RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 022573
(295 letters)
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain.
Length = 410
Score = 568 bits (1466), Expect = 0.0
Identities = 208/295 (70%), Positives = 251/295 (85%), Gaps = 3/295 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKR+G+K I+A TGAGQHGVATA CA+ L+C V+MG DME+Q+ V M+LLGA+
Sbjct: 112 LLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAE 171
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V+ V K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVR+F S+IGKETR+Q
Sbjct: 172 VRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQ 231
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
AMEKWGGKPDVL+ACVG GSNA+GLFHEFI+DEDVRLIGVEAAGFGLDSGKHAATL KGE
Sbjct: 232 AMEKWGGKPDVLVACVGGGSNAMGLFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGE 291
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VGV HGAMSYLLQDE+GQI+ HS+ GL+YPGVGPE SFL+DTGRAE+Y+ TD+EA++A
Sbjct: 292 VGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEA 351
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR 292
+QRL RLEGI PALE SHALA+LEKLCPTLP+G KVVVNCSG GDKDV+T + Y
Sbjct: 352 FQRLSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVVNCSGRGDKDVNTAIKYL 406
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.
Length = 397
Score = 496 bits (1280), Expect = e-178
Identities = 178/294 (60%), Positives = 224/294 (76%), Gaps = 3/294 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+K I+A TGAGQHGVATA A A L L+C ++MG D+E+Q+ V MKLLGA+
Sbjct: 99 LLAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAE 158
Query: 61 VKAVD---GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+WV N+E ++YL G+V GPHP P MVR+FQS+IG+E + Q
Sbjct: 159 VVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQ 218
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
+EK G PD ++ACVG GSNA+G+FH FI+DE VRLIGVEAAG GL++GKHAATL KG
Sbjct: 219 ILEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVEAAGKGLETGKHAATLTKGR 278
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
GV HGA +YLLQDE+GQIL THS+ GL+YPGVGPE ++L+D GRAE+ + TD EA++A
Sbjct: 279 PGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEA 338
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291
+Q L RLEGI PALE+SHALA+ KL PTL +VVN SG GDKDV TV
Sbjct: 339 FQLLSRLEGIIPALESSHALAYALKLAPTLGKDQIIVVNLSGRGDKDVFTVAKL 392
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 477 bits (1230), Expect = e-170
Identities = 170/294 (57%), Positives = 221/294 (75%), Gaps = 3/294 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGVATA A A L+C ++MG D+E+Q+ V M+LLGA+
Sbjct: 96 LLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAE 155
Query: 61 VKAVD---GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V G K+A +EA+R+WV N+E ++YL G+ GPHP P +VR+FQS+IG+E + Q
Sbjct: 156 VVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQ 215
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
+EK G PD ++ACVG GSNA+G+FH FI+DE VRLIGVEAAG G+++GKHAATL G
Sbjct: 216 ILEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGR 275
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
GV HG +YLLQDE+GQIL +HS+ GL+YPGVGPE ++L+D GRAE+ + TD+EA++A
Sbjct: 276 PGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEA 335
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291
+Q L RLEGI PALE+SHALA+ KL P LP +VVN SG GDKDV TV
Sbjct: 336 FQLLSRLEGIIPALESSHALAYALKLAPKLPKDEIIVVNLSGRGDKDVFTVAKL 389
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 428 bits (1103), Expect = e-152
Identities = 167/289 (57%), Positives = 214/289 (74%), Gaps = 3/289 (1%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
AKRMG+K ++A TGAGQHGVATA ACA L+C ++MG D+E+Q V M+LLGA+V
Sbjct: 77 AKRMGKKRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVV 136
Query: 63 AV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAM 119
V G K+A SEAIR+WV N+E ++YL G+VVGPHP P MVR+FQS+IG+E +KQ +
Sbjct: 137 PVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQIL 196
Query: 120 EKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVG 179
EK G PDV++ACVG GSNA GLF+ FIND+DV+LIGVEA G GL++G HAA L G G
Sbjct: 197 EKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVEAGGCGLETGGHAAYLFGGTAG 256
Query: 180 VYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQ 239
V HG Y LQDE+GQI+ HS+ GL+YPGVGPE ++L+D+GR E+ TD+EA++A++
Sbjct: 257 VLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFK 316
Query: 240 RLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 288
L R EGI PALE+SHA+A+ KL L +VVN SG GDKD+ TV
Sbjct: 317 LLARTEGIIPALESSHAIAYAIKLAKKLGKEKVIVVNLSGRGDKDLQTV 365
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 423 bits (1091), Expect = e-149
Identities = 157/293 (53%), Positives = 207/293 (70%), Gaps = 3/293 (1%)
Query: 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 61
+AKRMG+K ++A TGAGQHGVATA A A L+C ++MG D+E+Q V MKLLGA+V
Sbjct: 104 LAKRMGKKRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEV 163
Query: 62 KAVD---GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQA 118
V KEA A +++ + + ++Y G+VVGPHP P+MVR+FQS+IG+E R+Q
Sbjct: 164 VPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQF 223
Query: 119 MEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEV 178
+E G PD ++ACVG GSNA+GLF F++DE VRL+GVE AG GLD G+HAATL G+
Sbjct: 224 LEMTGRLPDAVVACVGGGSNAIGLFSAFLDDESVRLVGVEPAGRGLDLGEHAATLTLGKP 283
Query: 179 GVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAY 238
GV HG SY+LQDE+G+ HS+ GL+YPGVGPE ++L+D GR E+ TATD+EA+ A+
Sbjct: 284 GVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAF 343
Query: 239 QRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291
L R EGI PALE+SHA+A+ KL P L ++VN SG GDKD+D V
Sbjct: 344 FLLSRTEGIIPALESSHAVAYAIKLAPELSKDETILVNLSGRGDKDIDYVAEM 396
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit. Tryptophan
synthase catalyzes the last step in the biosynthesis of
tryptophan. the beta chain contains the functional
domain for or the synthesis of tryptophan from indole
and serine. The enzyme requires pyridoxal-phosphate as a
cofactor. The pyridoxal-P attachment site is contained
within the conserved region
[LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P
attachment site] which is present between residues
90-100 of the model [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 385
Score = 416 bits (1072), Expect = e-147
Identities = 170/294 (57%), Positives = 221/294 (75%), Gaps = 3/294 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+K I+A TGAGQHGVATA A A L LDC V+MG D+E+Q V M+LLGA+
Sbjct: 91 LLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAK 150
Query: 61 VKAVD---GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V G K+A +EA+R+WV +++ ++Y+ G+ VGPHP P MVR+FQS+IG+E ++Q
Sbjct: 151 VIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQ 210
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
+E+ G PD ++ACVG GSNA+G+F+ FI+D V+LIGVEA G G+D+ KHAATLAKG
Sbjct: 211 ILEQEGRLPDAVIACVGGGSNAIGIFYAFIDDPSVQLIGVEAGGLGIDTDKHAATLAKGS 270
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
GV HG +YLLQDE+GQIL HSV GL+YPGVGPE ++L +TGRA + TD EA++A
Sbjct: 271 PGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEA 330
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291
++ L R EGI PALE+SHALA LEK+ PTLP VVVN SG GDKD+ T+ Y
Sbjct: 331 FKLLSRNEGIIPALESSHALAHLEKIAPTLPKDQIVVVNLSGRGDKDIFTIAKY 384
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 384 bits (987), Expect = e-131
Identities = 155/294 (52%), Positives = 212/294 (72%), Gaps = 3/294 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGVATA ACA L CT+FMG D+++Q+ V MKLLGA
Sbjct: 311 LLAKRMGKTRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGAN 370
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EAIR+WV ++ ++YL G+ VGPHP P MV FQS+IG+E ++Q
Sbjct: 371 VIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQ 430
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
E+ G PD ++ACVG GSNA+G+F+ F++D V+LIGVEA G G+++G+HAAT+ KG
Sbjct: 431 LKEQTGKLPDAIIACVGGGSNAIGIFYHFLDDPSVKLIGVEAGGKGVNTGEHAATIKKGR 490
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
GV HG+M+YL+QDE GQIL HS+ GL+YPG+GP + L +TGRA + + TD+EA+ A
Sbjct: 491 KGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDA 550
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291
++ L +LEGI PALE+SHALA+L++ V+VN SG GDKD+ T+ Y
Sbjct: 551 FKLLAKLEGIIPALESSHALAYLKEGRKKFKKKDIVIVNLSGRGDKDIPTLKEY 604
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate
synthase/tryptophan synthase subunit beta; Provisional.
Length = 695
Score = 286 bits (732), Expect = 8e-92
Identities = 146/298 (48%), Positives = 201/298 (67%), Gaps = 12/298 (4%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
++ KRMG+ ++A TGAGQHGVATA CA L L C ++MG D +Q+ V M++LGA+
Sbjct: 372 LLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAE 431
Query: 61 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V D K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQ IIG+E KQ
Sbjct: 432 VVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEA-KQ 490
Query: 118 AMEKWGG--KPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLA- 174
++ W G PD + ACVG GSNA+G+ + F++DE V L G EA G G +SGKHA A
Sbjct: 491 QLQDWYGIDHPDAICACVGGGSNAIGVMNAFLDDERVNLYGYEAGGNGPESGKHAIRFAP 550
Query: 175 -KGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQE 233
GE+G++ GA SYLL+++EGQ L T+S+ GL+Y VGPE ++L+D GR + ATD+E
Sbjct: 551 GTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEE 610
Query: 234 AVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLP----NGAKVVVNCSGGGDKDVDT 287
A+ A++ LC EGI PA+E+SHA+A K L ++VN SG GDKD++T
Sbjct: 611 AMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNT 668
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like
enzyme. This model represents a family of
pyridoxal-phosphate dependent enzyme (pfam00291) closely
related to the beta subunit of tryptophan synthase
(TIGR00263). However, the only case in which a member of
this family replaces a member of TIGR00263 is in
Sulfolobus species which contain two sequences which hit
this model, one of which is proximal to the alpha
subunit. In every other case so far, either the species
appears not to make tryptophan (there is no trp synthase
alpha subunit), or a trp synthase beta subunit matching
TIGR00263 is also found [Unknown function, Enzymes of
unknown specificity].
Length = 419
Score = 127 bits (322), Expect = 4e-34
Identities = 100/320 (31%), Positives = 137/320 (42%), Gaps = 47/320 (14%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
AK G K +V TGAGQ G A + A A L+C VFM ++ + LM+L GA+V
Sbjct: 112 AKIEGAKRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVI 171
Query: 63 AVDGCFKE------------------ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVR 104
F E A SEAI + + E + Y G+V+ V
Sbjct: 172 PSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSVLN------HVL 224
Query: 105 EFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE-----DVRLIGVEA 159
Q++IG E +KQ ME+ G PDV++ CVG GSN GL F+ D+ D R I E
Sbjct: 225 LHQTVIGLEAKKQ-MEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEP 283
Query: 160 AGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV-----GVGLEYPGVGPE 214
K TL +GE G + L + LG + GL Y GV P
Sbjct: 284 --------KACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPT 335
Query: 215 ISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-- 272
+S L + G E +EA +A + EGI PA E++HA+A +
Sbjct: 336 LSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEK 395
Query: 273 -VVVNCSGGGDKDVDTVVNY 291
++ N SG G D+ Y
Sbjct: 396 VILFNLSGHGLLDLKAYAKY 415
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase
beta-subunit (paralog of TrpB) [General function
prediction only].
Length = 432
Score = 127 bits (321), Expect = 8e-34
Identities = 98/325 (30%), Positives = 135/325 (41%), Gaps = 57/325 (17%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
AK+ G K + TGAGQ G A + A A L TVFM ++ + LM+L GA+V
Sbjct: 122 AKKEGAKRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVV 181
Query: 63 AVDGCFKE------------------ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVR 104
E A SEAI + N E + Y G+V+ V
Sbjct: 182 PSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKN-ENTKYSLGSVLN------HVL 234
Query: 105 EFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE-----DVRLIGVEA 159
Q++IG E +KQ +E+ G PDV++ CVG GSN GL + FI D+ + R I VE
Sbjct: 235 LHQTVIGLEAKKQ-LEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEP 293
Query: 160 AGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVG----------VGLEYP 209
K L KGE G + L +L +++G GL Y
Sbjct: 294 --------KACPKLTKGEYRYDFGDTAGLT-----PLLKMYTLGHDYVPPPIHAGGLRYH 340
Query: 210 GVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPN 269
GV P +S L G E +E +A R EGI PA E++HA+
Sbjct: 341 GVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKARE 400
Query: 270 GAK---VVVNCSGGGDKDVDTVVNY 291
+ ++ N SG G D+ Y
Sbjct: 401 EGEEKVILFNLSGHGLLDLSAYDKY 425
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed.
Length = 427
Score = 125 bits (317), Expect = 3e-33
Identities = 100/316 (31%), Positives = 133/316 (42%), Gaps = 59/316 (18%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
K+ G K + TGAGQ G A A ACA L+CTVFM E++ + LM+ GA+V
Sbjct: 121 NKKEGIKRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVI 180
Query: 63 AVDGCFKEAS------------------SEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVR 104
EA SEA+ + + Y G+V+ H V
Sbjct: 181 PSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKR-PDTKYALGSVL-NH-----VL 233
Query: 105 EFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE-----DVRLIGVEA 159
Q++IG E +KQ +E G PDV++ CVG GSN GL F+ D+ D R I VE
Sbjct: 234 LHQTVIGLEAKKQ-LELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEP 292
Query: 160 AGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV----------GLEYP 209
A TL KGE G + L +L +++G GL Y
Sbjct: 293 AA--------CPTLTKGEYAYDFGDTAGLT-----PLLKMYTLGHDFVPPPIHAGGLRYH 339
Query: 210 GVGPEISFLRDTGRAEFYTATDQEAV-QAYQRLCRLEGIFPALEASHALAF---LEKLCP 265
G+ P +S L G E A Q V +A R EGI PA E+SHA+A
Sbjct: 340 GMAPLVSLLVHEGLIE-ARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAK 398
Query: 266 TLPNGAKVVVNCSGGG 281
++ N SG G
Sbjct: 399 EEGEEKVILFNLSGHG 414
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 111 bits (281), Expect = 2e-29
Identities = 58/208 (27%), Positives = 83/208 (39%), Gaps = 32/208 (15%)
Query: 3 AKRMGRKS---IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGA 59
A+ G+ I+ +TG G G+A AAA A+L L CT+ M + KV M+ LGA
Sbjct: 42 AEEEGKLPKGVIIESTG-GNTGIALAAAAARLGLKCTIVMP-EGASPE--KVAQMRALGA 97
Query: 60 QVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAM 119
+V V G F +A + A +YY+ Q IG E +Q
Sbjct: 98 EVVLVPGDFDDAIALAKELAE-EDPGAYYVNQFD------NPANIAGQGTIGLEILEQL- 149
Query: 120 EKWGGKPDVLLACVGSGSNALGLFHEFIND-EDVRLIGVEAAGFGLDSGKHAATLAKGEV 178
G KPD ++ VG G N G+ +V++IGVE + + L
Sbjct: 150 --GGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP---EVVTVSDEEAL----- 199
Query: 179 GVYHGAMSYLLQDEEGQILGTHSVGVGL 206
LL EEG ++ S L
Sbjct: 200 -----EAIRLLAREEGILVEPSS-AAAL 221
Score = 58.3 bits (142), Expect = 4e-10
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 224 AEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGG 280
E T +D+EA++A + L R EGI ++ ALA KL L G VVV +GG
Sbjct: 188 PEVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG 244
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 104 bits (260), Expect = 4e-26
Identities = 73/277 (26%), Positives = 109/277 (39%), Gaps = 30/277 (10%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
++ + + R + V +G G A AAA A+L L T+ + K+LLM+ LGA+
Sbjct: 43 LLLRALERGATVVEASSGNTGRALAAAAARLGLKVTIVVP-EGASPG--KLLLMRALGAE 99
Query: 61 VKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAME 120
V V + +A+ E G + V IG E +Q +
Sbjct: 100 VILVVS--EGDYDDALELAEEAAELLAAYDGPIPLGQYNNPNVIAGYKTIGLEILEQLGQ 157
Query: 121 KWGGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDSGKHAATLAKGEVG 179
G PD ++ VG G A G+ +R+IGVE G A LA+
Sbjct: 158 ---GDPDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEPEG--------APALARS--- 203
Query: 180 VYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQ 239
L+ T G+G P G L D + Y +D+EA++A +
Sbjct: 204 ---------LEAGRRVPKPTTIAGLGPGIPLDGELALELIDEYVGDVYAVSDEEALEAIR 254
Query: 240 RLCRLEGIFPALEASHALAFLEKLC-PTLPNGAKVVV 275
L R EGI ++ ALA +L L G +VVV
Sbjct: 255 LLARREGILVEPSSAAALAAALRLAELELGKGKRVVV 291
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 63.0 bits (154), Expect = 2e-11
Identities = 77/302 (25%), Positives = 123/302 (40%), Gaps = 62/302 (20%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
AK +G K++ A+ G + AA A+ + C VF+ A K+ GA V
Sbjct: 65 AKELGVKAVACAS-TGNTSASLAAYAARAGIKCVVFLP-AGKALG--KLAQALAYGATVL 120
Query: 63 AVDG----CFKEASSEAIRNW--VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRK 116
AV+G + A NW + N Y L G Q I E +
Sbjct: 121 AVEGNFDDALRLVRELAEENWIYLSNSLNPYRLEG---------------QKTIAFEIAE 165
Query: 117 QAMEKWGGKPDVLLACVGSGSNALGL---FHEFIN----DEDVRLIGVEAAGFGLDSGKH 169
Q + PD ++ VG+G N + F E D R++GV+A G
Sbjct: 166 QLGWEV---PDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEG-------- 214
Query: 170 AATLAKG-EVGVYHGAMSYLLQDEEGQILGTHSVGVGLE--YPGVGPEI-SFLRDT-GRA 224
AA + + + G +D+ + ++ + P GP+ +R++ G A
Sbjct: 215 AAPIVRAFKEG----------KDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTA 264
Query: 225 EFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCP--TLPNGAKVVVNCSGGGD 282
+D+E ++A + L R EGIF ++ +LA L+KL + G +VVV +G G
Sbjct: 265 V--AVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGL 322
Query: 283 KD 284
KD
Sbjct: 323 KD 324
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 59.5 bits (145), Expect = 3e-10
Identities = 70/293 (23%), Positives = 103/293 (35%), Gaps = 86/293 (29%)
Query: 11 IVAATGAGQHGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGAQVKAVD---G 66
IV AT +G G+A A A + M T E++ L++ LGA+V G
Sbjct: 65 IVEAT-SGNTGIALAMVAAAKGYRLIIVMPETMSQERRK----LLRALGAEVILTPGAPG 119
Query: 67 CFKEASSEA------IRNWV---------GNLEKSYYLTGTVVGPHPCPIMVREFQSIIG 111
K A A I + N E Y TG P + ++
Sbjct: 120 NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTG--------PEIWQQT----- 166
Query: 112 KETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEF-INDEDVRLIGVEAAGFGLDSGKHA 170
GK D +A VG+G G+ + +VR++ V+ G L SG
Sbjct: 167 -----------DGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSG--- 212
Query: 171 ATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLR--DTGRAEFYT 228
G + ++ G+G G PE L D E
Sbjct: 213 ------------GEGPHKIE------------GIG---AGFVPENLDLDLID----EVIR 241
Query: 229 ATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVV-VNCSGG 280
+D+EA+ +RL R EG+ + + ALA KL LP G +V + G
Sbjct: 242 VSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELPAGKTIVTILPDSG 294
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 57.7 bits (140), Expect = 2e-09
Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 55/300 (18%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
AK +G K+I+ A+ +G G + AA A+ L V + K+ M LGA V
Sbjct: 121 AKELGAKTILCAS-SGNTGASAAAYAARAGLKVFVLYPKGKVSPG--KLAQMLTLGAHVI 177
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 122
AVDG F +A N E ++ +P + E Q E +Q K
Sbjct: 178 AVDGNFDDAQELVKE--AANREGLLSAVNSI---NPYRL---EGQKTYAFEIAEQLGWKA 229
Query: 123 GGKPDVLLACVGSGSNALGL---FHEFINDEDV----RLIGVEAAGFG------LDSGKH 169
PD ++ VG+G N L + F E + + + GV+A GF + +
Sbjct: 230 ---PDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRET 286
Query: 170 AATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTA 229
T+A AM +G + + LR++G
Sbjct: 287 PETIAP--------AM---------------DIGNPSNWERA---LFALRESG-GLAVAV 319
Query: 230 TDQEAVQAYQRLCRLEGIFPALEASHALAFLEKL-CPTLPNGAKVVVNCSGGGDKDVDTV 288
+D+E ++A + L EGI ++ A+A L KL + VV+ +G G K DTV
Sbjct: 320 SDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDTV 379
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 56.8 bits (138), Expect = 2e-09
Identities = 61/285 (21%), Positives = 97/285 (34%), Gaps = 58/285 (20%)
Query: 11 IVAATGAGQHGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGAQVKAVDGCFK 69
I+ T +G G+ A A + M T EK+ L++ LGA+V
Sbjct: 56 IIEPT-SGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRK----LLRALGAEVILTPEAEA 110
Query: 70 EASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE-----TRKQAMEKWGG 124
+ AI L P + +F++ E T + E+ G
Sbjct: 111 DGMKGAIAK-ARELAAE----------TPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159
Query: 125 KPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHG 183
K D +A VG+G G+ + +VR++GV+ G L SG
Sbjct: 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPP------------- 206
Query: 184 AMSYLLQDEEGQILGTHSVGVGLEYPGVGPEI--SFLRDTGRAEFYTATDQEAVQAYQRL 241
G H + G+G L + E +D+EA +RL
Sbjct: 207 --------------GPHKI------EGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRL 246
Query: 242 CRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 286
R EG+ + A+A KL L G +V G++ +
Sbjct: 247 AREEGLLVGGSSGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS 291
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 50.2 bits (121), Expect = 3e-07
Identities = 70/280 (25%), Positives = 106/280 (37%), Gaps = 50/280 (17%)
Query: 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFM--GTADMEKQSSKVLLMKLLGAQVKAVD 65
K +VAA+ AG H A A L + T+ M ++KV + GA+V
Sbjct: 65 AKGVVAAS-AGNHAQGVAYAAKLLGIPATIVMPETAP-----AAKVDATRAYGAEVVLYG 118
Query: 66 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK 125
F EA ++A L + T + P P ++ Q IG E +Q
Sbjct: 119 EDFDEAEAKARE-----LAEEE--GLTFIHPFDDPDVI-AGQGTIGLEILEQV-----PD 165
Query: 126 PDVLLACVGSGSNALG--LFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHG 183
D + VG G G + ++ + ++IGVE G + + LA G+ V
Sbjct: 166 LDAVFVPVGGGGLIAGIATAVKALSP-NTKVIGVEPEGA--PAMAQS--LAAGKP-VTL- 218
Query: 184 AMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISF-LRDTGRAEFYTATDQEAVQAYQRLC 242
E I G+ ++ PG E++F + + T ++ E A L
Sbjct: 219 -------PEVDTIAD----GLAVKRPG---ELTFEIIRKLVDDVVTVSEDEIAAAMLLLF 264
Query: 243 RLEGIFPALEASHALAF--LEKLCPTLPNGAKVVVNCSGG 280
E + E + ALA L L G KVVV SGG
Sbjct: 265 EREKL--VAEPAGALALAALLSGKLDLK-GKKVVVVLSGG 301
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 48.0 bits (115), Expect = 3e-06
Identities = 69/285 (24%), Positives = 104/285 (36%), Gaps = 57/285 (20%)
Query: 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFM--GTADMEKQSSKVLLMKLLGAQVKAVD 65
++AA+ AG H A A +L + T+ M T + KV + GA+V
Sbjct: 74 AAGVIAAS-AGNHAQGVAYAAKRLGIKATIVMPETTPKI-----KVDATRGYGAEVILHG 127
Query: 66 GCFKEASSEAIRNWVGNLEKSYYLTG-TVVGP--HPCPIMVREFQSIIGKETRKQAMEKW 122
F +A + A L + G T V P P V Q I E +E+
Sbjct: 128 DNFDDAYAAAEE-----LAEE---EGLTFVPPFDDP---DVIAGQGTIALE----ILEQL 172
Query: 123 GGKPDVLLACVGSG---SNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVG 179
PD + VG G S ++++IGVE G S + L G++
Sbjct: 173 PDLPDAVFVPVGGGGLISGIATALKAL--SPEIKVIGVEPEGA--PSMYAS--LKAGKIV 226
Query: 180 VYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISF--LRDTGRAEFYTATDQEAVQA 237
V + GT + G+ ++ PG +++F LR+ + + E A
Sbjct: 227 VVLPDV------------GTIADGLAVKRPG---DLTFEILRELV-DDIVLVDEDEICAA 270
Query: 238 YQRLCRLEGIFPALEASHALAF--LEKLCPTLPNGAKVVVNCSGG 280
+ L I E + ALA L G VVV SGG
Sbjct: 271 MRDLFERTKII--AEPAGALALAALLAGKIEPLQGKTVVVILSGG 313
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 46.2 bits (109), Expect = 1e-05
Identities = 72/296 (24%), Positives = 114/296 (38%), Gaps = 47/296 (15%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
AK G ++I+ A+ G + AA A+L + C + + + K+ GA++
Sbjct: 70 AKEEGSEAIICAS-TGNTSASAAAYAARLGMKCIIVIPEGKIAH--GKLAQAVAYGAEII 126
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 122
+++G F +A +A+RN E+ L +V +P I E Q E Q
Sbjct: 127 SIEGNFDDAL-KAVRNIAA--EEPITLVNSV---NPYRI---EGQKTAAFEICDQLQRA- 176
Query: 123 GGKPDVLLACVGSGSNALGLFHEFINDED------VRLIGVEAAGFGLDSGKHAATLAKG 176
PDVL VG+ N + F E R+ G EA G AA + KG
Sbjct: 177 ---PDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEG--------AAAIVKG 225
Query: 177 EVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQ 236
V + + E T + + + P + E +D+E +
Sbjct: 226 HV----------IDEPE-----TIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILH 270
Query: 237 AYQRLCRLEGIF--PALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 290
AY+ L + EG+F P AS A + G VV +G G KD D ++
Sbjct: 271 AYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAIS 326
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino
acid transport and metabolism].
Length = 323
Score = 45.4 bits (108), Expect = 1e-05
Identities = 57/254 (22%), Positives = 87/254 (34%), Gaps = 45/254 (17%)
Query: 3 AKRMGRKSIVAATGAGQ--HGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGA 59
A R G ++V G Q H TAA AKL L C + + + +LL KL+GA
Sbjct: 59 ALRKGADTLVTY-GGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGA 117
Query: 60 QVKAVDGCFKEASSEAIRNWVGNLE----KSYYLTGTVVGPHPCPIMVREFQSIIGKETR 115
+V+AVD + + + K Y + P VR I + +
Sbjct: 118 EVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQ 177
Query: 116 KQAMEKWGGKPDVLLACVGSGSNALGLFHEF-INDEDVRLIGVEAAGFGLDSGKHAATLA 174
K D ++ GSG GL DV +IG++ + + LA
Sbjct: 178 LL-------KFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLA 230
Query: 175 KGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTG-RAEFYTATDQE 233
+ + G+G E L Y ++E
Sbjct: 231 QATAELL----------------------------GLGSEADVLLSDDYHHPGYGKPNEE 262
Query: 234 AVQAYQRLCRLEGI 247
++A + L RLEGI
Sbjct: 263 DIEAIKLLARLEGI 276
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein
SbnA. Members of this family include SbnA, a protein of
the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of certain
siderophores and other secondary metabolites. SbnA is a
pyridoxal phosphate-dependent enzyme [Cellular
processes, Biosynthesis of natural products].
Length = 304
Score = 44.1 bits (105), Expect = 4e-05
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 209 PGVG----PEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLC 264
PG+G PE+ L ++ + + + V +RL R EGI + +A +++L
Sbjct: 217 PGLGASVVPEL--LDESLIDDVVHVPEYDTVAGCRRLARREGILAGGSSGTVVAAIKRLL 274
Query: 265 PTLPNGAKVVVNCSGGGDKDVDTVVN 290
P +P G+ VV G++ +DTV N
Sbjct: 275 PRIPPGSTVVAILPDRGERYLDTVYN 300
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD):
Pyridoxal phosphate (PLP)-dependent enzyme which
catalyzes the conversion of
1-aminocyclopropane-L-carboxylate (ACC), a precursor of
the plant hormone ethylene, to alpha-ketobutyrate and
ammonia.
Length = 307
Score = 43.2 bits (102), Expect = 7e-05
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 23/160 (14%)
Query: 20 HGVATAAACAKLALDCTVFM-----GTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSE 74
H AA AKL L C + + + + +LL +++GA V+ V F +
Sbjct: 65 HTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRK 124
Query: 75 AIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIG--------KETRKQAMEKWGGKP 126
+ +E G P I + +G E +Q E+ G K
Sbjct: 125 SFEEAAEEVEAK--------GGKPYVIPAGGSEHPLGGLGYVGFVLEIAQQE-EELGFKF 175
Query: 127 DVLLACVGSGSNALGLFHEFIND-EDVRLIGVEAAGFGLD 165
D ++ C +GS GL R+IG++A+
Sbjct: 176 DSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEK 215
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 42.9 bits (102), Expect = 1e-04
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 15 TGAGQ--HGVATAAACAKLALDCTVFM-----GTADMEKQSSKVLLMKLLGAQVKAVDG 66
GA Q H TAAA AKL L C + + A+ + VLL L GA++ V
Sbjct: 70 AGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPA 128
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the model
[Amino acid biosynthesis, Aspartate family].
Length = 328
Score = 42.0 bits (99), Expect = 2e-04
Identities = 70/305 (22%), Positives = 110/305 (36%), Gaps = 63/305 (20%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
A +G +++ A+ G G A AA K + + + K+ A+V
Sbjct: 66 ALELGNDTVLCAS-TGNTGAAAAAYAGKAGVKVVILYPAGKISLG--KLAQALGYNAEVV 122
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTG-TVVGPHPCPIMVREFQSIIGKETRKQAMEK 121
A+DG F +A + V L G V P + E Q E A+E+
Sbjct: 123 AIDGNFDDA-----QRLVKQLFGDKEALGLNSVNSIPYRL---EGQKTYAFE----AVEQ 170
Query: 122 WGGK-PDVLLACVGSGSN---ALGLFHEFI---NDEDVRLIGVEAAGFG------LDSGK 168
G + PD ++ V + N L F E D G++A G L+SG+
Sbjct: 171 LGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQ 230
Query: 169 -----HAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGR 223
ATL+ ++ +G F R G
Sbjct: 231 WEPIEDPATLS-------------------------TAIDIGNPANWERALELFRRSNGN 265
Query: 224 AEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCP--TLPNGAKVVVNCSGGG 281
AE +D+E ++A + L R EG F ++ ++A L KL T +VV +G G
Sbjct: 266 AE--DVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNG 323
Query: 282 DKDVD 286
KD +
Sbjct: 324 LKDPE 328
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 40.2 bits (95), Expect = 8e-04
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 229 ATDQEAVQAYQRLCRLEGIF--PALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKD 284
TD+E ++AY+ L R EG+F PA AS +A L K +P G+ VV +G G KD
Sbjct: 267 VTDEEILEAYRLLARKEGVFCEPASAAS--VAGLLKAIRAGKIPEGSTVVCTLTGNGLKD 324
Query: 285 VDTVVN 290
DT +
Sbjct: 325 PDTAIK 330
>gnl|CDD|236065 PRK07591, PRK07591, threonine synthase; Validated.
Length = 421
Score = 38.4 bits (90), Expect = 0.003
Identities = 75/298 (25%), Positives = 114/298 (38%), Gaps = 77/298 (25%)
Query: 23 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 82
+ AA A+ LD VF+ AD+E K++ + G + AVD GN
Sbjct: 151 SVAAHAARAGLDSCVFI-PADLEAG--KIVGTLVYGPTLVAVD---------------GN 192
Query: 83 LEKSYYLTGTVVGPHP----CPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGS 137
+ L + H I +R + + K + E+ G + PD ++A + SGS
Sbjct: 193 YDDVNRLCSELANEHEGWGFVNINLRPYYAEGSKTLGYEVAEQLGWRLPDQVVAPLASGS 252
Query: 138 NALGL---FHEFIN-----DEDVRLIGVEAAGF---------GLDSGK--HAATLAKGEV 178
+ F E I D+ VR+ G +A G G D K T+AK
Sbjct: 253 LLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAK--- 309
Query: 179 GVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGP---EISFLRDTGRAEFYTATDQEAV 235
S+ +G P GP +I+ R TG A TD+E +
Sbjct: 310 ----------------------SLAIG--NPADGPYALDIA--RRTGGA-IEDVTDEEII 342
Query: 236 QAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDKDVDTVVNY 291
+ + L R EGIF +A L+KL + + VV +G G K ++ V Y
Sbjct: 343 EGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEAVAGY 400
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 37.0 bits (86), Expect = 0.008
Identities = 61/279 (21%), Positives = 105/279 (37%), Gaps = 65/279 (23%)
Query: 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV------K 62
K+IV T +G G+A A A + M M + K L+K GA++ +
Sbjct: 58 KTIVEPT-SGNTGIALAMVAAARGYKLILTM-PETMSIERRK--LLKAYGAELVLTPGAE 113
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ--AME 120
+ G +A A + Y M+++F++ E ++ E
Sbjct: 114 GMKGAIAKAEEIAAST------PNSYF------------MLQQFENPANPEIHRKTTGPE 155
Query: 121 KW---GGKPDVLLACVGSGSNALGLFHEF-INDEDVRLIGVEAAGFGLDSGKHAATLAKG 176
W GK D +A VG+G G+ +++++ VE A + L+ G
Sbjct: 156 IWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAE--------SPVLSGG 207
Query: 177 EVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQ 236
+ G + +Q G+G G P+ L + E T +D+EA++
Sbjct: 208 KPG------PHKIQ------------GIG---AGFIPKN--LNRSVIDEVITVSDEEAIE 244
Query: 237 AYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVV 275
+RL EGI + + A+A KL +VV
Sbjct: 245 TARRLAAEEGILVGISSGAAVAAALKLAKRPEPDKLIVV 283
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 37.1 bits (86), Expect = 0.009
Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 40/162 (24%)
Query: 11 IVAATGAGQHGVATAAACAKLALDCTVFMGT-ADMEKQSSKVLLMKLLGAQV----KAVD 65
IVA+ G + AA A+ + V + D K ++ M GA++ ++VD
Sbjct: 116 IVASDG--NAAASVAAYSARAGKEAFVVVPRKVDKGK----LIQMIAFGAKIIRYGESVD 169
Query: 66 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ-AMEKWGG 124
+ A A L Y +T +IIG E +K A E W
Sbjct: 170 EAIEYAEELA------RLNGLYNVTPE--------------YNIIGLEGQKTIAFELWEE 209
Query: 125 -KPDVLLACVGSGSNALGLFHEF-------INDEDVRLIGVE 158
P ++ GSGS ++ F + +E +LI V+
Sbjct: 210 INPTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQ 251
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional.
Length = 310
Score = 36.9 bits (86), Expect = 0.009
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 11 IVAATGAGQHGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGAQVKAVDGCFK 69
+VAA+G G G+A A A A L + TVF+ TA +KV ++ LGA+V V +
Sbjct: 71 VVAASG-GNAGLAVAYAAAALGVPATVFVPETA----PPAKVARLRALGAEVVVVGAEYA 125
Query: 70 EASSEAIR 77
+A A
Sbjct: 126 DALEAAQA 133
>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate
(PLP)-dependent enzyme which catalyzes the conversion of
L- , D-serine, or L-threonine to pyruvate/ketobutyrate
and ammonia.
Length = 316
Score = 36.1 bits (84), Expect = 0.015
Identities = 65/295 (22%), Positives = 105/295 (35%), Gaps = 52/295 (17%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
+ + V + G G+A A A KL + CT+ + + + K ++ GA
Sbjct: 43 SAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEK---LRDEGAT 99
Query: 61 VKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAME 120
V + EA + N Y V P P++ S++ E +Q
Sbjct: 100 VVVHGKVWWEADNYLREELAENDPGPVY-----VHPFDDPLIWEGHSSMV-DEIAQQLQS 153
Query: 121 KWGGKPDVLLACVGSGSNALGLFH--EFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEV 178
+ K D ++ VG G G+ E D+ ++ VE G S +A+ A G+
Sbjct: 154 Q--EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVET--EGAHS-LNASLKA-GK- 206
Query: 179 GVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQ 232
L+ + + T S+G LEY S + +D+
Sbjct: 207 ---------LVTLPKITSVAT-SLGAKTVSSQALEYAQEHNIKSEV----------VSDR 246
Query: 233 EAVQAYQRLCRLEGIF--PALEASHALAFLEKLCPTLPNGAK------VVVNCSG 279
+AVQA R E I PA A+ A+ + K+ VVV C G
Sbjct: 247 DAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGG 301
>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated.
Length = 351
Score = 35.8 bits (82), Expect = 0.018
Identities = 69/299 (23%), Positives = 115/299 (38%), Gaps = 53/299 (17%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFM--GTADMEKQSSKVLLMKLLGAQ 60
AK G ++++ A+ G A AA + L + + G + K + V+ GA
Sbjct: 70 AKEEGAEAVICAS-TGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMY----GAD 124
Query: 61 VKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRK-QAM 119
+ ++ G F EA +++R E V P+ + G++T +
Sbjct: 125 IISIQGNFDEAL-KSVRELA---ETEAVTLVNSVNPY----------RLEGQKTAAFEIC 170
Query: 120 EKWGGKPDVLLACVGSGSN------ALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATL 173
E+ G PDVL VG+ N ++E R+ G EA G AA +
Sbjct: 171 EQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEG--------AAAI 222
Query: 174 AKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQE 233
+G+ + + E T + + + P RD ++ TD E
Sbjct: 223 VQGKP----------IDNPE-----TIATAIRIGNPASWGLAEAARDESGGYIHSVTDDE 267
Query: 234 AVQAYQRLCRLEGIF--PALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 290
V AY+++ +G+F P AS A T+ G VV +G G KD DT ++
Sbjct: 268 IVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTAMS 326
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase. This model represents
threonine dehydratase, the first step in the pathway
converting threonine into isoleucine. At least two other
clades of biosynthetic threonine dehydratases have been
charcterized (TIGR01124 and TIGR01127). Those sequences
described by this model are exclusively found in species
containg the rest of the isoleucine pathway and which
are generally lacking in members of the those other two
clades of threonine dehydratases. Members of this clade
are also often gene clustered with other elements of the
isoleucine pathway [Amino acid biosynthesis, Pyruvate
family].
Length = 409
Score = 35.9 bits (83), Expect = 0.021
Identities = 46/178 (25%), Positives = 66/178 (37%), Gaps = 27/178 (15%)
Query: 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ---VKA 63
V AG H A AC L + TVFM +++ +V K+ G + +
Sbjct: 62 QLAKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRV---KIFGGEFIEIIL 118
Query: 64 VDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG 123
V F + ++ A E GT + P P ++ E Q + E Q E
Sbjct: 119 VGDTFDQCAAAA-------REHVEDHGGTFIPPFDDPRII-EGQGTVAAEILDQLPE--- 167
Query: 124 GKPDVLLACVGSGSNALGL---FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEV 178
KPD ++ VG G GL + IGVE G + A+L GEV
Sbjct: 168 -KPDYVVVPVGGGGLISGLTTYLAGTSPKTKI--IGVEPEG----APSMKASLEAGEV 218
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 35.1 bits (81), Expect = 0.034
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 25/168 (14%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
A R+G I T G +G + A L +F+ + +S+V M+ GA++
Sbjct: 58 AMRLGYSGITVGT-CGNYGASIAYFARLYGLKAVIFIPRS---YSNSRVKEMEKYGAEII 113
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLT--GTVVGPHPCPIMVREFQSIIGKETRKQAME 120
VDG ++EA + + E Y G+V ++ E S I E +
Sbjct: 114 YVDGKYEEAVERSRKF---AKENGIYDANPGSVN-----SVVDIEAYSAIAYEIYEAL-- 163
Query: 121 KWGGKPDVLLACVGSGSNALGLFHEFINDEDV-------RLIGVEAAG 161
G PD + VG+G+ G++H F D R+IGV +G
Sbjct: 164 --GDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSG 209
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 34.9 bits (81), Expect = 0.040
Identities = 59/275 (21%), Positives = 107/275 (38%), Gaps = 58/275 (21%)
Query: 9 KSIVAATGAGQHGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGAQVKAVDGC 67
+I+ AT +G G+A A A + M T +E++ L++ GA++
Sbjct: 59 DTIIEAT-SGNTGIALAMVAAAKGYKLILTMPETMSLERRK----LLRAYGAELILTPA- 112
Query: 68 FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ--AMEKW--- 122
+E AI + +M+ +F++ E + E W
Sbjct: 113 -EEGMKGAID-----------KAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160
Query: 123 GGKPDVLLACVGSGSNALGLFHEFIN--DEDVRLIGVEAAGFGLDSGKHAATLAKGEVGV 180
G+ D +A VG+G G+ ++ + +++++ VE A + V
Sbjct: 161 DGRIDHFVAGVGTGGTITGV-GRYLKEQNPNIKIVAVEPA--------------ESPVLS 205
Query: 181 YHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQR 240
+ +Q G+G G P+I L + E T +D++A++ +R
Sbjct: 206 GGEPGPHKIQ------------GIG---AGFIPKI--LDLSLIDEVITVSDEDAIETARR 248
Query: 241 LCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVV 275
L R EGI + + A+A KL L N KV+V
Sbjct: 249 LAREEGILVGISSGAAVAAALKLAKRLENADKVIV 283
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 34.2 bits (78), Expect = 0.069
Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 60/284 (21%)
Query: 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGAQVKAVD 65
G+ +++ AT G G+ A A + M T +E++ ++++ LGA+V D
Sbjct: 68 GKSTLIEATA-GNTGIGLACIGAARGYKVILVMPSTMSLERR----IILRALGAEVHLTD 122
Query: 66 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKET--RKQAMEKW- 122
S ++ G LEK ++ P + ++F++ E R E W
Sbjct: 123 ------QSIGLK---GMLEK----AEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR 169
Query: 123 --GGKPDVLLACVGSGSNALGLFHEFINDE--DVRLIGVEAAGFGLDSGKHAATLAKGEV 178
GK D+L+A VG+G A G+ +F+ ++ D+++ VE +A L+ G+
Sbjct: 170 DSAGKVDILVAGVGTGGTATGV-GKFLKEKNKDIKVCVVEPV--------ESAVLSGGQP 220
Query: 179 GVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAY 238
G +L+Q +G+ + L+ V E T +EA++
Sbjct: 221 G------PHLIQG-----IGSGIIPFNLDLTIVD------------EIIQVTGEEAIETA 257
Query: 239 QRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK--VVVNCSGG 280
+ L EG+ + + A A K+ N K VV+ SGG
Sbjct: 258 KLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGG 301
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 34.1 bits (79), Expect = 0.071
Identities = 76/304 (25%), Positives = 119/304 (39%), Gaps = 55/304 (18%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLL----- 57
A +G K++ A+ G + AA A+ L C V + + KV L KL
Sbjct: 110 ALELGVKTVACAS-TGNTSASLAAYAARAGLKCYVLL-------PAGKVALGKLAQALLH 161
Query: 58 GAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVR-EFQSIIGKETRK 116
GA+V VDG F +A + + + K Y L + P R E Q IG E
Sbjct: 162 GAKVLEVDGNFDDAL-DMVVE-LAKEGKIYLLNS--INPF------RLEGQKTIGFEIAD 211
Query: 117 QAMEKWGGKPDVLLACVGSGSNALGL---FHEFIN----DEDVRLIGVEAAGFGLDSGKH 169
Q + PD ++ VG+ N + F E + D+ ++ G++A G
Sbjct: 212 QLGWEV---PDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEG-------- 260
Query: 170 AATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTA 229
AA + + + G + + +G + P I R++G
Sbjct: 261 AAPIVEA---IKKGKDEIEPVENPETVATAIRIGNPVNAPKALRAI---RESG-GTAEAV 313
Query: 230 TDQEAVQAYQRLCRLEGIF--PALEASHALAFLEKLCP--TLPNGAKVVVNCSGGGDKDV 285
+D+E + A + L R EGI PA AS +A L KL + +VV +G KD
Sbjct: 314 SDEEILDAQKLLARKEGIGVEPASAAS--VAGLIKLVEEGVIDKDERVVCITTGHLLKDP 371
Query: 286 DTVV 289
D +
Sbjct: 372 DAAI 375
>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated.
Length = 347
Score = 34.0 bits (78), Expect = 0.076
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 34/127 (26%)
Query: 50 KVLLMKLLGAQVKAVDGCFKEASSEAIR-------NWVGNLEKSYYLTGTVVGPHPCPIM 102
K+ L+ LGA++ V+G E EA++ +V + Y+L GT
Sbjct: 142 KISLLSRLGAELHFVEGDRMEVHEEAVKFSKRNNIPYVSHWLNPYFLEGT---------- 191
Query: 103 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLF------HEFINDEDV-RLI 155
I E +Q G PD VGSG+ LG++ HE + +L+
Sbjct: 192 -----KTIAYEIYEQI-----GVPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLV 241
Query: 156 GVEAAGF 162
V+A G+
Sbjct: 242 AVQAEGY 248
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional.
Length = 317
Score = 32.7 bits (75), Expect = 0.21
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 16/129 (12%)
Query: 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67
R+ V +G HG A A + TV+ + + K+ ++ LGA+V+ G
Sbjct: 67 RQQGVITASSGNHGQGVALAAKLAGIPVTVYAPE---QASAIKLDAIRALGAEVRLYGGD 123
Query: 68 FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPD 127
A A R K Y + P+ P V Q IG E +Q D
Sbjct: 124 ALNAELAA-RRAAEQQGKVY------ISPYNDP-QVIAGQGTIGMELVEQQ-----PDLD 170
Query: 128 VLLACVGSG 136
+ VG G
Sbjct: 171 AVFVAVGGG 179
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated.
Length = 394
Score = 32.3 bits (74), Expect = 0.28
Identities = 79/305 (25%), Positives = 118/305 (38%), Gaps = 58/305 (19%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
AK +G K + T G G A AA A+ + T+FM + L L GA++
Sbjct: 122 AKELGVKHLAMPT-NGNAGAAWAAYAARAGIRATIFM---PADAPEITRLECALAGAELY 177
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRK-QAMEK 121
VDG +A E ++ T+ +E I GK+T + E+
Sbjct: 178 LVDGLISDAGKIVAE---AVAEYGWFDVSTL----------KEPYRIEGKKTMGLELAEQ 224
Query: 122 WGGK-PDVLLACVGSGSNALGL---FHE-----FINDEDVRLIGVEAAGFGLDSGKHAAT 172
G + PDV+L G G +G+ F E +I + RL+ V+A G A
Sbjct: 225 LGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEG--------CAP 276
Query: 173 LAKG-EVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYP-GVGPEISFL-----RDTGRAE 225
+ K E G H+V G+ P +G FL R+TG
Sbjct: 277 IVKAWEEGKEESEF----------WEDAHTVAFGIRVPKALG---DFLVLDAVRETGGCA 323
Query: 226 FYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPT--LPNGAKVVVNCSGGGDK 283
+D + A + L R EG+F E + A +L + L +VV+ +G G K
Sbjct: 324 I-AVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLK 382
Query: 284 DVDTV 288
DTV
Sbjct: 383 YPDTV 387
>gnl|CDD|182304 PRK10204, PRK10204, hypothetical protein; Provisional.
Length = 55
Score = 29.1 bits (65), Expect = 0.33
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 218 LRDTGRAEFYTATDQEAVQAYQRLCRLEGI---FPALEASHALAFLEKL 263
L D ++ + +Q+ + +Q RLEG+ L A ALA LE+L
Sbjct: 4 LTDKQKSRLW---EQQRNRNFQASRRLEGVEMPLVTLTAEEALARLEEL 49
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional.
Length = 322
Score = 31.9 bits (73), Expect = 0.34
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 66
R V G HG A A A L + T+ M +KV ++ LGA+V+ V
Sbjct: 65 ERARGVVTASTGNHGRALAYAARALGIRATICMSRLVPA---NKVDAIRALGAEVRIVGR 121
Query: 67 CFKEASSEAIR 77
+A +E R
Sbjct: 122 SQDDAQAEVER 132
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes,
D-cysteine desulfhydrase family. This model represents
a family of pyridoxal phosphate-dependent enzymes
closely related to (and often designated as putative
examples of) 1-aminocyclopropane-1-carboxylate
deaminase. It appears that members of this family
include both D-cysteine desulfhydrase (EC 4.4.1.15) and
1-aminocyclopropane-1-carboxylate deaminase (EC
3.5.99.7).
Length = 318
Score = 31.3 bits (71), Expect = 0.48
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 20 HGVATAAACAKLALDCTVFM-----GTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSE 74
H ATAA AKL L C + + TA+ + +LL L GA+ + E ++
Sbjct: 69 HARATAAVAAKLGLHCVLLLRNPIGTTAENYLLNGNLLLDDLFGAETRIES---CEEYTD 125
>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional.
Length = 296
Score = 31.4 bits (72), Expect = 0.50
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 230 TDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGG 280
+ QEA +RL R EGIF + + A+A ++ PN V + C G
Sbjct: 235 SQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARENPNAVIVAIICDRG 285
>gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional.
Length = 399
Score = 31.0 bits (71), Expect = 0.72
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLL--MKLLGA 59
+ +++G + AT G HG A A +L ++ M K SS+ + ++ LGA
Sbjct: 110 VREKLGDITFATAT-DGNHGRGVAWAAQQLGQKAVIY-----MPKGSSEERVDAIRALGA 163
Query: 60 QVKAVDG----CFKEASSEA-IRNWV 80
+ DG + A+ EA WV
Sbjct: 164 ECIITDGNYDDSVRLAAQEAQENGWV 189
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 30.2 bits (69), Expect = 1.1
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 11 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSS-KVLLMKLLGAQVKAVDGC 67
IV T AG G+ A A + M E QS K L++ LGA++ V
Sbjct: 67 IVEGT-AGNTGIGLALVAAARGYKTVIVMP----ETQSQEKKDLLRALGAELVLVPAA 119
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 30.2 bits (69), Expect = 1.2
Identities = 39/165 (23%), Positives = 57/165 (34%), Gaps = 34/165 (20%)
Query: 9 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ---VKAV- 64
+V A+ AG H A AC L + +FM +Q K+ ++ G + + V
Sbjct: 74 AGVVCAS-AGNHAQGVAYACRHLGIPGVIFM-PVTTPQQ--KIDQVRFFGGEFVEIVLVG 129
Query: 65 ---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGP--HPCPIMVREFQSIIGKETRKQAM 119
D A A T + P P V Q + E +Q
Sbjct: 130 DTFDDSAAAAQEYAEET-----------GATFIPPFDDP---DVIAGQGTVAVEILEQLE 175
Query: 120 EKWGGKPDVLLACVGSGSNALGL---FHEFINDEDVRLIGVEAAG 161
+ G PD + VG G G+ E ++IGVE AG
Sbjct: 176 K--EGSPDYVFVPVGGGGLISGVTTYLKER--SPKTKIIGVEPAG 216
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 30.1 bits (69), Expect = 1.4
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 7 GRKSIVAATGAGQH--GVATAAACAKLALDCTVFM--GTADMEKQSSKVLLMKLLGAQV- 61
+ +VAA+ AG H GVA AA+ L + T+ M SKV + GA+V
Sbjct: 69 RARGVVAAS-AGNHAQGVAYAAS--LLGIKATIVMPETAP-----LSKVKATRSYGAEVV 120
Query: 62 ---KAVDGCFKEA 71
D +A
Sbjct: 121 LHGDVYDEALAKA 133
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. CysM differs from CysK in
that it can also use thiosulfate instead of sulfide, to
produce cysteine thiosulfonate instead of cysteine.
Alternate name: O-acetylserine (thiol)-lyase [Amino acid
biosynthesis, Serine family].
Length = 290
Score = 29.5 bits (66), Expect = 1.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 232 QEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGG 280
++A + L EGIF + + A+A +L LP+ V + C G
Sbjct: 233 RDAENTMRELAVREGIFCGVSSGGAVAAALRLARELPDAVVVAIICDRG 281
>gnl|CDD|213328 cd04519, RasGAP, Ras GTPase Activating Domain. RasGAP functions as
an enhancer of the hydrolysis of GTP that is bound to
Ras-GTPases. Proteins having a RasGAP domain include
p120GAP, IQGAP, Rab5-activating protein 6, and
Neurofibromin, among others. Although the Rho (Ras
homolog) GTPases are most closely related to members of
the Ras family, RhoGAP and RasGAP exhibit no similarity
at their amino acid sequence level. RasGTPases function
as molecular switches in a large number of signaling
pathways. They are in the on state when bound to GTP,
and in the off state when bound to GDP. The RasGAP
domain speeds up the hydrolysis of GTP in Ras-like
proteins acting as a negative regulator.
Length = 256
Score = 29.4 bits (66), Expect = 1.9
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 99 CPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN 148
P +R I+ R+ E++ +PD V LF FI
Sbjct: 146 LPPELRYVFKIL----REFLAERFPEEPDEAYQAVSG-----FLFLRFIC 186
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 28.5 bits (64), Expect = 4.0
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 61
RK +VA + AG H A +CA L +D V M SKV GA+V
Sbjct: 75 RKGVVACS-AGNHAQGVALSCALLGIDGKVVM---PKGAPKSKVAATCGYGAEV 124
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long
form. This model describes a form of threonine
ammonia-lyase, a pyridoxal-phosphate dependent enzyme,
with two copies of the threonine dehydratase C-terminal
domain (pfam00585). Members with known function
participate in isoleucine biosynthesis and are inhibited
by isoleucine. Alternate name: threonine deaminase,
threonine dehydratase. Forms scoring between the trusted
and noise cutoff tend to branch with this subgroup of
threonine ammonia-lyase phylogenetically but have only a
single copy of the C-terminal domain [Amino acid
biosynthesis, Pyruvate family].
Length = 499
Score = 28.5 bits (64), Expect = 4.3
Identities = 45/170 (26%), Positives = 66/170 (38%), Gaps = 26/170 (15%)
Query: 12 VAATGAGQHGVATAAACAKLALDCTVFM--GTADMEKQSSKVLLMKLLGAQVKAVDGCFK 69
V A AG H A + A+L L + M T D+ KV ++ G +V F
Sbjct: 68 VIAASAGNHAQGVAFSAARLGLKALIVMPETTPDI-----KVDAVRGFGGEVVLHGANFD 122
Query: 70 EASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVL 129
+A ++AI L + L T + P P +V Q + E +Q D +
Sbjct: 123 DAKAKAIE-----LSQEKGL--TFIHPFDDP-LVIAGQGTLALEILRQV----ANPLDAV 170
Query: 130 LACVGSGSNALGLFHEFIND--EDVRLIGVEAAGFGLDSGKHAATLAKGE 177
VG G A G+ I ++++IGVE DS L GE
Sbjct: 171 FVPVGGGGLAAGV-AALIKQLMPEIKVIGVEPT----DSDCMKQALDAGE 215
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 28.3 bits (63), Expect = 4.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALD 34
+I + ++ ATG G HG A A +L D
Sbjct: 329 VIGRAAPLPNLYVATGHGGHGFTLAPALGRLLAD 362
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 28.2 bits (63), Expect = 5.0
Identities = 50/200 (25%), Positives = 73/200 (36%), Gaps = 43/200 (21%)
Query: 7 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV----K 62
R+ V A AG H A A K + + M + SKV K GA+V
Sbjct: 46 QRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPES---APPSKVKATKSYGAEVILHGD 102
Query: 63 AVDGCFKEASS---EAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAM 119
D + A+S E R +V + + + G Q IG E M
Sbjct: 103 DYDEAYAFATSLAEEEGRVFVHPFDDEFVMAG---------------QGTIGLE----IM 143
Query: 120 EKWGGKPDVLLACVGSGS--NALGLFHEFINDEDVRLIGVEAAGF-----GLDSGK---- 168
E D ++ VG G + + + IN +V++IGVEA G L GK
Sbjct: 144 ED-IPDVDTVIVPVGGGGLISGVASAAKQINP-NVKVIGVEAEGAPSMYESLREGKIKAV 201
Query: 169 -HAATLAKGEVGVYHGAMSY 187
T+A G G +++
Sbjct: 202 ESVRTIADGIAVKKPGDLTF 221
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB. Members
of this protein family are EutB, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida.
Members of this family resemble threonine dehydratases.
Length = 317
Score = 28.3 bits (63), Expect = 5.7
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 8 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 67
R + V A G HG A A A A+ + T+ M +KV ++ LGA+V+ V
Sbjct: 66 RAAGVVAASTGNHGRALAYAAAEEGVRATICMSEL---VPQNKVDEIRRLGAEVRIVGRS 122
Query: 68 FKEASSEAIR 77
+A E R
Sbjct: 123 QDDAQEEVER 132
>gnl|CDD|107350 cd06355, PBP1_FmdD_like, Periplasmic component (FmdD) of an active
transport system for short-chain amides and urea
(FmdDEF). This group includes the periplasmic component
(FmdD) of an active transport system for short-chain
amides and urea (FmdDEF), found in Methylophilus
methylotrophus, and its homologs from other bacteria.
FmdD, a type I periplasmic binding protein, is induced
by short-chain amides and urea and repressed by excess
ammonia, while FmdE and FmdF are hydrophobic
transmembrane proteins. FmdDEF is predicted to be an
ATP-dependent transporter and closely resembles the
periplasmic binding protein and the two transmembrane
proteins present in various hydrophobic amino
acid-binding transport systems.
Length = 348
Score = 28.0 bits (63), Expect = 6.1
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 89 LTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEF-- 146
L G VVG P+ +FQSII K K A KPDV+++ V SN + F +
Sbjct: 160 LGGEVVGEEYLPLGHTDFQSIINK--IKAA------KPDVVVSTVNGDSN-VAFFKQLKA 210
Query: 147 --INDEDVRLIGV-----EAAGFG 163
I V ++ E G G
Sbjct: 211 AGITASKVPVLSFSVAEEELRGIG 234
>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 27.7 bits (62), Expect = 7.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 12 VAATGAGQHGVATAAACAKLALDCTVF 38
+A GAG GV TA A A+ TVF
Sbjct: 4 IAVIGAGITGVTTAYALAQRGYQVTVF 30
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 27.6 bits (62), Expect = 9.6
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 120 EKWGGKPDVLLACVGSGSNALGL 142
E W GK D LL+ +G A+GL
Sbjct: 2 ETWSGKLDFLLSVIGF---AVGL 21
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,960,297
Number of extensions: 1455578
Number of successful extensions: 1630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1576
Number of HSP's successfully gapped: 82
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)