RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022573
(295 letters)
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 228 bits (581), Expect = 3e-73
Identities = 155/294 (52%), Positives = 213/294 (72%), Gaps = 3/294 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
++AK MG+ ++A TGAGQHGVATA A A L + ++MG D+E+Q V MKLLGA
Sbjct: 91 LLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGAN 150
Query: 61 VKAVDGC---FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V+ K+A +EA+R+WV E ++YL G+VVGPHP P +VR+FQS+IG+E + Q
Sbjct: 151 VIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQ 210
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
+E G PDV++ACVG GSNA+G+F+ F+ND+ V+L+GVEA G GL+SGKH+A+L G+
Sbjct: 211 ILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQ 270
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VGV+HG +SY LQDEEGQI THS+ GL+YPGVGPE ++L+ RAE+ T TD+EA++A
Sbjct: 271 VGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKA 330
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291
+ L R EGI PALE++HA+A+ KL + ++VN SG GDKD+D V+
Sbjct: 331 FHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKV 384
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 223 bits (569), Expect = 2e-71
Identities = 144/295 (48%), Positives = 205/295 (69%), Gaps = 4/295 (1%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
++AKRMG+ I+A TGAGQHGVA+A A A L L C ++MG D+E+QS V M+L+GA+
Sbjct: 95 LLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 154
Query: 61 VKAVD---GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
V V K+A +EA+R+W G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q
Sbjct: 155 VIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQ 214
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
++K G PD ++ACVG GSNA+G+F +FIND V LIGVE G G+++G+H A L G
Sbjct: 215 ILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGR 274
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
VG+Y G + ++Q +GQI ++S+ GL++P VGP+ ++L GRA++ + TD EA++A
Sbjct: 275 VGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEA 334
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTVVNY 291
++ LCR EGI PALE+SHALA K+ P + +VVN SG GDKD+ TV +
Sbjct: 335 FKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDI 389
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 96.7 bits (240), Expect = 4e-24
Identities = 47/288 (16%), Positives = 92/288 (31%), Gaps = 44/288 (15%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
A++ G + A + M + + ++K+LGA++
Sbjct: 48 AEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVE--RRKVLKMLGAELV 105
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 122
G + LE S ++ P V Q G E +++
Sbjct: 106 LTPGELGMKGAVEKA-----LEISRETGAHMLNQFENPYNVYSHQFTTGPEI----LKQM 156
Query: 123 GGKPDVLLACVGSGSNALGLFHEF--INDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGV 180
+ D +A VG+G G+ V+++ VE A + L+ G+ G
Sbjct: 157 DYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAK--------SPVLSGGQPGK 208
Query: 181 YHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQR 240
+ ++ G G L + E T D+EA + +
Sbjct: 209 H-----------------------AIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARY 245
Query: 241 LCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 288
L + EG+ + + +A K+ L A+VV ++ + +
Sbjct: 246 LAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLSIL 293
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 87.3 bits (215), Expect = 3e-20
Identities = 53/290 (18%), Positives = 97/290 (33%), Gaps = 37/290 (12%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
+ + +G G+ A A A C + M + S KV +++ LGA++
Sbjct: 91 DGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVM---PEKMSSEKVDVLRALGAEIV 147
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKET-RKQAMEK 121
+ S E+ L+ H + +T + +++
Sbjct: 148 RTPTNARFDSPESHVGVAWRLKNEIP------NSHILDQYRNASNPLAHYDTTADEILQQ 201
Query: 122 WGGKPDVLLACVGSGSNALGLFHEFIND-EDVRLIGVEAAGFGLDSGKHAATLAKGEVGV 180
GK D+L+A VG+G G+ + R+IGV+ G + LA+ E
Sbjct: 202 CDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEG---------SILAEPEELN 252
Query: 181 YHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQR 240
+Y +E G + L T +++ + D+EA +
Sbjct: 253 QTEQTTY-----------------EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 295
Query: 241 LCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 290
L EG+ A +A K L G + VV + ++
Sbjct: 296 LIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLS 345
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 84.0 bits (206), Expect = 4e-19
Identities = 43/292 (14%), Positives = 85/292 (29%), Gaps = 43/292 (14%)
Query: 3 AKRMGRKSIVAATGA-GQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 61
A G ++V+ G AA A L + C + + + + +++
Sbjct: 62 ALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRI 121
Query: 62 KAVDGCFKEASS--------EAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 113
D E V Y HP + +
Sbjct: 122 LGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEE--- 178
Query: 114 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDV-RLIGVEAAGFGLDSGKHAAT 172
+ + G K D ++ C +GS G+ F D R+IGV+A+ + +
Sbjct: 179 -VRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITR 237
Query: 173 LAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQ 232
+A+ + L + Y ++
Sbjct: 238 IARQTAEKVGL------------------------ERDIMRADVVLDERFAGPEYGLPNE 273
Query: 233 EAVQAYQRLCRLEGIF--PALEASHALAFLEKLC--PTLPNGAKVVVNCSGG 280
++A + R EG+ P E ++ + ++ P G++V+ GG
Sbjct: 274 GTLEAIRLCARTEGMLTDPVYEG-KSMHGMIEMVRNGEFPEGSRVLYAHLGG 324
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 80.3 bits (197), Expect = 6e-18
Identities = 45/287 (15%), Positives = 78/287 (27%), Gaps = 38/287 (13%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
+ V AG H A + A+L + + M TA + KV ++ G +V
Sbjct: 69 LTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADI---KVDAVRGFGGEVL 125
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 122
F E K+ + + I G+ T + +
Sbjct: 126 LHGANFDE-------------AKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQ 172
Query: 123 GGKPDVLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVY 181
D + VG G A G+ +++I VEA
Sbjct: 173 DAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAE-------------------DS 213
Query: 182 HGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRL 241
+ L + G+ +G E L + T A + L
Sbjct: 214 ACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDL 273
Query: 242 CRLEGIFPALEASHALAFLEKLCPTLPN-GAKVVVNCSGGGDKDVDT 287
+ ALA ++K G ++ S G + +
Sbjct: 274 FEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILS-GANVNFHG 319
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 78.0 bits (191), Expect = 3e-17
Identities = 43/285 (15%), Positives = 77/285 (27%), Gaps = 42/285 (14%)
Query: 5 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV 64
R G ++ +G G+ A A + M E + +
Sbjct: 58 RPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSE--------ERKRVLKAFGA 109
Query: 65 DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG 124
+ + + L L + P VR G E E G
Sbjct: 110 ELVLTDPERRMLAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPEL----YEALEG 165
Query: 125 KPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGA 184
+ D + G+G G+ + + V
Sbjct: 166 RIDAFVYGSGTGGTITGVGRYLKERIPHVKV----------------------IAVEPAR 203
Query: 185 MSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRL 244
+ L + GQ G + G G L + +++A +RL R
Sbjct: 204 SNVLSGGKMGQH--------GFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLARE 255
Query: 245 EGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 289
EG+F + + + ++ L G +V GG K + T +
Sbjct: 256 EGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKYLSTPL 300
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 75.5 bits (184), Expect = 4e-16
Identities = 40/290 (13%), Positives = 80/290 (27%), Gaps = 38/290 (13%)
Query: 3 AKRMGRKSIVAATG-AGQHGVATAAACAKLALDCTVFM--------GTADMEKQSSKVLL 53
+V+ G AA AKL C + D+ + + L
Sbjct: 62 IVEGDYTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIEL 121
Query: 54 MKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 113
+++GA V+ ++ F ++ N + LE + + + + +
Sbjct: 122 SRIMGADVRVIEDGFDIGMRKSFANALQELEDAGH-KPYPIPAGCSEHKYGGLGFVGFAD 180
Query: 114 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATL 173
+ G K D ++ C +GS G+ +
Sbjct: 181 EVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDV------------------ 222
Query: 174 AKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQE 233
S+ + + Q L + L + L Y ++
Sbjct: 223 -------IAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEG 275
Query: 234 AVQAYQRLCRLEGIFPALEAS-HALAFLEKLC--PTLPNGAKVVVNCSGG 280
++A + EG+ ++ L L GA V+ GG
Sbjct: 276 TIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLGG 325
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 74.0 bits (180), Expect = 1e-15
Identities = 45/291 (15%), Positives = 83/291 (28%), Gaps = 34/291 (11%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
A G +++ A+ A A A L V + ++ L+
Sbjct: 72 AVEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVH-------- 123
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 122
G + + +K + P E Q + E + +
Sbjct: 124 ---GARIVQVEGNFDDALRLTQKLTEAFPVALVNSVNP-HRLEGQKTLAFEVVDELGDAP 179
Query: 123 GGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYH 182
VG+ N + + + +G
Sbjct: 180 ----HYHALPVGNAGNITAHWMGYKAYHALGKAKRLPR----------------MLGFQA 219
Query: 183 GAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLC 242
+ L+ + T + + + P ++ TD+E + AY+ L
Sbjct: 220 AGAAPLVLGRPVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLA 279
Query: 243 RLEGIFPALEASHALAFLEKLC--PTLPNGAKVVVNCSGGGDKDVDTVVNY 291
R EGIF ++ A+A + KL L + VV+ +G G KD T
Sbjct: 280 REEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATAERV 330
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 68.9 bits (167), Expect = 8e-14
Identities = 36/293 (12%), Positives = 78/293 (26%), Gaps = 26/293 (8%)
Query: 1 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
+ + + A+ G A +A CA + VF+ + +L+
Sbjct: 168 LRKMKRPVVGVGCAS-TGDTSAALSAYCASAGIPSIVFLPANKISM-------AQLVQPI 219
Query: 61 VKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAME 120
+ + + + + + + + +
Sbjct: 220 ANGAFVLSIDTDFDGCMKLIREITAELPI-------YLANSLNSLRLEGQKTAAIEILQQ 272
Query: 121 KWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGV 180
PD ++ G+ N + F ++ G + A +
Sbjct: 273 FDWQVPDWVIVPGGNLGNIYAFYKGFKMCQE--------LGLVDRIPRMVCAQAANANPL 324
Query: 181 YHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQR 240
Y S + T + + + P + AT++E + A
Sbjct: 325 YLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAM-A 383
Query: 241 LCRLEGIFPALEASHALAFLEKLC--PTLPNGAKVVVNCSGGGDKDVDTVVNY 291
G+F AL L KL + + VV + G K + ++Y
Sbjct: 384 QADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDY 436
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 66.9 bits (162), Expect = 3e-13
Identities = 48/288 (16%), Positives = 88/288 (30%), Gaps = 42/288 (14%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
RK+ V +G H A A + L + + M E +KV K G QV
Sbjct: 63 LNEAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPE---AKVAATKGYGGQVI 119
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 122
D + A + + LT ++ P+ P + + G+ T + + +
Sbjct: 120 MYDRYKDDREKMAKE-----ISEREGLT--IIPPYDHPHV------LAGQGTAAKELFEE 166
Query: 123 GGKPDVLLACVGSGSNALGL---FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVG 179
G D L C+G G G F + +V + EA G S + + +
Sbjct: 167 VGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPK 226
Query: 180 VYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQ 239
+ +G + + T +D+E + +
Sbjct: 227 TIADGA---------------------QTQHLGNYTFSIIKEKVDDILTVSDEELIDCLK 265
Query: 240 RLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 287
I + A + L N ++ GG+ D++
Sbjct: 266 FYAARMKIVVEPTGCLSFAAARAMKEKLKNKRIGIIIS--GGNVDIER 311
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 59.9 bits (144), Expect = 5e-11
Identities = 54/280 (19%), Positives = 87/280 (31%), Gaps = 31/280 (11%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
A++ G +G A A T + L+K LGA +
Sbjct: 52 AEKRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLV 111
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 122
+G + + + YL ++ P + G E E
Sbjct: 112 LTEGAKGMKGAIQKAEEIVASDPQKYL---LLQQFSNPANPEIHEKTTGPEI----WEDT 164
Query: 123 GGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYH 182
G+ DV ++ VG+G L +I + + A DS A LA E+
Sbjct: 165 DGQVDVFISGVGTGGT-LTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGP 223
Query: 183 GAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLC 242
+ G+ G G L + T++EA+ +RL
Sbjct: 224 HKIQ------------------GI---GAGFIPGNLDLKLIDKVVGITNEEAISTARRLM 262
Query: 243 RLEGIFPALEASHALAFLEKLC--PTLPNGAKVVVNCSGG 280
EGI + + A+A KL + N VV+ S G
Sbjct: 263 EEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSG 302
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 60.2 bits (145), Expect = 5e-11
Identities = 45/295 (15%), Positives = 81/295 (27%), Gaps = 53/295 (17%)
Query: 1 MIA---KRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLL 57
+I+ +R+ + S+VA + GVA +A V++ A E L
Sbjct: 133 IISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEE--------FGKL 184
Query: 58 GAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
++ + + ++ S V +E Q
Sbjct: 185 LPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQ 244
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
+ V + SG + F+ D +R + V+ A G
Sbjct: 245 SRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIR-------- 296
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
+E + + + T +EA++A
Sbjct: 297 ---------------------------RVETGMLWINMLDISY----TLAEVTLEEAMEA 325
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLC--PTLPNGAKVVVNCSGGGDKDVDTVVN 290
+ R +G+ A+ L K L G VVV G K + V N
Sbjct: 326 VVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPD-TGFKYLSLVQN 379
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 60.1 bits (144), Expect = 6e-11
Identities = 40/279 (14%), Positives = 67/279 (24%), Gaps = 37/279 (13%)
Query: 4 KRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 63
+ I H T A KL LD + + + K + + + + +V
Sbjct: 67 SKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYD 126
Query: 64 VDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG 123
F+ E G P + + +
Sbjct: 127 AKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRA-------VGEIATQSE 179
Query: 124 GKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHG 183
K D ++ GSG GL +
Sbjct: 180 VKFDSIVVAAGSGGTLAGLSLGLSILNEDI---------------------------RPV 212
Query: 184 AMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 243
++ E + + E GV E+ Y E Q +++
Sbjct: 213 GIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGT 272
Query: 244 LEGIF--PALEASHALAFLEKLCPTLPNGAKVVVNCSGG 280
EGI P A L L G K++ +GG
Sbjct: 273 REGIILDPVYTG-KAFYGLVDLARKGELGEKILFIHTGG 310
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 50.8 bits (120), Expect = 5e-08
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 208 YPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTL 267
+G + T +++ ++A + L + LA + + L
Sbjct: 234 TLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL 293
Query: 268 PNGAKVVVNCSGG 280
+ + SGG
Sbjct: 294 --PQTLALLLSGG 304
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 50.3 bits (119), Expect = 7e-08
Identities = 42/287 (14%), Positives = 81/287 (28%), Gaps = 50/287 (17%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
+ ++ +G G+A A A + M +++ + M+ GA++
Sbjct: 54 RGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA---MRAYGAELI 110
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 122
V + + + N + + P + G E ++
Sbjct: 111 LVTKEQGMEGARDLALEMANRGEGKL-----LDQFNNPDNPYAHYTTTGPEI----WQQT 161
Query: 123 GGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYH 182
GG+ ++ +G+ G+
Sbjct: 162 GGRITHFVSSMGTTGTITGVSRFMRE-------------------------------QSK 190
Query: 183 GAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLC 242
LQ EEG + PG+ E ++A + L
Sbjct: 191 PVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLV------DEVLDIHQRDAENTMRELA 244
Query: 243 RLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 289
EGIF + + A+A ++ P A VV GD+ + T V
Sbjct: 245 VREGIFCGVSSGGAVAGALRVAKANP-DAVVVAIICDRGDRYLSTGV 290
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 50.3 bits (119), Expect = 8e-08
Identities = 46/288 (15%), Positives = 83/288 (28%), Gaps = 34/288 (11%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
+ + + +G G+A A A A + + + K LL L V
Sbjct: 55 DGTLTKGKEIVDATSGNTGIALAYVAA--ARGYKITLTMPETMSLERKRLLCGLGVNLVL 112
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 122
+ + S ++ P + + G E +
Sbjct: 113 TEGAKGMKGAIAKAEEI----VASDPSRYVMLKQFENPANPQIHRETTGPE----IWKDT 164
Query: 123 GGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYH 182
GK DV++A VG+G + G + + V
Sbjct: 165 DGKVDVVVAGVGTGGSITG------------------ISRAIKLDFGKQITSVAVEPVES 206
Query: 183 GAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLC 242
+S L EE + G+G G L + T A+ +RL
Sbjct: 207 PVISQTLAGEEVKPGPHKIQGIG-----AGFIPKNLDLSIIDRVETVDSDTALATARRLM 261
Query: 243 RLEGIFPALEASHALAFLEKLCPTLPN-GAKVVVNCSGGGDKDVDTVV 289
EGI + + A+A ++L +VV ++ + T +
Sbjct: 262 AEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTAL 309
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 44.9 bits (105), Expect = 4e-06
Identities = 41/290 (14%), Positives = 82/290 (28%), Gaps = 40/290 (13%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQS-SKVLLMKLLGAQV 61
A++ G + T A A + S + +++ G ++
Sbjct: 55 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVEL 114
Query: 62 KAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEK 121
D + A + + Y ++ P + G E K
Sbjct: 115 VLTDPAKGMKGAIAKAEEILAKTPNGY----MLQQFENPANPKIHYETTGPEIWKGTG-- 168
Query: 122 WGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVY 181
GK D ++ +G+G G + +A L+ G+ G +
Sbjct: 169 --GKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVE-------PVESAILSGGKPGPH 219
Query: 182 HGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRL 241
+G G + ++ E + E++ ++L
Sbjct: 220 K----------------IQGIGAGFIPSVLNVDL-------IDEVVQVSSDESIDMARQL 256
Query: 242 CRLEGIFPALEASHALAFLEKLCPTLPN-GAKVVVNCSGGGDKDVDTVVN 290
EG+ + + A A KL N G V G++ + TV+
Sbjct: 257 ALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLF 306
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 41.3 bits (95), Expect = 8e-05
Identities = 42/294 (14%), Positives = 79/294 (26%), Gaps = 42/294 (14%)
Query: 3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 62
+ G V ++ AG G+A A A +L + T+ +
Sbjct: 49 WAKQGCAHFVCSS-AGNAGMAAAYAARQLGVPATIVVPGTTPALTI-------------- 93
Query: 63 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 122
+ + L++++ L + +P + + F + E +++
Sbjct: 94 ----ERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKEL 149
Query: 123 GGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYH 182
+ GL + G + E H
Sbjct: 150 KETLWEKPGAIALSVGGGGLLCGV-------------VQGLQECGWGDVPVIAMETFGAH 196
Query: 183 GAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLC 242
+ + + SV L VG + L +DQEAV A ++
Sbjct: 197 SFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFV 256
Query: 243 RLEGIFPALEASHALAFLEKLC---------PTLPNGAKVVVNCSGGGDKDVDT 287
E I ALA + P + VV+ C G + +
Sbjct: 257 DDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCG-GSNISLAQ 309
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 29.8 bits (66), Expect = 0.35
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 12 VAATGAGQHGVATAAACAKLALDCTVF 38
V GAG G+ +L V
Sbjct: 10 VLVVGAGFSGLYALYRLRELGRSVHVI 36
>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus
actinomycetemcomitans [TaxId: 714]}
Length = 344
Score = 28.6 bits (63), Expect = 0.81
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 13/135 (9%)
Query: 161 GFGLDSGKHAATLAKGEVGVYHGAMSYL--------LQDEEGQILGTHSVGVGLEYPGVG 212
G LD +H + + + +S D E + +H + E G
Sbjct: 5 GLMLDIARHFYSPE--VIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQG 62
Query: 213 PEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALE-ASHALAFLEKLCPTLPNGA 271
+ ++ F + + ++AY + + + P L+ +H A KL
Sbjct: 63 KDGIYINPYTGKPFLSYRQLDDIKAYAKA-KGIELIPELDSPNHMTAIF-KLVQKDRGVK 120
Query: 272 KVVVNCSGGGDKDVD 286
+ S D ++D
Sbjct: 121 YLQGLKSRQVDDEID 135
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 28.6 bits (63), Expect = 1.1
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 120 EKWGGKPDVLLACVGSGSNALGL 142
E W + ++LA G+ A+GL
Sbjct: 2 EHWATRLGLILAMAGN---AVGL 21
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
{Bacillus sp. [TaxId: 1409]}
Length = 276
Score = 27.0 bits (58), Expect = 2.6
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 6 MGRKSIVAATGAGQHGVATAAACAKLALDCTVF 38
M R G G G A A AK + +F
Sbjct: 1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALF 33
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 26.5 bits (57), Expect = 3.2
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 267 LPNGAKVVVNCSGGGDKDVDTVV 289
LP G ++ + SGG +DT
Sbjct: 7 LPVGQRIGIAFSGG----LDTSA 25
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae
[TaxId: 573]}
Length = 131
Score = 26.0 bits (57), Expect = 3.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 164 LDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLE 207
L + K ++ KG +G S + D G+++G SVG +E
Sbjct: 84 LINAKSYVSVRKGSLGSSLRGKSPIQ-DATGKVIGIVSVGYTIE 126
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 140
Score = 25.6 bits (56), Expect = 5.1
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 86 SYYLTGTVVGPHPCPIMVREFQS 108
S+Y +VG H P+ EF
Sbjct: 4 SFYFV--IVGHHDNPVFEMEFLP 24
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 265
Score = 25.9 bits (55), Expect = 6.3
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 12 VAATGAGQHGVATAAACAKLALDCTVF 38
+A G G+ A +D V+
Sbjct: 7 IAVVGGSISGLTAALMLRDAGVDVDVY 33
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 25.8 bits (55), Expect = 7.4
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 12 VAATGAGQHGVATAAACAKLALDCTVF 38
V GAG G+A AK + +
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria
meningitidis [TaxId: 487]}
Length = 173
Score = 25.0 bits (54), Expect = 8.9
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 207 EYPGVGPEISFLRDTGRAEFYTATDQEAVQAY-QRLCRLEGIFPALEASHALAF 259
+P + + + E V + G+ P LE L
Sbjct: 118 PWPQIKAVVLKAENNPALGKIDIEPGETVWQALTHIANSVGLHPWLEPDGTLVV 171
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 25.6 bits (54), Expect = 8.9
Identities = 2/23 (8%), Positives = 4/23 (17%)
Query: 16 GAGQHGVATAAACAKLALDCTVF 38
G G + +
Sbjct: 13 GTGLTECILSGIMSVNGKKVLHM 35
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 25.5 bits (54), Expect = 9.3
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 12 VAATGAGQHGVATAAACAKLALDCTVF 38
V GAG G++ A A TV
Sbjct: 33 VVIVGAGMAGLSAAYVLAGAGHQVTVL 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,874
Number of extensions: 49842
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 40
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)