3555567789999999998889988766653
No 312
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=36.42 E-value=2.6e+02 Score=23.50 Aligned_cols=71 Identities=18% Similarity=0.072 Sum_probs=40.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc--hhHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~--~~~~~~~~~~~~~~ 81 (295)
+++++.+.+|.-|.++|......|.+++++.... +....-...++..|.++..+..+ -.+....++++..+
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNA--ATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4455556678899999998888999877665432 11112223455567655444432 23334444444433
No 313
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=36.39 E-value=1.3e+02 Score=28.84 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=36.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC---------------cccchhhHHHHHHcCCEEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTAD---------------MEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~---------------~~~~~~~~~~l~~~GA~v~~ 63 (295)
.+++. ++|-.|.+.|...++.|+++++|-.... .+......+.++.+|.+++.
T Consensus 145 ~V~II-GaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 145 KVAVV-GSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred EEEEE-CCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 44443 5799999999999999999999843311 11122234567888988863
No 314
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=36.36 E-value=1.5e+02 Score=26.97 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHcCCceEEEeeCCCcccchhhH----HHHHHcCCEEEEecC
Q 022573 19 QHGVATAAACAKLALDCTVFMGTADMEKQSSKV----LLMKLLGAQVKAVDG 66 (295)
Q Consensus 19 N~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~----~~l~~~GA~v~~~~~ 66 (295)
|.+.|+...++++|+.++++.|+.-... ...+ ...+..|+++..++.
T Consensus 168 ~v~~S~~~~~~~~G~~v~~~~P~~~~~~-~~~~~~~~~~~~~~g~~~~~~~d 218 (334)
T PRK12562 168 NMGNSMLEAAALTGLDLRLVAPQACWPE-ASLVAECSALAQKHGGKITLTED 218 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCcccCCc-HHHHHHHHHHHHHcCCeEEEEcC
Confidence 7999999999999999999999862111 1111 233556888776555
No 315
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=36.31 E-value=1.4e+02 Score=26.58 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=27.3
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEE
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~ 62 (295)
+.|..|.+++..++.+|.+++++-+. + .+....+.+|++.+
T Consensus 159 G~G~iG~~~a~~L~~~Ga~V~v~~r~--~----~~~~~~~~~G~~~~ 199 (296)
T PRK08306 159 GFGRTGMTLARTLKALGANVTVGARK--S----AHLARITEMGLSPF 199 (296)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEECC--H----HHHHHHHHcCCeee
Confidence 46889999999998888765555332 2 12335667787654
No 316
>PRK07121 hypothetical protein; Validated
Probab=36.22 E-value=57 Score=31.19 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=26.2
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
..++.+|+ ++|..|.+.|+.|+..|.+++++-
T Consensus 19 ~~~DVvVV--GaG~AGl~AA~~aae~G~~VillE 50 (492)
T PRK07121 19 DEADVVVV--GFGAAGACAAIEAAAAGARVLVLE 50 (492)
T ss_pred CccCEEEE--CcCHHHHHHHHHHHHCCCeEEEEe
Confidence 45676665 479999999999999999888764
No 317
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=36.08 E-value=1.9e+02 Score=26.23 Aligned_cols=68 Identities=9% Similarity=0.039 Sum_probs=44.1
Q ss_pred CCCh-HHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcC-C-EEEEecCchhHHHHHHHHHHHhccCCceeeeCc
Q 022573 16 GAGQ-HGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLG-A-QVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGT 92 (295)
Q Consensus 16 ssGN-~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~G-A-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (295)
+-|+ ++..+.-.|+.-|++.++|+-.+... .-+.++ | +++.++..-+....+..+++.+. +..++|++
T Consensus 23 t~gSHSaL~Il~GAK~EGF~Ti~v~~~gr~~-------~Y~~f~~a~e~i~v~~f~dil~~~iqe~L~~~--n~I~IP~g 93 (361)
T COG1759 23 TIGSHSALQILDGAKEEGFRTIAVCQRGREK-------PYEKFPVADEVIIVDKFSDILNEEIQEELREL--NAIFIPHG 93 (361)
T ss_pred EeecchHHHHhhhHHhcCCcEEEEEecCccc-------hHHhhchhheEEEechhHHHhhHHHHHHHHHc--CeEEecCC
Confidence 4455 67888999999999999999764211 223333 4 88888883333333344556654 77888864
No 318
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=36.06 E-value=60 Score=31.28 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
..+.+|+ ++|..|.+.|+.|+..|.+++|+=
T Consensus 61 ~~DVvVV--G~G~AGl~AAi~Aa~~Ga~VivlE 91 (506)
T PRK06481 61 KYDIVIV--GAGGAGMSAAIEAKDAGMNPVILE 91 (506)
T ss_pred cCCEEEE--CcCHHHHHHHHHHHHCCCCEEEEE
Confidence 4565565 479999999999999999887753
No 319
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=36.00 E-value=1.5e+02 Score=30.27 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=34.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCc-eEEEeeCCCcc--cchhhHHHHHHcCCEEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALD-CTVFMGTADME--KQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~-~~vv~p~~~~~--~~~~~~~~l~~~GA~v~~ 63 (295)
.+|+. ++||.|.-+|..+.++|.+ ++++.+....+ .....+..++..|.+++.
T Consensus 572 ~VvVI-GgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 572 KVAVV-GGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred cEEEE-CCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 34443 5899999999999999998 88887653111 111122355667877653
No 320
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=35.91 E-value=2.8e+02 Score=23.82 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCceEEEee
Q 022573 20 HGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 20 ~g~a~A~~a~~~G~~~~vv~p 40 (295)
-+..+|..++..|-++.+|+=
T Consensus 127 vavGmAlg~kl~~~~~~Vyvi 147 (243)
T COG3959 127 VAVGMALGAKLKGSPYRVYVI 147 (243)
T ss_pred HHHHHHHHHhhcCCCceEEEE
Confidence 667788888888877776654
No 321
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=35.85 E-value=56 Score=29.99 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=26.8
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
+...+.+|+ ++|-.|.++|+.-++.|++++|+=.
T Consensus 4 ~~~~dV~Iv--GaG~aGl~~A~~La~~G~~v~liE~ 37 (392)
T PRK08773 4 RSRRDAVIV--GGGVVGAACALALADAGLSVALVEG 37 (392)
T ss_pred CCCCCEEEE--CcCHHHHHHHHHHhcCCCEEEEEeC
Confidence 344565555 5799999999999999999877754
No 322
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=35.68 E-value=58 Score=29.87 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=25.3
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
.+.+|+ ++|-.|.++|..-++.|++++||=.
T Consensus 4 ~dv~Iv--GgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 4 YDIAVV--GGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred ccEEEE--CcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 344444 5899999999999999999999863
No 323
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=35.58 E-value=1.2e+02 Score=30.38 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=36.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC---------c------ccchhhHHHHHHcCCEEEE
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTAD---------M------EKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~---------~------~~~~~~~~~l~~~GA~v~~ 63 (295)
+.+.+|+ ++|-.|.+.|...++.|++++||=.... + +.....++.++.+|.++..
T Consensus 327 ~~~VaII--GaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 327 DKRVAII--GAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CCEEEEE--CCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 4444444 5799999999999999999888843211 0 1111234567888988753
No 324
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=35.50 E-value=1.1e+02 Score=28.17 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=9.4
Q ss_pred CChHHHHHHHHHHHcCCc
Q 022573 17 AGQHGVATAAACAKLALD 34 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~ 34 (295)
+|..|..++..|+.+|.+
T Consensus 187 ~G~vG~~avq~Ak~~Ga~ 204 (375)
T PLN02178 187 LGGLGHIAVKIGKAFGLR 204 (375)
T ss_pred ccHHHHHHHHHHHHcCCe
Confidence 355555555555555554
No 325
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=35.47 E-value=1.2e+02 Score=28.21 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEE
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 61 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v 61 (295)
++|..|..+...|+.+|.+.+++. +.. +.++++.+.+|++.
T Consensus 193 G~G~iG~~aiqlAk~~Ga~~vi~~-d~~----~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 193 GAGPVGLAAAASAQLLGAAVVIVG-DLN----PARLAQARSFGCET 233 (393)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEe-CCC----HHHHHHHHHcCCeE
Confidence 456666666666666666654422 111 12444566666653
No 326
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=35.45 E-value=91 Score=26.30 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHcCCceEEEeeCC
Q 022573 18 GQHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 18 GN~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
|-+-..||.++++.|+++.+++...
T Consensus 53 GC~P~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 53 GCGPFGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred CcChHHHHHHHHHcCCceEEEECCC
Confidence 5577778888888999999999764
No 327
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=35.35 E-value=68 Score=25.93 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=17.1
Q ss_pred CCChHHHHHHHHHHHcCCceEEEe
Q 022573 16 GAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
+-|.-|+++|...+.+|.+++|+=
T Consensus 30 GYG~vG~g~A~~lr~~Ga~V~V~e 53 (162)
T PF00670_consen 30 GYGKVGKGIARALRGLGARVTVTE 53 (162)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEE-
T ss_pred CCCcccHHHHHHHhhCCCEEEEEE
Confidence 469999999999999997766543
No 328
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=35.33 E-value=56 Score=30.47 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCChHHHHHHHHHHHcCCceEEEee
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
++|-.|...|+++++.|.++.++..
T Consensus 6 GgG~AG~eAA~aaAr~G~~V~Lit~ 30 (392)
T PF01134_consen 6 GGGHAGCEAALAAARMGAKVLLITH 30 (392)
T ss_dssp SSSHHHHHHHHHHHHTT--EEEEES
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEee
Confidence 5799999999999999999999943
No 329
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.24 E-value=2.7e+02 Score=23.42 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=40.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+.+++.+++|--|.++|..-...|.+++++.... . .+.+.++..+...+.++-.-.+...+++++..++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~-~----~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA-E----NEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc-H----HHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 3445546678899999988888998876654332 1 1223444446666666654344444555544443
No 330
>PRK14694 putative mercuric reductase; Provisional
Probab=35.21 E-value=1.5e+02 Score=28.17 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=26.8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|.-+|...+.+|.+++++.+.
T Consensus 178 ~~~vvVi-G~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVI-GASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 3455554 57999999999999999999999764
No 331
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=35.20 E-value=27 Score=30.64 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=22.9
Q ss_pred CCEEEEecCCchhHHHhhhhhhcCCCceEEEeecCCC
Q 022573 126 PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGF 162 (295)
Q Consensus 126 ~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~~ 162 (295)
+|+|||..|.||...+-- |.+.+..+|..+|.-..
T Consensus 1 yD~iIVGsG~~G~v~A~r--Ls~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASR--LSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHH--HTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHH--HhhCCCCcEEEEEcccc
Confidence 489999998887654432 33456678999987665
No 332
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=35.02 E-value=1.5e+02 Score=27.88 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=26.9
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|.-+|..-+.+|.+++++.+.
T Consensus 175 ~~~v~Ii-GgG~~g~E~A~~l~~~g~~Vtli~~~ 207 (461)
T PRK05249 175 PRSLIIY-GAGVIGCEYASIFAALGVKVTLINTR 207 (461)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 3455554 57999999999999999999998765
No 333
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=34.97 E-value=1.2e+02 Score=26.92 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=12.2
Q ss_pred CChHHHHHHHHHHHcCCc
Q 022573 17 AGQHGVATAAACAKLALD 34 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~ 34 (295)
+|..|..++..++.+|.+
T Consensus 172 ~G~vG~~~~~~ak~~G~~ 189 (339)
T cd08239 172 AGPVGLGALMLARALGAE 189 (339)
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 466666666677777766
No 334
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=34.91 E-value=84 Score=25.63 Aligned_cols=41 Identities=29% Similarity=0.335 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc-CCCceEEEe
Q 022573 111 GKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGV 157 (295)
Q Consensus 111 ~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~-~~~~~vi~v 157 (295)
....+.++.++ |-.||.|+.=.|=|-++ .+|. .|++++++-
T Consensus 53 v~~a~~~L~~~-Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y 94 (171)
T PF12000_consen 53 VARAARQLRAQ-GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHHHHc-CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEE
Confidence 45566666554 77899998888877764 5665 899999885
No 335
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=34.82 E-value=2.6e+02 Score=23.03 Aligned_cols=54 Identities=19% Similarity=0.097 Sum_probs=34.3
Q ss_pred EeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 13 AATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 13 ~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
+.+++|-.|..+|..-...|.+++++..... .........++..|+++.....+
T Consensus 3 ItG~~g~iG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D 56 (239)
T TIGR01830 3 VTGASRGIGRAIALKLAKEGAKVIITYRSSE-EGAEEVVEELKAYGVKALGVVCD 56 (239)
T ss_pred EECCCcHHHHHHHHHHHHCCCEEEEEeCCch-hHHHHHHHHHHhcCCceEEEEec
Confidence 3466788999999888888998766654321 11122334566778777655543
No 336
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=34.68 E-value=66 Score=31.04 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=25.7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
.+.+|+ ++|-.|.+.|..++++|++++++-.
T Consensus 213 ~dVvII--GgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 213 YDVLVV--GGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred CCEEEE--CCCHHHHHHHHHHHHCCCcEEEEec
Confidence 455554 5799999999999999999999853
No 337
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=34.66 E-value=1.3e+02 Score=28.13 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=26.6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|..+|...+++|.+++++-+.
T Consensus 157 ~~~vvII-GgG~~g~e~A~~l~~~g~~Vtli~~~ 189 (438)
T PRK07251 157 PERLGII-GGGNIGLEFAGLYNKLGSKVTVLDAA 189 (438)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 3455554 57999999999999999999998765
No 338
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=34.63 E-value=64 Score=30.30 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=25.7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
.+.+|+ ++|..|.+.|..+++.|+++.++=.
T Consensus 4 yDvvVI--GgGpaGl~aA~~la~~g~~V~lie~ 34 (441)
T PRK08010 4 YQAVII--GFGKAGKTLAVTLAKAGWRVALIEQ 34 (441)
T ss_pred CCEEEE--CCCHhHHHHHHHHHHCCCeEEEEcC
Confidence 566666 4799999999999999999877753
No 339
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=34.61 E-value=1.4e+02 Score=27.02 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=10.0
Q ss_pred CChHHHHHHHHHHHcCCc
Q 022573 17 AGQHGVATAAACAKLALD 34 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~ 34 (295)
+|-.|.++...|+.+|.+
T Consensus 185 ~g~vG~~a~~~ak~~G~~ 202 (358)
T TIGR03451 185 CGGVGDAAIAGAALAGAS 202 (358)
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 355555555555555554
No 340
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=34.48 E-value=3.5e+02 Score=24.47 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=71.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHH-HHH-HcCCEEEEecCchhHHHHHHHHHHHhccC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVL-LMK-LLGAQVKAVDGCFKEASSEAIRNWVGNLE 84 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~-~l~-~~GA~v~~~~~~~~~~~~~~~~~~~~~~~ 84 (295)
+++..|+. -...+......-|...|++..|++.++-++.-..+++ .++ ..| +.+++++......-- + ..
T Consensus 88 ~~D~avI~-VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g--~rliGPNc~Gii~p~-~--~~--- 158 (317)
T PTZ00187 88 GADASVIY-VPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNK--TRLIGPNCPGIIKPG-E--CK--- 158 (317)
T ss_pred CCCEEEEe-cCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCC--CEEECCCCceEEcch-h--hc---
Confidence 46777764 4567777888888889999998887763332111111 222 234 445555322211100 0 00
Q ss_pred CceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCC----chhHHHhhhhhhcCCCceEEEeecC
Q 022573 85 KSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGS----GSNALGLFHEFINDEDVRLIGVEAA 160 (295)
Q Consensus 85 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~----Gg~~~G~~~~~~~~~~~~vi~ve~~ 160 (295)
-+. ++.... .|-..-++.--+++.+|+..++.+ .+..+. .++++|+ |.++.=+..+|.+.|.+++|.+--+
T Consensus 159 ~gi-~p~~~~--~~G~VgiVSqSGtl~~ei~~~~~~-~GlG~S-~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E 233 (317)
T PTZ00187 159 IGI-MPGHIH--KKGKIGIVSRSGTLTYEAVAQTTA-VGLGQS-TCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGE 233 (317)
T ss_pred ccc-CCcCCC--CCCCEEEEeCCHHHHHHHHHHHHH-cCCCEE-EEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEe
Confidence 001 111000 111111223344667888877643 343344 4455553 4555555666667899999886444
No 341
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=34.47 E-value=71 Score=27.74 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=25.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
..+.+|+ ++|-.|.+.|+.+++.|+++.++=
T Consensus 21 ~~DVvIV--GgGpAGL~aA~~la~~G~~V~vlE 51 (254)
T TIGR00292 21 ESDVIIV--GAGPSGLTAAYYLAKNGLKVCVLE 51 (254)
T ss_pred CCCEEEE--CCCHHHHHHHHHHHHCCCcEEEEe
Confidence 4565665 479999999999999999988873
No 342
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.31 E-value=1.5e+02 Score=28.12 Aligned_cols=51 Identities=31% Similarity=0.416 Sum_probs=32.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~ 62 (295)
.+++. +.|..|.++|.+.+..|.+++++=... .+......+.++..|.+++
T Consensus 18 ~v~vi-G~G~~G~~~A~~L~~~G~~V~~~d~~~-~~~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 18 RVVVA-GLGVSGFAAADALLELGARVTVVDDGD-DERHRALAAILEALGATVR 68 (480)
T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCCc-hhhhHHHHHHHHHcCCEEE
Confidence 34443 579999999999999999877764332 1111122345777787664
No 343
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=34.21 E-value=1.7e+02 Score=24.61 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=20.3
Q ss_pred cEEEEeCCCChH--HHHHHHHHHHcCCceEEEeeCC
Q 022573 9 KSIVAATGAGQH--GVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 9 ~~~V~~~ssGN~--g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
..+|+++++.|- |..+|...+..|.++.++...+
T Consensus 51 ~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~ 86 (203)
T COG0062 51 RVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGD 86 (203)
T ss_pred EEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCC
Confidence 355665544443 4444445555688888888764
No 344
>PRK06924 short chain dehydrogenase; Provisional
Probab=34.01 E-value=2.3e+02 Score=23.71 Aligned_cols=31 Identities=10% Similarity=0.008 Sum_probs=24.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
.+++.+++|.-|.++|......|.+++++..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeC
Confidence 4555567788999999999889998776654
No 345
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=33.98 E-value=2.6e+02 Score=24.23 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=18.2
Q ss_pred HHHHHHcCCEEEEecCchhHHHHHHHHHHHhccC
Q 022573 51 VLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLE 84 (295)
Q Consensus 51 ~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~ 84 (295)
.+.+...||++..+-.+ +...+.+++++++..
T Consensus 25 Ak~l~~~GAeL~fTy~~--e~l~krv~~la~~~~ 56 (259)
T COG0623 25 AKALAEQGAELAFTYQG--ERLEKRVEELAEELG 56 (259)
T ss_pred HHHHHHcCCEEEEEecc--HHHHHHHHHHHhhcc
Confidence 34667777777665542 344444556666543
No 346
>PRK05872 short chain dehydrogenase; Provisional
Probab=33.89 E-value=3.2e+02 Score=23.88 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=23.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
+.+++.+++|.-|.++|......|.+++++-
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 40 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVD 40 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3455556678899999999999998765554
No 347
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=33.81 E-value=1.3e+02 Score=26.53 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=12.0
Q ss_pred CChHHHHHHHHHHHc-CCceEEE
Q 022573 17 AGQHGVATAAACAKL-ALDCTVF 38 (295)
Q Consensus 17 sGN~g~a~A~~a~~~-G~~~~vv 38 (295)
+|..|.++...|+.+ |++++.+
T Consensus 158 ~g~vg~~~~~~ak~~~G~~vi~~ 180 (336)
T TIGR02817 158 AGGVGSILIQLARQLTGLTVIAT 180 (336)
T ss_pred CcHHHHHHHHHHHHhCCCEEEEE
Confidence 455666666666655 5554433
No 348
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=33.79 E-value=2.3e+02 Score=25.88 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=25.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~ 60 (295)
.+++. ++|..|.+++..++.+|.+-++++.. ++ .+++.++.+|++
T Consensus 193 ~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~-~~----~~~~~a~~lGa~ 237 (373)
T cd08299 193 TCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI-NK----DKFAKAKELGAT 237 (373)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC-CH----HHHHHHHHcCCc
Confidence 34443 35777777777778887743333322 11 234466667774
No 349
>PRK14727 putative mercuric reductase; Provisional
Probab=33.78 E-value=1.6e+02 Score=28.15 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.0
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|+.|.-+|...+.+|.+++++.+.
T Consensus 188 ~k~vvVI-GgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVI-GSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 4556664 57999999999999999999999754
No 350
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=33.73 E-value=1.4e+02 Score=24.85 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeec
Q 022573 111 GKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEA 159 (295)
Q Consensus 111 ~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~ 159 (295)
...++++|. +.+-.||.||+..++|=..+-+..-+..-.+...+.++-
T Consensus 16 ~~~lA~kI~-~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~ 63 (192)
T COG2236 16 CRALAEKIR-ASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEH 63 (192)
T ss_pred HHHHHHHHH-HcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEE
Confidence 566667764 345689988776666666655554443333444444443
No 351
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=33.72 E-value=1.5e+02 Score=26.61 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=49.7
Q ss_pred ccCCcEEEEeCCCCh-----HHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch-hHHHHHHHHH
Q 022573 5 RMGRKSIVAATGAGQ-----HGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF-KEASSEAIRN 78 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN-----~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~-~~~~~~~~~~ 78 (295)
+..+..+.+.+|.-+ ++..+.-.+++.|+++..+-...+ -+ ++-.+|.-+-.+..+| ..+.+.++-+
T Consensus 109 ~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQT------Gi-mia~~Gv~iDav~~DFvaGavE~~v~~ 181 (301)
T PF07755_consen 109 EVKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQT------GI-MIAGYGVPIDAVPSDFVAGAVEALVPE 181 (301)
T ss_dssp G-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHH------HH-HCHSEC--GGGSBGGGHHHHHHHHHHH
T ss_pred cCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCc------eE-EEecCCeeccchhhhhHHHHHHHHHHh
Confidence 345566666666532 888888999999999887764421 11 2244444443344444 2344444333
Q ss_pred HHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCC
Q 022573 79 WVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGS 135 (295)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~ 135 (295)
..+ .....++..|-.-.||-. +.+..++ .. +.+||++|++.--
T Consensus 182 ~~~-~~d~ivVEGQgsL~hPay-------~gvsl~l----L~--Gs~Pd~lVL~H~p 224 (301)
T PF07755_consen 182 AAE-EHDWIVVEGQGSLSHPAY-------SGVSLGL----LH--GSQPDALVLCHAP 224 (301)
T ss_dssp HCC-C-SEEEEE--S-TTSTTT-------HHCHHHH----HH--HH--SEEEEEEET
T ss_pred hCc-CCCEEEEeccccccCccc-------cccchhh----hc--cCCCCeEEEEecC
Confidence 332 223444445543335532 1112222 22 3468888887643
No 352
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=33.65 E-value=2e+02 Score=28.54 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=40.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhH
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKE 70 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~ 70 (295)
+.+|++ +.|..|+.+|..-...|++++++=.+ + .+++.++.+|.+++.-+....+
T Consensus 401 ~~vII~-G~Gr~G~~va~~L~~~g~~vvvID~d--~----~~v~~~~~~g~~v~~GDat~~~ 455 (601)
T PRK03659 401 PQVIIV-GFGRFGQVIGRLLMANKMRITVLERD--I----SAVNLMRKYGYKVYYGDATQLE 455 (601)
T ss_pred CCEEEe-cCchHHHHHHHHHHhCCCCEEEEECC--H----HHHHHHHhCCCeEEEeeCCCHH
Confidence 456664 68999999999999999998765432 2 2455778899888877765443
No 353
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=33.62 E-value=68 Score=31.48 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=26.7
Q ss_pred cccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEE
Q 022573 4 KRMGRKSIVAATGAGQHGVATAAACAKLALDCTVF 38 (295)
Q Consensus 4 ~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv 38 (295)
+...++.+|+ ++|..|.+.|+.++..|.+++++
T Consensus 6 ~~~~~DVvVV--G~G~aGl~AA~~aa~~G~~v~ll 38 (574)
T PRK12842 6 NELTCDVLVI--GSGAGGLSAAITARKLGLDVVVL 38 (574)
T ss_pred cCCCCCEEEE--CcCHHHHHHHHHHHHcCCeEEEE
Confidence 4556776666 47999999999999999987775
No 354
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=33.56 E-value=1.5e+02 Score=25.98 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=6.7
Q ss_pred CCCEEEEecCC
Q 022573 125 KPDVLLACVGS 135 (295)
Q Consensus 125 ~~d~vvv~vG~ 135 (295)
.+|.|+-++|+
T Consensus 208 ~~d~v~d~~g~ 218 (324)
T cd08292 208 PISVALDSVGG 218 (324)
T ss_pred CCcEEEECCCC
Confidence 46777666654
No 355
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=33.48 E-value=2.5e+02 Score=22.37 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHcCCceEEEe
Q 022573 18 GQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 18 GN~g~a~A~~a~~~G~~~~vv~ 39 (295)
||...+++-+-...++|+.+++
T Consensus 70 gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 70 GNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred HHHHHHHHHHHHcCCCCEEEEE
Confidence 6766666665568899999999
No 356
>PTZ00323 NAD+ synthase; Provisional
Probab=33.48 E-value=1.5e+02 Score=26.49 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=38.4
Q ss_pred ccCCcEEEEeCCCCh-HHHHHHHHHHHcCC-------ceEEEeeCC-CcccchhhHHHHHHcCCEEEEecCc
Q 022573 5 RMGRKSIVAATGAGQ-HGVATAAACAKLAL-------DCTVFMGTA-DMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN-~g~a~A~~a~~~G~-------~~~vv~p~~-~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
+.|.+.+|+.-|+|= .+..++.+.+.+|. -+.+.+|.. ++...+.-...++.+|.+.+.++-+
T Consensus 43 ~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi~ 114 (294)
T PTZ00323 43 RCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQT 114 (294)
T ss_pred HcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEECc
Confidence 346677888888885 44444444445654 234556743 2222233345789999999888873
No 357
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=33.41 E-value=1.7e+02 Score=26.77 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHcCCceEEEeeCCC-ccc--chhhHHHHHHcCCEEEEecC
Q 022573 19 QHGVATAAACAKLALDCTVFMGTAD-MEK--QSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 19 N~g~a~A~~a~~~G~~~~vv~p~~~-~~~--~~~~~~~l~~~GA~v~~~~~ 66 (295)
|.+.|+..+++++|+.++++.|+.- +.. ...-....+..|+++..++.
T Consensus 168 ~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d 218 (336)
T PRK03515 168 NMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTED 218 (336)
T ss_pred cHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcC
Confidence 6899999999999999999999852 211 00001234557888876655
No 358
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=33.39 E-value=70 Score=27.55 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=24.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+.+|+ ++|=.|.++|+..++.|++++|+=..
T Consensus 2 dv~Ii--GaG~aGl~~A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 2 DVVVV--GAGPAGASAAYRLADKGLRVLLLEKK 32 (295)
T ss_pred CEEEE--CCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 34444 57999999999999999998887543
No 359
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=33.33 E-value=69 Score=30.91 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=25.6
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
+..++.+|+ ++| .|.+.|+.++..|.+++|+=
T Consensus 5 d~~~DVvVV--G~G-aGl~aA~~aa~~G~~V~vlE 36 (513)
T PRK12837 5 DEEVDVLVA--GSG-GGVAGAYTAAREGLSVALVE 36 (513)
T ss_pred CCccCEEEE--Cch-HHHHHHHHHHHCCCcEEEEe
Confidence 346676666 468 99999999999999987764
No 360
>PRK07074 short chain dehydrogenase; Provisional
Probab=33.21 E-value=2.9e+02 Score=23.18 Aligned_cols=30 Identities=17% Similarity=0.005 Sum_probs=22.7
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
+++.+.+|.-|.++|......|.+++++..
T Consensus 5 ilItGat~~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 5 ALVTGAAGGIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred EEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 444456688999999988889988776653
No 361
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=33.11 E-value=71 Score=30.22 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
.+.+|+ ++|-.|.+.|..++++|.++.++=
T Consensus 3 yDvvVI--G~GpaG~~aA~~aa~~G~~V~liE 32 (450)
T TIGR01421 3 YDYLVI--GGGSGGIASARRAAEHGAKALLVE 32 (450)
T ss_pred CCEEEE--CcCHHHHHHHHHHHHCCCcEEEec
Confidence 566666 479999999999999999998874
No 362
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=33.04 E-value=1.9e+02 Score=27.38 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=34.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCC-ceEEEeeCCC--cccchhhHHHHHHcCCEEEE
Q 022573 9 KSIVAATGAGQHGVATAAACAKLAL-DCTVFMGTAD--MEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~-~~~vv~p~~~--~~~~~~~~~~l~~~GA~v~~ 63 (295)
+.+++. ++||.|.-+|....++|. +++++.+... ..........++..|.+++.
T Consensus 274 ~~VvVi-GgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 274 KRVVVI-GGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CeEEEE-CCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 344443 579999999999999998 7888876421 10011123456677877663
No 363
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=33.02 E-value=1.7e+02 Score=27.44 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=27.2
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|.-+|...+++|.+++++.+.
T Consensus 148 ~~~vvVi-GgG~ig~E~A~~l~~~g~~Vtli~~~ 180 (438)
T PRK13512 148 VDKALVV-GAGYISLEVLENLYERGLHPTLIHRS 180 (438)
T ss_pred CCEEEEE-CCCHHHHHHHHHHHhCCCcEEEEecc
Confidence 4556554 47999999999999999999999865
No 364
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=32.94 E-value=1.7e+02 Score=27.60 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=26.7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|+.|.-+|...+.+|.+++++...
T Consensus 166 ~~~vvII-GgG~iG~E~A~~l~~~g~~Vtli~~~ 198 (450)
T TIGR01421 166 PKRVVIV-GAGYIAVELAGVLHGLGSETHLVIRH 198 (450)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 4555654 57999999999999999999998754
No 365
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=32.90 E-value=1.5e+02 Score=26.61 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=10.4
Q ss_pred CCEEEEecCCchhHHHhhh
Q 022573 126 PDVLLACVGSGSNALGLFH 144 (295)
Q Consensus 126 ~d~vvv~vG~Gg~~~G~~~ 144 (295)
+|.|+-++|++.++.-...
T Consensus 242 ~d~vid~~g~~~~~~~~~~ 260 (351)
T cd08233 242 VDVSFDCAGVQATLDTAID 260 (351)
T ss_pred CCEEEECCCCHHHHHHHHH
Confidence 6767666665544433333
No 366
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.75 E-value=2.9e+02 Score=22.89 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=39.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
.+++.+++|..|..++......|.++++++..+ ++......+.++..+.++.....+. .+...+++++..+
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDIN-EEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 455556678899999988888898877663322 1111112233444566665555433 2333344443333
No 367
>PLN02565 cysteine synthase
Probab=32.72 E-value=3.7e+02 Score=24.19 Aligned_cols=32 Identities=6% Similarity=-0.114 Sum_probs=22.5
Q ss_pred CCCcchhhHHHHHHHhcCCCCCCCeEEEEecC
Q 022573 248 FPALEASHALAFLEKLCPTLPNGAKVVVNCSG 279 (295)
Q Consensus 248 ~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg 279 (295)
+++.-+|..++++.+..++..++-+|+.+-+-
T Consensus 177 v~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~ 208 (322)
T PLN02565 177 VSGIGTGGTITGAGKYLKEQNPDIKLYGVEPV 208 (322)
T ss_pred EEcCCchHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 35666777778877777766666777777664
No 368
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=32.68 E-value=3.4e+02 Score=23.76 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=27.5
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHc--CCceEEEeeCCC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKL--ALDCTVFMGTAD 43 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~--G~~~~vv~p~~~ 43 (295)
.++.+|+..++|.+..+++.+.+.+ ..+++.|-|..+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~ 198 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGS 198 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 4788888777788778888888776 567777777654
No 369
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=32.67 E-value=92 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCC
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
+.|+-|+++|..++.+|++++.+-|..
T Consensus 43 G~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 43 GYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp STSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred EEcCCcCeEeeeeecCCceeEEecccC
Confidence 579999999999999999999988764
No 370
>PRK09134 short chain dehydrogenase; Provisional
Probab=32.49 E-value=3.1e+02 Score=23.16 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=34.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
.+++.+.+|.-|..++....+.|..++++...+. +....-...++..|.++..+..
T Consensus 11 ~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 66 (258)
T PRK09134 11 AALVTGAARRIGRAIALDLAAHGFDVAVHYNRSR-DEAEALAAEIRALGRRAVALQA 66 (258)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCeEEEEEc
Confidence 4455566788999999999999988776654321 1111112234445777765544
No 371
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=32.45 E-value=2.6e+02 Score=26.21 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHcCCceEEEeeCCC-cccchhhHH----HHHHcCCEEEEecC
Q 022573 19 QHGVATAAACAKLALDCTVFMGTAD-MEKQSSKVL----LMKLLGAQVKAVDG 66 (295)
Q Consensus 19 N~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~----~l~~~GA~v~~~~~ 66 (295)
|.+.|++.++.++|+.++++.|++- +.. . .+. ..+..|+++..++.
T Consensus 205 ~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~-~-i~~~a~~~~~~~G~~i~~~~d 255 (395)
T PRK07200 205 SVPQGIIGLMTRFGMDVTLAHPEGYDLMP-E-VVEVAKKNAKASGGSFRQVNS 255 (395)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCccCCCH-H-HHHHHHHHHHHcCCeEEEEcC
Confidence 6889999999999999999999852 211 1 111 24667988876654
No 372
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=32.25 E-value=4.7e+02 Score=25.28 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=21.6
Q ss_pred CEEEEecCCchhHHHhhhhhhcCCCceEEEeecCCCC
Q 022573 127 DVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFG 163 (295)
Q Consensus 127 d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~~~ 163 (295)
..| +.+++|-+..|++.+.+. ...+.+.|-|...+
T Consensus 66 ~gV-V~aSaGNha~~vA~aa~~-~Gi~~~IvmP~~tp 100 (499)
T TIGR01124 66 RGV-IAASAGNHAQGVAFSAAR-LGLKALIVMPETTP 100 (499)
T ss_pred CEE-EEECCCHHHHHHHHHHHH-cCCCEEEEECCCCC
Confidence 344 445788888788766543 44556666677653
No 373
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=32.23 E-value=1.6e+02 Score=27.96 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=26.8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|..+|...+++|.+++++-+.
T Consensus 180 ~~~vvII-GgG~~G~E~A~~l~~~g~~Vtli~~~ 212 (472)
T PRK05976 180 PKSLVIV-GGGVIGLEWASMLADFGVEVTVVEAA 212 (472)
T ss_pred CCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 3556664 57999999999999999999998654
No 374
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=32.05 E-value=2.1e+02 Score=25.94 Aligned_cols=39 Identities=8% Similarity=0.164 Sum_probs=27.9
Q ss_pred cccCCcEEEEeCCC---C--hHHHHHHHHHHHcCCceEEEeeCC
Q 022573 4 KRMGRKSIVAATGA---G--QHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 4 ~~~~~~~~V~~~ss---G--N~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
.+..++.+.+.+|+ | .+.+.+..+++..|+++-.+-...
T Consensus 144 ~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgq 187 (339)
T COG3367 144 RKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQ 187 (339)
T ss_pred cccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCc
Confidence 34446666665544 4 388899999999999988877653
No 375
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=31.94 E-value=2.2e+02 Score=23.88 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEE
Q 022573 52 LLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLA 131 (295)
Q Consensus 52 ~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv 131 (295)
+.+...|++|+.++.+.+... ..++++.++.+...+..+- .+ ..-...+..++.++.++++|.+|.
T Consensus 14 ~~l~~~Ga~V~~~~~~~~~~~-~~~~~l~~~~~~~~~~~D~------~~-------~~~v~~~~~~~~~~~~g~iD~lV~ 79 (241)
T PF13561_consen 14 RALAEEGANVILTDRNEEKLA-DALEELAKEYGAEVIQCDL------SD-------EESVEALFDEAVERFGGRIDILVN 79 (241)
T ss_dssp HHHHHTTEEEEEEESSHHHHH-HHHHHHHHHTTSEEEESCT------TS-------HHHHHHHHHHHHHHHCSSESEEEE
T ss_pred HHHHHCCCEEEEEeCChHHHH-HHHHHHHHHcCCceEeecC------cc-------hHHHHHHHHHHHhhcCCCeEEEEe
Confidence 466778999999988765432 3345566654444322111 11 011344556676777457999888
Q ss_pred ecCCch
Q 022573 132 CVGSGS 137 (295)
Q Consensus 132 ~vG~Gg 137 (295)
.+|...
T Consensus 80 ~a~~~~ 85 (241)
T PF13561_consen 80 NAGISP 85 (241)
T ss_dssp EEESCT
T ss_pred cccccc
Confidence 877554
No 376
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.91 E-value=3e+02 Score=22.87 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=24.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
.+++.+++|..|.+++......|.+++++...
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 45555677999999999999999997666543
No 377
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=31.89 E-value=3e+02 Score=22.94 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=40.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHH
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWV 80 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~ 80 (295)
.+++.+.+|..|.+++..-...|.+++++..... ..+.....++..+.++..+..+. .+...+++++..
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDE--AAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4555566788999999988888998877655421 11222334555677765554432 233344444333
No 378
>PRK08227 autoinducer 2 aldolase; Validated
Probab=31.82 E-value=3.1e+02 Score=24.09 Aligned_cols=72 Identities=14% Similarity=0.039 Sum_probs=42.6
Q ss_pred ccccCCcEEEEeCCCCh--------HHHHHHHHHHHcCCceEEEeeCCCc-c----cchhhHHHHHHcCCEEEEecCchh
Q 022573 3 AKRMGRKSIVAATGAGQ--------HGVATAAACAKLALDCTVFMGTADM-E----KQSSKVLLMKLLGAQVKAVDGCFK 69 (295)
Q Consensus 3 a~~~~~~~~V~~~ssGN--------~g~a~A~~a~~~G~~~~vv~p~~~~-~----~~~~~~~~l~~~GA~v~~~~~~~~ 69 (295)
|.+.|++.+.+.--=|+ .-..++..|.++|+|+++++|.+.. . ....-.+.--.+||+++.++..-
T Consensus 103 AvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~- 181 (264)
T PRK08227 103 AVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVE- 181 (264)
T ss_pred HHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCH-
Confidence 55677765544221232 3345667889999999998887521 1 11112344567899999888742
Q ss_pred HHHHHH
Q 022573 70 EASSEA 75 (295)
Q Consensus 70 ~~~~~~ 75 (295)
+.+.+.
T Consensus 182 ~~f~~v 187 (264)
T PRK08227 182 EGFERI 187 (264)
T ss_pred HHHHHH
Confidence 344443
No 379
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=31.78 E-value=65 Score=28.48 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=23.6
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+++. ++|=.|.++|.+.++.|++++||=..
T Consensus 4 V~Iv-GaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 4 VAIV-GAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEE---SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEE-CCCHHHHHHHHHHHhcccccccchhc
Confidence 3443 57999999999999999999888654
No 380
>PRK06370 mercuric reductase; Validated
Probab=31.78 E-value=1.9e+02 Score=27.30 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.0
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|.-+|...+++|.+++++.+.
T Consensus 171 ~~~vvVI-GgG~~g~E~A~~l~~~G~~Vtli~~~ 203 (463)
T PRK06370 171 PEHLVII-GGGYIGLEFAQMFRRFGSEVTVIERG 203 (463)
T ss_pred CCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 3455554 57999999999999999999998765
No 381
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=31.63 E-value=86 Score=27.75 Aligned_cols=42 Identities=10% Similarity=-0.022 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch
Q 022573 20 HGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 68 (295)
Q Consensus 20 ~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~ 68 (295)
--..+|..|+++|+++.++.|-++.+ .--.-|-+++.-+...
T Consensus 255 GTy~LAv~aKhhgipFyvaaP~tsid-------~~l~tG~eIiIEERp~ 296 (354)
T KOG1468|consen 255 GTYQLAVLAKHHGIPFYVAAPFTSID-------LSLATGDEIIIEERPP 296 (354)
T ss_pred hhhHHHHHHHhcCCceEEeccccccc-------cccCCCCeeEEeecCc
Confidence 44689999999999999999986432 2234577777666543
No 382
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=31.59 E-value=1.7e+02 Score=28.24 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=25.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
.+++. ++||.|.-+|...+.++.+++++.+..
T Consensus 353 ~VvVV-GgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 353 RVAVI-GGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred EEEEE-CCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 34443 579999999999999999999987663
No 383
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=31.49 E-value=1.5e+02 Score=24.67 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=18.9
Q ss_pred ccCCcEEEEeCCCChHHH-HHHHHHHHcCCceEEEee
Q 022573 5 RMGRKSIVAATGAGQHGV-ATAAACAKLALDCTVFMG 40 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~-a~A~~a~~~G~~~~vv~p 40 (295)
+.|.+++|+++-..|.|+ +.|.-|..+|++++++-.
T Consensus 139 ~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~D 175 (203)
T cd01013 139 ESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVAD 175 (203)
T ss_pred HcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEecc
Confidence 445566666554455443 344444456666555443
No 384
>PRK07023 short chain dehydrogenase; Provisional
Probab=31.46 E-value=1.4e+02 Score=25.05 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=32.4
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+++.+++|.-|.++|......|.+++++......+ ..+..|.++..+..
T Consensus 4 vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~-------~~~~~~~~~~~~~~ 52 (243)
T PRK07023 4 AIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS-------LAAAAGERLAEVEL 52 (243)
T ss_pred EEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh-------hhhccCCeEEEEEe
Confidence 44556778999999999888999877765432211 23445767655544
No 385
>PRK06123 short chain dehydrogenase; Provisional
Probab=31.46 E-value=3.1e+02 Score=22.84 Aligned_cols=71 Identities=13% Similarity=0.065 Sum_probs=37.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
.+++.+++|.-|.++|..-.+.|..+++.... .++........++..|.+++.+..+. .+...+++++..+
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLR-NRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDR 76 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCC-CHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHH
Confidence 34555667888888888877888765443322 22222222334566677765544432 3334444444333
No 386
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.46 E-value=3.1e+02 Score=22.87 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=23.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
.+++.+++|.-|.++|..-...|.++++...
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 4555567789999999988889988776553
No 387
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=31.42 E-value=3.8e+02 Score=23.89 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=26.8
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHc--------CCceEEEeeCCC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKL--------ALDCTVFMGTAD 43 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~--------G~~~~vv~p~~~ 43 (295)
.++.+|+..++|-+..+++.+.+.+ ..+++.+.|..+
T Consensus 171 ~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~ 215 (324)
T cd01563 171 VPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGA 215 (324)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCC
Confidence 3688888777777777777777664 467888888754
No 388
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=31.39 E-value=73 Score=29.70 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
|||-.|.++|..+...|.+++++.-.
T Consensus 209 SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 209 SSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 56889999999999999999887743
No 389
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.20 E-value=3.1e+02 Score=22.83 Aligned_cols=57 Identities=21% Similarity=0.102 Sum_probs=35.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
..+++.+++|--|.+++......|.++++...... .........++..|.++..+..
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRA-EEMNETLKMVKENGGEGIGVLA 63 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHHcCCeeEEEEe
Confidence 34555566788999999888889998766543221 2122334456677777665544
No 390
>PRK07985 oxidoreductase; Provisional
Probab=31.19 E-value=3.6e+02 Score=23.55 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=40.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--chhHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~~~~~~~~~~~~~~~ 81 (295)
+.+++.+++|.-|.++|......|.+++++......+..+.....++..|.++..+.. .-.+...+++++..+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 3455556678899999999999999877654322111111122234556777654443 223444455544444
No 391
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=31.13 E-value=73 Score=31.02 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=26.1
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
..++.+|+ ++|..|.+.|..++..|.+++|+-
T Consensus 3 ~~~DVvVV--G~G~AGl~AAl~Aa~~G~~VivlE 34 (549)
T PRK12834 3 MDADVIVV--GAGLAGLVAAAELADAGKRVLLLD 34 (549)
T ss_pred ccCCEEEE--CcCHHHHHHHHHHHHCCCeEEEEe
Confidence 35676666 479999999999999999988763
No 392
>PRK07102 short chain dehydrogenase; Provisional
Probab=31.12 E-value=3.1e+02 Score=22.82 Aligned_cols=32 Identities=13% Similarity=-0.011 Sum_probs=24.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++++.+++|.-|.+++......|.+++++...
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARD 34 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34555667889999999999999987776544
No 393
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=31.11 E-value=2.1e+02 Score=25.00 Aligned_cols=11 Identities=36% Similarity=0.438 Sum_probs=6.3
Q ss_pred CCCEEEEecCC
Q 022573 125 KPDVLLACVGS 135 (295)
Q Consensus 125 ~~d~vvv~vG~ 135 (295)
.+|.|+-++|+
T Consensus 211 ~~d~vl~~~g~ 221 (324)
T cd08244 211 GVTVVLDGVGG 221 (324)
T ss_pred CceEEEECCCh
Confidence 36666665553
No 394
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=31.01 E-value=3.4e+02 Score=23.18 Aligned_cols=95 Identities=8% Similarity=0.093 Sum_probs=49.1
Q ss_pred HHHHHHcCCceEEEeeCCC-cccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeeeCcccCCCCCchhh
Q 022573 25 AAACAKLALDCTVFMGTAD-MEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMV 103 (295)
Q Consensus 25 A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 103 (295)
-..|..+|+|.+.+-.... ......-.+.++..|++.+..+.-+.+.....+++.+++. +.-.. .|. |
T Consensus 51 ~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~l--gl~~~------~PL--W- 119 (223)
T TIGR00290 51 DLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCREL--GLKSF------APL--W- 119 (223)
T ss_pred HHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhc--CCEEe------ccc--c-
Confidence 3667778999754322211 1111223345667798888888843333333345555543 22111 221 2
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCch
Q 022573 104 REFQSIIGKETRKQAMEKWGGKPDVLLACVGSGS 137 (295)
Q Consensus 104 ~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg 137 (295)
+ .. -.++.+|+.+ ..+++++++|-.-|
T Consensus 120 -~-~~--~~~ll~e~i~---~G~~aiIv~v~a~g 146 (223)
T TIGR00290 120 -H-RD--PEKLMEEFVE---EKFEARIIAVAAEG 146 (223)
T ss_pred -C-CC--HHHHHHHHHH---cCCeEEEEEEecCC
Confidence 1 11 2455566543 34899999987654
No 395
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=31.01 E-value=2.3e+02 Score=28.27 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=41.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHH
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEA 71 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~ 71 (295)
.+.+|++ +.|..|+.+|-.-+..|++++++= . ++ .+++.++.+|.+++.-+.+..+.
T Consensus 400 ~~~vII~-G~Gr~G~~va~~L~~~g~~vvvID-~-d~----~~v~~~~~~g~~v~~GDat~~~~ 456 (621)
T PRK03562 400 QPRVIIA-GFGRFGQIVGRLLLSSGVKMTVLD-H-DP----DHIETLRKFGMKVFYGDATRMDL 456 (621)
T ss_pred cCcEEEE-ecChHHHHHHHHHHhCCCCEEEEE-C-CH----HHHHHHHhcCCeEEEEeCCCHHH
Confidence 3556664 589999999999999999987763 2 22 24567788999988777754433
No 396
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.00 E-value=3.3e+02 Score=23.04 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=41.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHcCCceEEEeeC----C-----CcccchhhHHHHHHcCCEEEEecCch--hHHHH
Q 022573 7 GRKSIVAATGA--GQHGVATAAACAKLALDCTVFMGT----A-----DMEKQSSKVLLMKLLGAQVKAVDGCF--KEASS 73 (295)
Q Consensus 7 ~~~~~V~~~ss--GN~g~a~A~~a~~~G~~~~vv~p~----~-----~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~ 73 (295)
++..+|+ +++ +.-|.++|......|.++++.... . ..+........++..|.++..+.-+. .+...
T Consensus 6 ~k~vlVt-Gas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 6 NKVAVVT-GVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPK 84 (256)
T ss_pred CcEEEEE-CCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 3444444 444 479999999999999987775311 0 01111112234566788886655432 34444
Q ss_pred HHHHHHHhc
Q 022573 74 EAIRNWVGN 82 (295)
Q Consensus 74 ~~~~~~~~~ 82 (295)
.++.+..++
T Consensus 85 ~~~~~~~~~ 93 (256)
T PRK12859 85 ELLNKVTEQ 93 (256)
T ss_pred HHHHHHHHH
Confidence 555444443
No 397
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.83 E-value=78 Score=31.25 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=25.6
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
..++.+|+ ++|..|.+.|..|+..|.+++|+-
T Consensus 11 ~~~DVlVI--G~G~AGl~AAi~Aa~~G~~V~vle 42 (591)
T PRK07057 11 RKFDVVIV--GAGGSGMRASLQLARAGLSVAVLS 42 (591)
T ss_pred ccCCEEEE--CccHHHHHHHHHHHHCCCcEEEEe
Confidence 44566666 479999999999999999987764
No 398
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.79 E-value=81 Score=30.86 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=26.9
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
...+.+|+ ++|..|.+.|..++..|.+++|+-.
T Consensus 5 ~~~DvvIi--G~G~aGl~aA~~~a~~G~~v~liEk 37 (557)
T PRK12844 5 ETYDVVVV--GSGGGGMCAALAAADSGLEPLIVEK 37 (557)
T ss_pred CcCCEEEE--CcCHHHHHHHHHHHHCCCcEEEEec
Confidence 35666665 4799999999999999999988753
No 399
>PRK10015 oxidoreductase; Provisional
Probab=30.74 E-value=80 Score=29.71 Aligned_cols=31 Identities=35% Similarity=0.421 Sum_probs=25.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
..+.+|+ ++|-.|.+.|+.+++.|+++.++=
T Consensus 5 ~~DViIV--GgGpAG~~aA~~LA~~G~~VlliE 35 (429)
T PRK10015 5 KFDAIVV--GAGVAGSVAALVMARAGLDVLVIE 35 (429)
T ss_pred ccCEEEE--CcCHHHHHHHHHHHhCCCeEEEEe
Confidence 4566665 479999999999999999977763
No 400
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=30.73 E-value=1.8e+02 Score=25.50 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=16.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEE
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVF 38 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv 38 (295)
.+++.+.+|..|.+++..|+.+|.+.+++
T Consensus 148 ~vlI~g~~g~vg~~~~~la~~~G~~vi~~ 176 (323)
T TIGR02823 148 PVLVTGATGGVGSLAVAILSKLGYEVVAS 176 (323)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCeEEEE
Confidence 34443334667777777777777654433
No 401
>PRK07538 hypothetical protein; Provisional
Probab=30.66 E-value=77 Score=29.41 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=23.7
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
+++. ++|=.|.++|...++.|++++||=.
T Consensus 3 V~IV-GaG~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 3 VLIA-GGGIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred EEEE-CCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 3443 5799999999999999999888743
No 402
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=30.64 E-value=70 Score=29.50 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=24.3
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
.+.+|+ ++|-.|.++|+..++.|++++|+=
T Consensus 3 ~dV~IV--GaG~aGl~~A~~L~~~G~~v~viE 32 (405)
T PRK05714 3 ADLLIV--GAGMVGSALALALQGSGLEVLLLD 32 (405)
T ss_pred ccEEEE--CccHHHHHHHHHHhcCCCEEEEEc
Confidence 344444 579999999999999999998874
No 403
>PRK07814 short chain dehydrogenase; Provisional
Probab=30.64 E-value=3.4e+02 Score=23.05 Aligned_cols=71 Identities=18% Similarity=0.126 Sum_probs=39.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEE--ecCchhHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA--VDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~--~~~~~~~~~~~~~~~~~~ 81 (295)
+.+++.+++|--|.+++......|.+++++... .+........++..|.++.. ++-.-.+...+++++..+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~--~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAART--ESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 345555667889999998888899987766543 11111122334445655544 343333444444444433
No 404
>PRK09224 threonine dehydratase; Reviewed
Probab=30.43 E-value=5e+02 Score=25.11 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=20.7
Q ss_pred EEecCCchhHHHhhhhhhcCCCceEEEeecCCCC
Q 022573 130 LACVGSGSNALGLFHEFINDEDVRLIGVEAAGFG 163 (295)
Q Consensus 130 vv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~~~ 163 (295)
|+..++|-+..|++.+.+ ....+++.|-|...+
T Consensus 71 vV~aSaGNha~avA~aa~-~lGi~~~IvmP~~tp 103 (504)
T PRK09224 71 VITASAGNHAQGVALSAA-RLGIKAVIVMPVTTP 103 (504)
T ss_pred EEEECcCHHHHHHHHHHH-HcCCCEEEEECCCCC
Confidence 344568888778876653 344566667776653
No 405
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=30.35 E-value=1.8e+02 Score=30.55 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=25.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
.+|+. ++||.|.-+|..+.++|-+++++...
T Consensus 449 ~VvVI-GGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 449 EVFVI-GGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 34443 57999999999999999998888765
No 406
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=30.33 E-value=81 Score=29.96 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=26.5
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
..+.+|+ ++|-.|.+.|..++++|.++.++=.
T Consensus 4 ~ydvvVI--G~GpaG~~aA~~aa~~G~~v~lie~ 35 (472)
T PRK05976 4 EYDLVII--GGGPGGYVAAIRAGQLGLKTALVEK 35 (472)
T ss_pred cccEEEE--CCCHHHHHHHHHHHhCCCeEEEEEc
Confidence 4566666 4799999999999999999988853
No 407
>PRK05717 oxidoreductase; Validated
Probab=30.31 E-value=3.3e+02 Score=22.88 Aligned_cols=31 Identities=13% Similarity=0.026 Sum_probs=23.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
+.+++++++|.-|.++|..-...|.+++++-
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~ 41 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLAD 41 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEc
Confidence 3455557779999999999999998776653
No 408
>PRK08329 threonine synthase; Validated
Probab=30.30 E-value=4.2e+02 Score=24.07 Aligned_cols=36 Identities=8% Similarity=0.010 Sum_probs=25.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHc---C-----CceEEEeeCC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKL---A-----LDCTVFMGTA 42 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~---G-----~~~~vv~p~~ 42 (295)
.++.+|+..++|-+..+++...+.+ | .+.+.|.|..
T Consensus 204 ~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g 247 (347)
T PRK08329 204 VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEG 247 (347)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Confidence 4788888777777777777777765 3 3567777764
No 409
>PRK06753 hypothetical protein; Provisional
Probab=30.20 E-value=81 Score=28.59 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=23.4
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
+++. ++|-.|.++|...++.|++++|+=
T Consensus 3 V~Iv-GgG~aGl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 3 IAII-GAGIGGLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred EEEE-CCCHHHHHHHHHHHhCCCcEEEEe
Confidence 4443 579999999999999999988864
No 410
>PRK12831 putative oxidoreductase; Provisional
Probab=30.17 E-value=82 Score=30.01 Aligned_cols=32 Identities=38% Similarity=0.615 Sum_probs=25.9
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
.+++.+|+ ++|-.|.+.|+..+++|++++||=
T Consensus 139 ~~~~V~II--G~GpAGl~aA~~l~~~G~~V~v~e 170 (464)
T PRK12831 139 KGKKVAVI--GSGPAGLTCAGDLAKMGYDVTIFE 170 (464)
T ss_pred CCCEEEEE--CcCHHHHHHHHHHHhCCCeEEEEe
Confidence 45555554 479999999999999999998883
No 411
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=30.15 E-value=2e+02 Score=27.16 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=27.1
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|.-+|..-+.+|.+++++.+.
T Consensus 166 ~~~vvII-GgG~~g~E~A~~l~~~g~~Vtli~~~ 198 (463)
T TIGR02053 166 PESLAVI-GGGAIGVELAQAFARLGSEVTILQRS 198 (463)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 3455554 57999999999999999999999865
No 412
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=30.10 E-value=1.9e+02 Score=27.13 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=25.0
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|.-+|...+.+|.+++++.+.
T Consensus 158 ~~~v~Vi-GgG~~g~E~A~~l~~~g~~Vtli~~~ 190 (441)
T PRK08010 158 PGHLGIL-GGGYIGVEFASMFANFGSKVTILEAA 190 (441)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 3455554 57888888888888899998888654
No 413
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=30.05 E-value=1.3e+02 Score=21.96 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=32.2
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEec
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 65 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~ 65 (295)
..++.+|+....=..-..++..++.++=...+++.-.+++ ..+.++..|++.+..|
T Consensus 61 ~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~----~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 61 EKADAVVILTDDDEENLLIALLARELNPDIRIIARVNDPE----NAELLRQAGADHVISP 116 (116)
T ss_dssp GCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHH----HHHHHHHTT-SEEEEH
T ss_pred cccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHH----HHHHHHHCCcCEEECc
Confidence 4566677653223355667777777655455555443322 3447788999887654
No 414
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=29.99 E-value=79 Score=29.58 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
|||-.|.++|..+...|.+++++...
T Consensus 212 SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 212 SSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 47889999999999999998887643
No 415
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=29.97 E-value=2.8e+02 Score=25.20 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=32.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC-CCcccchhhHHHHHHcCCEEEEecC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT-ADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~-~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
.++.++++ +++..+..++..+....=+-.|++|. .-+ .-...++.+|++++.++.
T Consensus 90 ~~~~I~it-~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~----~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 90 TPANISVG-NGSDELIRSLLIATCLGGEGSILVAEPTFS----MYGILAQTLGIPVVRVGR 145 (374)
T ss_pred CHHHEEEc-CChHHHHHHHHHHHcCCCCCeEEEcCCChH----HHHHHHHHcCCEEEEecC
Confidence 45567663 55677776555554432222455655 221 234477999999998864
No 416
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=29.95 E-value=2.1e+02 Score=26.04 Aligned_cols=48 Identities=23% Similarity=0.192 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHcCCceEEEeeCCC-ccc-chhhH-HHHHHcCCEEEEecC
Q 022573 19 QHGVATAAACAKLALDCTVFMGTAD-MEK-QSSKV-LLMKLLGAQVKAVDG 66 (295)
Q Consensus 19 N~g~a~A~~a~~~G~~~~vv~p~~~-~~~-~~~~~-~~l~~~GA~v~~~~~ 66 (295)
|.+.|+..+++++|+.++++.|+.- +.. ..... +..+..|+++...+.
T Consensus 168 ~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d 218 (334)
T PRK01713 168 NMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDD 218 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcC
Confidence 5899999999999999999999852 211 00011 123557888876554
No 417
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=29.95 E-value=91 Score=25.92 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=31.0
Q ss_pred HHHHHHHHhC---CCCCEEEEecCCchhHHHh------hhhhhcCCCceEEEeecCCC
Q 022573 114 TRKQAMEKWG---GKPDVLLACVGSGSNALGL------FHEFINDEDVRLIGVEAAGF 162 (295)
Q Consensus 114 ~~~ei~~q~~---~~~d~vvv~vG~Gg~~~G~------~~~~~~~~~~~vi~ve~~~~ 162 (295)
..+++.++.+ .++|.|++..|=|+ ++|+ ++++....+.++++|.....
T Consensus 40 ~i~~~l~~~~~~~~~i~~iav~~GPGS-fTGlRig~~~akgla~~~~~p~~~vssL~~ 96 (202)
T TIGR03725 40 MIEELLAEAGLSLQDLDAIAVGVGPGS-FTGLRIGLATAKGLALALGIPLVGVSSLEA 96 (202)
T ss_pred HHHHHHHHcCCCHHHCCEEEEecCCCh-HHhHHHHHHHHHHHHHHhCCCEEecCHHHH
Confidence 3344445443 35899999999865 5566 33443356788999876653
No 418
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=29.92 E-value=79 Score=33.20 Aligned_cols=55 Identities=27% Similarity=0.241 Sum_probs=38.4
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCC---------Ccc------cchhhHHHHHHcCCEEE
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTA---------DME------KQSSKVLLMKLLGAQVK 62 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~---------~~~------~~~~~~~~l~~~GA~v~ 62 (295)
.|++..|+ ++|-.|.+.|+..++.|++++||=... -|+ .....++.++.+|.+++
T Consensus 305 ~gkkVaVI--GsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~ 374 (944)
T PRK12779 305 VKPPIAVV--GSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFV 374 (944)
T ss_pred CCCeEEEE--CCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEE
Confidence 35555554 579999999999999999999994321 111 11224567888999875
No 419
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=29.80 E-value=87 Score=31.12 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=27.5
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
..+.+|+ ++|-.|...|+.+++.|+++.++-+.
T Consensus 4 ~yDVIVV--GGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 4 EYDVIVV--GGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred cceEEEE--CchHHHHHHHHHHHHcCCcEEEEecc
Confidence 3565665 57999999999999999999999765
No 420
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=29.76 E-value=87 Score=28.89 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
.+.+|+ ++|-.|.++|..-++.|++++|+=..
T Consensus 3 ~dV~IV--GaG~aGl~~A~~L~~~G~~v~viE~~ 34 (390)
T TIGR02360 3 TQVAII--GAGPSGLLLGQLLHKAGIDNVILERQ 34 (390)
T ss_pred ceEEEE--CccHHHHHHHHHHHHCCCCEEEEECC
Confidence 344444 58999999999999999999887543
No 421
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=29.76 E-value=1.9e+02 Score=24.01 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=37.4
Q ss_pred cccCCcEEEEeCCCChHHH-HHHHHHHHcCCceEEEeeCC-C----cccchhhHHHHHHcCCEEEE
Q 022573 4 KRMGRKSIVAATGAGQHGV-ATAAACAKLALDCTVFMGTA-D----MEKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 4 ~~~~~~~~V~~~ssGN~g~-a~A~~a~~~G~~~~vv~p~~-~----~~~~~~~~~~l~~~GA~v~~ 63 (295)
++.+.+++|+++-..|.|+ +.|.-|..+|++++|+-.-. + ++.....++.|+..|++|+.
T Consensus 138 ~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t 203 (212)
T PRK11609 138 REHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYT 203 (212)
T ss_pred HHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEE
Confidence 3456777887766677654 56666677888888776653 1 11112245566677887763
No 422
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.75 E-value=76 Score=31.59 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=26.2
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
..++.+|+ ++|..|.+.|..|+..|.+++++-
T Consensus 7 ~~~DVvVI--G~G~AGl~AAl~Aae~G~~V~lie 38 (626)
T PRK07803 7 HSYDVVVI--GAGGAGLRAAIEARERGLRVAVVC 38 (626)
T ss_pred eeecEEEE--CcCHHHHHHHHHHHHCCCCEEEEe
Confidence 34666666 479999999999999999988864
No 423
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=29.68 E-value=1.9e+02 Score=27.19 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=26.7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|..+|...+++|.+++++-+.
T Consensus 170 ~~~vvVi-GgG~~g~e~A~~l~~~g~~Vtli~~~ 202 (461)
T TIGR01350 170 PESLVII-GGGVIGIEFASIFASLGSKVTVIEML 202 (461)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 3455554 57999999999999999999988764
No 424
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=29.67 E-value=2e+02 Score=27.60 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=26.9
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|.-+|...+.+|.+++++...
T Consensus 180 ~~~vvII-GgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 180 PGKTLVV-GASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCCEEEE-CCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 3455554 57999999999999999999999753
No 425
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=29.66 E-value=74 Score=29.10 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.3
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
.+.+|+ ++|-.|.++|...++.|++++++=.
T Consensus 6 ~dViIv--GgG~aGl~~A~~La~~G~~V~liE~ 36 (391)
T PRK08020 6 TDIAIV--GGGMVGAALALGLAQHGFSVAVLEH 36 (391)
T ss_pred ccEEEE--CcCHHHHHHHHHHhcCCCEEEEEcC
Confidence 455554 5799999999999999999888754
No 426
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=29.56 E-value=80 Score=27.93 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=23.9
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++|=.|.++|+..++.|.+++|+=+.
T Consensus 6 GaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 6 GAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp CTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 57999999999999999999998766
No 427
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=29.55 E-value=1.9e+02 Score=25.93 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=10.9
Q ss_pred CChHHHHHHHHHHHcCCc
Q 022573 17 AGQHGVATAAACAKLALD 34 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~ 34 (295)
+|..|.+++..|+.+|..
T Consensus 175 ~g~iG~~~~~lak~~G~~ 192 (351)
T cd08285 175 IGPVGLMAVAGARLRGAG 192 (351)
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 455666666666666654
No 428
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=29.51 E-value=95 Score=30.36 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=27.1
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
...++.+|+ ++|..|.+.|..++..|++++++=.
T Consensus 5 ~~~~DvvVv--G~G~aG~~aA~~aa~~G~~v~llEk 38 (557)
T PRK07843 5 VQEYDVVVV--GSGAAGMVAALTAAHRGLSTVVVEK 38 (557)
T ss_pred CCcCCEEEE--CcCHHHHHHHHHHHHCCCCEEEEeC
Confidence 345676665 4799999999999999999888753
No 429
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=29.47 E-value=4.2e+02 Score=23.84 Aligned_cols=147 Identities=13% Similarity=0.074 Sum_probs=70.1
Q ss_pred EEeCCCCh-----HHHHHHHHHHHcCCceEEEeeCC-CcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCC
Q 022573 12 VAATGAGQ-----HGVATAAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEK 85 (295)
Q Consensus 12 V~~~ssGN-----~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~ 85 (295)
++..+.+| ...++-.+|+.+|+.+++..|.. +.+.+..-++.+...|.+.+.+.....++....++++.+. .-
T Consensus 28 ~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~-gI 106 (336)
T PRK15408 28 FIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQR-GV 106 (336)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHC-CC
Confidence 34344565 34456677888999998766653 3333223445666778887666543333344444444433 12
Q ss_pred ceeeeCcccCCCCCch-hhhhh-hhhhhHHHHHHHHHHhC-CCCCEEEEecCCch--h----HHHhhhhhh-cCCCceEE
Q 022573 86 SYYLTGTVVGPHPCPI-MVREF-QSIIGKETRKQAMEKWG-GKPDVLLACVGSGS--N----ALGLFHEFI-NDEDVRLI 155 (295)
Q Consensus 86 ~~~~~~~~~~~~p~~~-~~~~g-~~~~~~e~~~ei~~q~~-~~~d~vvv~vG~Gg--~----~~G~~~~~~-~~~~~~vi 155 (295)
+....+..... +... ++..+ ....+...++.+.+.++ ..-...++ .|+-+ . ..|....++ ..|..+++
T Consensus 107 pVV~~d~~~~~-~~~~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il-~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv 184 (336)
T PRK15408 107 KVLTWDSDTKP-ECRSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFF-YSSPTVTDQNQWVKEAKAKIAKEHPGWEIV 184 (336)
T ss_pred eEEEeCCCCCC-ccceEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCccHHHHHHHHHHHHHhhCCCCEEE
Confidence 33333322111 1111 12111 12345555555656665 33344343 33221 1 123333342 36788888
Q ss_pred EeecCC
Q 022573 156 GVEAAG 161 (295)
Q Consensus 156 ~ve~~~ 161 (295)
..+...
T Consensus 185 ~~~~~~ 190 (336)
T PRK15408 185 TTQFGY 190 (336)
T ss_pred eecCCC
Confidence 765444
No 430
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=29.42 E-value=87 Score=31.47 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=25.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
..+++. ++|=.|.++|.+.++.|++++||=.
T Consensus 82 ~~VlIV-GgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 82 SRVLVA-GGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred CCEEEE-CCCHHHHHHHHHHHhcCCeEEEEec
Confidence 334443 5899999999999999999999853
No 431
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=29.40 E-value=77 Score=31.76 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=27.2
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
...++.+|+ ++|..|...|..|+..|++++++-
T Consensus 3 ~~~~DVlVI--G~G~AGl~AAi~Aae~G~~Vivle 35 (657)
T PRK08626 3 IIYTDALVI--GAGLAGLRVAIAAAQRGLDTIVLS 35 (657)
T ss_pred ceeccEEEE--CccHHHHHHHHHHHHcCCCEEEEe
Confidence 455676666 479999999999999999988874
No 432
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=29.32 E-value=75 Score=28.80 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++|-.|.++|+.-++.|++++|+=..
T Consensus 6 GaG~aGl~~A~~L~~~G~~v~v~Er~ 31 (385)
T TIGR01988 6 GGGMVGLALALALARSGLKIALIEAT 31 (385)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 57999999999999999998887544
No 433
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=29.32 E-value=2.3e+02 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=35.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCc-eEEEeeCCC--cccchhhHHHHHHcCCEEEEe
Q 022573 10 SIVAATGAGQHGVATAAACAKLALD-CTVFMGTAD--MEKQSSKVLLMKLLGAQVKAV 64 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~-~~vv~p~~~--~~~~~~~~~~l~~~GA~v~~~ 64 (295)
.+|+. ++|+.|.-+|......|.+ ++++.+... .+.....++.++..|.+++.-
T Consensus 174 ~vvVi-G~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 174 KVVVV-GAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeec
Confidence 45553 5799999999888888998 888876421 111012345677788777643
No 434
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=29.30 E-value=3.4e+02 Score=22.62 Aligned_cols=54 Identities=17% Similarity=0.043 Sum_probs=33.5
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+++.+++|-.|.+++....+.|.+++++.... +..+.....++..+.++..+..
T Consensus 4 vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 4 ALVTGAASGIGLAIALALAAAGANVVVNDLGE--AGAEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred EEEcCCcchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEC
Confidence 45556678899999999888999877765442 1111112234455667765544
No 435
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=29.24 E-value=1.8e+02 Score=27.45 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=26.2
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|.-+|...+++|.+++++.+.
T Consensus 170 ~~~vvII-GgG~iG~E~A~~l~~~g~~Vtli~~~ 202 (458)
T PRK06912 170 PSSLLIV-GGGVIGCEFASIYSRLGTKVTIVEMA 202 (458)
T ss_pred CCcEEEE-CCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 3455554 57999999999999999999888654
No 436
>PRK14727 putative mercuric reductase; Provisional
Probab=29.18 E-value=95 Score=29.63 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=27.0
Q ss_pred cccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 4 KRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 4 ~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
.....+.+|+ ++|-.|.+.|..++++|.++.++=
T Consensus 13 ~~~~~dvvvI--G~G~aG~~~a~~~~~~g~~v~~ie 46 (479)
T PRK14727 13 SKLQLHVAII--GSGSAAFAAAIKAAEHGARVTIIE 46 (479)
T ss_pred CCCCCcEEEE--CCCHHHHHHHHHHHhCCCeEEEEE
Confidence 3444565555 479999999999999999988874
No 437
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=29.17 E-value=3.4e+02 Score=22.58 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=38.6
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHH
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWV 80 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~ 80 (295)
+++.+++|.-|.+++..-...|..++++.... +..+.....++..+.++..+..+. .+...++++...
T Consensus 6 ilItGas~~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 6 AIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR--EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAE 75 (250)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEecCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 44446678999999999888998877665432 111112223455566665555532 333444444333
No 438
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=29.12 E-value=1.9e+02 Score=27.46 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=26.7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|..+|...+++|.+++++.+.
T Consensus 183 ~~~vvVv-GgG~~g~E~A~~l~~~g~~Vtli~~~ 215 (475)
T PRK06327 183 PKKLAVI-GAGVIGLELGSVWRRLGAEVTILEAL 215 (475)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3555664 57999999999999999999988754
No 439
>PRK14694 putative mercuric reductase; Provisional
Probab=29.10 E-value=94 Score=29.52 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=27.6
Q ss_pred cccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 4 KRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 4 ~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
.....+.+|+ ++|-.|.+.|..++++|+++.+|=
T Consensus 3 ~~~~~dviVI--GaG~aG~~aA~~l~~~g~~v~lie 36 (468)
T PRK14694 3 SDNNLHIAVI--GSGGSAMAAALKATERGARVTLIE 36 (468)
T ss_pred CCCcCCEEEE--CCCHHHHHHHHHHHhCCCcEEEEE
Confidence 3456676666 479999999999999999988874
No 440
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=29.08 E-value=3.1e+02 Score=22.23 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=8.1
Q ss_pred CChHHHHHHHHHHHcCC
Q 022573 17 AGQHGVATAAACAKLAL 33 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~ 33 (295)
+|..|.+++......|.
T Consensus 37 tG~iG~~~a~~l~~~g~ 53 (194)
T cd01078 37 TGPVGQRAAVLLAREGA 53 (194)
T ss_pred CCHHHHHHHHHHHHCCC
Confidence 35555554444444443
No 441
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.06 E-value=88 Score=30.68 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=26.5
Q ss_pred cCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 6 ~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
..++.+|+ ++|-.|.+.|..|+..|.+++|+-
T Consensus 4 ~~~DVvVV--G~G~AGl~AAl~Aae~G~~V~lve 35 (566)
T PRK06452 4 IEYDAVVI--GGGLAGLMSAHEIASAGFKVAVIS 35 (566)
T ss_pred ccCcEEEE--CccHHHHHHHHHHHHCCCcEEEEE
Confidence 45676666 479999999999999999998875
No 442
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=29.02 E-value=87 Score=28.79 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=24.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
+.+|+ ++|-.|.++|+..++.|++++++=.
T Consensus 2 DVvIV--GaGpAG~~aA~~La~~G~~V~l~E~ 31 (388)
T TIGR02023 2 DVAVI--GGGPSGATAAETLARAGIETILLER 31 (388)
T ss_pred eEEEE--CCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 33444 5899999999999999999877643
No 443
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=29.00 E-value=1.2e+02 Score=25.82 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=26.4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
...+++.+.+|..|..++......|.+++++...
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 3445555778999999999988889988777644
No 444
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=28.99 E-value=95 Score=26.97 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=25.9
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
..+.+|+ ++|-.|.+.|+.+++.|+++.++=.
T Consensus 25 ~~DVvIV--GgGpAGl~AA~~la~~G~~V~liEk 56 (257)
T PRK04176 25 EVDVAIV--GAGPSGLTAAYYLAKAGLKVAVFER 56 (257)
T ss_pred cCCEEEE--CccHHHHHHHHHHHhCCCeEEEEec
Confidence 3565555 5799999999999999999888753
No 445
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.99 E-value=3.3e+02 Score=22.45 Aligned_cols=32 Identities=13% Similarity=-0.018 Sum_probs=25.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
.+++.+++|..|.+++......|.+++++...
T Consensus 7 ~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 7 KVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 44455677899999999999999988877654
No 446
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=28.98 E-value=1.7e+02 Score=26.57 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=7.6
Q ss_pred CCEEEEecCCch
Q 022573 126 PDVLLACVGSGS 137 (295)
Q Consensus 126 ~d~vvv~vG~Gg 137 (295)
+|.+|=++|+..
T Consensus 248 ~D~vid~~g~~~ 259 (360)
T PLN02586 248 MDYIIDTVSAVH 259 (360)
T ss_pred CCEEEECCCCHH
Confidence 677777776433
No 447
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=28.80 E-value=1.2e+02 Score=26.26 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=24.9
Q ss_pred EEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 12 VAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 12 V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++|+.|..++-.-...|.++++++..
T Consensus 3 lVtGatG~iG~~vv~~L~~~g~~V~~~~R~ 32 (285)
T TIGR03649 3 LLTGGTGKTASRIARLLQAASVPFLVASRS 32 (285)
T ss_pred EEEcCCChHHHHHHHHHHhCCCcEEEEeCC
Confidence 344678999999999988899998888765
No 448
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=28.78 E-value=3.6e+02 Score=22.80 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=25.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+.+++.+++|..|.++|......|.+++++...
T Consensus 10 k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 10 KIIIVTGGSSGIGLAIVKELLANGANVVNADIH 42 (266)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 455555667889999999998999987776543
No 449
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=28.75 E-value=2.4e+02 Score=23.58 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCC
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTAD 43 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~ 43 (295)
+++.+|+ ++|.-|..-+......|-.++|+-|+-.
T Consensus 9 gk~vlVv--GgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVV--GGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEE--CcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 4444443 4788888888777788888888877643
No 450
>PRK08265 short chain dehydrogenase; Provisional
Probab=28.71 E-value=3.6e+02 Score=22.84 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=38.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC--chhHHHHHHHHHHHhc
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVGN 82 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~--~~~~~~~~~~~~~~~~ 82 (295)
+.+++.+++|--|.++|......|.+++++-.. .+. ..+..+..|.++..+.. .-.+...+++++..++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~--~~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDID--ADN---GAAVAASLGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC--HHH---HHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 345555667889999999999999976665432 111 11133445666654443 2233444444444333
No 451
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=28.70 E-value=1.1e+02 Score=25.44 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=23.8
Q ss_pred EEEeCHHHHH-HHHHHHHHHhCCCCCc-chhhHHHHH
Q 022573 226 FYTATDQEAV-QAYQRLCRLEGIFPAL-EASHALAFL 260 (295)
Q Consensus 226 ~~~V~d~e~~-~a~~~l~~~~gi~~~~-ssa~a~aa~ 260 (295)
++.|+|+++. ++..+|.+..|+.+.+ +++..+.+.
T Consensus 7 V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~ 43 (202)
T COG4566 7 VHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAA 43 (202)
T ss_pred EEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhh
Confidence 5667666655 8899999999998444 445555553
No 452
>PRK08013 oxidoreductase; Provisional
Probab=28.69 E-value=88 Score=28.90 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=25.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
.+.+|+ ++|-.|.++|+.-++.|++++|+=..
T Consensus 4 ~dV~Iv--GaGpaGl~~A~~La~~G~~v~viE~~ 35 (400)
T PRK08013 4 VDVVIA--GGGMVGLAVACGLQGSGLRVAVLEQR 35 (400)
T ss_pred CCEEEE--CcCHHHHHHHHHHhhCCCEEEEEeCC
Confidence 344444 57999999999999999999887543
No 453
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=28.65 E-value=3.7e+02 Score=22.86 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeecCCCC
Q 022573 111 GKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFG 163 (295)
Q Consensus 111 ~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~~~ 163 (295)
+..++.+| +++....+.+|.+.--||.-.|.-.+-+.+-+..++.|..-+.+
T Consensus 11 Gr~La~~l-~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P 62 (220)
T COG1926 11 GRKLAQEL-AALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAP 62 (220)
T ss_pred HHHHHHHH-HhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCC
Confidence 45566665 34433578899999999988776544345777888889888864
No 454
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=28.65 E-value=3.7e+02 Score=24.37 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=17.7
Q ss_pred CCCEEEEecCCchhHHHhhhhhhcCCCceEEEeecC
Q 022573 125 KPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAA 160 (295)
Q Consensus 125 ~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~ 160 (295)
++| +|+++|+|..+ =++++....+.+++|.|-+.
T Consensus 80 ~~d-~IIaIGGGs~~-D~aK~vA~~~~~p~i~IPTT 113 (348)
T cd08175 80 DTD-LIIAVGSGTIN-DITKYVSYKTGIPYISVPTA 113 (348)
T ss_pred cCC-EEEEECCcHHH-HHHHHHHHhcCCCEEEecCc
Confidence 455 56777777653 22222212234567777655
No 455
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.61 E-value=1.9e+02 Score=25.62 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=13.1
Q ss_pred CChHHHHHHHHHHHcCCceEEEe
Q 022573 17 AGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
+|..|.++...++..|.+.++.+
T Consensus 177 ~g~vg~~~~~lak~~G~~~v~~~ 199 (345)
T cd08287 177 DGAVGLCAVLAAKRLGAERIIAM 199 (345)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEE
Confidence 46666666666666666533333
No 456
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=28.59 E-value=3.4e+02 Score=22.40 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=33.1
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCc
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~ 67 (295)
+++.+.+|.-|..+|......|.+++++..... .........+...+.++..+..+
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D 58 (242)
T TIGR01829 3 ALVTGGMGGIGTAICQRLAKDGYRVAANCGPNE-ERAEAWLQEQGALGFDFRVVEGD 58 (242)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhhCCceEEEEec
Confidence 445566788999999999999998776654221 11111122344456666555443
No 457
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=28.55 E-value=3.7e+02 Score=22.89 Aligned_cols=61 Identities=5% Similarity=-0.008 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCceEEEeeCC-CcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhc
Q 022573 22 VATAAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82 (295)
Q Consensus 22 ~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~ 82 (295)
.-+...|+.+|+|.+.+.-.. .........+.++..|.+.+..+.-+.+.....+++.+++
T Consensus 48 ~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~ 109 (222)
T TIGR00289 48 HLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIESNYQKSRIDKVCRE 109 (222)
T ss_pred HHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHH
Confidence 345578888999976554322 1111122334567779888888884333333334555555
No 458
>PRK13748 putative mercuric reductase; Provisional
Probab=28.55 E-value=2.1e+02 Score=27.84 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=26.8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|.-+|...+.+|.+++++.+.
T Consensus 270 ~~~vvVi-GgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVI-GSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 3455554 57999999999999999999998753
No 459
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=28.54 E-value=3.3e+02 Score=25.86 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=44.5
Q ss_pred CCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchh----HHHHHHHHHHHhc-----cCCcee-eeCcccCCCCCch
Q 022573 32 ALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK----EASSEAIRNWVGN-----LEKSYY-LTGTVVGPHPCPI 101 (295)
Q Consensus 32 G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~p~~~ 101 (295)
+.--+|.+-+-+ -..-++.++.+|++++-++-+-+ |..++.++.+.-. .+.-+| |+++. ||-+.
T Consensus 146 N~gd~vlie~~t---y~~AL~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgq---NPTG~ 219 (472)
T KOG0634|consen 146 NRGDHVLIEEYT---YPSALQSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQ---NPTGN 219 (472)
T ss_pred cCCCceEEeccc---chHHHHhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCC---CCCCC
Confidence 445566665522 12456799999999988876332 3333333222111 112233 33332 66542
Q ss_pred hhhhhhhhhhHHHHHHHHHHhCCCCCEEEEe
Q 022573 102 MVREFQSIIGKETRKQAMEKWGGKPDVLLAC 132 (295)
Q Consensus 102 ~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~ 132 (295)
++..|..++|. |+..+.|.+||.
T Consensus 220 -------tls~errk~iy-~LArKyDfLIVe 242 (472)
T KOG0634|consen 220 -------TLSLERRKKIY-QLARKYDFLIVE 242 (472)
T ss_pred -------ccCHHHHHHHH-HHHHHcCEEEEe
Confidence 34566666654 344567777664
No 460
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=28.52 E-value=2e+02 Score=25.46 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=13.8
Q ss_pred CChHHHHHHHHHHHcCCceEEEe
Q 022573 17 AGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
+|..|.++...|+.+|.++++..
T Consensus 156 ~g~vg~~~~~~a~~~g~~v~~~~ 178 (341)
T cd08290 156 NSAVGQAVIQLAKLLGIKTINVV 178 (341)
T ss_pred hhHHHHHHHHHHHHcCCeEEEEE
Confidence 36666666666666666554444
No 461
>PRK13984 putative oxidoreductase; Provisional
Probab=28.49 E-value=1.6e+02 Score=28.99 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=36.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCc---------------ccchhhHHHHHHcCCEEEE
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADM---------------EKQSSKVLLMKLLGAQVKA 63 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~---------------~~~~~~~~~l~~~GA~v~~ 63 (295)
+.+++. ++|-.|.+.|...++.|++++|+=..... +........++.+|.+++.
T Consensus 284 ~~v~II-GaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIV-GSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEE-CCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 334544 47999999999999999999988332100 0012245678889988753
No 462
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=28.48 E-value=87 Score=28.60 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=25.4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHc---CCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKL---ALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~---G~~~~vv~p 40 (295)
.+.+|+ ++|-.|.++|+..++. |++++|+=.
T Consensus 4 ~dv~Iv--GaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 4 MDVIIV--GGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CCEEEE--CcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 444454 5799999999999998 999998865
No 463
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=28.45 E-value=2e+02 Score=25.22 Aligned_cols=11 Identities=36% Similarity=0.531 Sum_probs=7.2
Q ss_pred CCCEEEEecCC
Q 022573 125 KPDVLLACVGS 135 (295)
Q Consensus 125 ~~d~vvv~vG~ 135 (295)
.+|.|+-++|+
T Consensus 207 ~vd~v~~~~g~ 217 (329)
T cd08250 207 GVDVVYESVGG 217 (329)
T ss_pred CCeEEEECCcH
Confidence 46777776663
No 464
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=28.43 E-value=95 Score=27.88 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHcCCceEEEeeCC
Q 022573 18 GQHGVATAAACAKLALDCTVFMGTA 42 (295)
Q Consensus 18 GN~g~a~A~~a~~~G~~~~vv~p~~ 42 (295)
+|.+.|++.+++++|+.++++.|+.
T Consensus 168 ~~v~~Sl~~~~~~~g~~~~~~~P~~ 192 (305)
T PRK00856 168 SRVARSNIQALTRLGAEVRLIAPPT 192 (305)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCcc
Confidence 6899999999999999999999985
No 465
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=28.34 E-value=2.2e+02 Score=28.44 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=37.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCc---------------ccchhhHHHHHHcCCEEEEe
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADM---------------EKQSSKVLLMKLLGAQVKAV 64 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~---------------~~~~~~~~~l~~~GA~v~~~ 64 (295)
.+++. ++|-.|.+.|+..++.|+++++|=..... +.....++.++.+|.++..-
T Consensus 195 ~VaII-GaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 195 KVAII-GAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 34443 57999999999999999999998543211 00112356778899988643
No 466
>PRK12746 short chain dehydrogenase; Provisional
Probab=28.33 E-value=3.5e+02 Score=22.58 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=33.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
..+++.+++|--|.++|....+.|.++++....+. +......+.++..+.++..+..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~-~~~~~~~~~~~~~~~~~~~~~~ 63 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNK-QAADETIREIESNGGKAFLIEA 63 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCcEEEEEc
Confidence 44555567788999999988888988766543321 1111122234444666655544
No 467
>PRK08163 salicylate hydroxylase; Provisional
Probab=28.26 E-value=95 Score=28.43 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=24.7
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+++. ++|=.|.++|...++.|++++|+=..
T Consensus 7 V~Iv-GaGiaGl~~A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 7 VLIV-GGGIGGLAAALALARQGIKVKLLEQA 36 (396)
T ss_pred EEEE-CCcHHHHHHHHHHHhCCCcEEEEeeC
Confidence 4443 57999999999999999999988543
No 468
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=28.19 E-value=1.6e+02 Score=24.37 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeecCCC
Q 022573 112 KETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGF 162 (295)
Q Consensus 112 ~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~~ 162 (295)
.|+-......|..+++-++.-+|.|+..-++-.+ ...|.-||+++|....
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~ 69 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEE 69 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHH
Confidence 3443334566778888899999888776677544 4689999999997653
No 469
>PRK05599 hypothetical protein; Provisional
Probab=28.19 E-value=3.6e+02 Score=22.66 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=34.0
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCC-EE--EEecCchhHHHHHHHHHHHh
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGA-QV--KAVDGCFKEASSEAIRNWVG 81 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA-~v--~~~~~~~~~~~~~~~~~~~~ 81 (295)
++++++++.-|.++|..-.+ |.+++++-.. .+..+...+.++..|. ++ +.++-.-.+....++++..+
T Consensus 3 vlItGas~GIG~aia~~l~~-g~~Vil~~r~--~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 73 (246)
T PRK05599 3 ILILGGTSDIAGEIATLLCH-GEDVVLAARR--PEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQE 73 (246)
T ss_pred EEEEeCccHHHHHHHHHHhC-CCEEEEEeCC--HHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHH
Confidence 34445566778888876664 8666655432 2222223344555554 23 44444333444444444443
No 470
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=28.15 E-value=92 Score=32.96 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=25.4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
++.+|+ ++|-.|.+.|+..++.|++++||=+
T Consensus 538 kkVaII--GGGPAGLSAA~~LAr~G~~VTV~Ek 568 (1012)
T TIGR03315 538 HKVAVI--GAGPAGLSAGYFLARAGHPVTVFEK 568 (1012)
T ss_pred CcEEEE--CCCHHHHHHHHHHHHCCCeEEEEec
Confidence 444444 5799999999999999999999853
No 471
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.13 E-value=3.8e+02 Score=22.81 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=22.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHcCCceEEEe
Q 022573 7 GRKSIVAATGA--GQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 7 ~~~~~V~~~ss--GN~g~a~A~~a~~~G~~~~vv~ 39 (295)
++..+|+ +++ +.-|.++|..-.+.|.++++.-
T Consensus 7 ~k~~lIt-Ga~~s~GIG~aia~~la~~G~~v~~~~ 40 (257)
T PRK08594 7 GKTYVVM-GVANKRSIAWGIARSLHNAGAKLVFTY 40 (257)
T ss_pred CCEEEEE-CCCCCCCHHHHHHHHHHHCCCEEEEec
Confidence 3444444 433 5789999998889999877654
No 472
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=28.00 E-value=2.2e+02 Score=25.01 Aligned_cols=11 Identities=36% Similarity=0.447 Sum_probs=6.7
Q ss_pred CCCEEEEecCC
Q 022573 125 KPDVLLACVGS 135 (295)
Q Consensus 125 ~~d~vvv~vG~ 135 (295)
.+|.++-++|+
T Consensus 214 ~~d~vi~~~g~ 224 (329)
T cd05288 214 GIDVYFDNVGG 224 (329)
T ss_pred CceEEEEcchH
Confidence 46777666653
No 473
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=27.93 E-value=2.4e+02 Score=24.71 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=8.2
Q ss_pred ChHHHHHHHHHHHcCCc
Q 022573 18 GQHGVATAAACAKLALD 34 (295)
Q Consensus 18 GN~g~a~A~~a~~~G~~ 34 (295)
|..|.++...|+.+|++
T Consensus 151 g~ig~~~~~lak~~G~~ 167 (327)
T PRK10754 151 GGVGLIACQWAKALGAK 167 (327)
T ss_pred cHHHHHHHHHHHHcCCE
Confidence 44444444444444444
No 474
>PRK07201 short chain dehydrogenase; Provisional
Probab=27.90 E-value=5.2e+02 Score=25.48 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=41.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHhc
Q 022573 10 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVGN 82 (295)
Q Consensus 10 ~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~~ 82 (295)
.+++.+++|.-|.++|..-.+.|.+++++.... +........++..|.++..+..+. .+...+++++..++
T Consensus 373 ~vlItGas~giG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 373 VVLITGASSGIGRATAIKVAEAGATVFLVARNG--EALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 455556678899999988888898877765432 211222334555677766554432 33444454444443
No 475
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=27.85 E-value=2e+02 Score=25.24 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=12.6
Q ss_pred CChHHHHHHHHHHHcCCceEEE
Q 022573 17 AGQHGVATAAACAKLALDCTVF 38 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~~~~vv 38 (295)
+|..|.+++..++.+|++.+++
T Consensus 176 ~g~vg~~~~~la~~~g~~v~~~ 197 (329)
T cd08298 176 FGASAHLALQIARYQGAEVFAF 197 (329)
T ss_pred CcHHHHHHHHHHHHCCCeEEEE
Confidence 4556666666666666554333
No 476
>PRK06138 short chain dehydrogenase; Provisional
Probab=27.74 E-value=3.6e+02 Score=22.44 Aligned_cols=70 Identities=19% Similarity=0.114 Sum_probs=38.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCch--hHHHHHHHHHHHh
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 81 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~--~~~~~~~~~~~~~ 81 (295)
+.+++.+++|-.|.++|..-...|.+++++.... +........++ .|.++.....+. .+...++++...+
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDA--EAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAA 77 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH--HHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3455556678899999988888898766665331 11111222333 567665555432 2334444444433
No 477
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.73 E-value=2.8e+02 Score=26.71 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=34.7
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
.|+=.|||-+|.++|.++...|-+++++.-..+.. .-.|.+++.++.
T Consensus 275 ~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---------~p~~v~~i~V~t 321 (475)
T PRK13982 275 YIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---------DPQGVKVIHVES 321 (475)
T ss_pred eeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---------CCCCceEEEecC
Confidence 34445789999999999999999999998432211 115778888877
No 478
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=27.70 E-value=89 Score=29.25 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHcC-CceEEEe
Q 022573 16 GAGQHGVATAAACAKLA-LDCTVFM 39 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G-~~~~vv~ 39 (295)
++|..|.+.|+.+++.| .+++|+=
T Consensus 6 G~G~AGl~AA~~aa~~G~~~V~vlE 30 (439)
T TIGR01813 6 GSGFAGLSAALSAKKAGAANVVLLE 30 (439)
T ss_pred CCCHHHHHHHHHHHHcCCccEEEEe
Confidence 57999999999999999 8777754
No 479
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=27.67 E-value=2e+02 Score=25.25 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=9.1
Q ss_pred ChHHHHHHHHHHHcCCce
Q 022573 18 GQHGVATAAACAKLALDC 35 (295)
Q Consensus 18 GN~g~a~A~~a~~~G~~~ 35 (295)
|..|.++...++.+|+++
T Consensus 172 g~iG~~~~~~a~~~G~~v 189 (330)
T cd08245 172 GGLGHLAVQYARAMGFET 189 (330)
T ss_pred CHHHHHHHHHHHHCCCEE
Confidence 445555555555555543
No 480
>PRK06184 hypothetical protein; Provisional
Probab=27.64 E-value=91 Score=29.85 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=24.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
+.+|+ ++|-.|.++|...++.|++++|+=.
T Consensus 5 dVlIV--GaGpaGl~~A~~La~~Gi~v~viE~ 34 (502)
T PRK06184 5 DVLIV--GAGPTGLTLAIELARRGVSFRLIEK 34 (502)
T ss_pred cEEEE--CCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 44444 5799999999999999999998843
No 481
>PRK06370 mercuric reductase; Validated
Probab=27.61 E-value=90 Score=29.53 Aligned_cols=31 Identities=35% Similarity=0.452 Sum_probs=26.2
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
.+.+|+ ++|-.|.+.|..++++|.++.+|=.
T Consensus 6 ~DvvVI--G~GpaG~~aA~~aa~~G~~v~lie~ 36 (463)
T PRK06370 6 YDAIVI--GAGQAGPPLAARAAGLGMKVALIER 36 (463)
T ss_pred ccEEEE--CCCHHHHHHHHHHHhCCCeEEEEec
Confidence 676666 4799999999999999999998853
No 482
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=27.54 E-value=2e+02 Score=23.99 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEeecCCC
Q 022573 111 GKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGF 162 (295)
Q Consensus 111 ~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~~ 162 (295)
.-.+...+.+.++..+..-|+=+|+|........+-...+.-+|+++|....
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~ 112 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPE 112 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHH
Confidence 3344444555555455555666665543323222211245679999998863
No 483
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=27.48 E-value=1.9e+02 Score=26.02 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=10.3
Q ss_pred CChHHHHHHHHHHHcCC
Q 022573 17 AGQHGVATAAACAKLAL 33 (295)
Q Consensus 17 sGN~g~a~A~~a~~~G~ 33 (295)
+|..|.+++..|+.+|.
T Consensus 186 ~g~vG~~~~~lak~~G~ 202 (361)
T cd08231 186 AGPLGLYAVAAAKLAGA 202 (361)
T ss_pred CCHHHHHHHHHHHHcCC
Confidence 45666666666666665
No 484
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=27.48 E-value=1.8e+02 Score=24.33 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=7.0
Q ss_pred CCCEEEEecCC
Q 022573 125 KPDVLLACVGS 135 (295)
Q Consensus 125 ~~d~vvv~vG~ 135 (295)
.+|.++-++|+
T Consensus 201 ~~d~vi~~~~~ 211 (271)
T cd05188 201 GADVVIDAVGG 211 (271)
T ss_pred CCCEEEECCCC
Confidence 46777766654
No 485
>PRK06116 glutathione reductase; Validated
Probab=27.44 E-value=1e+02 Score=29.04 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=26.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
..+.+|+ ++|-.|.+.|..++++|.++.+|=.
T Consensus 4 ~~DvvVI--G~GpaG~~aA~~~a~~G~~V~liE~ 35 (450)
T PRK06116 4 DYDLIVI--GGGSGGIASANRAAMYGAKVALIEA 35 (450)
T ss_pred CCCEEEE--CCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3566666 4799999999999999999888753
No 486
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=27.44 E-value=1.4e+02 Score=25.46 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=17.8
Q ss_pred HHHHHcCCEEEEecCchhHHHHHH
Q 022573 52 LLMKLLGAQVKAVDGCFKEASSEA 75 (295)
Q Consensus 52 ~~l~~~GA~v~~~~~~~~~~~~~~ 75 (295)
...+.+|.+|+..+.+-.+..+.-
T Consensus 19 ~FF~~LG~~Vv~S~~T~k~i~~~G 42 (221)
T PF09989_consen 19 TFFTELGFEVVLSPPTNKEILDKG 42 (221)
T ss_pred HHHHHcCCEEEECCCCcHHHHHHH
Confidence 478999999999988655544444
No 487
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.44 E-value=1.8e+02 Score=25.92 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=33.8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
.+..|+ ++||.|.++|......|.+++++-+...... .+.++ .++++.+--
T Consensus 5 m~I~ii--G~G~~G~~lA~~l~~~G~~V~~~~r~~~~~~----~~~~~--~advvi~~v 55 (308)
T PRK14619 5 KTIAIL--GAGAWGSTLAGLASANGHRVRVWSRRSGLSL----AAVLA--DADVIVSAV 55 (308)
T ss_pred CEEEEE--CccHHHHHHHHHHHHCCCEEEEEeCCCCCCH----HHHHh--cCCEEEEEC
Confidence 344444 5799999999999999999988776532211 11222 677766544
No 488
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=27.38 E-value=2e+02 Score=24.63 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=24.2
Q ss_pred CCEEEEecCCchhHHHhhhhhhcCCCceEEEeecCCC
Q 022573 126 PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGF 162 (295)
Q Consensus 126 ~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve~~~~ 162 (295)
...+-+.+|+|..+..+...+ ..|..++++++++..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~-~~~~~~v~gvD~S~~ 93 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNI-HHDNCKIIAIDNSPA 93 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhc-CCCCCeEEEEeCCHH
Confidence 346667777777655544332 257789999998774
No 489
>PRK07775 short chain dehydrogenase; Provisional
Probab=27.33 E-value=4e+02 Score=22.83 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=34.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC
Q 022573 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66 (295)
Q Consensus 9 ~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~ 66 (295)
+.+++.+.+|-.|.+++......|.+++++... .+....-...++..|.++..+..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARR--VEKCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEEC
Confidence 355555667889999999888889876665532 11111112235556777765444
No 490
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=27.30 E-value=1e+02 Score=28.96 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=26.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
..+.+|+ ++|=.|.++|+..++.|+++.|+=.
T Consensus 5 ~~DViIV--GaGpAG~~aA~~La~~G~~V~llEr 36 (428)
T PRK10157 5 IFDAIIV--GAGLAGSVAALVLAREGAQVLVIER 36 (428)
T ss_pred cCcEEEE--CcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 4666665 4799999999999999999888743
No 491
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=27.25 E-value=85 Score=28.67 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=23.7
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
+++. ++|-.|.++|...++.|++++|+=
T Consensus 4 V~Iv-GgG~~Gl~~A~~L~~~G~~v~l~E 31 (374)
T PRK06617 4 TVIL-GCGLSGMLTALSFAQKGIKTTIFE 31 (374)
T ss_pred EEEE-CCCHHHHHHHHHHHcCCCeEEEec
Confidence 3443 589999999999999999998885
No 492
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=27.14 E-value=66 Score=22.33 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=24.5
Q ss_pred ccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 5 ~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
..+...+|++ .|+.-.-.|..||.+|+|+++=++.
T Consensus 28 ~~~~~Giv~~--~Gg~~SH~aIlAr~~giP~ivg~~~ 62 (80)
T PF00391_consen 28 LQRVAGIVTE--EGGPTSHAAILARELGIPAIVGVGD 62 (80)
T ss_dssp HTTSSEEEES--SSSTTSHHHHHHHHTT-EEEESTTT
T ss_pred hhheEEEEEE--cCCccchHHHHHHHcCCCEEEeecc
Confidence 4566778875 3554455688999999999997753
No 493
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=27.10 E-value=4.1e+02 Score=22.93 Aligned_cols=99 Identities=9% Similarity=0.028 Sum_probs=49.1
Q ss_pred HHHHHHHHHHc--CCceEEEeeCCCcccchhhHHHHHHcCCEEEEecCchhHHHHHHHHHHHhccCCceeeeCcccCCCC
Q 022573 21 GVATAAACAKL--ALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHP 98 (295)
Q Consensus 21 g~a~A~~a~~~--G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 98 (295)
|..+.++++++ |.+.. -+|. .+.-..-.+.....|-.|..+++..+ ..+++.+.+.++. +.-+.... |+
T Consensus 69 G~gvv~~~~~~~~~~~~~-Rv~G--~dl~~~ll~~~~~~~~~v~llG~~~~-v~~~a~~~l~~~y--~l~i~g~~---~G 139 (243)
T PRK03692 69 GISVVRSIRKKYPQAQVS-RVAG--ADLWEALMARAGKEGTPVFLVGGKPE-VLAQTEAKLRTQW--NVNIVGSQ---DG 139 (243)
T ss_pred CHHHHHHHHHhcCCCCCC-eeCh--HHHHHHHHHHHHhcCCeEEEECCCHH-HHHHHHHHHHHHh--CCEEEEEe---CC
Confidence 34566777666 43411 1222 12112223344567889999988643 4445555555543 22222111 33
Q ss_pred CchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCch
Q 022573 99 CPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGS 137 (295)
Q Consensus 99 ~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg 137 (295)
|... .-..++.++|.+ ..+|.++|+.|+-=
T Consensus 140 yf~~------~e~~~i~~~I~~---s~~dil~VglG~Pk 169 (243)
T PRK03692 140 YFTP------EQRQALFERIHA---SGAKIVTVAMGSPK 169 (243)
T ss_pred CCCH------HHHHHHHHHHHh---cCCCEEEEECCCcH
Confidence 3210 002335555533 46999999998654
No 494
>PTZ00052 thioredoxin reductase; Provisional
Probab=27.08 E-value=2.2e+02 Score=27.37 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.1
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEee
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMG 40 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p 40 (295)
++.+++. ++|..|.-+|...+.+|.+++++..
T Consensus 182 ~~~vvII-GgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 182 PGKTLIV-GASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 3455554 5799999999999999999999975
No 495
>PRK05868 hypothetical protein; Validated
Probab=27.06 E-value=1.1e+02 Score=28.08 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=23.7
Q ss_pred EEEeCCCChHHHHHHHHHHHcCCceEEEe
Q 022573 11 IVAATGAGQHGVATAAACAKLALDCTVFM 39 (295)
Q Consensus 11 ~V~~~ssGN~g~a~A~~a~~~G~~~~vv~ 39 (295)
+++. ++|-.|.++|...++.|++++|+=
T Consensus 4 V~Iv-GgG~aGl~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 4 VVVS-GASVAGTAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred EEEE-CCCHHHHHHHHHHHhCCCCEEEEc
Confidence 4553 589999999999999999988874
No 496
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=27.06 E-value=2.5e+02 Score=26.23 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=26.6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeC
Q 022573 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 8 ~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
++.+++. ++|..|.-+|...+++|.+++++.+.
T Consensus 149 ~~~vvVv-GgG~~g~e~A~~l~~~g~~Vtli~~~ 181 (444)
T PRK09564 149 IKNIVII-GAGFIGLEAVEAAKHLGKNVRIIQLE 181 (444)
T ss_pred CCEEEEE-CCCHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3555664 57999999999999999999988654
No 497
>PRK10262 thioredoxin reductase; Provisional
Probab=27.01 E-value=1.1e+02 Score=27.12 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHcCCceEEE
Q 022573 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVF 38 (295)
Q Consensus 7 ~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv 38 (295)
..+.+|+ ++|-.|.+.|..+++.|.+++++
T Consensus 6 ~~~vvII--GgGpaGl~aA~~l~~~g~~~~~i 35 (321)
T PRK10262 6 HSKLLIL--GSGPAGYTAAVYAARANLQPVLI 35 (321)
T ss_pred cCCEEEE--CCCHHHHHHHHHHHHCCCCeEEE
Confidence 4455554 47999999999999999998877
No 498
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=26.99 E-value=1.5e+02 Score=26.98 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=29.4
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEE
Q 022573 16 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 61 (295)
Q Consensus 16 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v 61 (295)
+.||.|.++|...+..|++++++.+..... ....+..|.++
T Consensus 24 G~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s-----~~~A~~~G~~~ 64 (330)
T PRK05479 24 GYGSQGHAHALNLRDSGVDVVVGLREGSKS-----WKKAEADGFEV 64 (330)
T ss_pred eeHHHHHHHHHHHHHCCCEEEEEECCchhh-----HHHHHHCCCee
Confidence 579999999999999999888776653221 12345567653
No 499
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=26.92 E-value=3.6e+02 Score=22.24 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=11.4
Q ss_pred CCCChHHHHHHHHHHHcCCceE
Q 022573 15 TGAGQHGVATAAACAKLALDCT 36 (295)
Q Consensus 15 ~ssGN~g~a~A~~a~~~G~~~~ 36 (295)
.|+|==..-+++.+.+.|.+++
T Consensus 6 ~SGGkDS~~al~~a~~~G~~v~ 27 (194)
T cd01994 6 ISGGKDSCYALYRALEEGHEVV 27 (194)
T ss_pred ecCCHHHHHHHHHHHHcCCEEE
Confidence 4555544455555555565433
No 500
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=26.87 E-value=1.3e+02 Score=23.95 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=20.1
Q ss_pred cEEEEeCCCC--hHHHHHHHHHHHcCCceEEEeeC
Q 022573 9 KSIVAATGAG--QHGVATAAACAKLALDCTVFMGT 41 (295)
Q Consensus 9 ~~~V~~~ssG--N~g~a~A~~a~~~G~~~~vv~p~ 41 (295)
+..|+.+|.. .++.-.+...+.+|+++.+-+-.
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~s 36 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVAS 36 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 3455555443 37777888888888887776643
Done!