BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022576
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
 pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
          Length = 429

 Score = 33.5 bits (75), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 153 GYVYVRLDKLSNNMEELESYSQEY------KKKLDEVGALGEIPDDLALEVSTPGAERML 206
           GYVY+  DK +N    ++  ++ +      K+ L E+  L  +  D  + +        L
Sbjct: 42  GYVYLAYDKNANKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLHD------L 95

Query: 207 KVPDDLGRFKEMPITVCYEDQDSDSREKTGVFL 239
            +P+DL +F E+ I +   D D     KT +FL
Sbjct: 96  IIPEDLLKFDELYIVLEIADSDLKKLFKTPIFL 128


>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
           Pb000659.00.0
 pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
           Pb000659.00.0
          Length = 432

 Score = 32.3 bits (72), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 153 GYVYVRLDKLSNNMEELESYSQEY------KKKLDEVGALGEIPDDLALEVSTPGAERML 206
           GYVY+  DK +     ++  ++ +      K+ L E+  L  +  D  + +        L
Sbjct: 40  GYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYD------L 93

Query: 207 KVPDDLGRFKEMPITVCYEDQDSDSREKTGVFL 239
            +PDDL +F E+ I +   D D     KT +FL
Sbjct: 94  IIPDDLLKFDELYIVLEIADSDLKKLFKTPIFL 126


>pdb|3CLW|A Chain A, Crystal Structure Of Conserved Exported Protein From
           Bacteroides Fragilis
 pdb|3CLW|B Chain B, Crystal Structure Of Conserved Exported Protein From
           Bacteroides Fragilis
 pdb|3CLW|C Chain C, Crystal Structure Of Conserved Exported Protein From
           Bacteroides Fragilis
 pdb|3CLW|D Chain D, Crystal Structure Of Conserved Exported Protein From
           Bacteroides Fragilis
 pdb|3CLW|E Chain E, Crystal Structure Of Conserved Exported Protein From
           Bacteroides Fragilis
 pdb|3CLW|F Chain F, Crystal Structure Of Conserved Exported Protein From
           Bacteroides Fragilis
          Length = 507

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 253 KLADVKENRDPQEKGRPLSRKRRDWRLNL 281
           K+AD+   R+  EKG P+     +WR+N+
Sbjct: 44  KIADLLFKREFDEKGNPIGMALTNWRVNI 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,120,874
Number of Sequences: 62578
Number of extensions: 263458
Number of successful extensions: 1274
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 8
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)