Query 022574
Match_columns 295
No_of_seqs 154 out of 1571
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 07:40:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2.9E-38 1E-42 286.1 16.4 208 28-294 81-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1E-37 3.5E-42 281.6 15.9 197 53-293 4-202 (297)
3 1okc_A ADP, ATP carrier protei 100.0 4.6E-38 1.6E-42 283.9 11.5 212 29-292 85-297 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.7E-36 5.8E-41 274.5 15.6 192 58-294 3-194 (303)
5 3tgu_G UQCRQ, mitochondrial ub 26.6 68 0.0023 22.2 3.6 33 259-291 33-65 (81)
6 3f2e_A SIRV coat protein; four 18.4 58 0.002 22.3 1.8 33 233-275 7-43 (100)
7 1pp9_G Ubiquinol-cytochrome C 16.1 1.4E+02 0.0046 20.6 3.3 33 259-291 33-65 (81)
8 2l5r_A Antimicrobial peptide a 13.4 1.5E+02 0.0052 15.1 2.2 14 259-272 9-22 (26)
9 2acm_A Mucin-1; auto-catalytic 11.7 43 0.0015 21.7 -0.3 20 134-153 40-59 (66)
10 4b19_A PEPA1; toxin, toxin apo 8.8 1.6E+02 0.0056 16.2 1.4 23 194-216 3-25 (30)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.9e-38 Score=286.09 Aligned_cols=208 Identities=20% Similarity=0.247 Sum_probs=179.8
Q ss_pred cccccccccccccccccCCCcCCCCCCCHHHHHHHHhHHHHHHHHHhccHHHHHHHHHhhccCCCCCCcccccccccchh
Q 022574 28 SSVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMM 107 (295)
Q Consensus 28 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vKtr~Q~~~~~~~~~~~~~~~~~~~~~~ 107 (295)
.++.+..||..++...+..+ ..+....+++|++||+++.++++|+|+||+|+|++...
T Consensus 81 ~~i~f~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~----------------- 138 (303)
T 2lck_A 81 ASVRIGLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA----------------- 138 (303)
T ss_dssp HHHTTTHHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-----------------
T ss_pred HHHHHHHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-----------------
Confidence 45566678877654433211 36789999999999999999999999999999998621
Q ss_pred hhccCCCCCCcCCCCCCCCCCCccCCCchhHHHHHHHhhhchhhhccccchhhhhhcccceeehhHHHHHHHHHhhhcCC
Q 022574 108 LSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTG 187 (295)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gLyrG~~~~l~~~~~~~~~~f~~y~~~k~~l~~~~~~ 187 (295)
.....|+++++++++|+++||++|||||+.|++++.++..+++|.+||.+|+.+.+....
T Consensus 139 --------------------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~ 198 (303)
T 2lck_A 139 --------------------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM 198 (303)
T ss_dssp --------------------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC
T ss_pred --------------------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 112268899999999999999999999999999999999999999999999988654322
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccCCCCCCCCCHHHHHHHHhhcccccCcccccccHHHHhhhh
Q 022574 188 NAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGV 267 (295)
Q Consensus 188 ~~~~~~~~~~~~ag~~ag~~~~~v~~P~dvvktR~q~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~G~~gLyrG~ 267 (295)
.......+++|++||++++++++|+|+||||||.+.. ..|.+.++|+++|+++| |++|||||+
T Consensus 199 ---~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----~~y~~~~~~~~~i~~~e----------G~~glyrG~ 261 (303)
T 2lck_A 199 ---TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----GQYHSAGHCALTMLRKE----------GPRAFYKGF 261 (303)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----SSCCSHHHHHHHHHHSS----------CTHHHHSCC
T ss_pred ---CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----cccCCHHHHHHHHHHHc----------ChHHhhccH
Confidence 2346788999999999999999999999999999863 36899999999999999 999999999
Q ss_pred HHHHHhhhhhhhhHHHhhHHhhhcCCC
Q 022574 268 GAQLARDVPFSAICWSTLEPEKYSFPG 294 (295)
Q Consensus 268 ~~~~~r~~~~~~i~f~~ye~~k~~l~~ 294 (295)
.++++|.+|..+++|.+||.+|+.+.+
T Consensus 262 ~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 262 MPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998763
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1e-37 Score=281.57 Aligned_cols=197 Identities=21% Similarity=0.337 Sum_probs=167.5
Q ss_pred CCCHHHHHHHHhHHHHHHHHHhccHHHHHHHHHhhccCCCCCCcccccccccchhhhccCCCCCCcCCCCCCCCCCCccC
Q 022574 53 SLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNR 132 (295)
Q Consensus 53 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vKtr~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (295)
.++++..+++|++||+++.++++|+|+||+|+|++..... ......
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~----------------------------------~~~~~~ 49 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ----------------------------------ISAEKQ 49 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS----------------------------------CCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc----------------------------------cccccc
Confidence 3467899999999999999999999999999999873210 111236
Q ss_pred CCchhHHHHHHHhhhchhhhccccchhhhhhcccceeehhHHHHHHHHHhhhcCCCCC-CCCchHHHHHHHHHHHHHHHH
Q 022574 133 YKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAP-MLTPYVPLVAGSVARSLACIS 211 (295)
Q Consensus 133 ~~~~~~~~~~i~~~~G~~gLyrG~~~~l~~~~~~~~~~f~~y~~~k~~l~~~~~~~~~-~~~~~~~~~ag~~ag~~~~~v 211 (295)
|+++++++++|+++||++|||||+.+++++.++..+++|.+||.+|+.+......... .......+++|++||++++++
T Consensus 50 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~ 129 (297)
T 1okc_A 50 YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF 129 (297)
T ss_dssp CCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999965432221111 012356899999999999999
Q ss_pred HhhHHHHHHHHhhcccCC-CCCCCCCHHHHHHHHhhcccccCcccccccHHHHhhhhHHHHHhhhhhhhhHHHhhHHhhh
Q 022574 212 CYPIELARTRMQAFTETQ-SGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPEKY 290 (295)
Q Consensus 212 ~~P~dvvktR~q~~~~~~-~~~~~~~~~~~~~~i~~~e~~~~~~~~~~G~~gLyrG~~~~~~r~~~~~~i~f~~ye~~k~ 290 (295)
++|+|+||||||++.... ....|++.++++++|+++| |++|||||+.++++|.+|+.+++|.+||.+|+
T Consensus 130 ~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~e----------G~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~ 199 (297)
T 1okc_A 130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD----------GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG 199 (297)
T ss_dssp HHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHH----------CHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhc----------cHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999985422 1347899999999999999 99999999999999999999999999999999
Q ss_pred cCC
Q 022574 291 SFP 293 (295)
Q Consensus 291 ~l~ 293 (295)
.+.
T Consensus 200 ~~~ 202 (297)
T 1okc_A 200 MLP 202 (297)
T ss_dssp SSC
T ss_pred Hhc
Confidence 774
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.6e-38 Score=283.87 Aligned_cols=212 Identities=18% Similarity=0.237 Sum_probs=169.4
Q ss_pred ccccccccccccccccCCCcCCCCCCCHHHHHHHHhHHHHHHHHHhccHHHHHHHHHhhccCCCCCCcccccccccchhh
Q 022574 29 SVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMML 108 (295)
Q Consensus 29 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vKtr~Q~~~~~~~~~~~~~~~~~~~~~~~ 108 (295)
++.++.||..++......+.......++...+++|++||+++.++++|+|+||+|+|++...
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~------------------ 146 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK------------------ 146 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS------------------
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC------------------
Confidence 44455677766432222111111112457889999999999999999999999999998521
Q ss_pred hccCCCCCCcCCCCCCCCCCCccCCCchhHHHHHHHhhhchhhhccccchhhhhhcccceeehhHHHHHHHHHhhhcCCC
Q 022574 109 SDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGN 188 (295)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gLyrG~~~~l~~~~~~~~~~f~~y~~~k~~l~~~~~~~ 188 (295)
......|+++++++++|+++||++|||||+.|++++.+|..+++|.+||.+|+.+.+...
T Consensus 147 ------------------~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~-- 206 (297)
T 1okc_A 147 ------------------GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN-- 206 (297)
T ss_dssp ------------------STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC--
T ss_pred ------------------CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCC--
Confidence 011236889999999999999999999999999999999999999999999997754322
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccCC-CCCCCCCHHHHHHHHhhcccccCcccccccHHHHhhhh
Q 022574 189 APMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQ-SGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGV 267 (295)
Q Consensus 189 ~~~~~~~~~~~ag~~ag~~~~~v~~P~dvvktR~q~~~~~~-~~~~~~~~~~~~~~i~~~e~~~~~~~~~~G~~gLyrG~ 267 (295)
......+++|++||++++++++|+|+||||||++.... ....|++.++|+++|+++| |++|||||+
T Consensus 207 ---~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~e----------G~~glyrG~ 273 (297)
T 1okc_A 207 ---VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDE----------GPKAFFKGA 273 (297)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHH----------CGGGGGTTH
T ss_pred ---ccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHc----------CcCeEecch
Confidence 24677899999999999999999999999999975422 2247999999999999999 999999999
Q ss_pred HHHHHhhhhhhhhHHHhhHHhhhcC
Q 022574 268 GAQLARDVPFSAICWSTLEPEKYSF 292 (295)
Q Consensus 268 ~~~~~r~~~~~~i~f~~ye~~k~~l 292 (295)
.++++|. +..++.|.+||.+|+++
T Consensus 274 ~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 274 WSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999995 57899999999999864
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.7e-36 Score=274.52 Aligned_cols=192 Identities=23% Similarity=0.317 Sum_probs=166.5
Q ss_pred HHHHHHhHHHHHHHHHhccHHHHHHHHHhhccCCCCCCcccccccccchhhhccCCCCCCcCCCCCCCCCCCccCCCchh
Q 022574 58 ERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTL 137 (295)
Q Consensus 58 ~~~~ag~~ag~~~~~~~~Pld~vKtr~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (295)
.++++|++||+++.++++|||+||+|+|++....... . ......|++++
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~--------------~-----------------~~~~~~~~~~~ 51 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV--------------R-----------------TAASAQYRGVL 51 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH--------------H-----------------HCSCSSCSCHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc--------------c-----------------cccCCCCCCHH
Confidence 3689999999999999999999999999986321000 0 00122688999
Q ss_pred HHHHHHHhhhchhhhccccchhhhhhcccceeehhHHHHHHHHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhHHH
Q 022574 138 DLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIEL 217 (295)
Q Consensus 138 ~~~~~i~~~~G~~gLyrG~~~~l~~~~~~~~~~f~~y~~~k~~l~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~P~dv 217 (295)
+++++|+++||+++||||+.+++++.++..+++|.+||.+|+.+.+..+ .......+++|++||+++.++++|+|+
T Consensus 52 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~----~~~~~~~~~ag~~ag~~~~~~~~Pld~ 127 (303)
T 2lck_A 52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE----HAGIGSRLLAGSTTGALAVAVAQPTDV 127 (303)
T ss_dssp HHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS----SCCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----CCcHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 9999999999999999999999999999999999999999999865421 235778999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCCHHHHHHHHhhcccccCcccccccHHHHhhhhHHHHHhhhhhhhhHHHhhHHhhhcCCC
Q 022574 218 ARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPEKYSFPG 294 (295)
Q Consensus 218 vktR~q~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~G~~gLyrG~~~~~~r~~~~~~i~f~~ye~~k~~l~~ 294 (295)
||+|+|++........|.+.++++++|+++| |++|||||+.++++|.+|+.+++|.+||.+|+.+.+
T Consensus 128 vktrlq~~~~~~~~~~~~~~~~~~~~i~~~e----------G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 128 VKVRFQAQARAGGGRRYQSTVEAYKTIAREE----------GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp HHHHHHHSCSCCCSSSCCCHHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhcccccCCCCCCCCHHHHHHHHHHhc----------ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999875433447899999999999999 999999999999999999999999999999998753
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=26.57 E-value=68 Score=22.18 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=29.9
Q ss_pred cHHHHhhhhHHHHHhhhhhhhhHHHhhHHhhhc
Q 022574 259 NYRILWTGVGAQLARDVPFSAICWSTLEPEKYS 291 (295)
Q Consensus 259 G~~gLyrG~~~~~~r~~~~~~i~f~~ye~~k~~ 291 (295)
|+...||-+..+++..+|..++.+.+|++.++.
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ 65 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQE 65 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999987653
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=18.44 E-value=58 Score=22.28 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHhhcccccCcccccccH----HHHhhhhHHHHHhhh
Q 022574 233 KPPGVWKTLVGVVNPLKSRNSSQKLQNY----RILWTGVGAQLARDV 275 (295)
Q Consensus 233 ~~~~~~~~~~~i~~~e~~~~~~~~~~G~----~gLyrG~~~~~~r~~ 275 (295)
++.+.-+-+..++.+. |+ +++|.||+..+.|..
T Consensus 7 kftsvne~vsavltqy----------gvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 7 KFTAVAEQVSAVLSQY----------GITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp -CHHHHHHHHHHHHHH----------TCCGGGHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHh----------cCCCccHHHHhhhhHHHHHHH
Confidence 6666666666666666 54 688999988877643
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=16.12 E-value=1.4e+02 Score=20.59 Aligned_cols=33 Identities=9% Similarity=-0.072 Sum_probs=28.7
Q ss_pred cHHHHhhhhHHHHHhhhhhhhhHHHhhHHhhhc
Q 022574 259 NYRILWTGVGAQLARDVPFSAICWSTLEPEKYS 291 (295)
Q Consensus 259 G~~gLyrG~~~~~~r~~~~~~i~f~~ye~~k~~ 291 (295)
|+...+|-+..+++..+|...+.+.+|++.++.
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~ 65 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQE 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHH
Confidence 788888889899999999999999999987653
No 8
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=13.35 E-value=1.5e+02 Score=15.11 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=10.8
Q ss_pred cHHHHhhhhHHHHH
Q 022574 259 NYRILWTGVGAQLA 272 (295)
Q Consensus 259 G~~gLyrG~~~~~~ 272 (295)
|+..|-+|..+.+.
T Consensus 9 glgslvkgiaahva 22 (26)
T 2l5r_A 9 GLGSLVKGIAAHVA 22 (26)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHh
Confidence 78888888877654
No 9
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=11.67 E-value=43 Score=21.70 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=17.0
Q ss_pred CchhHHHHHHHhhhchhhhc
Q 022574 134 KGTLDLFYKVVRQEGFARLW 153 (295)
Q Consensus 134 ~~~~~~~~~i~~~~G~~gLy 153 (295)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788889999999998875
No 10
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=8.82 E-value=1.6e+02 Score=16.17 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhHH
Q 022574 194 PYVPLVAGSVARSLACISCYPIE 216 (295)
Q Consensus 194 ~~~~~~ag~~ag~~~~~v~~P~d 216 (295)
.+.++++-.++|++.++++|=++
T Consensus 3 ifv~iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 3 IFVHIIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp GGTSSTTTTHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHHHHHHH
Confidence 34566777888988888887655
Done!